AlfalfaGEDB | Msa1169180

M. sativa cultivar zhongmu-4 / Msa1169180

KEGG: K02973
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00164.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1169180	XP_003625582.1	100.000	142	0	0	1	142	1	142	5.13e-97	285

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1169180	sp\|P49201\|RS232_ARATH	96.479	142	5	0	1	142	1	142	4.03e-97	278

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1169180	B7FHD2	100.000	142	0	0	1	142	1	142	2.45e-97	285

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa1169180	0.833536	5.040115e-56	-8.615850e-47
Msa0002790	Msa1169180	0.824778	6.712227e-54	-8.615850e-47
Msa0032780	Msa1169180	0.825462	4.626703e-54	-8.615850e-47
Msa0040220	Msa1169180	0.820485	6.692342e-53	-8.615850e-47
Msa0042480	Msa1169180	0.810221	1.283703e-50	-8.615850e-47
Msa0044890	Msa1169180	0.827760	1.309188e-54	-8.615850e-47
Msa0068970	Msa1169180	0.830925	2.231114e-55	-8.615850e-47
Msa0074030	Msa1169180	0.808158	3.552942e-50	-8.615850e-47
Msa0079590	Msa1169180	0.810898	9.169379e-51	-8.615850e-47
Msa0087910	Msa1169180	0.848560	5.669168e-60	-8.615850e-47
Msa0116670	Msa1169180	0.839019	2.035362e-57	-8.615850e-47
Msa0605890	Msa1169180	0.814414	1.559575e-51	-8.615850e-47
Msa0606580	Msa1169180	0.808714	2.704481e-50	-8.615850e-47
Msa0653060	Msa1169180	0.822165	2.741390e-53	-8.615850e-47
Msa0686800	Msa1169180	0.801976	6.984342e-49	-8.615850e-47
Msa0717380	Msa1169180	0.823517	1.327176e-53	-8.615850e-47
Msa0749000	Msa1169180	0.816639	4.984313e-52	-8.615850e-47
Msa0752910	Msa1169180	0.831292	1.813224e-55	-8.615850e-47
Msa0781080	Msa1169180	0.806296	8.814801e-50	-8.615850e-47
Msa0783630	Msa1169180	0.816005	6.911821e-52	-8.615850e-47
Msa0788380	Msa1169180	0.806497	7.993347e-50	-8.615850e-47
Msa0796490	Msa1169180	0.816639	4.984313e-52	-8.615850e-47
Msa0799830	Msa1169180	0.818323	2.080947e-52	-8.615850e-47
Msa0835190	Msa1169180	0.800198	1.612442e-48	-8.615850e-47
Msa0128750	Msa1169180	0.824049	9.963303e-54	-8.615850e-47
Msa0129660	Msa1169180	0.824625	7.294839e-54	-8.615850e-47
Msa0133540	Msa1169180	0.813385	2.629143e-51	-8.615850e-47
Msa0134580	Msa1169180	0.824535	7.658324e-54	-8.615850e-47
Msa0172930	Msa1169180	0.811212	7.836296e-51	-8.615850e-47
Msa0173530	Msa1169180	0.840340	9.224135e-58	-8.615850e-47
Msa0181490	Msa1169180	0.811287	7.550750e-51	-8.615850e-47
Msa0183090	Msa1169180	0.830741	2.475272e-55	-8.615850e-47
Msa0186740	Msa1169180	0.803107	4.082663e-49	-8.615850e-47
Msa0189700	Msa1169180	0.808479	3.034678e-50	-8.615850e-47
Msa0191450	Msa1169180	0.812772	3.583797e-51	-8.615850e-47
Msa0191550	Msa1169180	0.836961	6.884844e-57	-8.615850e-47
Msa0194940	Msa1169180	0.886566	3.060145e-72	-8.615850e-47
Msa0210330	Msa1169180	0.811290	7.540290e-51	-8.615850e-47
Msa0210360	Msa1169180	0.867792	1.053641e-65	-8.615850e-47
Msa0222730	Msa1169180	0.838410	2.923199e-57	-8.615850e-47
Msa0235050	Msa1169180	0.802619	5.147788e-49	-8.615850e-47
Msa0369410	Msa1169180	0.810044	1.401959e-50	-8.615850e-47
Msa0426090	Msa1169180	0.832594	8.646344e-56	-8.615850e-47
Msa0426250	Msa1169180	0.863558	2.284983e-64	-8.615850e-47
Msa0463520	Msa1169180	0.818272	2.137727e-52	-8.615850e-47
Msa0468440	Msa1169180	0.812435	4.245116e-51	-8.615850e-47
Msa0471880	Msa1169180	0.818841	1.588025e-52	-8.615850e-47
Msa0472480	Msa1169180	0.816845	4.482981e-52	-8.615850e-47
Msa0475810	Msa1169180	0.818374	2.026989e-52	-8.615850e-47
Msa0481520	Msa1169180	0.808730	2.682778e-50	-8.615850e-47
Msa0481850	Msa1169180	0.848172	7.257761e-60	-8.615850e-47
Msa1010310	Msa1169180	0.804084	2.559859e-49	-8.615850e-47
Msa1037290	Msa1169180	0.900658	5.878018e-78	-8.615850e-47
Msa1040160	Msa1169180	0.879014	1.760109e-69	-8.615850e-47
Msa1041680	Msa1169180	0.828174	1.041215e-54	-8.615850e-47
Msa1078870	Msa1169180	0.978681	2.450146e-146	-8.615850e-47
Msa1078980	Msa1169180	0.993421	1.290101e-199	-8.615850e-47
Msa1079920	Msa1169180	0.817505	3.185471e-52	-8.615850e-47
Msa1080350	Msa1169180	0.855015	8.374601e-62	-8.615850e-47
Msa1083370	Msa1169180	0.838177	3.356628e-57	-8.615850e-47
Msa1091290	Msa1169180	0.803284	3.751393e-49	-8.615850e-47
Msa1094380	Msa1169180	0.811537	6.661377e-51	-8.615850e-47
Msa0250820	Msa1169180	0.812764	3.598153e-51	-8.615850e-47
Msa0250870	Msa1169180	0.837261	5.771195e-57	-8.615850e-47
Msa0257450	Msa1169180	0.820204	7.762072e-53	-8.615850e-47
Msa0258850	Msa1169180	0.806588	7.648823e-50	-8.615850e-47
Msa0264010	Msa1169180	0.809056	2.284543e-50	-8.615850e-47
Msa0289580	Msa1169180	0.803439	3.484196e-49	-8.615850e-47
Msa0289610	Msa1169180	0.802850	4.613694e-49	-8.615850e-47
Msa0296720	Msa1169180	0.802733	4.877896e-49	-8.615850e-47
Msa0297830	Msa1169180	0.840021	1.117145e-57	-8.615850e-47
Msa0301220	Msa1169180	0.827456	1.549263e-54	-8.615850e-47
Msa0312210	Msa1169180	0.806792	6.926375e-50	-8.615850e-47
Msa0335840	Msa1169180	0.856329	3.463723e-62	-8.615850e-47
Msa0341880	Msa1169180	0.843573	1.289583e-58	-8.615850e-47
Msa0342850	Msa1169180	0.851630	7.832748e-61	-8.615850e-47
Msa1124850	Msa1169180	0.819511	1.117716e-52	-8.615850e-47
Msa1125860	Msa1169180	0.850598	1.530918e-60	-8.615850e-47
Msa1126060	Msa1169180	0.853870	1.794947e-61	-8.615850e-47
Msa1126520	Msa1169180	0.802832	4.652543e-49	-8.615850e-47
Msa1128120	Msa1169180	0.847195	1.348267e-59	-8.615850e-47
Msa1164150	Msa1169180	0.876978	9.084268e-69	-8.615850e-47
Msa1166570	Msa1169180	0.825937	3.569953e-54	-8.615850e-47
Msa1167540	Msa1169180	0.850511	1.619463e-60	-8.615850e-47
Msa1169180	Msa1203560	0.834844	2.369963e-56	-8.615850e-47
Msa1169180	Msa1208330	0.854608	1.098845e-61	-8.615850e-47
Msa1169180	Msa1215820	0.840766	7.135748e-58	-8.615850e-47
Msa1169180	Msa1256840	0.811260	7.651187e-51	-8.615850e-47
Msa1169180	Msa1273340	0.811865	5.653687e-51	-8.615850e-47
Msa1169180	Msa1278130	0.800588	1.343461e-48	-8.615850e-47
Msa1169180	Msa1295150	0.822658	2.105203e-53	-8.615850e-47
Msa1169180	Msa1295170	0.802222	6.213832e-49	-8.615850e-47
Msa1169180	Msa1299590	0.810400	1.174578e-50	-8.615850e-47
Msa1169180	Msa1311400	0.896843	2.499155e-76	-8.615850e-47
Msa1169180	Msa1330730	0.810301	1.234104e-50	-8.615850e-47
Msa1169180	Msa1332250	0.898840	3.574143e-77	-8.615850e-47
Msa1169180	Msa1338190	0.819549	1.095750e-52	-8.615850e-47
Msa1169180	Msa1343260	0.833339	5.646238e-56	-8.615850e-47
Msa1169180	Msa1362210	0.804361	2.241473e-49	-8.615850e-47
Msa1169180	Msa1362790	0.820728	5.885064e-53	-8.615850e-47
Msa1169180	Msa1368920	0.899315	2.237713e-77	-8.615850e-47
Msa1169180	Msa1397100	0.814899	1.217970e-51	-8.615850e-47
Msa1169180	Msa1418770	0.835434	1.681597e-56	-8.615850e-47
Msa1169180	Msa1426120	0.975931	7.258136e-141	-8.615850e-47
Msa1169180	Msa1426490	0.806146	9.479327e-50	-8.615850e-47
Msa0486070	Msa1169180	0.830760	2.448920e-55	-8.615850e-47
Msa0529900	Msa1169180	0.854840	9.414051e-62	-8.615850e-47
Msa0550420	Msa1169180	0.802010	6.872844e-49	-8.615850e-47
Msa0573550	Msa1169180	0.809725	1.641742e-50	-8.615850e-47
Msa0584030	Msa1169180	0.828602	8.207541e-55	-8.615850e-47
Msa0861320	Msa1169180	0.829621	4.647276e-55	-8.615850e-47
Msa0881290	Msa1169180	0.808332	3.262472e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1169180	MtrunA17_Chr7g0263691	100.000	142	0	0	1	142	1	142	4.72e-101	285
Msa1169180	MtrunA17_Chr1g0181621	93.662	142	9	0	1	142	1	142	1.56e-94	269
Msa1169180	MtrunA17_Chr7g0239631	52.113	71	31	2	40	109	13	81	4.35e-16	68.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1169180	AT5G02960.1	96.479	142	5	0	1	142	1	142	4.09e-98	278
Msa1169180	AT3G09680.1	92.958	142	10	0	1	142	1	142	2.12e-93	266

Find 61 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCAAGGTCGTGAAGGTTTC+TGG	0.178129	7_4:-62111657	Msa1169180:CDS
GAAGTCTTGATCGCTGGATT+TGG	0.312989	7_4:-62111720	Msa1169180:CDS
TAATTCAAGCAACCATCATT+TGG	0.323107	7_4:+62111896	None:intergenic
CATGCTGTTGGTGATATTCC+TGG	0.406074	7_4:-62111687	Msa1169180:CDS
CATAAAACTCATTAAGTTTG+AGG	0.408113	7_4:+62111518	None:intergenic
TAGTTCTGCTTGGAGGAAAT+CGG	0.419730	7_4:+62112816	None:intergenic
AATTCAAGCAACCATCATTT+GGG	0.428558	7_4:+62111897	None:intergenic
CACTTACGAATGGCAGAGTT+GGG	0.434931	7_4:+62111968	None:intergenic
CTGCCATTCGTAAGTGTGCT+AGG	0.435504	7_4:-62111961	Msa1169180:CDS
TTGGTGATATTCCTGGAGTC+AGG	0.441270	7_4:-62111680	Msa1169180:CDS
AGCATGGGATGAACCAGAAA+AGG	0.446685	7_4:+62112139	None:intergenic
TTCTGGTTCATCCCATGCTA+AGG	0.454550	7_4:-62112135	Msa1169180:CDS
AATTTAAGAAATCTCATCTT+GGG	0.454713	7_4:-62112178	Msa1169180:CDS
AATCTCATCTTGGGAATGAA+TGG	0.457554	7_4:-62112169	Msa1169180:CDS
CAATTTAAGAAATCTCATCT+TGG	0.461581	7_4:-62112179	Msa1169180:CDS
CAGCCCACCTTTGCTTGATA+CGG	0.462913	7_4:+62112207	None:intergenic
TTTATTCACCGGAAAGATTG+AGG	0.463634	7_4:+62111388	None:intergenic
TAGGATGAAGTCTTGATCGC+TGG	0.469665	7_4:-62111726	Msa1169180:CDS
GCTGCCTTTGTCCCAAATGA+TGG	0.476668	7_4:-62111908	Msa1169180:CDS
AAAGATTACTAGTACTAAAA+CGG	0.482451	7_4:+62111482	None:intergenic
AACTAATTCTCGATCACCAT+GGG	0.484292	7_4:-62112798	Msa1169180:exon
TGCAGGAAGACAAGAGGAAT+GGG	0.492442	7_4:-62112254	Msa1169180:intron
CAAGAACAATTCCCTTAGCA+TGG	0.494037	7_4:+62112123	None:intergenic
CGAGAATTAGTTCTGCTTGG+AGG	0.500410	7_4:+62112809	None:intergenic
AGCCTAGGTCTTGAAGTTGT+GGG	0.508957	7_4:-62111596	Msa1169180:exon
ACACTTACGAATGGCAGAGT+TGG	0.515105	7_4:+62111967	None:intergenic
AAGCCTAGGTCTTGAAGTTG+TGG	0.517866	7_4:-62111597	Msa1169180:exon
ATCGCTGGATTTGGACGTAA+AGG	0.518707	7_4:-62111711	Msa1169180:CDS
GCATGGGATGAACCAGAAAA+GGG	0.518943	7_4:+62112140	None:intergenic
AGGAGAAGAAGGAGAAGCCT+AGG	0.519158	7_4:-62111611	Msa1169180:CDS
GATCGAGAATTAGTTCTGCT+TGG	0.520258	7_4:+62112806	None:intergenic
TTATTCACCGGAAAGATTGA+GGG	0.524238	7_4:+62111389	None:intergenic
TATTCCTGGAGTCAGGTTCA+AGG	0.524415	7_4:-62111673	Msa1169180:CDS
CTGCAGGAAGACAAGAGGAA+TGG	0.532735	7_4:-62112255	Msa1169180:intron
AAGAACAATTCCCTTAGCAT+GGG	0.533822	7_4:+62112124	None:intergenic
TCTGGTTCATCCCATGCTAA+GGG	0.536691	7_4:-62112134	Msa1169180:CDS
TGCCATTCGTAAGTGTGCTA+GGG	0.546102	7_4:-62111960	Msa1169180:CDS
AAGTGGTACAGTTTATTCAC+CGG	0.560618	7_4:+62111377	None:intergenic
GCAACCATCATTTGGGACAA+AGG	0.566362	7_4:+62111904	None:intergenic
TGGGAGCTGCTCGCAAGCTG+AGG	0.577320	7_4:-62112235	Msa1169180:CDS
ACGACCTTGAACCTGACTCC+AGG	0.578153	7_4:+62111669	None:intergenic
GGCACAACAAAAGAGAAGAT+AGG	0.579690	7_4:+62111414	None:intergenic
AGAAGAAGAGTATGCTAAAG+CGG	0.586253	7_4:+62112839	None:intergenic
GACTCCGTATCAAGCAAAGG+TGG	0.586634	7_4:-62112211	Msa1169180:CDS
TCTTCTCCTTGAAAAGAGCA+AGG	0.589001	7_4:+62111625	None:intergenic
TTTGTCTGCAGGAAGACAAG+AGG	0.606196	7_4:-62112260	Msa1169180:intron
AAGATAATTGAATAATCAAG+TGG	0.606771	7_4:+62111360	None:intergenic
GGACGTAAAGGTCATGCTGT+TGG	0.616141	7_4:-62111699	Msa1169180:CDS
TTCACCGGAAAGATTGAGGG+GGG	0.622344	7_4:+62111392	None:intergenic
GAACTAATTCTCGATCACCA+TGG	0.625355	7_4:-62112799	Msa1169180:exon
AACCCTAGCACACTTACGAA+TGG	0.626506	7_4:+62111958	None:intergenic
TAGGTCTTGAAGTTGTGGGA+TGG	0.637581	7_4:-62111592	Msa1169180:exon
TGGTTGCTTGAATTACATTG+AGG	0.642212	7_4:-62111888	Msa1169180:CDS
TATTCACCGGAAAGATTGAG+GGG	0.643789	7_4:+62111390	None:intergenic
AGTCAGGTTCAAGGTCGTGA+AGG	0.647492	7_4:-62111664	Msa1169180:CDS
ACTCCGTATCAAGCAAAGGT+GGG	0.652737	7_4:-62112210	Msa1169180:CDS
GGAGACTCCGTATCAAGCAA+AGG	0.654928	7_4:-62112214	Msa1169180:CDS
ATCCCACAACTTCAAGACCT+AGG	0.665200	7_4:+62111594	None:intergenic
TCACCGGAAAGATTGAGGGG+GGG	0.673696	7_4:+62111393	None:intergenic
ATTCACCGGAAAGATTGAGG+GGG	0.689564	7_4:+62111391	None:intergenic
ACTAATTCTCGATCACCATG+GGG	0.745036	7_4:-62112797	Msa1169180:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GAAAAAATTTAGTTAATTTT+AGG	-	chr7_4:62111861-62111880	Msa1169180:intron	10.0%
!!!	GAAAAAATTTAGTTAATTTT+AGG	-	chr7_4:62111861-62111880	Msa1169180:intron	10.0%
!!!	ATTTGTATATTTCTAGTATT+AGG	-	chr7_4:62111706-62111725	Msa1169180:CDS	15.0%
!!!	ATTTGTATATTTCTAGTATT+AGG	-	chr7_4:62111706-62111725	Msa1169180:CDS	15.0%
!!!	AATTTAGTTAATTTTAGGCA+TGG	-	chr7_4:62111866-62111885	Msa1169180:intron	20.0%
!!	AATTTAAGAAATCTCATCTT+GGG	-	chr7_4:62112032-62112051	Msa1169180:intron	20.0%
!!	AAGATATATTTAGTAGTAAG+AGG	+	chr7_4:62112135-62112154	None:intergenic	20.0%
!!	TGTAGTTTACATAGTATTAA+AGG	+	chr7_4:62112424-62112443	None:intergenic	20.0%
!!	AATGAAACTAAAGAAAAAAG+AGG	+	chr7_4:62112648-62112667	None:intergenic	20.0%
!!	AAAGATTACTAGTACTAAAA+CGG	+	chr7_4:62112731-62112750	None:intergenic	20.0%
!!	AAGATAATTGAATAATCAAG+TGG	+	chr7_4:62112853-62112872	None:intergenic	20.0%
!!!	AATTTAGTTAATTTTAGGCA+TGG	-	chr7_4:62111866-62111885	Msa1169180:intron	20.0%
!!	AATTTAAGAAATCTCATCTT+GGG	-	chr7_4:62112032-62112051	Msa1169180:intron	20.0%
!!	AAGATATATTTAGTAGTAAG+AGG	+	chr7_4:62112135-62112154	None:intergenic	20.0%
!!	TGTAGTTTACATAGTATTAA+AGG	+	chr7_4:62112424-62112443	None:intergenic	20.0%
!!	AATGAAACTAAAGAAAAAAG+AGG	+	chr7_4:62112648-62112667	None:intergenic	20.0%
!!	AAAGATTACTAGTACTAAAA+CGG	+	chr7_4:62112731-62112750	None:intergenic	20.0%
!!	AAGATAATTGAATAATCAAG+TGG	+	chr7_4:62112853-62112872	None:intergenic	20.0%
!	TTCAAATACGACAATTAGAA+TGG	+	chr7_4:62111506-62111525	None:intergenic	25.0%
!	TTTGAATTTGACTCTGAATT+TGG	-	chr7_4:62111520-62111539	Msa1169180:three_prime_UTR	25.0%
!!!	GAATTTTTTGCTACTTAGTA+TGG	-	chr7_4:62111642-62111661	Msa1169180:CDS	25.0%
!	CAATTTAAGAAATCTCATCT+TGG	-	chr7_4:62112031-62112050	Msa1169180:intron	25.0%
!	TTATTACGCATATGATGTTA+AGG	-	chr7_4:62112176-62112195	Msa1169180:CDS	25.0%
!	TATGATGTTAAGGATTTGTA+TGG	-	chr7_4:62112186-62112205	Msa1169180:CDS	25.0%
!	AGGGTTCAATTAATCAAAAA+TGG	-	chr7_4:62112269-62112288	Msa1169180:intron	25.0%
!	GGGTTCAATTAATCAAAAAT+GGG	-	chr7_4:62112270-62112289	Msa1169180:intron	25.0%
!	AATTAACATAACAGACTCAA+AGG	+	chr7_4:62112398-62112417	None:intergenic	25.0%
!	CATAAAACTCATTAAGTTTG+AGG	+	chr7_4:62112695-62112714	None:intergenic	25.0%
!!	CTCAAACTTAATGAGTTTTA+TGG	-	chr7_4:62112693-62112712	Msa1169180:intron	25.0%
!	TTCAAATACGACAATTAGAA+TGG	+	chr7_4:62111506-62111525	None:intergenic	25.0%
!	TTTGAATTTGACTCTGAATT+TGG	-	chr7_4:62111520-62111539	Msa1169180:three_prime_UTR	25.0%
!!!	GAATTTTTTGCTACTTAGTA+TGG	-	chr7_4:62111642-62111661	Msa1169180:CDS	25.0%
!	CAATTTAAGAAATCTCATCT+TGG	-	chr7_4:62112031-62112050	Msa1169180:intron	25.0%
!	TTATTACGCATATGATGTTA+AGG	-	chr7_4:62112176-62112195	Msa1169180:CDS	25.0%
!	TATGATGTTAAGGATTTGTA+TGG	-	chr7_4:62112186-62112205	Msa1169180:CDS	25.0%
!	AGGGTTCAATTAATCAAAAA+TGG	-	chr7_4:62112269-62112288	Msa1169180:intron	25.0%
!	GGGTTCAATTAATCAAAAAT+GGG	-	chr7_4:62112270-62112289	Msa1169180:intron	25.0%
!	AATTAACATAACAGACTCAA+AGG	+	chr7_4:62112398-62112417	None:intergenic	25.0%
!	CATAAAACTCATTAAGTTTG+AGG	+	chr7_4:62112695-62112714	None:intergenic	25.0%
!!	CTCAAACTTAATGAGTTTTA+TGG	-	chr7_4:62112693-62112712	Msa1169180:intron	25.0%
	GGAACACAAAAACATGAAAT+AGG	-	chr7_4:62111586-62111605	Msa1169180:exon	30.0%
!	ATTCGCTTCATTTGAAATCA+TGG	-	chr7_4:62111742-62111761	Msa1169180:intron	30.0%
!	TTTGTTTATCTTTTGTCTGC+AGG	-	chr7_4:62111939-62111958	Msa1169180:CDS	30.0%
!	TTTTATGTGTAGTGGTATTG+AGG	-	chr7_4:62112211-62112230	Msa1169180:CDS	30.0%
	AATTCAAGCAACCATCATTT+GGG	+	chr7_4:62112316-62112335	None:intergenic	30.0%
	TAATTCAAGCAACCATCATT+TGG	+	chr7_4:62112317-62112336	None:intergenic	30.0%
	ATGTATATCCTCCAGTAATA+TGG	-	chr7_4:62112444-62112463	Msa1169180:intron	30.0%
	ATCATCAACAACCATATTAC+TGG	+	chr7_4:62112458-62112477	None:intergenic	30.0%
!	AGTAATATGGTTGTTGATGA+TGG	-	chr7_4:62112457-62112476	Msa1169180:intron	30.0%
	GGAACACAAAAACATGAAAT+AGG	-	chr7_4:62111586-62111605	Msa1169180:exon	30.0%
!	ATTCGCTTCATTTGAAATCA+TGG	-	chr7_4:62111742-62111761	Msa1169180:intron	30.0%
!	TTTGTTTATCTTTTGTCTGC+AGG	-	chr7_4:62111939-62111958	Msa1169180:CDS	30.0%
!	TTTTATGTGTAGTGGTATTG+AGG	-	chr7_4:62112211-62112230	Msa1169180:CDS	30.0%
	AATTCAAGCAACCATCATTT+GGG	+	chr7_4:62112316-62112335	None:intergenic	30.0%
	TAATTCAAGCAACCATCATT+TGG	+	chr7_4:62112317-62112336	None:intergenic	30.0%
	ATGTATATCCTCCAGTAATA+TGG	-	chr7_4:62112444-62112463	Msa1169180:intron	30.0%
	ATCATCAACAACCATATTAC+TGG	+	chr7_4:62112458-62112477	None:intergenic	30.0%
!	AGTAATATGGTTGTTGATGA+TGG	-	chr7_4:62112457-62112476	Msa1169180:intron	30.0%
!	AGAAGAAGAGTATGCTAAAG+CGG	+	chr7_4:62111374-62111393	None:intergenic	35.0%
	AACTAATTCTCGATCACCAT+GGG	-	chr7_4:62111412-62111431	Msa1169180:three_prime_UTR	35.0%
!	TCTGTTTGCTTTCTGAGAAT+TGG	-	chr7_4:62111564-62111583	Msa1169180:three_prime_UTR	35.0%
!	CTGTTTGCTTTCTGAGAATT+GGG	-	chr7_4:62111565-62111584	Msa1169180:three_prime_UTR	35.0%
	AATCTCATCTTGGGAATGAA+TGG	-	chr7_4:62112041-62112060	Msa1169180:intron	35.0%
	AAGAACAATTCCCTTAGCAT+GGG	+	chr7_4:62112089-62112108	None:intergenic	35.0%
!	GTATGGTCTTTTATGTGTAG+TGG	-	chr7_4:62112203-62112222	Msa1169180:CDS	35.0%
	TGGTTGCTTGAATTACATTG+AGG	-	chr7_4:62112322-62112341	Msa1169180:intron	35.0%
	ATCAACAACCATATTACTGG+AGG	+	chr7_4:62112455-62112474	None:intergenic	35.0%
	TTATTCACCGGAAAGATTGA+GGG	+	chr7_4:62112824-62112843	None:intergenic	35.0%
	TTTATTCACCGGAAAGATTG+AGG	+	chr7_4:62112825-62112844	None:intergenic	35.0%
	AAGTGGTACAGTTTATTCAC+CGG	+	chr7_4:62112836-62112855	None:intergenic	35.0%
!	AGAAGAAGAGTATGCTAAAG+CGG	+	chr7_4:62111374-62111393	None:intergenic	35.0%
	AACTAATTCTCGATCACCAT+GGG	-	chr7_4:62111412-62111431	Msa1169180:three_prime_UTR	35.0%
!	TCTGTTTGCTTTCTGAGAAT+TGG	-	chr7_4:62111564-62111583	Msa1169180:three_prime_UTR	35.0%
!	CTGTTTGCTTTCTGAGAATT+GGG	-	chr7_4:62111565-62111584	Msa1169180:three_prime_UTR	35.0%
	AATCTCATCTTGGGAATGAA+TGG	-	chr7_4:62112041-62112060	Msa1169180:intron	35.0%
	AAGAACAATTCCCTTAGCAT+GGG	+	chr7_4:62112089-62112108	None:intergenic	35.0%
!	GTATGGTCTTTTATGTGTAG+TGG	-	chr7_4:62112203-62112222	Msa1169180:CDS	35.0%
	TGGTTGCTTGAATTACATTG+AGG	-	chr7_4:62112322-62112341	Msa1169180:intron	35.0%
	ATCAACAACCATATTACTGG+AGG	+	chr7_4:62112455-62112474	None:intergenic	35.0%
	TTATTCACCGGAAAGATTGA+GGG	+	chr7_4:62112824-62112843	None:intergenic	35.0%
	TTTATTCACCGGAAAGATTG+AGG	+	chr7_4:62112825-62112844	None:intergenic	35.0%
	AAGTGGTACAGTTTATTCAC+CGG	+	chr7_4:62112836-62112855	None:intergenic	35.0%
!	TAGTTCTGCTTGGAGGAAAT+CGG	+	chr7_4:62111397-62111416	None:intergenic	40.0%
!!	GATCGAGAATTAGTTCTGCT+TGG	+	chr7_4:62111407-62111426	None:intergenic	40.0%
	GAACTAATTCTCGATCACCA+TGG	-	chr7_4:62111411-62111430	Msa1169180:three_prime_UTR	40.0%
	ACTAATTCTCGATCACCATG+GGG	-	chr7_4:62111413-62111432	Msa1169180:three_prime_UTR	40.0%
	TGTGAAGTTGTATTACCCCA+TGG	+	chr7_4:62111431-62111450	None:intergenic	40.0%
!	GAATGGAAGAAACCCTTTTC+TGG	-	chr7_4:62112058-62112077	Msa1169180:intron	40.0%
	CAAGAACAATTCCCTTAGCA+TGG	+	chr7_4:62112090-62112109	None:intergenic	40.0%
!!	GGTTGTTGATGATGGTTTGT+AGG	-	chr7_4:62112465-62112484	Msa1169180:intron	40.0%
	TCTTCTCCTTGAAAAGAGCA+AGG	+	chr7_4:62112588-62112607	None:intergenic	40.0%
!!	TGCTCTTTTCAAGGAGAAGA+AGG	-	chr7_4:62112588-62112607	Msa1169180:intron	40.0%
	GGCACAACAAAAGAGAAGAT+AGG	+	chr7_4:62112799-62112818	None:intergenic	40.0%
	TATTCACCGGAAAGATTGAG+GGG	+	chr7_4:62112823-62112842	None:intergenic	40.0%
	CAATTATCTTGCAAGAGCAG+AGG	-	chr7_4:62112863-62112882	Msa1169180:five_prime_UTR	40.0%
!	TAGTTCTGCTTGGAGGAAAT+CGG	+	chr7_4:62111397-62111416	None:intergenic	40.0%
!!	GATCGAGAATTAGTTCTGCT+TGG	+	chr7_4:62111407-62111426	None:intergenic	40.0%
	GAACTAATTCTCGATCACCA+TGG	-	chr7_4:62111411-62111430	Msa1169180:three_prime_UTR	40.0%
	ACTAATTCTCGATCACCATG+GGG	-	chr7_4:62111413-62111432	Msa1169180:three_prime_UTR	40.0%
	TGTGAAGTTGTATTACCCCA+TGG	+	chr7_4:62111431-62111450	None:intergenic	40.0%
!	GAATGGAAGAAACCCTTTTC+TGG	-	chr7_4:62112058-62112077	Msa1169180:intron	40.0%
	CAAGAACAATTCCCTTAGCA+TGG	+	chr7_4:62112090-62112109	None:intergenic	40.0%
!!	GGTTGTTGATGATGGTTTGT+AGG	-	chr7_4:62112465-62112484	Msa1169180:intron	40.0%
	TCTTCTCCTTGAAAAGAGCA+AGG	+	chr7_4:62112588-62112607	None:intergenic	40.0%
!!	TGCTCTTTTCAAGGAGAAGA+AGG	-	chr7_4:62112588-62112607	Msa1169180:intron	40.0%
	GGCACAACAAAAGAGAAGAT+AGG	+	chr7_4:62112799-62112818	None:intergenic	40.0%
	TATTCACCGGAAAGATTGAG+GGG	+	chr7_4:62112823-62112842	None:intergenic	40.0%
!!	CGAGAATTAGTTCTGCTTGG+AGG	+	chr7_4:62111404-62111423	None:intergenic	45.0%
	TTTGTCTGCAGGAAGACAAG+AGG	-	chr7_4:62111950-62111969	Msa1169180:CDS	45.0%
	TGCAGGAAGACAAGAGGAAT+GGG	-	chr7_4:62111956-62111975	Msa1169180:CDS	45.0%
	ACTCCGTATCAAGCAAAGGT+GGG	-	chr7_4:62112000-62112019	Msa1169180:intron	45.0%
	GCATGGGATGAACCAGAAAA+GGG	+	chr7_4:62112073-62112092	None:intergenic	45.0%
	AGCATGGGATGAACCAGAAA+AGG	+	chr7_4:62112074-62112093	None:intergenic	45.0%
!!	TTCTGGTTCATCCCATGCTA+AGG	-	chr7_4:62112075-62112094	Msa1169180:intron	45.0%
!	TCTGGTTCATCCCATGCTAA+GGG	-	chr7_4:62112076-62112095	Msa1169180:intron	45.0%
	CACTTACGAATGGCAGAGTT+GGG	+	chr7_4:62112245-62112264	None:intergenic	45.0%
	ACACTTACGAATGGCAGAGT+TGG	+	chr7_4:62112246-62112265	None:intergenic	45.0%
	TGCCATTCGTAAGTGTGCTA+GGG	-	chr7_4:62112250-62112269	Msa1169180:CDS	45.0%
	AACCCTAGCACACTTACGAA+TGG	+	chr7_4:62112255-62112274	None:intergenic	45.0%
!	GCAACCATCATTTGGGACAA+AGG	+	chr7_4:62112309-62112328	None:intergenic	45.0%
	TAGGATGAAGTCTTGATCGC+TGG	-	chr7_4:62112484-62112503	Msa1169180:intron	45.0%
	GAAGTCTTGATCGCTGGATT+TGG	-	chr7_4:62112490-62112509	Msa1169180:intron	45.0%
	ATCGCTGGATTTGGACGTAA+AGG	-	chr7_4:62112499-62112518	Msa1169180:intron	45.0%
!!	CATGCTGTTGGTGATATTCC+TGG	-	chr7_4:62112523-62112542	Msa1169180:intron	45.0%
!	TTGGTGATATTCCTGGAGTC+AGG	-	chr7_4:62112530-62112549	Msa1169180:intron	45.0%
	TATTCCTGGAGTCAGGTTCA+AGG	-	chr7_4:62112537-62112556	Msa1169180:intron	45.0%
	TTCAAGGTCGTGAAGGTTTC+TGG	-	chr7_4:62112553-62112572	Msa1169180:intron	45.0%
!	CTCTCTCCTTGCTCTTTTCA+AGG	-	chr7_4:62112579-62112598	Msa1169180:intron	45.0%
	AAGCCTAGGTCTTGAAGTTG+TGG	-	chr7_4:62112613-62112632	Msa1169180:intron	45.0%
	AGCCTAGGTCTTGAAGTTGT+GGG	-	chr7_4:62112614-62112633	Msa1169180:intron	45.0%
	ATCCCACAACTTCAAGACCT+AGG	+	chr7_4:62112619-62112638	None:intergenic	45.0%
	TAGGTCTTGAAGTTGTGGGA+TGG	-	chr7_4:62112618-62112637	Msa1169180:intron	45.0%
	ATTCACCGGAAAGATTGAGG+GGG	+	chr7_4:62112822-62112841	None:intergenic	45.0%
!!	CGAGAATTAGTTCTGCTTGG+AGG	+	chr7_4:62111404-62111423	None:intergenic	45.0%
	TTTGTCTGCAGGAAGACAAG+AGG	-	chr7_4:62111950-62111969	Msa1169180:CDS	45.0%
	TGCAGGAAGACAAGAGGAAT+GGG	-	chr7_4:62111956-62111975	Msa1169180:CDS	45.0%
	ACTCCGTATCAAGCAAAGGT+GGG	-	chr7_4:62112000-62112019	Msa1169180:intron	45.0%
	GCATGGGATGAACCAGAAAA+GGG	+	chr7_4:62112073-62112092	None:intergenic	45.0%
	AGCATGGGATGAACCAGAAA+AGG	+	chr7_4:62112074-62112093	None:intergenic	45.0%
!!	TTCTGGTTCATCCCATGCTA+AGG	-	chr7_4:62112075-62112094	Msa1169180:intron	45.0%
!	TCTGGTTCATCCCATGCTAA+GGG	-	chr7_4:62112076-62112095	Msa1169180:intron	45.0%
	CACTTACGAATGGCAGAGTT+GGG	+	chr7_4:62112245-62112264	None:intergenic	45.0%
	ACACTTACGAATGGCAGAGT+TGG	+	chr7_4:62112246-62112265	None:intergenic	45.0%
	TGCCATTCGTAAGTGTGCTA+GGG	-	chr7_4:62112250-62112269	Msa1169180:CDS	45.0%
	AACCCTAGCACACTTACGAA+TGG	+	chr7_4:62112255-62112274	None:intergenic	45.0%
!	GCAACCATCATTTGGGACAA+AGG	+	chr7_4:62112309-62112328	None:intergenic	45.0%
	TAGGATGAAGTCTTGATCGC+TGG	-	chr7_4:62112484-62112503	Msa1169180:intron	45.0%
	GAAGTCTTGATCGCTGGATT+TGG	-	chr7_4:62112490-62112509	Msa1169180:intron	45.0%
	ATCGCTGGATTTGGACGTAA+AGG	-	chr7_4:62112499-62112518	Msa1169180:intron	45.0%
!!	CATGCTGTTGGTGATATTCC+TGG	-	chr7_4:62112523-62112542	Msa1169180:intron	45.0%
!	TTGGTGATATTCCTGGAGTC+AGG	-	chr7_4:62112530-62112549	Msa1169180:intron	45.0%
	TATTCCTGGAGTCAGGTTCA+AGG	-	chr7_4:62112537-62112556	Msa1169180:intron	45.0%
	TTCAAGGTCGTGAAGGTTTC+TGG	-	chr7_4:62112553-62112572	Msa1169180:intron	45.0%
!	CTCTCTCCTTGCTCTTTTCA+AGG	-	chr7_4:62112579-62112598	Msa1169180:intron	45.0%
	AAGCCTAGGTCTTGAAGTTG+TGG	-	chr7_4:62112613-62112632	Msa1169180:intron	45.0%
	AGCCTAGGTCTTGAAGTTGT+GGG	-	chr7_4:62112614-62112633	Msa1169180:intron	45.0%
	ATCCCACAACTTCAAGACCT+AGG	+	chr7_4:62112619-62112638	None:intergenic	45.0%
	TAGGTCTTGAAGTTGTGGGA+TGG	-	chr7_4:62112618-62112637	Msa1169180:intron	45.0%
	ATTCACCGGAAAGATTGAGG+GGG	+	chr7_4:62112822-62112841	None:intergenic	45.0%
	CTGCAGGAAGACAAGAGGAA+TGG	-	chr7_4:62111955-62111974	Msa1169180:CDS	50.0%
	GGAGACTCCGTATCAAGCAA+AGG	-	chr7_4:62111996-62112015	Msa1169180:intron	50.0%
	GACTCCGTATCAAGCAAAGG+TGG	-	chr7_4:62111999-62112018	Msa1169180:intron	50.0%
	CAGCCCACCTTTGCTTGATA+CGG	+	chr7_4:62112006-62112025	None:intergenic	50.0%
	CTGCCATTCGTAAGTGTGCT+AGG	-	chr7_4:62112249-62112268	Msa1169180:CDS	50.0%
	GCTGCCTTTGTCCCAAATGA+TGG	-	chr7_4:62112302-62112321	Msa1169180:intron	50.0%
	GGACGTAAAGGTCATGCTGT+TGG	-	chr7_4:62112511-62112530	Msa1169180:intron	50.0%
	AGTCAGGTTCAAGGTCGTGA+AGG	-	chr7_4:62112546-62112565	Msa1169180:intron	50.0%
	AGGAGAAGAAGGAGAAGCCT+AGG	-	chr7_4:62112599-62112618	Msa1169180:intron	50.0%
	TTCACCGGAAAGATTGAGGG+GGG	+	chr7_4:62112821-62112840	None:intergenic	50.0%
	CTGCAGGAAGACAAGAGGAA+TGG	-	chr7_4:62111955-62111974	Msa1169180:CDS	50.0%
	GGAGACTCCGTATCAAGCAA+AGG	-	chr7_4:62111996-62112015	Msa1169180:intron	50.0%
	GACTCCGTATCAAGCAAAGG+TGG	-	chr7_4:62111999-62112018	Msa1169180:intron	50.0%
	CAGCCCACCTTTGCTTGATA+CGG	+	chr7_4:62112006-62112025	None:intergenic	50.0%
	CTGCCATTCGTAAGTGTGCT+AGG	-	chr7_4:62112249-62112268	Msa1169180:CDS	50.0%
	GCTGCCTTTGTCCCAAATGA+TGG	-	chr7_4:62112302-62112321	Msa1169180:intron	50.0%
	GGACGTAAAGGTCATGCTGT+TGG	-	chr7_4:62112511-62112530	Msa1169180:intron	50.0%
	AGTCAGGTTCAAGGTCGTGA+AGG	-	chr7_4:62112546-62112565	Msa1169180:intron	50.0%
	AGGAGAAGAAGGAGAAGCCT+AGG	-	chr7_4:62112599-62112618	Msa1169180:intron	50.0%
	TTCACCGGAAAGATTGAGGG+GGG	+	chr7_4:62112821-62112840	None:intergenic	50.0%
	ACGACCTTGAACCTGACTCC+AGG	+	chr7_4:62112544-62112563	None:intergenic	55.0%
	TCACCGGAAAGATTGAGGGG+GGG	+	chr7_4:62112820-62112839	None:intergenic	55.0%
	ACGACCTTGAACCTGACTCC+AGG	+	chr7_4:62112544-62112563	None:intergenic	55.0%
	TCACCGGAAAGATTGAGGGG+GGG	+	chr7_4:62112820-62112839	None:intergenic	55.0%
	GTGCCCCCCCTCAATCTTTC+CGG	-	chr7_4:62112814-62112833	Msa1169180:five_prime_UTR	60.0%
	GTGCCCCCCCTCAATCTTTC+CGG	-	chr7_4:62112814-62112833	Msa1169180:five_prime_UTR	60.0%
	TGGGAGCTGCTCGCAAGCTG+AGG	-	chr7_4:62111975-62111994	Msa1169180:CDS	65.0%
	TGGGAGCTGCTCGCAAGCTG+AGG	-	chr7_4:62111975-62111994	Msa1169180:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	62111350	62112882	62111350	ID=Msa1169180;Name=Msa1169180
chr7_4	mRNA	62111350	62112882	62111350	ID=Msa1169180-mRNA-1;Parent=Msa1169180;Name=Msa1169180-mRNA-1;_AED=0.02;_eAED=0.02;_QI=80\|1\|1\|1\|1\|1\|4\|255\|142
chr7_4	exon	62111350	62111745	62111350	ID=Msa1169180-mRNA-1:exon:19654;Parent=Msa1169180-mRNA-1
chr7_4	exon	62111883	62112009	62111883	ID=Msa1169180-mRNA-1:exon:19653;Parent=Msa1169180-mRNA-1
chr7_4	exon	62112116	62112271	62112116	ID=Msa1169180-mRNA-1:exon:19652;Parent=Msa1169180-mRNA-1
chr7_4	exon	62112798	62112882	62112798	ID=Msa1169180-mRNA-1:exon:19651;Parent=Msa1169180-mRNA-1
chr7_4	five_prime_UTR	62112803	62112882	62112803	ID=Msa1169180-mRNA-1:five_prime_utr;Parent=Msa1169180-mRNA-1
chr7_4	CDS	62112798	62112802	62112798	ID=Msa1169180-mRNA-1:cds;Parent=Msa1169180-mRNA-1
chr7_4	CDS	62112116	62112271	62112116	ID=Msa1169180-mRNA-1:cds;Parent=Msa1169180-mRNA-1
chr7_4	CDS	62111883	62112009	62111883	ID=Msa1169180-mRNA-1:cds;Parent=Msa1169180-mRNA-1
chr7_4	CDS	62111605	62111745	62111605	ID=Msa1169180-mRNA-1:cds;Parent=Msa1169180-mRNA-1
chr7_4	three_prime_UTR	62111350	62111604	62111350	ID=Msa1169180-mRNA-1:three_prime_utr;Parent=Msa1169180-mRNA-1

Gene Sequence

>Msa1169180

ATGGGGAAGACAAGAGGAATGGGAGCTGCTCGCAAGCTGAGGAGACTCCGTATCAAGCAAAGGTGGGCTGATAAGCAATTTAAGAAATCTCATCTTGGGAATGAATGGAAGAAACCCTTTTCTGGTTCATCCCATGCTAAGGGAATTGTTCTTGAAAAGATTGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCTAGGGTTCAATTAATCAAAAATGGGAAGAAGATTGCTGCCTTTGTCCCAAATGATGGTTGCTTGAATTACATTGAGGAGAATGATGAAGTCTTGATCGCTGGATTTGGACGTAAAGGTCATGCTGTTGGTGATATTCCTGGAGTCAGGTTCAAGGTCGTGAAGGTTTCTGGTGTCTCTCTCCTTGCTCTTTTCAAGGAGAAGAAGGAGAAGCCTAGGTCTTGA

Protein sequence

>Msa1169180

MGKTRGMGAARKLRRLRIKQRWADKQFKKSHLGNEWKKPFSGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*