AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0993450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0993450 MtrunA17_Chr1g0163381 59.009 222 82 5 196 408 3 224 3.79e-80 246
Msa0993450 MtrunA17_Chr1g0163381 33.498 203 100 13 11 183 11 208 3.98e-11 62.4
Msa0993450 MtrunA17_Chr6g0476821 73.881 134 26 2 71 195 12 145 2.07e-58 187
Msa0993450 MtrunA17_Chr6g0476831 50.935 214 100 4 197 407 4 215 1.74e-55 183
Msa0993450 MtrunA17_Chr6g0476831 34.928 209 107 7 1 185 1 204 5.01e-18 82.8
Msa0993450 MtrunA17_Chr6g0476871 49.758 207 95 5 209 408 16 220 8.76e-50 167
Msa0993450 MtrunA17_Chr6g0476871 35.533 197 92 11 18 185 18 208 3.79e-15 74.3
Msa0993450 MtrunA17_Chr6g0477741 46.231 199 97 6 199 392 6 199 4.30e-46 158
Msa0993450 MtrunA17_Chr6g0477741 37.557 221 102 12 1 195 1 211 7.30e-20 87.4
Msa0993450 MtrunA17_Chr6g0452491 45.813 203 102 5 197 395 4 202 2.00e-44 153
Msa0993450 MtrunA17_Chr6g0452491 36.967 211 98 11 1 185 1 202 1.12e-17 81.3
Msa0993450 MtrunA17_Chr6g0476921 49.038 208 77 9 1 185 1 202 6.38e-41 144
Msa0993450 MtrunA17_Chr6g0476921 41.808 177 95 6 223 394 28 201 1.71e-29 114
Msa0993450 MtrunA17_Chr6g0452521 44.608 204 104 6 197 395 36 235 8.15e-41 145
Msa0993450 MtrunA17_Chr6g0452521 35.714 210 99 12 1 183 33 233 2.58e-14 72.4
Msa0993450 MtrunA17_Chr6g0476791 50.256 195 81 9 197 379 4 194 1.45e-39 140
Msa0993450 MtrunA17_Chr6g0476791 36.321 212 94 14 6 185 9 211 4.77e-15 73.9
Msa0993450 MtrunA17_Chr6g0477751 40.099 202 111 5 197 392 4 201 6.23e-35 128
Msa0993450 MtrunA17_Chr6g0477751 34.529 223 109 12 1 195 1 214 2.23e-16 77.8
Msa0993450 MtrunA17_Chr6g0467611 39.726 219 109 7 1 197 1 218 6.06e-32 120
Msa0993450 MtrunA17_Chr6g0467611 40.678 118 65 3 201 314 8 124 3.34e-15 74.7
Msa0993450 MtrunA17_Chr6g0467621 39.352 216 108 6 1 194 1 215 9.05e-32 120
Msa0993450 MtrunA17_Chr6g0467621 40.678 118 65 3 201 314 8 124 2.77e-14 71.6
Msa0993450 MtrunA17_Chr6g0467761 39.910 223 103 9 1 197 1 218 2.49e-31 119
Msa0993450 MtrunA17_Chr6g0467761 39.831 118 66 3 201 314 8 124 4.72e-14 71.2
Msa0993450 MtrunA17_Chr6g0467771 38.498 213 106 8 1 191 1 210 1.61e-29 114
Msa0993450 MtrunA17_Chr6g0467771 33.500 200 119 9 201 392 8 201 4.08e-14 71.2
Msa0993450 MtrunA17_Chr6g0476961 41.935 217 88 11 1 195 1 201 6.94e-29 112
Msa0993450 MtrunA17_Chr6g0476961 34.762 210 116 9 194 398 4 197 2.63e-14 71.2
Msa0993450 MtrunA17_Chr6g0476951 39.450 218 93 11 1 195 1 202 8.29e-28 108
Msa0993450 MtrunA17_Chr6g0476951 36.765 204 113 9 200 398 6 198 4.73e-17 79.3
Msa0993450 MtrunA17_Chr3g0104591 38.764 178 102 4 215 389 21 194 4.13e-25 102
Msa0993450 MtrunA17_Chr3g0104591 37.634 186 90 8 29 191 27 209 1.71e-22 94.7
Msa0993450 MtrunA17_Chr6g0477281 36.715 207 82 7 1 185 1 180 2.36e-22 93.6
Msa0993450 MtrunA17_Chr6g0477281 42.222 135 76 2 200 332 6 140 1.98e-19 85.5
Msa0993450 MtrunA17_Chr6g0457121 44.660 103 55 1 190 292 22 122 2.17e-17 78.2
Msa0993450 MtrunA17_Chr6g0467781 32.704 159 89 6 46 191 15 168 7.40e-14 69.3
Msa0993450 MtrunA17_Chr6g0481911 25.521 192 132 6 200 385 6 192 9.75e-12 63.9
Msa0993450 MtrunA17_Chr6g0481941 27.136 199 122 7 200 385 6 194 4.19e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 68 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATGATTTCATCTTTAC+TGG 0.216581 6_4:-66002642 Msa0993450:CDS
GGTATTGGTGGTGGTGTTAA+TGG 0.238618 6_4:-66002522 Msa0993450:CDS
AGATTTCTTGATAATGAAAA+TGG 0.268782 6_4:-66002387 Msa0993450:CDS
CCTGGTTTATGTAATAATAT+TGG 0.276379 6_4:-66002411 Msa0993450:CDS
TCCAAGTGGGTGGTAGTTAA+AGG 0.301512 6_4:-66002567 Msa0993450:intron
ATAACGTGGTAACGACTATA+TGG 0.304488 6_4:+65999090 None:intergenic
TTTACGTACTTGACACAAAC+TGG 0.321247 6_4:-65999125 Msa0993450:CDS
TCTTCTTCCAAGACAGTAAC+TGG 0.328731 6_4:+65999003 None:intergenic
ACAAATTGAGTAAAGGATAA+TGG 0.347391 6_4:+66002849 None:intergenic
GGTAAGTAATGTAGGGTTCA+TGG 0.354211 6_4:+66002911 None:intergenic
TATTCAAACTACAGATCTTC+CGG 0.354335 6_4:+66002290 None:intergenic
TTTGATGATTCAACACAATC+AGG 0.357132 6_4:+65998877 None:intergenic
TATTTCTTACTCACAAGAAC+GGG 0.363139 6_4:+66002798 None:intergenic
ATACAAAAGCAGAAACTTGT+TGG 0.404764 6_4:+65998635 None:intergenic
ACTATTAATTCTTATGATGA+TGG 0.412467 6_4:-65998604 Msa0993450:CDS
TAGAGGGTGGTAAGTAATGT+AGG 0.427202 6_4:+66002903 None:intergenic
AATGGTAAGAGTATTATAGA+TGG 0.435603 6_4:-66002504 Msa0993450:CDS
TTAACGAATACAACTTCAAA+GGG 0.441973 6_4:+66002333 None:intergenic
ATTGTGTTGAATCATCAAAA+TGG 0.450042 6_4:-65998873 Msa0993450:CDS
CCATTCACTATTTGCATACC+AGG 0.456745 6_4:+65998787 None:intergenic
ACCTTTAACTACCACCCACT+TGG 0.461157 6_4:+66002566 None:intergenic
AAATTGTCCAGTTACTGTCT+TGG 0.473177 6_4:-65999010 Msa0993450:CDS
GGGCAAAGAGGAAGAAATAG+AGG 0.480997 6_4:+66002886 None:intergenic
TATAATAATGGTGAAGGAGG+AGG 0.481968 6_4:-65998676 Msa0993450:CDS
AATTATTACTCATGATCAAA+CGG 0.482573 6_4:+66002361 None:intergenic
GTTGAAGATGTTACTCGATC+CGG 0.487686 6_4:-66002309 Msa0993450:CDS
CCTGGTATGCAAATAGTGAA+TGG 0.490339 6_4:-65998787 Msa0993450:CDS
ATTAACGAATACAACTTCAA+AGG 0.496588 6_4:+66002332 None:intergenic
TTGGGATAAATGTTAGTGGC+AGG 0.501980 6_4:+66002673 None:intergenic
TCTGTTGGGATAAATGTTAG+TGG 0.504722 6_4:+66002669 None:intergenic
TAATGGAAAGTAGGTGGCTA+GGG 0.507074 6_4:+66002866 None:intergenic
CTGGTATGCAAATAGTGAAT+GGG 0.509468 6_4:-65998786 Msa0993450:CDS
TTTAACTACCACCCACTTGG+AGG 0.510750 6_4:+66002569 None:intergenic
AGTAAAGGATAATGGAAAGT+AGG 0.512041 6_4:+66002857 None:intergenic
CAGTCCACCACCACTTTCAC+CGG 0.513171 6_4:+66002761 None:intergenic
TAACGACTATATGGGTGAAC+GGG 0.513632 6_4:+65999099 None:intergenic
TCAATTTGTTGAACAAGTGA+AGG 0.514281 6_4:-66002835 Msa0993450:CDS
GAACCATGGGTAGGTATTGG+TGG 0.518436 6_4:-66002534 Msa0993450:intron
GGTGGTCCAGAAAACTATCC+TGG 0.544148 6_4:-65998805 Msa0993450:CDS
TTGTTCAACAAATTGAGTAA+AGG 0.544184 6_4:+66002842 None:intergenic
ATTTGGTCAGCCGGTGAAAG+TGG 0.544335 6_4:-66002771 Msa0993450:intron
TAACGTGGTAACGACTATAT+GGG 0.549808 6_4:+65999091 None:intergenic
AAAGCTTGCTGTACAACAAG+TGG 0.555218 6_4:+66002714 None:intergenic
ATAATGGAAAGTAGGTGGCT+AGG 0.557559 6_4:+66002865 None:intergenic
GAAAGCGATGAGATCTTGAC+GGG 0.562459 6_4:-65998931 Msa0993450:CDS
CCATGGGTAGGTATTGGTGG+TGG 0.565594 6_4:-66002531 Msa0993450:intron
TTTGTGAACTCAATCTCGAT+AGG 0.569778 6_4:+65998904 None:intergenic
GTATTTCTTACTCACAAGAA+CGG 0.581176 6_4:+66002797 None:intergenic
TTGTTTAAGATTGAGAGAAG+TGG 0.588206 6_4:-66002480 Msa0993450:CDS
AGAGGGTGGTAAGTAATGTA+GGG 0.588469 6_4:+66002904 None:intergenic
CCAATATTATTACATAAACC+AGG 0.588965 6_4:+66002411 None:intergenic
GTAACGACTATATGGGTGAA+CGG 0.599076 6_4:+65999098 None:intergenic
TCAGCCGGTGAAAGTGGTGG+TGG 0.601771 6_4:-66002765 Msa0993450:intron
GTGAAAGTGGTGGTGGACTG+AGG 0.603007 6_4:-66002758 Msa0993450:CDS
AGAAAGCGATGAGATCTTGA+CGG 0.604733 6_4:-65998932 Msa0993450:CDS
AGTAGGTGGCTAGGGCAAAG+AGG 0.612636 6_4:+66002874 None:intergenic
CCCACCGTCAGTGATACACC+TGG 0.622603 6_4:-66002429 Msa0993450:CDS
AAAGGATAATGGAAAGTAGG+TGG 0.636765 6_4:+66002860 None:intergenic
GGCAAAGAGGAAGAAATAGA+GGG 0.646580 6_4:+66002887 None:intergenic
ACCAGGTGTATCACTGACGG+TGG 0.650819 6_4:+66002428 None:intergenic
AAAGAGGAAGAAATAGAGGG+TGG 0.652446 6_4:+66002890 None:intergenic
TAAACCAGGTGTATCACTGA+CGG 0.677746 6_4:+66002425 None:intergenic
TGGTCAGCCGGTGAAAGTGG+TGG 0.679294 6_4:-66002768 Msa0993450:intron
ATTTCTTACTCACAAGAACG+GGG 0.680212 6_4:+66002799 None:intergenic
TGCTGAATCCTCCAAGTGGG+TGG 0.681258 6_4:-66002577 Msa0993450:CDS
CCAGGTGTATCACTGACGGT+GGG 0.691253 6_4:+66002429 None:intergenic
ATGTGCTGAATCCTCCAAGT+GGG 0.714019 6_4:-66002580 Msa0993450:CDS
AATGTGCTGAATCCTCCAAG+TGG 0.759346 6_4:-66002581 Msa0993450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr6_4:66002187-66002206 Msa0993450:intron 0.0%
!!! TTACTTTTACTAATTAAAAT+TGG - chr6_4:66000945-66000964 Msa0993450:intron 10.0%
!! GATTAAAACAAGTAAAAAAA+AGG + chr6_4:65999540-65999559 None:intergenic 15.0%
!!! TTGATAATAGTTTTATAAAG+AGG + chr6_4:66000063-66000082 None:intergenic 15.0%
!!! TTTATTTATTGTTTTCTCTT+AGG - chr6_4:66000569-66000588 Msa0993450:intron 15.0%
!!! TTATTTATTGTTTTCTCTTA+GGG - chr6_4:66000570-66000589 Msa0993450:intron 15.0%
!! TAATTAAAACTTATACAAGT+TGG + chr6_4:66001048-66001067 None:intergenic 15.0%
!!! TTTTAGTTTCTTAAAAGAAA+TGG + chr6_4:66001175-66001194 None:intergenic 15.0%
!!! TTTCTTTTAAGAAACTAAAA+TGG - chr6_4:66001175-66001194 Msa0993450:intron 15.0%
!!! ATAATTTTTTCCAGATAAAT+CGG + chr6_4:66001446-66001465 None:intergenic 15.0%
!!! TGACAAATTTTTGAAAAATT+AGG + chr6_4:66002102-66002121 None:intergenic 15.0%
!! AACAAGTATAATTAAATCAA+TGG - chr6_4:66002137-66002156 Msa0993450:intron 15.0%
!!! GTTATTAATAAATTTTGTGT+TGG - chr6_4:66002659-66002678 Msa0993450:CDS 15.0%
!! ACGTTTAATATTCAAAAATA+TGG - chr6_4:66002728-66002747 Msa0993450:CDS 15.0%
!!! AATATTGGGTTTTATAATAA+TGG - chr6_4:66002803-66002822 Msa0993450:intron 15.0%
!! TGAGTAAGAAATACTTTATT+TGG - chr6_4:65998703-65998722 Msa0993450:CDS 20.0%
!!! AATCATTGATATTTTCTGTT+GGG + chr6_4:65998839-65998858 None:intergenic 20.0%
!!! AAATCATTGATATTTTCTGT+TGG + chr6_4:65998840-65998859 None:intergenic 20.0%
!!! AGATTTCTTGATAATGAAAA+TGG - chr6_4:65999104-65999123 Msa0993450:CDS 20.0%
!! AATTATTACTCATGATCAAA+CGG + chr6_4:65999133-65999152 None:intergenic 20.0%
!! TCAATAATAAGTTAAGCTTA+CGG - chr6_4:65999318-65999337 Msa0993450:intron 20.0%
!! ACAAGTCAAAAATATTATCT+AGG + chr6_4:65999410-65999429 None:intergenic 20.0%
!!! TTGCTGTTAAAAAAAAAGTT+AGG - chr6_4:65999475-65999494 Msa0993450:intron 20.0%
!! AAAGGTAAAAGGTAAAATAT+TGG + chr6_4:65999522-65999541 None:intergenic 20.0%
!! ACAAGTAAAAAAAAGGTAAA+AGG + chr6_4:65999533-65999552 None:intergenic 20.0%
!! ATGCAAATTAAAATGTCTAA+AGG - chr6_4:65999653-65999672 Msa0993450:intron 20.0%
!! ATGCAAATTAAAATGTCTAA+AGG - chr6_4:65999653-65999672 Msa0993450:intron 20.0%
!!! ACAATTTTAAAGAGTGAAAA+AGG + chr6_4:66000139-66000158 None:intergenic 20.0%
!!! CTCTTTAAAATTGTTGAAAT+TGG - chr6_4:66000145-66000164 Msa0993450:intron 20.0%
!!! TTTAGCTTTGATCAAAAAAA+AGG - chr6_4:66000990-66001009 Msa0993450:intron 20.0%
!! ATCAAAAAAAAGGTCTAATA+TGG - chr6_4:66001000-66001019 Msa0993450:intron 20.0%
!! AAATCTATGTTTCTTAAGAA+TGG - chr6_4:66001103-66001122 Msa0993450:intron 20.0%
!! AGATTAAAACTAGAAAAAAC+TGG - chr6_4:66002452-66002471 Msa0993450:CDS 20.0%
!!! AATAAATTTTGTGTTGGTAT+TGG - chr6_4:66002665-66002684 Msa0993450:CDS 20.0%
!! ACTATTAATTCTTATGATGA+TGG - chr6_4:66002887-66002906 Msa0993450:CDS 20.0%
! ACAAATTGAGTAAAGGATAA+TGG + chr6_4:65998645-65998664 None:intergenic 25.0%
! TTGTTCAACAAATTGAGTAA+AGG + chr6_4:65998652-65998671 None:intergenic 25.0%
! ATCAATGATTTCATCTTTAC+TGG - chr6_4:65998849-65998868 Msa0993450:CDS 25.0%
!!! AATGGTAAGAGTATTATAGA+TGG - chr6_4:65998987-65999006 Msa0993450:CDS 25.0%
! CCAATATTATTACATAAACC+AGG + chr6_4:65999083-65999102 None:intergenic 25.0%
! CCTGGTTTATGTAATAATAT+TGG - chr6_4:65999080-65999099 Msa0993450:CDS 25.0%
! TTAACGAATACAACTTCAAA+GGG + chr6_4:65999161-65999180 None:intergenic 25.0%
! ATTAACGAATACAACTTCAA+AGG + chr6_4:65999162-65999181 None:intergenic 25.0%
! TATTCAAACTACAGATCTTT+CGG + chr6_4:65999281-65999300 None:intergenic 25.0%
!!! GTTTCTAAGTTTTAGTCTAA+AGG - chr6_4:65999561-65999580 Msa0993450:intron 25.0%
!!! ATCTGTTTCTAAAAGTCTAA+AGG - chr6_4:65999607-65999626 Msa0993450:intron 25.0%
!!! ATCTGTTTCTAAAAGTCTAA+AGG - chr6_4:65999607-65999626 Msa0993450:intron 25.0%
! GGTAAGTTCTCAATATTATT+GGG + chr6_4:66000118-66000137 None:intergenic 25.0%
! AGGTAAGTTCTCAATATTAT+TGG + chr6_4:66000119-66000138 None:intergenic 25.0%
!!! TTTTGGTTCAGCTTTAATTT+TGG - chr6_4:66000229-66000248 Msa0993450:intron 25.0%
! TCATTAGAGGAATTATCAAA+AGG - chr6_4:66000545-66000564 Msa0993450:intron 25.0%
! TAGATGTATAGAGTAAAAGA+AGG + chr6_4:66000825-66000844 None:intergenic 25.0%
! AAATTGGTGTAAGTTTAAAG+TGG - chr6_4:66000961-66000980 Msa0993450:intron 25.0%
!! TTAAAACTTATACAAGTTGG+AGG + chr6_4:66001045-66001064 None:intergenic 25.0%
! TATTAAACTACTCAAGTACA+AGG - chr6_4:66001202-66001221 Msa0993450:intron 25.0%
! TGTAAATTCATTGTCAAATC+AGG - chr6_4:66001566-66001585 Msa0993450:intron 25.0%
! GTAAATTCATTGTCAAATCA+GGG - chr6_4:66001567-66001586 Msa0993450:intron 25.0%
! TAAATTCATTGTCAAATCAG+GGG - chr6_4:66001568-66001587 Msa0993450:intron 25.0%
! TGAAACAAATTATCTTTGGT+CGG - chr6_4:66001738-66001757 Msa0993450:intron 25.0%
!!! TAATTAAATCAATGGACTAG+AGG - chr6_4:66002145-66002164 Msa0993450:intron 25.0%
! ATATATATATATATAGGCCG+AGG - chr6_4:66002209-66002228 Msa0993450:intron 25.0%
! ATTGTGTTGAATCATCAAAA+TGG - chr6_4:66002618-66002637 Msa0993450:CDS 25.0%
!! AAGTTTGTATTTTGTGTTGA+TGG - chr6_4:66002761-66002780 Msa0993450:CDS 25.0%
!!! TCTAGTTTTTGTTCGAATAT+TGG - chr6_4:66002788-66002807 Msa0993450:intron 25.0%
!!! CTAGTTTTTGTTCGAATATT+GGG - chr6_4:66002789-66002808 Msa0993450:intron 25.0%
!! TTTTATAATAATGGTGAAGG+AGG - chr6_4:66002812-66002831 Msa0993450:CDS 25.0%
!! AGTAAAGGATAATGGAAAGT+AGG + chr6_4:65998637-65998656 None:intergenic 30.0%
!! TCAATTTGTTGAACAAGTGA+AGG - chr6_4:65998656-65998675 Msa0993450:CDS 30.0%
GAACAAGTGAAGGATAAAAA+TGG - chr6_4:65998666-65998685 Msa0993450:CDS 30.0%
TATTTCTTACTCACAAGAAC+GGG + chr6_4:65998696-65998715 None:intergenic 30.0%
GTATTTCTTACTCACAAGAA+CGG + chr6_4:65998697-65998716 None:intergenic 30.0%
! AAATACTTTATTTGGTCAGC+CGG - chr6_4:65998711-65998730 Msa0993450:CDS 30.0%
! TTGTTTAAGATTGAGAGAAG+TGG - chr6_4:65999011-65999030 Msa0993450:CDS 30.0%
!!! ATTGAGAGAAGTGGTTTTTT+TGG - chr6_4:65999020-65999039 Msa0993450:CDS 30.0%
TATTCAAACTACAGATCTTC+CGG + chr6_4:65999204-65999223 None:intergenic 30.0%
TCAACGAATACAACTTCAAA+GGG + chr6_4:65999238-65999257 None:intergenic 30.0%
ATCAACGAATACAACTTCAA+AGG + chr6_4:65999239-65999258 None:intergenic 30.0%
! TATTTTGTCGTGATTTAGTG+TGG - chr6_4:65999360-65999379 Msa0993450:intron 30.0%
! ATTTTGTCGTGATTTAGTGT+GGG - chr6_4:65999361-65999380 Msa0993450:intron 30.0%
CAGCAAGAACTTTATTAGAT+AGG + chr6_4:65999461-65999480 None:intergenic 30.0%
GGTAAAAGGTAAAATATTGG+TGG + chr6_4:65999519-65999538 None:intergenic 30.0%
TCCTTACAAAATCACTTGTA+AGG - chr6_4:65999817-65999836 Msa0993450:intron 30.0%
! ACCTTACAAGTGATTTTGTA+AGG + chr6_4:65999821-65999840 None:intergenic 30.0%
!! GTTTGGTGTGTGTATATAAA+TGG - chr6_4:65999941-65999960 Msa0993450:intron 30.0%
AAAAACCGTGTTAGAAATTG+TGG - chr6_4:65999987-66000006 Msa0993450:intron 30.0%
GTAACACAACTTCACAAATT+CGG - chr6_4:66000016-66000035 Msa0993450:intron 30.0%
!!! ACTTATTTTGAGCTCCAATA+TGG - chr6_4:66000328-66000347 Msa0993450:intron 30.0%
CTTATATAGAGTTATGATCC+AGG + chr6_4:66000385-66000404 None:intergenic 30.0%
CTGGATCATAACTCTATATA+AGG - chr6_4:66000383-66000402 Msa0993450:intron 30.0%
GAATCTTCAAAAACCAAATG+AGG - chr6_4:66000444-66000463 Msa0993450:intron 30.0%
!! AACTCTAAAGTTACCTCATT+TGG + chr6_4:66000460-66000479 None:intergenic 30.0%
!! AAATGAGGTAACTTTAGAGT+TGG - chr6_4:66000459-66000478 Msa0993450:intron 30.0%
ACCTTGAGTAACTTGAAAAT+GGG - chr6_4:66000602-66000621 Msa0993450:intron 30.0%
CACTATTTATTTACCTAGCA+CGG + chr6_4:66000725-66000744 None:intergenic 30.0%
AAACCTAGATCTTAGTGTAA+AGG + chr6_4:66000758-66000777 None:intergenic 30.0%
! TAAGATCTAGGTTTGTTTGT+TGG - chr6_4:66000764-66000783 Msa0993450:intron 30.0%
TCAAACAAATAGTTCAATGG+TGG + chr6_4:66001135-66001154 None:intergenic 30.0%
ACCATTGAACTATTTGTTTG+AGG - chr6_4:66001134-66001153 Msa0993450:intron 30.0%
ACCTCAAACAAATAGTTCAA+TGG + chr6_4:66001138-66001157 None:intergenic 30.0%
! ATTTGTTTGAGGTCCATATT+AGG - chr6_4:66001145-66001164 Msa0993450:intron 30.0%
AAGAAATGGTAAGCCTAATA+TGG + chr6_4:66001161-66001180 None:intergenic 30.0%
ACAATGCACATACACAATAA+AGG - chr6_4:66001316-66001335 Msa0993450:intron 30.0%
CAATGCACATACACAATAAA+GGG - chr6_4:66001317-66001336 Msa0993450:intron 30.0%
ATTTGTCCTTTGATTACCAT+AGG + chr6_4:66001354-66001373 None:intergenic 30.0%
TGGTAATCAAAGGACAAATT+AGG - chr6_4:66001355-66001374 Msa0993450:intron 30.0%
AAATTCATTGTCAAATCAGG+GGG - chr6_4:66001569-66001588 Msa0993450:intron 30.0%
AAAAGGAACAATCCAAGAAT+AGG - chr6_4:66001646-66001665 Msa0993450:intron 30.0%
GCGTTGAAACAAATTATCTT+TGG - chr6_4:66001734-66001753 Msa0993450:intron 30.0%
TCAAAAATTTGTCACATGCT+AGG - chr6_4:66002108-66002127 Msa0993450:intron 30.0%
AGCAAAAAGAAAGAAGGAAA+GGG + chr6_4:66002309-66002328 None:intergenic 30.0%
AAGCAAAAAGAAAGAAGGAA+AGG + chr6_4:66002310-66002329 None:intergenic 30.0%
GATGAAAGCAAAAAGAAAGA+AGG + chr6_4:66002315-66002334 None:intergenic 30.0%
!!! CTAGTTTTAATCTTCCACTT+CGG + chr6_4:66002445-66002464 None:intergenic 30.0%
! TTTGATGATTCAACACAATC+AGG + chr6_4:66002617-66002636 None:intergenic 30.0%
!! AAATTTTGTGTTGGTATTGG+TGG - chr6_4:66002668-66002687 Msa0993450:CDS 30.0%
!! GGGTTTTATAATAATGGTGA+AGG - chr6_4:66002809-66002828 Msa0993450:CDS 30.0%
ATACAAAAGCAGAAACTTGT+TGG + chr6_4:66002859-66002878 None:intergenic 30.0%
!! AAAGGATAATGGAAAGTAGG+TGG + chr6_4:65998634-65998653 None:intergenic 35.0%
ATTTCTTACTCACAAGAACG+GGG + chr6_4:65998695-65998714 None:intergenic 35.0%
!! TGTACAGCAAGCTTTTTCTA+AGG - chr6_4:65998785-65998804 Msa0993450:CDS 35.0%
TCTGTTGGGATAAATGTTAG+TGG + chr6_4:65998825-65998844 None:intergenic 35.0%
GTTGTATTCGTTGATGTTGA+AGG - chr6_4:65999244-65999263 Msa0993450:intron 35.0%
CACGACAAAATACAAAGCAA+GGG + chr6_4:65999352-65999371 None:intergenic 35.0%
TCACGACAAAATACAAAGCA+AGG + chr6_4:65999353-65999372 None:intergenic 35.0%
! ATTTAGTGTGGGTGTCTTTT+TGG - chr6_4:65999372-65999391 Msa0993450:intron 35.0%
TCTAAAGGCGAAATGTCTAA+AGG - chr6_4:65999622-65999641 Msa0993450:intron 35.0%
TCTAAAGGCGAAATGTCTAA+AGG - chr6_4:65999622-65999641 Msa0993450:intron 35.0%
AGAGTCATATCTATTCGATG+TGG - chr6_4:65999873-65999892 Msa0993450:intron 35.0%
GAGTCATATCTATTCGATGT+GGG - chr6_4:65999874-65999893 Msa0993450:intron 35.0%
TGGTGTGTGTATATAAATGG+TGG - chr6_4:65999944-65999963 Msa0993450:intron 35.0%
GGTGTGTGTATATAAATGGT+GGG - chr6_4:65999945-65999964 Msa0993450:intron 35.0%
!! TGGTTCAGCTTTAATTTTGG+AGG - chr6_4:66000232-66000251 Msa0993450:intron 35.0%
TTGATTCTGCCAGAAAATCA+TGG - chr6_4:66000255-66000274 Msa0993450:intron 35.0%
TAATGAGATCTTACTACCCA+AGG + chr6_4:66000531-66000550 None:intergenic 35.0%
GACCTTGAGTAACTTGAAAA+TGG - chr6_4:66000601-66000620 Msa0993450:intron 35.0%
!!! ACCCATTTTCAAGTTACTCA+AGG + chr6_4:66000606-66000625 None:intergenic 35.0%
CTTGAAAATGGGTAGAGATT+AGG - chr6_4:66000613-66000632 Msa0993450:intron 35.0%
! ACCTAGCTCTTTGTATTACT+CGG - chr6_4:66000674-66000693 Msa0993450:intron 35.0%
CGTGCTAGGTAAATAAATAG+TGG - chr6_4:66000723-66000742 Msa0993450:intron 35.0%
GTTCCTTTACACTAAGATCT+AGG - chr6_4:66000752-66000771 Msa0993450:intron 35.0%
GAGTAAAAGAAGGAGTAATC+AGG + chr6_4:66000815-66000834 None:intergenic 35.0%
CTAATATGGACCTGATTCAA+TGG - chr6_4:66001014-66001033 Msa0993450:intron 35.0%
! GTAATACTTTTGTGACCGTT+TGG + chr6_4:66001243-66001262 None:intergenic 35.0%
TTGTGCATATAGGTTAACTC+TGG + chr6_4:66001300-66001319 None:intergenic 35.0%
TGTATGTGCATTGTGCATAT+AGG + chr6_4:66001310-66001329 None:intergenic 35.0%
!! TATCTCGTTTTGGTGGTTAA+AGG + chr6_4:66001389-66001408 None:intergenic 35.0%
! TTAAGCTTATCTCGTTTTGG+TGG + chr6_4:66001396-66001415 None:intergenic 35.0%
! GTGTTAAGCTTATCTCGTTT+TGG + chr6_4:66001399-66001418 None:intergenic 35.0%
ACTATCAATAAGCTGAAGAG+TGG - chr6_4:66001417-66001436 Msa0993450:intron 35.0%
GTGTTTGGCTAGTAATGATT+TGG + chr6_4:66001508-66001527 None:intergenic 35.0%
TTTCCAAATCTCATCGTGTT+TGG + chr6_4:66001523-66001542 None:intergenic 35.0%
AATTCATTGTCAAATCAGGG+GGG - chr6_4:66001570-66001589 Msa0993450:intron 35.0%
CTGTAACAATTCCTAACCAA+CGG - chr6_4:66001598-66001617 Msa0993450:intron 35.0%
! ATTGATGTTTACCGTTGGTT+AGG + chr6_4:66001612-66001631 None:intergenic 35.0%
TTTGGATTGATGTTTACCGT+TGG + chr6_4:66001617-66001636 None:intergenic 35.0%
AACGGTAAACATCAATCCAA+AGG - chr6_4:66001616-66001635 Msa0993450:intron 35.0%
ACGGTAAACATCAATCCAAA+GGG - chr6_4:66001617-66001636 Msa0993450:intron 35.0%
AATCCAAAGGGCTACAAAAA+AGG - chr6_4:66001629-66001648 Msa0993450:intron 35.0%
GATGATCAGATGTGTATTTC+AGG + chr6_4:66001699-66001718 None:intergenic 35.0%
CAATTATTGCTTAGTCAGCT+TGG + chr6_4:66002031-66002050 None:intergenic 35.0%
! ATATCGTTTGTGTGCTTTTG+TGG + chr6_4:66002248-66002267 None:intergenic 35.0%
TTTACGTACTTGACACAAAC+TGG - chr6_4:66002366-66002385 Msa0993450:CDS 35.0%
! TAACGTGGTAACGACTATAT+GGG + chr6_4:66002403-66002422 None:intergenic 35.0%
! ATAACGTGGTAACGACTATA+TGG + chr6_4:66002404-66002423 None:intergenic 35.0%
CAAAAAATGTTGGGATAACG+TGG + chr6_4:66002418-66002437 None:intergenic 35.0%
!!! CACGTTATCCCAACATTTTT+TGG - chr6_4:66002416-66002435 Msa0993450:CDS 35.0%
AAATTGTCCAGTTACTGTCT+TGG - chr6_4:66002481-66002500 Msa0993450:CDS 35.0%
TTTGTGAACTCAATCTCGAT+AGG + chr6_4:66002590-66002609 None:intergenic 35.0%
CTGGTATGCAAATAGTGAAT+GGG - chr6_4:66002705-66002724 Msa0993450:CDS 35.0%
TATAATAATGGTGAAGGAGG+AGG - chr6_4:66002815-66002834 Msa0993450:CDS 35.0%
AGAGGGTGGTAAGTAATGTA+GGG + chr6_4:65998590-65998609 None:intergenic 40.0%
TAGAGGGTGGTAAGTAATGT+AGG + chr6_4:65998591-65998610 None:intergenic 40.0%
AAAGAGGAAGAAATAGAGGG+TGG + chr6_4:65998604-65998623 None:intergenic 40.0%
GGCAAAGAGGAAGAAATAGA+GGG + chr6_4:65998607-65998626 None:intergenic 40.0%
TAATGGAAAGTAGGTGGCTA+GGG + chr6_4:65998628-65998647 None:intergenic 40.0%
! ATAATGGAAAGTAGGTGGCT+AGG + chr6_4:65998629-65998648 None:intergenic 40.0%
!! AAAGCTTGCTGTACAACAAG+TGG + chr6_4:65998780-65998799 None:intergenic 40.0%
TTGGGATAAATGTTAGTGGC+AGG + chr6_4:65998821-65998840 None:intergenic 40.0%
AAGGTGGTTTCATTGAACCA+TGG - chr6_4:65998943-65998962 Msa0993450:CDS 40.0%
AGGTGGTTTCATTGAACCAT+GGG - chr6_4:65998944-65998963 Msa0993450:CDS 40.0%
ATTGAACCATGGGTAGGTAT+TGG - chr6_4:65998954-65998973 Msa0993450:CDS 40.0%
TAAACCAGGTGTATCACTGA+CGG + chr6_4:65999069-65999088 None:intergenic 40.0%
GTTGAAGATGTTACTCGATC+CGG - chr6_4:65999182-65999201 Msa0993450:CDS 40.0%
TTAGGCCAACCCAATTCTTT+GGG - chr6_4:65999493-65999512 Msa0993450:intron 40.0%
! TATTGGTGGCCCAAAGAATT+GGG + chr6_4:65999505-65999524 None:intergenic 40.0%
! ATATTGGTGGCCCAAAGAAT+TGG + chr6_4:65999506-65999525 None:intergenic 40.0%
TATCTATTCGATGTGGGACT+AGG - chr6_4:65999880-65999899 Msa0993450:intron 40.0%
ATCTATTCGATGTGGGACTA+GGG - chr6_4:65999881-65999900 Msa0993450:intron 40.0%
! GTGTGTATATAAATGGTGGG+TGG - chr6_4:65999948-65999967 Msa0993450:intron 40.0%
CCTCACCACAATTTCTAACA+CGG + chr6_4:65999995-66000014 None:intergenic 40.0%
! CTTCACAAATTCGGCTTGTA+AGG - chr6_4:66000025-66000044 Msa0993450:intron 40.0%
GTGCACAAAATGAGAAATCG+TGG - chr6_4:66000201-66000220 Msa0993450:intron 40.0%
TTGTCTGGATCGTACCATAT+TGG + chr6_4:66000345-66000364 None:intergenic 40.0%
AAATCGTGTCACGATTTGTC+TGG + chr6_4:66000360-66000379 None:intergenic 40.0%
!! TGAGGTAACTTTAGAGTTGG+AGG - chr6_4:66000462-66000481 Msa0993450:intron 40.0%
GTCTTTGATGAGAGGTTCTT+GGG - chr6_4:66000484-66000503 Msa0993450:intron 40.0%
AAACACTTCACAAACGCCTT+GGG - chr6_4:66000512-66000531 Msa0993450:intron 40.0%
GGGTAGTAAGATCTCATTAG+AGG - chr6_4:66000532-66000551 Msa0993450:intron 40.0%
ACCGAGTAATACAAAGAGCT+AGG + chr6_4:66000678-66000697 None:intergenic 40.0%
CGAATAAATTTGTCCGTGCT+AGG - chr6_4:66000709-66000728 Msa0993450:intron 40.0%
TGTCCTTTGATTACCATAGG+TGG + chr6_4:66001351-66001370 None:intergenic 40.0%
GCGCTTGCATTTGGATTATT+TGG + chr6_4:66001484-66001503 None:intergenic 40.0%
TAGCCAAACACGATGAGATT+TGG - chr6_4:66001517-66001536 Msa0993450:intron 40.0%
CAGCAGTTTGTGCATATTGT+TGG + chr6_4:66001548-66001567 None:intergenic 40.0%
ATTCATTGTCAAATCAGGGG+GGG - chr6_4:66001571-66001590 Msa0993450:intron 40.0%
!!! GTTCCTTTTTTGTAGCCCTT+TGG + chr6_4:66001635-66001654 None:intergenic 40.0%
!! TATTTCAGGTTGTGGTCAGT+CGG + chr6_4:66001685-66001704 None:intergenic 40.0%
!! CAGATGTGTATTTCAGGTTG+TGG + chr6_4:66001693-66001712 None:intergenic 40.0%
GATCATCGACAGAGATAATG+CGG - chr6_4:66001712-66001731 Msa0993450:intron 40.0%
TGTTTGTTTGGCGTCTCTTA+CGG + chr6_4:66001773-66001792 None:intergenic 40.0%
TAAGAGACGCCAAACAAACA+AGG - chr6_4:66001773-66001792 Msa0993450:intron 40.0%
!! TGAAGGTGTCCTTGTTTGTT+TGG + chr6_4:66001785-66001804 None:intergenic 40.0%
TCTGCAGTTTATACAGTGAG+AGG + chr6_4:66001888-66001907 None:intergenic 40.0%
CTCACTGTATAAACTGCAGA+AGG - chr6_4:66001888-66001907 Msa0993450:intron 40.0%
GTATAAACTGCAGAAGGAAC+CGG - chr6_4:66001894-66001913 Msa0993450:intron 40.0%
AGTGTTCAGACAAATGGGAT+TGG + chr6_4:66001923-66001942 None:intergenic 40.0%
GGTTCAGTGTTCAGACAAAT+GGG + chr6_4:66001928-66001947 None:intergenic 40.0%
AGGTTCAGTGTTCAGACAAA+TGG + chr6_4:66001929-66001948 None:intergenic 40.0%
ACTTTCTGATGTGACTTTGC+AGG + chr6_4:66001949-66001968 None:intergenic 40.0%
TCACATGCTAATTGTTCACG+TGG - chr6_4:66002073-66002092 Msa0993450:intron 40.0%
TAACGACTATATGGGTGAAC+GGG + chr6_4:66002395-66002414 None:intergenic 40.0%
GTAACGACTATATGGGTGAA+CGG + chr6_4:66002396-66002415 None:intergenic 40.0%
TTCGGACGCCAAAAAATGTT+GGG + chr6_4:66002427-66002446 None:intergenic 40.0%
TCTTCTTCCAAGACAGTAAC+TGG + chr6_4:66002491-66002510 None:intergenic 40.0%
AGAAAGCGATGAGATCTTGA+CGG - chr6_4:66002559-66002578 Msa0993450:intron 40.0%
! TGCATACCAGGATAGTTTTC+TGG + chr6_4:66002695-66002714 None:intergenic 40.0%
CCATTCACTATTTGCATACC+AGG + chr6_4:66002707-66002726 None:intergenic 40.0%
CCTGGTATGCAAATAGTGAA+TGG - chr6_4:66002704-66002723 Msa0993450:CDS 40.0%
GGGCAAAGAGGAAGAAATAG+AGG + chr6_4:65998608-65998627 None:intergenic 45.0%
AATGTGCTGAATCCTCCAAG+TGG - chr6_4:65998910-65998929 Msa0993450:CDS 45.0%
ATGTGCTGAATCCTCCAAGT+GGG - chr6_4:65998911-65998930 Msa0993450:CDS 45.0%
TTTAACTACCACCCACTTGG+AGG + chr6_4:65998925-65998944 None:intergenic 45.0%
TCCAAGTGGGTGGTAGTTAA+AGG - chr6_4:65998924-65998943 Msa0993450:CDS 45.0%
ACCTTTAACTACCACCCACT+TGG + chr6_4:65998928-65998947 None:intergenic 45.0%
AAGTGGGTGGTAGTTAAAGG+TGG - chr6_4:65998927-65998946 Msa0993450:CDS 45.0%
GGTTTCATTGAACCATGGGT+AGG - chr6_4:65998948-65998967 Msa0993450:CDS 45.0%
!! GGTATTGGTGGTGGTGTTAA+TGG - chr6_4:65998969-65998988 Msa0993450:CDS 45.0%
ACTACAGATCTTTCGGATCG+AGG + chr6_4:65999274-65999293 None:intergenic 45.0%
! TAGTGTGGGTGTCTTTTTGG+TGG - chr6_4:65999375-65999394 Msa0993450:intron 45.0%
GTTAGGCCAACCCAATTCTT+TGG - chr6_4:65999492-65999511 Msa0993450:intron 45.0%
!! GGTTTTTGAGCCAATCGATC+GGG + chr6_4:65999974-65999993 None:intergenic 45.0%
!! CGGTTTTTGAGCCAATCGAT+CGG + chr6_4:65999975-65999994 None:intergenic 45.0%
CCGTGTTAGAAATTGTGGTG+AGG - chr6_4:65999992-66000011 Msa0993450:intron 45.0%
! CAAATTCGGCTTGTAAGGTG+AGG - chr6_4:66000030-66000049 Msa0993450:intron 45.0%
! GAGAAATCGTGGCACGATTT+TGG - chr6_4:66000212-66000231 Msa0993450:intron 45.0%
! TCCTTCGTGCCATGATTTTC+TGG + chr6_4:66000267-66000286 None:intergenic 45.0%
TGGCACGAAGGATGTAATCA+TGG - chr6_4:66000275-66000294 Msa0993450:intron 45.0%
CGAAGGATGTAATCATGGCA+CGG - chr6_4:66000280-66000299 Msa0993450:intron 45.0%
! GTAATCATGGCACGGTTTTG+AGG - chr6_4:66000288-66000307 Msa0993450:intron 45.0%
! AATCGTGACACGATTTTGCC+TGG - chr6_4:66000364-66000383 Msa0993450:intron 45.0%
AGTTGGAGGTCTTTGATGAG+AGG - chr6_4:66000476-66000495 Msa0993450:intron 45.0%
GGTCTTTGATGAGAGGTTCT+TGG - chr6_4:66000483-66000502 Msa0993450:intron 45.0%
GAAACACTTCACAAACGCCT+TGG - chr6_4:66000511-66000530 Msa0993450:intron 45.0%
TCAAGTACAAGGTGTGCCAA+AGG - chr6_4:66001213-66001232 Msa0993450:intron 45.0%
CAAGTACAAGGTGTGCCAAA+GGG - chr6_4:66001214-66001233 Msa0993450:intron 45.0%
CCTTTGATTACCATAGGTGG+TGG + chr6_4:66001348-66001367 None:intergenic 45.0%
CCACCACCTATGGTAATCAA+AGG - chr6_4:66001345-66001364 Msa0993450:intron 45.0%
! AGAGTGGAAGCCGATTTATC+TGG - chr6_4:66001433-66001452 Msa0993450:intron 45.0%
!! TGATTTGGTGCGCTTGCATT+TGG + chr6_4:66001493-66001512 None:intergenic 45.0%
AACGGCTAGACACCTATTCT+TGG + chr6_4:66001661-66001680 None:intergenic 45.0%
GTTTGTTTGGCGTCTCTTAC+GGG + chr6_4:66001772-66001791 None:intergenic 45.0%
GCAGCGACATATTTCGTTGA+AGG + chr6_4:66001802-66001821 None:intergenic 45.0%
CAGTAGTGCCAGATGCTATA+TGG + chr6_4:66001824-66001843 None:intergenic 45.0%
GCACTACTGCATGAAGAGAA+GGG - chr6_4:66001835-66001854 Msa0993450:intron 45.0%
!! AGACAAATGGGATTGGTCTC+CGG + chr6_4:66001916-66001935 None:intergenic 45.0%
! TGTGCTTTTGTGGAGTGGAT+TGG + chr6_4:66002238-66002257 None:intergenic 45.0%
! GTTTGTGTGCTTTTGTGGAG+TGG + chr6_4:66002243-66002262 None:intergenic 45.0%
CTTCGGACGCCAAAAAATGT+TGG + chr6_4:66002428-66002447 None:intergenic 45.0%
!!! ACATTTTTTGGCGTCCGAAG+TGG - chr6_4:66002428-66002447 Msa0993450:CDS 45.0%
GAAAGCGATGAGATCTTGAC+GGG - chr6_4:66002560-66002579 Msa0993450:intron 45.0%
ATTTGGTCAGCCGGTGAAAG+TGG - chr6_4:65998720-65998739 Msa0993450:CDS 50.0%
!! GAACCATGGGTAGGTATTGG+TGG - chr6_4:65998957-65998976 Msa0993450:CDS 50.0%
ATGTCCAGCACTCTTGGGTT+TGG - chr6_4:65999924-65999943 Msa0993450:intron 50.0%
GCCAGAAAATCATGGCACGA+AGG - chr6_4:66000263-66000282 Msa0993450:intron 50.0%
TGATGAGAGGTTCTTGGGCT+AGG - chr6_4:66000489-66000508 Msa0993450:intron 50.0%
GGAGGCTTCACCATTGAATC+AGG + chr6_4:66001027-66001046 None:intergenic 50.0%
TGTGCCAAAGGGTCACCAAA+CGG - chr6_4:66001225-66001244 Msa0993450:intron 50.0%
AGGTTGTGGTCAGTCGGAAA+CGG + chr6_4:66001679-66001698 None:intergenic 50.0%
TGTCGCTGCCATATAGCATC+TGG - chr6_4:66001813-66001832 Msa0993450:intron 50.0%
GGCACTACTGCATGAAGAGA+AGG - chr6_4:66001834-66001853 Msa0993450:intron 50.0%
ATGAAGAGAAGGGCCATCAC+TGG - chr6_4:66001845-66001864 Msa0993450:intron 50.0%
TACGCTCTTCTCACCAGTGA+TGG + chr6_4:66001861-66001880 None:intergenic 50.0%
! ATCACTGGTGAGAAGAGCGT+AGG - chr6_4:66001860-66001879 Msa0993450:intron 50.0%
TTGCTTAGTCAGCTTGGCGA+TGG + chr6_4:66002025-66002044 None:intergenic 50.0%
!! GTGGAGTGGATTGGTTACCT+CGG + chr6_4:66002229-66002248 None:intergenic 50.0%
GGTGGTCCAGAAAACTATCC+TGG - chr6_4:66002686-66002705 Msa0993450:CDS 50.0%
AGTAGGTGGCTAGGGCAAAG+AGG + chr6_4:65998620-65998639 None:intergenic 55.0%
CAGTCCACCACCACTTTCAC+CGG + chr6_4:65998733-65998752 None:intergenic 55.0%
!! GTGAAAGTGGTGGTGGACTG+AGG - chr6_4:65998733-65998752 Msa0993450:CDS 55.0%
TGCTGAATCCTCCAAGTGGG+TGG - chr6_4:65998914-65998933 Msa0993450:CDS 55.0%
CCACCACCAATACCTACCCA+TGG + chr6_4:65998963-65998982 None:intergenic 55.0%
!! CCATGGGTAGGTATTGGTGG+TGG - chr6_4:65998960-65998979 Msa0993450:CDS 55.0%
CCAGGTGTATCACTGACGGT+GGG + chr6_4:65999065-65999084 None:intergenic 55.0%
ACCAGGTGTATCACTGACGG+TGG + chr6_4:65999066-65999085 None:intergenic 55.0%
GGTGGCCCAAAGAATTGGGT+TGG + chr6_4:65999501-65999520 None:intergenic 55.0%
! GCTGGACATGAGGGGTGTAT+GGG + chr6_4:65999913-65999932 None:intergenic 55.0%
! TGCTGGACATGAGGGGTGTA+TGG + chr6_4:65999914-65999933 None:intergenic 55.0%
!! CCAAGAGTGCTGGACATGAG+GGG + chr6_4:65999921-65999940 None:intergenic 55.0%
!! CCCAAGAGTGCTGGACATGA+GGG + chr6_4:65999922-65999941 None:intergenic 55.0%
CCCTCATGTCCAGCACTCTT+GGG - chr6_4:65999919-65999938 Msa0993450:intron 55.0%
!! ACCCAAGAGTGCTGGACATG+AGG + chr6_4:65999923-65999942 None:intergenic 55.0%
! CACACCAAACCCAAGAGTGC+TGG + chr6_4:65999931-65999950 None:intergenic 55.0%
! GTGACCGTTTGGTGACCCTT+TGG + chr6_4:66001232-66001251 None:intergenic 55.0%
AAGGGCTAAGCCACCACCTA+TGG - chr6_4:66001335-66001354 Msa0993450:intron 55.0%
CTTAGTCAGCTTGGCGATGG+AGG + chr6_4:66002022-66002041 None:intergenic 55.0%
TGGTCAGCCGGTGAAAGTGG+TGG - chr6_4:65998723-65998742 Msa0993450:CDS 60.0%
TCAGCCGGTGAAAGTGGTGG+TGG - chr6_4:65998726-65998745 Msa0993450:CDS 60.0%
CCCACCGTCAGTGATACACC+TGG - chr6_4:65999062-65999081 Msa0993450:CDS 60.0%
CCCCTCATGTCCAGCACTCT+TGG - chr6_4:65999918-65999937 Msa0993450:intron 60.0%
GAGGAGGAGTTTGCGCACGT+GGG + chr6_4:66002003-66002022 None:intergenic 60.0%
AGTCAGCTTGGCGATGGAGG+AGG + chr6_4:66002019-66002038 None:intergenic 60.0%
! TGGTGGGTGGCCCGATCGAT+TGG - chr6_4:65999961-65999980 Msa0993450:intron 65.0%
GAGGAGTTTGCGCACGTGGG+AGG + chr6_4:66002000-66002019 None:intergenic 65.0%
GGAGGAGGAGTTTGCGCACG+TGG + chr6_4:66002004-66002023 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 65998582 66002931 65998582 ID=Msa0993450;Name=Msa0993450
chr6_4 mRNA 65998582 66002931 65998582 ID=Msa0993450-mRNA-1;Parent=Msa0993450;Name=Msa0993450-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|0|0|4|0|408
chr6_4 exon 66002808 66002931 66002808 ID=Msa0993450-mRNA-1:exon:12357;Parent=Msa0993450-mRNA-1
chr6_4 exon 66002568 66002783 66002568 ID=Msa0993450-mRNA-1:exon:12356;Parent=Msa0993450-mRNA-1
chr6_4 exon 66002299 66002543 66002299 ID=Msa0993450-mRNA-1:exon:12355;Parent=Msa0993450-mRNA-1
chr6_4 exon 65998582 65999223 65998582 ID=Msa0993450-mRNA-1:exon:12354;Parent=Msa0993450-mRNA-1
chr6_4 CDS 66002808 66002931 66002808 ID=Msa0993450-mRNA-1:cds;Parent=Msa0993450-mRNA-1
chr6_4 CDS 66002568 66002783 66002568 ID=Msa0993450-mRNA-1:cds;Parent=Msa0993450-mRNA-1
chr6_4 CDS 66002299 66002543 66002299 ID=Msa0993450-mRNA-1:cds;Parent=Msa0993450-mRNA-1
chr6_4 CDS 65998582 65999223 65998582 ID=Msa0993450-mRNA-1:cds;Parent=Msa0993450-mRNA-1
Gene Sequence

>Msa0993450

ATGAACCCTACATTACTTACCACCCTCTATTTCTTCCTCTTTGCCCTAGCCACCTACTTTCCATTATCCTTTACTCAATTTGTTGAACAAGTGAAGGATAAAAATGGAAACCCCGTTCTTGTGACCGGTGAAAGTGGTGGTGGACTGAGGCTTAATGAGACAGAAGAATGTCCACTTGTTGTACAGCAAGCTTTTTCTAAGGATGTTAAAAGCCTGCCACTAACATTTATCCCAACAGAAAATATCAATGATTTCATCTTTACTGGCTTCACATCACTAGATATTGTATTTGAAAAGAAGACAAAATGTGCTGAATCCTCCAAGTGGGTGGTAGTTAAAGGTATTGGTGGTGGTGTTAATGGTAAGAGTATTATAGATGGTTTGTTTAAGATTGAGAGAAGTGGTTTTTTTGGATACAAGCTTATGTTTTGTCCCACCGTCAGTGATACACCTGGTTTATGTAATAATATTGGAAGATTTCTTGATAATGAAAATGGAGTCCGTTTGATCATGAGTAATAATTTTCAACCCTTTGAAGTTGTATTCGTTAATGTTGAAGATGTTACTCGATCCGGAAGATCTGTATTTCTTTGTTCACTCACCCTTTCCTTCTTTCTTTTTGCTTTCATCACAAATCTTTCATCAGCTTTCTCAAATGATGTTTACGTACTTGACACAAACTGGATACCCGTTCACCCATATAGTCGTTACCACGTTATCCCAACATTTTTTGGCGTCCGAAGTGGAAGATTAAAACTAGAAAAAACTGGTGTTTCAAATTGTCCAGTTACTGTCTTGGAAGAAGATTTCAACAGTGATCATGCTTTATCAGTGAAATTCAACACATTTGATAAAGAAAGCGATGAGATCTTGACGGGTAGACCTATCGAGATTGAGTTCACAAAGAAGCCTGATTGTGTTGAATCATCAAAATGGTTGATATTTATTGATAATGTTATTAATAAATTTTGTGTTGGTATTGGTGGTCCAGAAAACTATCCTGGTATGCAAATAGTGAATGGGACGTTTAATATTCAAAAATATGGTCTTAGTTATAAGTTTGTATTTTGTGTTGATGGATCTTCTAGTTTTTGTTCGAATATTGGGTTTTATAATAATGGTGAAGGAGGAGGACGTTTGATTTTGACAGACCAACAAGTTTCTGCTTTTGTATTTTCTGAGACTATTAATTCTTATGATGATGGAATAATTAAGTCTGTTGCTTGA

Protein sequence

>Msa0993450

MNPTLLTTLYFFLFALATYFPLSFTQFVEQVKDKNGNPVLVTGESGGGLRLNETEECPLVVQQAFSKDVKSLPLTFIPTENINDFIFTGFTSLDIVFEKKTKCAESSKWVVVKGIGGGVNGKSIIDGLFKIERSGFFGYKLMFCPTVSDTPGLCNNIGRFLDNENGVRLIMSNNFQPFEVVFVNVEDVTRSGRSVFLCSLTLSFFLFAFITNLSSAFSNDVYVLDTNWIPVHPYSRYHVIPTFFGVRSGRLKLEKTGVSNCPVTVLEEDFNSDHALSVKFNTFDKESDEILTGRPIEIEFTKKPDCVESSKWLIFIDNVINKFCVGIGGPENYPGMQIVNGTFNIQKYGLSYKFVFCVDGSSSFCSNIGFYNNGEGGGRLILTDQQVSAFVFSETINSYDDGIIKSVA*