AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0703590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703590 MtrunA17_Chr8g0381861 76.176 319 25 3 1 306 1 281 8.49e-142 402
Msa0703590 MtrunA17_Chr3g0123831 46.809 235 78 5 66 296 73 264 8.62e-45 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703590 AT5G65250.1 47.489 219 75 3 66 284 93 271 2.50e-49 167

Find 92 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTAGGCAGCTTGAGAAAT+TGG 0.177372 4_4:+75587816 Msa0703590:CDS
CTTTGACCATGGCTTCATTC+AGG 0.224855 4_4:-75587185 None:intergenic
AGCCCTGCAATCAGACATTT+TGG 0.237492 4_4:+75589053 Msa0703590:CDS
AATTTGAAAGTGTGACTATT+TGG 0.238960 4_4:-75587283 None:intergenic
TCATTCAGGCTTCTTCTGTT+TGG 0.240961 4_4:-75587171 None:intergenic
CATTCAGGCTTCTTCTGTTT+GGG 0.241140 4_4:-75587170 None:intergenic
CCGTGTTCTTCACTAGTTTC+AGG 0.242419 4_4:-75589597 None:intergenic
TTTGCAGAGAATTGAGAAAT+TGG 0.262448 4_4:+75587753 Msa0703590:CDS
GTAGTAATTACCTCAGTTAT+AGG 0.273196 4_4:-75587877 None:intergenic
GGAAAGGAAGGAATCAAAAT+TGG 0.279238 4_4:-75587509 None:intergenic
GGCTAATGCTCTTGCGGCCT+CGG 0.289526 4_4:-75589034 None:intergenic
GAACGGTGGGGTTTCTGTTT+CGG 0.293881 4_4:+75587720 Msa0703590:CDS
CCGTCGCCGTGACTGCAATT+TGG 0.295008 4_4:+75587578 Msa0703590:CDS
AGTAGAAGAAAGAACATTAC+TGG 0.332304 4_4:-75587243 None:intergenic
AGAGTAATGCGACGGTTGTT+AGG 0.336551 4_4:+75587788 Msa0703590:CDS
AGCTTGAGAAATTGGGGATT+AGG 0.351998 4_4:+75587824 Msa0703590:CDS
TCTAGGCAGCTTGAGAAATT+GGG 0.354881 4_4:+75587817 Msa0703590:CDS
TCTCCAAAATGTCTGATTGC+AGG 0.356336 4_4:-75589056 None:intergenic
AGGTTCCTTCAAACCCTTCC+TGG 0.363702 4_4:-75587857 None:intergenic
GAATGAGGAGTTGAAGAAAA+AGG 0.364028 4_4:-75587355 None:intergenic
TGGGGTTTCTGTTTCGGAGG+TGG 0.403058 4_4:+75587726 Msa0703590:CDS
TTGAATGAAGACTGCAGCTC+TGG 0.409148 4_4:+75588999 Msa0703590:intron
TATCTTTGAAACAAAGTATG+AGG 0.415913 4_4:+75588568 Msa0703590:CDS
TGGAAAGTGGTTTGAGGCTG+AGG 0.435164 4_4:-75587411 None:intergenic
AGAGAAGAGCGGAGAGTTCG+AGG 0.448141 4_4:-75587534 None:intergenic
ATTTGAAAGTGTGACTATTT+GGG 0.448187 4_4:-75587282 None:intergenic
GAGTAATGCGACGGTTGTTA+GGG 0.448272 4_4:+75587789 Msa0703590:CDS
GACGGAAATTTGAGATCGGC+GGG 0.467109 4_4:-75587479 None:intergenic
GCAGAGAATTGAGAAATTGG+AGG 0.472739 4_4:+75587756 Msa0703590:CDS
GGAAGTGAAACGGTGGGGTG+TGG 0.478399 4_4:-75587431 None:intergenic
TTGCGAAGGCAGGTAAGCTA+TGG 0.479688 4_4:+75589565 Msa0703590:CDS
AGTGGTTTGAGGCTGAGGAT+TGG 0.483125 4_4:-75587406 None:intergenic
GAAGGAATCAAAATTGGAAT+CGG 0.487467 4_4:-75587503 None:intergenic
AAACGGTGGGGTGTGGAAAG+TGG 0.487596 4_4:-75587424 None:intergenic
AGAGGACGTAAGAGTGAATG+AGG 0.489716 4_4:-75587370 None:intergenic
CGGTGATTAGGAGAAGGAAA+TGG 0.490410 4_4:+75587683 Msa0703590:CDS
GGATTAGGTTTCGTGTTACC+AGG 0.498013 4_4:+75587839 Msa0703590:CDS
ATTCTTGCAATTGCGAAGGC+AGG 0.502036 4_4:+75589555 Msa0703590:CDS
CGGAGAGTTCGAGGAAGGAA+AGG 0.506937 4_4:-75587525 None:intergenic
GAGAATTGAGAAATTGGAGG+AGG 0.507588 4_4:+75587759 Msa0703590:CDS
TGTTACCAGGAAGGGTTTGA+AGG 0.509421 4_4:+75587852 Msa0703590:CDS
GGAGTTGGAGTGGACGGTGT+AGG 0.511955 4_4:-75587452 None:intergenic
CGTGACTGCAATTTGGAAGA+AGG 0.512903 4_4:+75587585 Msa0703590:CDS
ATTGGAGTATTGAGATGAAG+AGG 0.520273 4_4:-75587388 None:intergenic
CTCCAAAATGTCTGATTGCA+GGG 0.525218 4_4:-75589055 None:intergenic
CGGAAATTTGAGATCGGCGG+GGG 0.525952 4_4:-75587477 None:intergenic
ACTTTCATTTCAGGATTACA+AGG 0.527608 4_4:+75589987 Msa0703590:intron
ATCAAAATTGGAATCGGCGA+CGG 0.530085 4_4:-75587497 None:intergenic
TTCTTCTGTTTGGGTGACAA+AGG 0.530173 4_4:-75587161 None:intergenic
CTTCTTCCAAATTGCAGTCA+CGG 0.532215 4_4:-75587584 None:intergenic
GGGGAAGGAGTTGGAGTGGA+CGG 0.535310 4_4:-75587458 None:intergenic
CTAGGCAGCTTGAGAAATTG+GGG 0.538326 4_4:+75587818 Msa0703590:CDS
CGGTGGGGTTTCTGTTTCGG+AGG 0.539820 4_4:+75587723 Msa0703590:CDS
AGGTTTCGTGTTACCAGGAA+GGG 0.543976 4_4:+75587844 Msa0703590:CDS
GAGAGACGGTGTTGAACGGT+GGG 0.546933 4_4:+75587707 Msa0703590:CDS
GAGAAGGAAATGGAGAGAGA+CGG 0.562581 4_4:+75587693 Msa0703590:CDS
TGGCAAGTGAGTAACATTGT+TGG 0.564961 4_4:-75587310 None:intergenic
TTTGAAGGAACCTATAACTG+AGG 0.565016 4_4:+75587867 Msa0703590:CDS
AAGAGCGGAGAGTTCGAGGA+AGG 0.566579 4_4:-75587530 None:intergenic
TAGGTTTCGTGTTACCAGGA+AGG 0.568467 4_4:+75587843 Msa0703590:CDS
GAGTTCGAGGAAGGAAAGGA+AGG 0.569587 4_4:-75587521 None:intergenic
AATGCGTGAAATGGTGATGA+TGG 0.584311 4_4:-75587330 None:intergenic
TGGAGAGAGACGGTGTTGAA+CGG 0.589136 4_4:+75587703 Msa0703590:CDS
GTATGAGGTTTCAAGAAGGA+AGG 0.589263 4_4:+75588583 Msa0703590:CDS
GGACGGTGTAGGAAGTGAAA+CGG 0.592277 4_4:-75587441 None:intergenic
TGCGAAGGCAGGTAAGCTAT+GGG 0.592521 4_4:+75589566 Msa0703590:CDS
AAGGAGTTATATCTTGCTAT+CGG 0.595941 4_4:+75587604 Msa0703590:CDS
CGACGGAAATTTGAGATCGG+CGG 0.599042 4_4:-75587480 None:intergenic
CTGGTGCGGTGATTAGGAGA+AGG 0.610719 4_4:+75587677 Msa0703590:CDS
GGTGTAGGAAGTGAAACGGT+GGG 0.613998 4_4:-75587437 None:intergenic
CGGCGACGGAAATTTGAGAT+CGG 0.614058 4_4:-75587483 None:intergenic
CCAAATTGCAGTCACGGCGA+CGG 0.616365 4_4:-75587578 None:intergenic
GGGGTGTGGAAAGTGGTTTG+AGG 0.618981 4_4:-75587417 None:intergenic
TTGCAGGGCTAATGCTCTTG+CGG 0.622054 4_4:-75589040 None:intergenic
AAGAAGCCTGAATGAAGCCA+TGG 0.626541 4_4:+75587179 Msa0703590:five_prime_UTR
CAAAGTATGAGGTTTCAAGA+AGG 0.626591 4_4:+75588579 Msa0703590:CDS
GGATTTGAAGAGTAATGCGA+CGG 0.629644 4_4:+75587780 Msa0703590:CDS
ACAGTACAGGATCTACATCT+CGG 0.634582 4_4:-75588729 None:intergenic
GACGGTGAAAGATACGATGA+GGG 0.637410 4_4:-75587560 None:intergenic
CGACGGTGAAAGATACGATG+AGG 0.643423 4_4:-75587561 None:intergenic
TCTCATTCTTGCAATTGCGA+AGG 0.648334 4_4:+75589551 Msa0703590:CDS
AGAGAGACGGTGTTGAACGG+TGG 0.648405 4_4:+75587706 Msa0703590:CDS
CGGTGTAGGAAGTGAAACGG+TGG 0.657647 4_4:-75587438 None:intergenic
AGAGACGGTGTTGAACGGTG+GGG 0.693868 4_4:+75587708 Msa0703590:CDS
TCGGTAACAGAGTTGCTCCG+TGG 0.696566 4_4:+75587623 Msa0703590:CDS
CCTGAAACTAGTGAAGAACA+CGG 0.696745 4_4:+75589597 Msa0703590:CDS
GATGAGGGAAGAGAGAAGAG+CGG 0.709448 4_4:-75587545 None:intergenic
CAGATGAATATGCATTGGTG+TGG 0.711307 4_4:+75590067 Msa0703590:CDS
TCTGGCACAGAAGAATTCCG+AGG 0.724089 4_4:+75589017 Msa0703590:CDS
CTCAGCTGCGAATCTCAATG+CGG 0.734213 4_4:+75589638 Msa0703590:CDS
GTGTAGGAAGTGAAACGGTG+GGG 0.736083 4_4:-75587436 None:intergenic
ACGGAAATTTGAGATCGGCG+GGG 0.740613 4_4:-75587478 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTTCATAATAAACTTTA+TGG - chr4_4:75587964-75587983 None:intergenic 15.0%
!! TATTCTATCTAATATTCAAT+AGG - chr4_4:75588221-75588240 None:intergenic 15.0%
!! TATTGAATATTAGATAGAAT+AGG + chr4_4:75588220-75588239 Msa0703590:intron 15.0%
!!! AGTAAGTTGAACAATAAATT+GGG - chr4_4:75588079-75588098 None:intergenic 20.0%
!!! AAGTAAGTTGAACAATAAAT+TGG - chr4_4:75588080-75588099 None:intergenic 20.0%
!!! TTTAGTATAGTTTTTACCAA+TGG + chr4_4:75588189-75588208 Msa0703590:intron 20.0%
!!! ATTTTGTTATTTGAACAAGT+CGG - chr4_4:75588291-75588310 None:intergenic 20.0%
!!! AGTTTGTTATTGAACTTTAA+AGG + chr4_4:75589189-75589208 Msa0703590:intron 20.0%
!!! TTAAAGGTAACATTATTTTG+TGG + chr4_4:75589205-75589224 Msa0703590:intron 20.0%
!! TAATGATTACACATTTACTA+AGG + chr4_4:75589826-75589845 Msa0703590:intron 20.0%
!! AATGATTACACATTTACTAA+GGG + chr4_4:75589827-75589846 Msa0703590:intron 20.0%
!! ATTTGAAAGTGTGACTATTT+GGG - chr4_4:75587285-75587304 None:intergenic 25.0%
!! AATTTGAAAGTGTGACTATT+TGG - chr4_4:75587286-75587305 None:intergenic 25.0%
!! TAAGTTGGAATATATTCAAG+AGG - chr4_4:75588015-75588034 None:intergenic 25.0%
!!! ATTCAAATAAAGCTCTAAGT+TGG - chr4_4:75588030-75588049 None:intergenic 25.0%
!!! TATCTTTGAAACAAAGTATG+AGG + chr4_4:75588568-75588587 Msa0703590:CDS 25.0%
! TTTATGTGCCAATAAAATTC+TGG - chr4_4:75589806-75589825 None:intergenic 25.0%
! TGTTCATTTACTTTCATTTC+AGG + chr4_4:75589978-75589997 Msa0703590:intron 25.0%
!! TTTTTGTTACAGCAAAACTA+AGG - chr4_4:75590047-75590066 None:intergenic 25.0%
! AAAAACAGATGAATATGCAT+TGG + chr4_4:75590062-75590081 Msa0703590:CDS 25.0%
AGTAGAAGAAAGAACATTAC+TGG - chr4_4:75587246-75587265 None:intergenic 30.0%
GAAGGAATCAAAATTGGAAT+CGG - chr4_4:75587506-75587525 None:intergenic 30.0%
! AAGGAGTTATATCTTGCTAT+CGG + chr4_4:75587604-75587623 Msa0703590:CDS 30.0%
TTTGCAGAGAATTGAGAAAT+TGG + chr4_4:75587753-75587772 Msa0703590:CDS 30.0%
GTAGTAATTACCTCAGTTAT+AGG - chr4_4:75587880-75587899 None:intergenic 30.0%
! ATTCAATAGGTCTTTTCCAT+TGG - chr4_4:75588208-75588227 None:intergenic 30.0%
! CCAGATTGAGTCAATTTTTA+GGG - chr4_4:75588683-75588702 None:intergenic 30.0%
! ACCAGATTGAGTCAATTTTT+AGG - chr4_4:75588684-75588703 None:intergenic 30.0%
TTCCAGTAATATGAATTCCT+CGG - chr4_4:75588763-75588782 None:intergenic 30.0%
!! TCATTAACATTTTGAGTGTC+TGG + chr4_4:75588899-75588918 Msa0703590:intron 30.0%
GGAGTTTAAGTAACATTGAA+GGG - chr4_4:75589131-75589150 None:intergenic 30.0%
AAACTGGAATACTAGATTCA+TGG - chr4_4:75589388-75589407 None:intergenic 30.0%
TTTAACCCAAGCTTCAAATT+TGG - chr4_4:75589680-75589699 None:intergenic 30.0%
GAAAACCATCAAATTACAGA+GGG + chr4_4:75589705-75589724 Msa0703590:intron 30.0%
! CAAAGTAGCCAGAATTTTAT+TGG + chr4_4:75589795-75589814 Msa0703590:intron 30.0%
ACTTTCATTTCAGGATTACA+AGG + chr4_4:75589987-75590006 Msa0703590:intron 30.0%
AAAAAGGTGAATGCGTGAAA+TGG - chr4_4:75587342-75587361 None:intergenic 35.0%
GAATGAGGAGTTGAAGAAAA+AGG - chr4_4:75587358-75587377 None:intergenic 35.0%
!! ATTGGAGTATTGAGATGAAG+AGG - chr4_4:75587391-75587410 None:intergenic 35.0%
GGAAAGGAAGGAATCAAAAT+TGG - chr4_4:75587512-75587531 None:intergenic 35.0%
ACCAAAAACAACAAACTCCA+CGG - chr4_4:75587643-75587662 None:intergenic 35.0%
!!! AGTTTGTTGTTTTTGGTGGT+TGG + chr4_4:75587646-75587665 Msa0703590:CDS 35.0%
TTTGAAGGAACCTATAACTG+AGG + chr4_4:75587867-75587886 Msa0703590:CDS 35.0%
GGAAGAAAAAAACAGGAATG+TGG + chr4_4:75588372-75588391 Msa0703590:intron 35.0%
! TTGCAAGAAAATGCAGGTTT+TGG + chr4_4:75588520-75588539 Msa0703590:intron 35.0%
! TGCAAGAAAATGCAGGTTTT+GGG + chr4_4:75588521-75588540 Msa0703590:intron 35.0%
CAAAGTATGAGGTTTCAAGA+AGG + chr4_4:75588579-75588598 Msa0703590:CDS 35.0%
AGGTCAGAAAACAATGAAAC+TGG + chr4_4:75588603-75588622 Msa0703590:intron 35.0%
GGTCAGAAAACAATGAAACT+GGG + chr4_4:75588604-75588623 Msa0703590:intron 35.0%
GTCAGAAAACAATGAAACTG+GGG + chr4_4:75588605-75588624 Msa0703590:intron 35.0%
! CCCTAAAAATTGACTCAATC+TGG + chr4_4:75588680-75588699 Msa0703590:intron 35.0%
CGGAGTTTAAGTAACATTGA+AGG - chr4_4:75589132-75589151 None:intergenic 35.0%
AAATCTCTAGTCTGACGTAT+GGG - chr4_4:75589414-75589433 None:intergenic 35.0%
AAAATCTCTAGTCTGACGTA+TGG - chr4_4:75589415-75589434 None:intergenic 35.0%
! TCGAGTTTGACTTATCTTGA+TGG + chr4_4:75589486-75589505 Msa0703590:intron 35.0%
TGGTGTTTGATCATTCATGT+AGG + chr4_4:75589506-75589525 Msa0703590:intron 35.0%
TTGAAGCTTGGGTTAAACTA+AGG + chr4_4:75589683-75589702 Msa0703590:intron 35.0%
GGAAAACCATCAAATTACAG+AGG + chr4_4:75589704-75589723 Msa0703590:intron 35.0%
TTCATCCCTCTGTAATTTGA+TGG - chr4_4:75589713-75589732 None:intergenic 35.0%
! ACTTTGACTTTGTGTGTAGA+TGG - chr4_4:75589781-75589800 None:intergenic 35.0%
TTACTCAACGAGTCAATTCA+AGG + chr4_4:75589886-75589905 Msa0703590:intron 35.0%
!! TCTGGTTCTGTGGTAAATTT+CGG + chr4_4:75589930-75589949 Msa0703590:intron 35.0%
TTCTTCTGTTTGGGTGACAA+AGG - chr4_4:75587164-75587183 None:intergenic 40.0%
CATTCAGGCTTCTTCTGTTT+GGG - chr4_4:75587173-75587192 None:intergenic 40.0%
TCATTCAGGCTTCTTCTGTT+TGG - chr4_4:75587174-75587193 None:intergenic 40.0%
! TTTTCAGCTCTCTTTGACCA+TGG - chr4_4:75587199-75587218 None:intergenic 40.0%
TGGCAAGTGAGTAACATTGT+TGG - chr4_4:75587313-75587332 None:intergenic 40.0%
! AATGCGTGAAATGGTGATGA+TGG - chr4_4:75587333-75587352 None:intergenic 40.0%
ATCAAAATTGGAATCGGCGA+CGG - chr4_4:75587500-75587519 None:intergenic 40.0%
CTTCTTCCAAATTGCAGTCA+CGG - chr4_4:75587587-75587606 None:intergenic 40.0%
!!! TCCGTGGAGTTTGTTGTTTT+TGG + chr4_4:75587639-75587658 Msa0703590:CDS 40.0%
!!! GTGGAGTTTGTTGTTTTTGG+TGG + chr4_4:75587642-75587661 Msa0703590:CDS 40.0%
GCAGAGAATTGAGAAATTGG+AGG + chr4_4:75587756-75587775 Msa0703590:CDS 40.0%
GAGAATTGAGAAATTGGAGG+AGG + chr4_4:75587759-75587778 Msa0703590:CDS 40.0%
GGATTTGAAGAGTAATGCGA+CGG + chr4_4:75587780-75587799 Msa0703590:CDS 40.0%
TCTAGGCAGCTTGAGAAATT+GGG + chr4_4:75587817-75587836 Msa0703590:CDS 40.0%
AGCTTGAGAAATTGGGGATT+AGG + chr4_4:75587824-75587843 Msa0703590:CDS 40.0%
!! GAGAGTTTGTTAGAACACAG+CGG + chr4_4:75588350-75588369 Msa0703590:intron 40.0%
!! AGAGTTTGTTAGAACACAGC+GGG + chr4_4:75588351-75588370 Msa0703590:intron 40.0%
GTGGAATCTGAGCAAAAGAT+AGG + chr4_4:75588391-75588410 Msa0703590:intron 40.0%
ATGAGCTTGCAAGAAAATGC+AGG + chr4_4:75588514-75588533 Msa0703590:intron 40.0%
!!! AAGAAAATGCAGGTTTTGGG+TGG + chr4_4:75588524-75588543 Msa0703590:intron 40.0%
!! GTTTTGGGTGGAAATGACAT+TGG + chr4_4:75588536-75588555 Msa0703590:CDS 40.0%
GTATGAGGTTTCAAGAAGGA+AGG + chr4_4:75588583-75588602 Msa0703590:CDS 40.0%
! AGTGGCTGCTTTCATGAAAT+GGG - chr4_4:75588646-75588665 None:intergenic 40.0%
! TAGTGGCTGCTTTCATGAAA+TGG - chr4_4:75588647-75588666 None:intergenic 40.0%
! AATTGACTCAATCTGGTTGC+AGG + chr4_4:75588687-75588706 Msa0703590:intron 40.0%
ACAGTACAGGATCTACATCT+CGG - chr4_4:75588732-75588751 None:intergenic 40.0%
CAGTAATATGAATTCCTCGG+AGG - chr4_4:75588760-75588779 None:intergenic 40.0%
CTCCGAGGAATTCATATTAC+TGG + chr4_4:75588758-75588777 Msa0703590:intron 40.0%
!! CATTTTGAGTGTCTGGTTGA+AGG + chr4_4:75588906-75588925 Msa0703590:intron 40.0%
CTCCAAAATGTCTGATTGCA+GGG - chr4_4:75589058-75589077 None:intergenic 40.0%
TCTCCAAAATGTCTGATTGC+AGG - chr4_4:75589059-75589078 None:intergenic 40.0%
!! GCAATCAGACATTTTGGAGA+AGG + chr4_4:75589059-75589078 Msa0703590:CDS 40.0%
! AAAGGTTTTGCTAGCAATGC+AGG + chr4_4:75589098-75589117 Msa0703590:CDS 40.0%
!! AAAGAGTGCTTGCTCTTTCA+CGG - chr4_4:75589152-75589171 None:intergenic 40.0%
!! AACACTTTAGCTCTCATGTG+CGG + chr4_4:75589245-75589264 Msa0703590:intron 40.0%
CACATCATTGTGTTGTGTGT+GGG - chr4_4:75589328-75589347 None:intergenic 40.0%
TCACATCATTGTGTTGTGTG+TGG - chr4_4:75589329-75589348 None:intergenic 40.0%
GGAATACTAGATTCATGGTC+TGG - chr4_4:75589383-75589402 None:intergenic 40.0%
TCTGACGTATGGGTTTAAAC+TGG - chr4_4:75589404-75589423 None:intergenic 40.0%
TCTCATTCTTGCAATTGCGA+AGG + chr4_4:75589551-75589570 Msa0703590:CDS 40.0%
CCTGAAACTAGTGAAGAACA+CGG + chr4_4:75589597-75589616 Msa0703590:CDS 40.0%
GAATCTCAATGCGGTAAATC+AGG + chr4_4:75589647-75589666 Msa0703590:intron 40.0%
! GTCCACCAAATTTGAAGCTT+GGG + chr4_4:75589672-75589691 Msa0703590:intron 40.0%
AACCCAAGCTTCAAATTTGG+TGG - chr4_4:75589677-75589696 None:intergenic 40.0%
! TTTTTCCCCATCTGTATCCA+CGG - chr4_4:75589866-75589885 None:intergenic 40.0%
TCAACGAGTCAATTCAAGGA+GGG + chr4_4:75589890-75589909 Msa0703590:intron 40.0%
!! CTGGTTCTGTGGTAAATTTC+GGG + chr4_4:75589931-75589950 Msa0703590:intron 40.0%
! CAGATGAATATGCATTGGTG+TGG + chr4_4:75590067-75590086 Msa0703590:CDS 40.0%
AAGAAGCCTGAATGAAGCCA+TGG + chr4_4:75587179-75587198 Msa0703590:five_prime_UTR 45.0%
CTTTGACCATGGCTTCATTC+AGG - chr4_4:75587188-75587207 None:intergenic 45.0%
AGAGGACGTAAGAGTGAATG+AGG - chr4_4:75587373-75587392 None:intergenic 45.0%
GACGGTGAAAGATACGATGA+GGG - chr4_4:75587563-75587582 None:intergenic 45.0%
CGTGACTGCAATTTGGAAGA+AGG + chr4_4:75587585-75587604 Msa0703590:CDS 45.0%
!!! TTGGTGGTTGGTGTTTTGAC+TGG + chr4_4:75587658-75587677 Msa0703590:CDS 45.0%
!! TTTTGACTGGTGCGGTGATT+AGG + chr4_4:75587671-75587690 Msa0703590:CDS 45.0%
CGGTGATTAGGAGAAGGAAA+TGG + chr4_4:75587683-75587702 Msa0703590:CDS 45.0%
GAGAAGGAAATGGAGAGAGA+CGG + chr4_4:75587693-75587712 Msa0703590:CDS 45.0%
AGAGTAATGCGACGGTTGTT+AGG + chr4_4:75587788-75587807 Msa0703590:CDS 45.0%
GAGTAATGCGACGGTTGTTA+GGG + chr4_4:75587789-75587808 Msa0703590:CDS 45.0%
!! CGGTTGTTAGGGTTTTGTCT+AGG + chr4_4:75587800-75587819 Msa0703590:CDS 45.0%
GTCTAGGCAGCTTGAGAAAT+TGG + chr4_4:75587816-75587835 Msa0703590:CDS 45.0%
CTAGGCAGCTTGAGAAATTG+GGG + chr4_4:75587818-75587837 Msa0703590:CDS 45.0%
GGATTAGGTTTCGTGTTACC+AGG + chr4_4:75587839-75587858 Msa0703590:CDS 45.0%
TAGGTTTCGTGTTACCAGGA+AGG + chr4_4:75587843-75587862 Msa0703590:CDS 45.0%
AGGTTTCGTGTTACCAGGAA+GGG + chr4_4:75587844-75587863 Msa0703590:CDS 45.0%
TGTTACCAGGAAGGGTTTGA+AGG + chr4_4:75587852-75587871 Msa0703590:CDS 45.0%
CACAGCGGGAAGAAAAAAAC+AGG + chr4_4:75588365-75588384 Msa0703590:intron 45.0%
! TGGCTGCTTTCATGAAATGG+GGG - chr4_4:75588644-75588663 None:intergenic 45.0%
! GTGGCTGCTTTCATGAAATG+GGG - chr4_4:75588645-75588664 None:intergenic 45.0%
AGGGAGATTCACAGTTGTAG+TGG - chr4_4:75588664-75588683 None:intergenic 45.0%
TTGAATGAAGACTGCAGCTC+TGG + chr4_4:75588999-75589018 Msa0703590:intron 45.0%
! AGCCCTGCAATCAGACATTT+TGG + chr4_4:75589053-75589072 Msa0703590:CDS 45.0%
!! AGACATTTTGGAGAAGGAGC+TGG + chr4_4:75589065-75589084 Msa0703590:CDS 45.0%
!! GACATTTTGGAGAAGGAGCT+GGG + chr4_4:75589066-75589085 Msa0703590:CDS 45.0%
!! ACATTTTGGAGAAGGAGCTG+GGG + chr4_4:75589067-75589086 Msa0703590:CDS 45.0%
ATTGTGTTGTGTGTGGGTGT+GGG - chr4_4:75589322-75589341 None:intergenic 45.0%
ATTCTTGCAATTGCGAAGGC+AGG + chr4_4:75589555-75589574 Msa0703590:CDS 45.0%
! CCGTGTTCTTCACTAGTTTC+AGG - chr4_4:75589600-75589619 None:intergenic 45.0%
TCTCAATGCGGTAAATCAGG+AGG + chr4_4:75589650-75589669 Msa0703590:intron 45.0%
! GGTCCACCAAATTTGAAGCT+TGG + chr4_4:75589671-75589690 Msa0703590:intron 45.0%
AAGTTTCCCGTGGATACAGA+TGG + chr4_4:75589856-75589875 Msa0703590:intron 45.0%
AGTTTCCCGTGGATACAGAT+GGG + chr4_4:75589857-75589876 Msa0703590:intron 45.0%
! TTTTCCCCATCTGTATCCAC+GGG - chr4_4:75589865-75589884 None:intergenic 45.0%
CTCAACGAGTCAATTCAAGG+AGG + chr4_4:75589889-75589908 Msa0703590:intron 45.0%
CAACGAGTCAATTCAAGGAG+GGG + chr4_4:75589891-75589910 Msa0703590:intron 45.0%
GGAGAATTGTCTGAACTCTC+TGG + chr4_4:75589912-75589931 Msa0703590:intron 45.0%
! AGTGGTTTGAGGCTGAGGAT+TGG - chr4_4:75587409-75587428 None:intergenic 50.0%
! TGGAAAGTGGTTTGAGGCTG+AGG - chr4_4:75587414-75587433 None:intergenic 50.0%
GTGTAGGAAGTGAAACGGTG+GGG - chr4_4:75587439-75587458 None:intergenic 50.0%
GGTGTAGGAAGTGAAACGGT+GGG - chr4_4:75587440-75587459 None:intergenic 50.0%
GGACGGTGTAGGAAGTGAAA+CGG - chr4_4:75587444-75587463 None:intergenic 50.0%
! ACGGAAATTTGAGATCGGCG+GGG - chr4_4:75587481-75587500 None:intergenic 50.0%
! GACGGAAATTTGAGATCGGC+GGG - chr4_4:75587482-75587501 None:intergenic 50.0%
! CGACGGAAATTTGAGATCGG+CGG - chr4_4:75587483-75587502 None:intergenic 50.0%
! CGGCGACGGAAATTTGAGAT+CGG - chr4_4:75587486-75587505 None:intergenic 50.0%
GAGTTCGAGGAAGGAAAGGA+AGG - chr4_4:75587524-75587543 None:intergenic 50.0%
GATGAGGGAAGAGAGAAGAG+CGG - chr4_4:75587548-75587567 None:intergenic 50.0%
CGACGGTGAAAGATACGATG+AGG - chr4_4:75587564-75587583 None:intergenic 50.0%
!!! GGTTGGTGTTTTGACTGGTG+CGG + chr4_4:75587663-75587682 Msa0703590:CDS 50.0%
! TGGAGAGAGACGGTGTTGAA+CGG + chr4_4:75587703-75587722 Msa0703590:CDS 50.0%
GAACGGTGGGGTTTCTGTTT+CGG + chr4_4:75587720-75587739 Msa0703590:CDS 50.0%
AGGTTCCTTCAAACCCTTCC+TGG - chr4_4:75587860-75587879 None:intergenic 50.0%
TCTGGCACAGAAGAATTCCG+AGG + chr4_4:75589017-75589036 Msa0703590:CDS 50.0%
TTGCAGGGCTAATGCTCTTG+CGG - chr4_4:75589043-75589062 None:intergenic 50.0%
!! CATTTTGGAGAAGGAGCTGG+GGG + chr4_4:75589068-75589087 Msa0703590:CDS 50.0%
CATTGTGTTGTGTGTGGGTG+TGG - chr4_4:75589323-75589342 None:intergenic 50.0%
TTGCGAAGGCAGGTAAGCTA+TGG + chr4_4:75589565-75589584 Msa0703590:CDS 50.0%
TGCGAAGGCAGGTAAGCTAT+GGG + chr4_4:75589566-75589585 Msa0703590:CDS 50.0%
CTCAGCTGCGAATCTCAATG+CGG + chr4_4:75589638-75589657 Msa0703590:CDS 50.0%
CTGTATCCACGGGAAACTTG+AGG - chr4_4:75589855-75589874 None:intergenic 50.0%
GTTTCCCGTGGATACAGATG+GGG + chr4_4:75589858-75589877 Msa0703590:intron 50.0%
!! GTCTGAACTCTCTGGTTCTG+TGG + chr4_4:75589920-75589939 Msa0703590:intron 50.0%
GGGGTGTGGAAAGTGGTTTG+AGG - chr4_4:75587420-75587439 None:intergenic 55.0%
AAACGGTGGGGTGTGGAAAG+TGG - chr4_4:75587427-75587446 None:intergenic 55.0%
CGGTGTAGGAAGTGAAACGG+TGG - chr4_4:75587441-75587460 None:intergenic 55.0%
! AATTTGAGATCGGCGGGGGA+AGG - chr4_4:75587476-75587495 None:intergenic 55.0%
! CGGAAATTTGAGATCGGCGG+GGG - chr4_4:75587480-75587499 None:intergenic 55.0%
CGGAGAGTTCGAGGAAGGAA+AGG - chr4_4:75587528-75587547 None:intergenic 55.0%
AAGAGCGGAGAGTTCGAGGA+AGG - chr4_4:75587533-75587552 None:intergenic 55.0%
AGAGAAGAGCGGAGAGTTCG+AGG - chr4_4:75587537-75587556 None:intergenic 55.0%
CCAAATTGCAGTCACGGCGA+CGG - chr4_4:75587581-75587600 None:intergenic 55.0%
TCGGTAACAGAGTTGCTCCG+TGG + chr4_4:75587623-75587642 Msa0703590:CDS 55.0%
CTGGTGCGGTGATTAGGAGA+AGG + chr4_4:75587677-75587696 Msa0703590:CDS 55.0%
! AGAGAGACGGTGTTGAACGG+TGG + chr4_4:75587706-75587725 Msa0703590:CDS 55.0%
! GAGAGACGGTGTTGAACGGT+GGG + chr4_4:75587707-75587726 Msa0703590:CDS 55.0%
! AGAGACGGTGTTGAACGGTG+GGG + chr4_4:75587708-75587727 Msa0703590:CDS 55.0%
TGGGGTTTCTGTTTCGGAGG+TGG + chr4_4:75587726-75587745 Msa0703590:CDS 55.0%
CTCGGAGGACACTACAGTAC+AGG - chr4_4:75588745-75588764 None:intergenic 55.0%
CTGTACTGTAGTGTCCTCCG+AGG + chr4_4:75588743-75588762 Msa0703590:intron 55.0%
GGAGCTGGGGGAAGTTCAAA+AGG + chr4_4:75589080-75589099 Msa0703590:CDS 55.0%
GGAAGTGAAACGGTGGGGTG+TGG - chr4_4:75587434-75587453 None:intergenic 60.0%
GGAGTTGGAGTGGACGGTGT+AGG - chr4_4:75587455-75587474 None:intergenic 60.0%
GGGGAAGGAGTTGGAGTGGA+CGG - chr4_4:75587461-75587480 None:intergenic 60.0%
CCGTCGCCGTGACTGCAATT+TGG + chr4_4:75587578-75587597 Msa0703590:CDS 60.0%
CGGTGGGGTTTCTGTTTCGG+AGG + chr4_4:75587723-75587742 Msa0703590:CDS 60.0%
GGCTAATGCTCTTGCGGCCT+CGG - chr4_4:75589037-75589056 None:intergenic 60.0%
AGGGAGCCTCAAGTTTCCCG+TGG + chr4_4:75589846-75589865 Msa0703590:intron 60.0%
AGATCGGCGGGGGAAGGAGT+TGG - chr4_4:75587470-75587489 None:intergenic 65.0%
GGGTGTGGGTGTGCGTAGGT+GGG - chr4_4:75589308-75589327 None:intergenic 65.0%
TGGGTGTGGGTGTGCGTAGG+TGG - chr4_4:75589309-75589328 None:intergenic 65.0%
GTGTGGGTGTGGGTGTGCGT+AGG - chr4_4:75589312-75589331 None:intergenic 65.0%
GGCGGGGGAAGGAGTTGGAG+TGG - chr4_4:75587465-75587484 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 75587153 75590101 75587153 ID=Msa0703590;Name=Msa0703590
chr4_4 mRNA 75587153 75590101 75587153 ID=Msa0703590-mRNA-1;Parent=Msa0703590;Name=Msa0703590-mRNA-1;_AED=0.19;_eAED=0.19;_QI=163|0.2|0.33|0.66|1|1|6|0|340
chr4_4 exon 75587153 75587888 75587153 ID=Msa0703590-mRNA-1:exon:23765;Parent=Msa0703590-mRNA-1
chr4_4 exon 75588536 75588604 75588536 ID=Msa0703590-mRNA-1:exon:23766;Parent=Msa0703590-mRNA-1
chr4_4 exon 75588709 75588744 75588709 ID=Msa0703590-mRNA-1:exon:23767;Parent=Msa0703590-mRNA-1
chr4_4 exon 75589009 75589119 75589009 ID=Msa0703590-mRNA-1:exon:23768;Parent=Msa0703590-mRNA-1
chr4_4 exon 75589528 75589659 75589528 ID=Msa0703590-mRNA-1:exon:23769;Parent=Msa0703590-mRNA-1
chr4_4 exon 75590000 75590101 75590000 ID=Msa0703590-mRNA-1:exon:23770;Parent=Msa0703590-mRNA-1
chr4_4 five_prime_UTR 75587153 75587315 75587153 ID=Msa0703590-mRNA-1:five_prime_utr;Parent=Msa0703590-mRNA-1
chr4_4 CDS 75587316 75587888 75587316 ID=Msa0703590-mRNA-1:cds;Parent=Msa0703590-mRNA-1
chr4_4 CDS 75588536 75588604 75588536 ID=Msa0703590-mRNA-1:cds;Parent=Msa0703590-mRNA-1
chr4_4 CDS 75588709 75588744 75588709 ID=Msa0703590-mRNA-1:cds;Parent=Msa0703590-mRNA-1
chr4_4 CDS 75589009 75589119 75589009 ID=Msa0703590-mRNA-1:cds;Parent=Msa0703590-mRNA-1
chr4_4 CDS 75589528 75589659 75589528 ID=Msa0703590-mRNA-1:cds;Parent=Msa0703590-mRNA-1
chr4_4 CDS 75590000 75590101 75590000 ID=Msa0703590-mRNA-1:cds;Parent=Msa0703590-mRNA-1
Gene Sequence

>Msa0703590

ATGTTACTCACTTGCCATCATCACCATTTCACGCATTCACCTTTTTCTTCAACTCCTCATTCACTCTTACGTCCTCTTCATCTCAATACTCCAATCCTCAGCCTCAAACCACTTTCCACACCCCACCGTTTCACTTCCTACACCGTCCACTCCAACTCCTTCCCCCGCCGATCTCAAATTTCCGTCGCCGATTCCAATTTTGATTCCTTCCTTTCCTTCCTCGAACTCTCCGCTCTTCTCTCTTCCCTCATCGTATCTTTCACCGTCGCCGTGACTGCAATTTGGAAGAAGGAGTTATATCTTGCTATCGGTAACAGAGTTGCTCCGTGGAGTTTGTTGTTTTTGGTGGTTGGTGTTTTGACTGGTGCGGTGATTAGGAGAAGGAAATGGAGAGAGACGGTGTTGAACGGTGGGGTTTCTGTTTCGGAGGTGGAATTTTTGCAGAGAATTGAGAAATTGGAGGAGGATTTGAAGAGTAATGCGACGGTTGTTAGGGTTTTGTCTAGGCAGCTTGAGAAATTGGGGATTAGGTTTCGTGTTACCAGGAAGGGTTTGAAGGAACCTATAACTGAGGTTTTGGGTGGAAATGACATTGGAAAACAGTCTATCTTTGAAACAAAGTATGAGGTTTCAAGAAGGAAGGAGCATGAAGCAAAAACTCTCCGAGATGTAGATCCTACTGCAGCTCTGGCACAGAAGAATTCCGAGGCCGCAAGAGCATTAGCCCTGCAATCAGACATTTTGGAGAAGGAGCTGGGGGAAGTTCAAAAGGTTTTGCTAGCAATGCAGGAACAACAGCAAAAACAACTTGATCTCATTCTTGCAATTGCGAAGGCAGGTAAGCTATGGGAAAGCAAGCCTGAAACTAGTGAAGAACACGGTACAATAGATATGTCTAACTCAGCTGCGAATCTCAATGCGGATTACAAGGCACTCATCATCAATTTGTCACAGTTCACGTCTTTCCTTAGTTTTGCTGTAACAAAAACAGATGAATATGCATTGGTGTGGTACATACTTTAG

Protein sequence

>Msa0703590

MLLTCHHHHFTHSPFSSTPHSLLRPLHLNTPILSLKPLSTPHRFTSYTVHSNSFPRRSQISVADSNFDSFLSFLELSALLSSLIVSFTVAVTAIWKKELYLAIGNRVAPWSLLFLVVGVLTGAVIRRRKWRETVLNGGVSVSEVEFLQRIEKLEEDLKSNATVVRVLSRQLEKLGIRFRVTRKGLKEPITEVLGGNDIGKQSIFETKYEVSRRKEHEAKTLRDVDPTAALAQKNSEAARALALQSDILEKELGEVQKVLLAMQEQQQKQLDLILAIAKAGKLWESKPETSEEHGTIDMSNSAANLNADYKALIINLSQFTSFLSFAVTKTDEYALVWYIL*