AlfalfaGEDB | Msa0993450

M. sativa cultivar zhongmu-4 / Msa0993450

KEGG: -
GO: GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0015066 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772
PFAM: PF00197.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993450	XP_003619580.2	33.508	191	112	10	201	384	8	190	2.93e-12	77.4
Msa0993450	XP_003619580.2	75.943	212	34	3	1	195	1	212	1.27e-99	305

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993450	sp\|O82711\|PIP22_PEA	48.837	215	104	4	197	407	4	216	1.42e-57	191
Msa0993450	sp\|O82711\|PIP22_PEA	39.623	212	96	10	1	186	1	206	5.86e-25	104

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993450	G7KMU9	33.508	191	112	10	201	384	8	190	1.40e-12	77.4
Msa0993450	G7KMU9	75.943	212	34	3	1	195	1	212	6.08e-100	305

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004340	Msa0993450	-0.802038	6.780452e-49	-8.615850e-47
Msa0004580	Msa0993450	0.854401	1.261554e-61	-8.615850e-47
Msa0005690	Msa0993450	-0.800586	1.344366e-48	-8.615850e-47
Msa0010150	Msa0993450	0.849460	3.187410e-60	-8.615850e-47
Msa0011010	Msa0993450	0.804042	2.611543e-49	-8.615850e-47
Msa0011040	Msa0993450	0.821498	3.911014e-53	-8.615850e-47
Msa0014590	Msa0993450	0.828278	9.825305e-55	-8.615850e-47
Msa0017420	Msa0993450	-0.801412	9.114498e-49	-8.615850e-47
Msa0021980	Msa0993450	-0.811673	6.223109e-51	-8.615850e-47
Msa0024280	Msa0993450	0.836044	1.178328e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993450	MtrunA17_Chr1g0163381	59.009	222	82	5	196	408	3	224	3.79e-80	246
Msa0993450	MtrunA17_Chr1g0163381	33.498	203	100	13	11	183	11	208	3.98e-11	62.4
Msa0993450	MtrunA17_Chr6g0476821	73.881	134	26	2	71	195	12	145	2.07e-58	187
Msa0993450	MtrunA17_Chr6g0476831	50.935	214	100	4	197	407	4	215	1.74e-55	183
Msa0993450	MtrunA17_Chr6g0476831	34.928	209	107	7	1	185	1	204	5.01e-18	82.8
Msa0993450	MtrunA17_Chr6g0476871	49.758	207	95	5	209	408	16	220	8.76e-50	167
Msa0993450	MtrunA17_Chr6g0476871	35.533	197	92	11	18	185	18	208	3.79e-15	74.3
Msa0993450	MtrunA17_Chr6g0477741	46.231	199	97	6	199	392	6	199	4.30e-46	158
Msa0993450	MtrunA17_Chr6g0477741	37.557	221	102	12	1	195	1	211	7.30e-20	87.4
Msa0993450	MtrunA17_Chr6g0452491	45.813	203	102	5	197	395	4	202	2.00e-44	153

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 68 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGAAGAAATAGAGGG+TGG	0.652446	6_4:+66002890	None:intergenic
AAAGCTTGCTGTACAACAAG+TGG	0.555218	6_4:+66002714	None:intergenic
AAAGGATAATGGAAAGTAGG+TGG	0.636765	6_4:+66002860	None:intergenic
AAATTGTCCAGTTACTGTCT+TGG	0.473177	6_4:-65999010	Msa0993450:CDS
AATGGTAAGAGTATTATAGA+TGG	0.435603	6_4:-66002504	Msa0993450:CDS
AATGTGCTGAATCCTCCAAG+TGG	0.759346	6_4:-66002581	Msa0993450:CDS
AATTATTACTCATGATCAAA+CGG	0.482573	6_4:+66002361	None:intergenic
ACAAATTGAGTAAAGGATAA+TGG	0.347391	6_4:+66002849	None:intergenic
ACCAGGTGTATCACTGACGG+TGG	0.650819	6_4:+66002428	None:intergenic
ACCTTTAACTACCACCCACT+TGG	0.461157	6_4:+66002566	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAACAAGTGAAGGATAAAAA+TGG	-	chr6_4:65998666-65998685	Msa0993450:CDS	30.0%
TATTTCTTACTCACAAGAAC+GGG	+	chr6_4:65998696-65998715	None:intergenic	30.0%
GTATTTCTTACTCACAAGAA+CGG	+	chr6_4:65998697-65998716	None:intergenic	30.0%
TATTCAAACTACAGATCTTC+CGG	+	chr6_4:65999204-65999223	None:intergenic	30.0%
TCAACGAATACAACTTCAAA+GGG	+	chr6_4:65999238-65999257	None:intergenic	30.0%
ATCAACGAATACAACTTCAA+AGG	+	chr6_4:65999239-65999258	None:intergenic	30.0%
CAGCAAGAACTTTATTAGAT+AGG	+	chr6_4:65999461-65999480	None:intergenic	30.0%
GGTAAAAGGTAAAATATTGG+TGG	+	chr6_4:65999519-65999538	None:intergenic	30.0%
TCCTTACAAAATCACTTGTA+AGG	-	chr6_4:65999817-65999836	Msa0993450:intron	30.0%
AAAAACCGTGTTAGAAATTG+TGG	-	chr6_4:65999987-66000006	Msa0993450:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	65998582	66002931	65998582	ID=Msa0993450;Name=Msa0993450
chr6_4	mRNA	65998582	66002931	65998582	ID=Msa0993450-mRNA-1;Parent=Msa0993450;Name=Msa0993450-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|0\|0\|4\|0\|408
chr6_4	exon	66002808	66002931	66002808	ID=Msa0993450-mRNA-1:exon:12357;Parent=Msa0993450-mRNA-1
chr6_4	exon	66002568	66002783	66002568	ID=Msa0993450-mRNA-1:exon:12356;Parent=Msa0993450-mRNA-1
chr6_4	exon	66002299	66002543	66002299	ID=Msa0993450-mRNA-1:exon:12355;Parent=Msa0993450-mRNA-1
chr6_4	exon	65998582	65999223	65998582	ID=Msa0993450-mRNA-1:exon:12354;Parent=Msa0993450-mRNA-1
chr6_4	CDS	66002808	66002931	66002808	ID=Msa0993450-mRNA-1:cds;Parent=Msa0993450-mRNA-1
chr6_4	CDS	66002568	66002783	66002568	ID=Msa0993450-mRNA-1:cds;Parent=Msa0993450-mRNA-1
chr6_4	CDS	66002299	66002543	66002299	ID=Msa0993450-mRNA-1:cds;Parent=Msa0993450-mRNA-1
chr6_4	CDS	65998582	65999223	65998582	ID=Msa0993450-mRNA-1:cds;Parent=Msa0993450-mRNA-1

Gene Sequence

>Msa0993450

ATGAACCCTACATTACTTACCACCCTCTATTTCTTCCTCTTTGCCCTAGCCACCTACTTTCCATTATCCTTTACTCAATTTGTTGAACAAGTGAAGGATAAAAATGGAAACCCCGTTCTTGTGACCGGTGAAAGTGGTGGTGGACTGAGGCTTAATGAGACAGAAGAATGTCCACTTGTTGTACAGCAAGCTTTTTCTAAGGATGTTAAAAGCCTGCCACTAACATTTATCCCAACAGAAAATATCAATGATTTCATCTTTACTGGCTTCACATCACTAGATATTGTATTTGAAAAGAAGACAAAATGTGCTGAATCCTCCAAGTGGGTGGTAGTTAAAGGTATTGGTGGTGGTGTTAATGGTAAGAGTATTATAGATGGTTTGTTTAAGATTGAGAGAAGTGGTTTTTTTGGATACAAGCTTATGTTTTGTCCCACCGTCAGTGATACACCTGGTTTATGTAATAATATTGGAAGATTTCTTGATAATGAAAATGGAGTCCGTTTGATCATGAGTAATAATTTTCAACCCTTTGAAGTTGTATTCGTTAATGTTGAAGATGTTACTCGATCCGGAAGATCTGTATTTCTTTGTTCACTCACCCTTTCCTTCTTTCTTTTTGCTTTCATCACAAATCTTTCATCAGCTTTCTCAAATGATGTTTACGTACTTGACACAAACTGGATACCCGTTCACCCATATAGTCGTTACCACGTTATCCCAACATTTTTTGGCGTCCGAAGTGGAAGATTAAAACTAGAAAAAACTGGTGTTTCAAATTGTCCAGTTACTGTCTTGGAAGAAGATTTCAACAGTGATCATGCTTTATCAGTGAAATTCAACACATTTGATAAAGAAAGCGATGAGATCTTGACGGGTAGACCTATCGAGATTGAGTTCACAAAGAAGCCTGATTGTGTTGAATCATCAAAATGGTTGATATTTATTGATAATGTTATTAATAAATTTTGTGTTGGTATTGGTGGTCCAGAAAACTATCCTGGTATGCAAATAGTGAATGGGACGTTTAATATTCAAAAATATGGTCTTAGTTATAAGTTTGTATTTTGTGTTGATGGATCTTCTAGTTTTTGTTCGAATATTGGGTTTTATAATAATGGTGAAGGAGGAGGACGTTTGATTTTGACAGACCAACAAGTTTCTGCTTTTGTATTTTCTGAGACTATTAATTCTTATGATGATGGAATAATTAAGTCTGTTGCTTGA

Protein sequence

>Msa0993450

MNPTLLTTLYFFLFALATYFPLSFTQFVEQVKDKNGNPVLVTGESGGGLRLNETEECPLVVQQAFSKDVKSLPLTFIPTENINDFIFTGFTSLDIVFEKKTKCAESSKWVVVKGIGGGVNGKSIIDGLFKIERSGFFGYKLMFCPTVSDTPGLCNNIGRFLDNENGVRLIMSNNFQPFEVVFVNVEDVTRSGRSVFLCSLTLSFFLFAFITNLSSAFSNDVYVLDTNWIPVHPYSRYHVIPTFFGVRSGRLKLEKTGVSNCPVTVLEEDFNSDHALSVKFNTFDKESDEILTGRPIEIEFTKKPDCVESSKWLIFIDNVINKFCVGIGGPENYPGMQIVNGTFNIQKYGLSYKFVFCVDGSSSFCSNIGFYNNGEGGGRLILTDQQVSAFVFSETINSYDDGIIKSVA*