Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558390 | XP_003608194.2 | 89.890 | 544 | 10 | 1 | 1 | 499 | 1 | 544 | 0.0 | 994 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558390 | sp|Q8GWA1|NDA1_ARATH | 62.112 | 483 | 136 | 2 | 61 | 498 | 30 | 510 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558390 | G7JQS9 | 89.890 | 544 | 10 | 1 | 1 | 499 | 1 | 544 | 0.0 | 994 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0558390 | 0.817921 | 2.566448e-52 | -8.615850e-47 |
| Msa0011050 | Msa0558390 | 0.832207 | 1.078247e-55 | -8.615850e-47 |
| Msa0048390 | Msa0558390 | 0.808424 | 3.118283e-50 | -8.615850e-47 |
| Msa0059900 | Msa0558390 | 0.823635 | 1.245867e-53 | -8.615850e-47 |
| Msa0060070 | Msa0558390 | 0.806648 | 7.427021e-50 | -8.615850e-47 |
| Msa0061220 | Msa0558390 | 0.804891 | 1.737795e-49 | -8.615850e-47 |
| Msa0064140 | Msa0558390 | 0.807607 | 4.653809e-50 | -8.615850e-47 |
| Msa0090090 | Msa0558390 | 0.807158 | 5.794008e-50 | -8.615850e-47 |
| Msa0090380 | Msa0558390 | 0.810137 | 1.338677e-50 | -8.615850e-47 |
| Msa0094710 | Msa0558390 | 0.803990 | 2.677545e-49 | -8.615850e-47 |
| Msa0104810 | Msa0558390 | 0.821291 | 4.365223e-53 | -8.615850e-47 |
| Msa0137560 | Msa0558390 | 0.802475 | 5.512486e-49 | -8.615850e-47 |
| Msa0137860 | Msa0558390 | 0.812597 | 3.914174e-51 | -8.615850e-47 |
| Msa0151220 | Msa0558390 | 0.826885 | 2.122207e-54 | -8.615850e-47 |
| Msa0155210 | Msa0558390 | 0.802253 | 6.125265e-49 | -8.615850e-47 |
| Msa0176260 | Msa0558390 | 0.804689 | 1.914938e-49 | -8.615850e-47 |
| Msa0224130 | Msa0558390 | 0.831276 | 1.829762e-55 | -8.615850e-47 |
| Msa0364790 | Msa0558390 | 0.805771 | 1.136253e-49 | -8.615850e-47 |
| Msa0374890 | Msa0558390 | 0.801550 | 8.541339e-49 | -8.615850e-47 |
| Msa0377840 | Msa0558390 | 0.817230 | 3.672791e-52 | -8.615850e-47 |
| Msa0380600 | Msa0558390 | 0.802667 | 5.032953e-49 | -8.615850e-47 |
| Msa0386010 | Msa0558390 | 0.803445 | 3.474326e-49 | -8.615850e-47 |
| Msa0389900 | Msa0558390 | 0.815725 | 7.981022e-52 | -8.615850e-47 |
| Msa0408340 | Msa0558390 | 0.812792 | 3.547124e-51 | -8.615850e-47 |
| Msa0426560 | Msa0558390 | 0.818623 | 1.780135e-52 | -8.615850e-47 |
| Msa0430240 | Msa0558390 | 0.802925 | 4.451603e-49 | -8.615850e-47 |
| Msa0473140 | Msa0558390 | 0.809925 | 1.486736e-50 | -8.615850e-47 |
| Msa0259440 | Msa0558390 | 0.819070 | 1.408799e-52 | -8.615850e-47 |
| Msa0259580 | Msa0558390 | 0.801332 | 9.465365e-49 | -8.615850e-47 |
| Msa0260520 | Msa0558390 | 0.805285 | 1.437384e-49 | -8.615850e-47 |
| Msa0264680 | Msa0558390 | 0.840848 | 6.791738e-58 | -8.615850e-47 |
| Msa0265270 | Msa0558390 | 0.830994 | 2.146453e-55 | -8.615850e-47 |
| Msa0267790 | Msa0558390 | 0.800607 | 1.331177e-48 | -8.615850e-47 |
| Msa0271540 | Msa0558390 | 0.803428 | 3.502818e-49 | -8.615850e-47 |
| Msa0302730 | Msa0558390 | 0.845153 | 4.850253e-59 | -8.615850e-47 |
| Msa0484800 | Msa0558390 | 0.824272 | 8.832885e-54 | -8.615850e-47 |
| Msa0517610 | Msa0558390 | 0.806709 | 7.209208e-50 | -8.615850e-47 |
| Msa0524330 | Msa0558390 | 0.831373 | 1.731518e-55 | -8.615850e-47 |
| Msa0524440 | Msa0558390 | 0.833607 | 4.839392e-56 | -8.615850e-47 |
| Msa0545050 | Msa0558390 | 0.823107 | 1.655120e-53 | -8.615850e-47 |
| Msa0558390 | Msa0567520 | 0.801558 | 8.508866e-49 | -8.615850e-47 |
| Msa0558390 | Msa0584580 | 0.800579 | 1.348661e-48 | -8.615850e-47 |
| Msa0558390 | Msa0584600 | 0.822811 | 1.939404e-53 | -8.615850e-47 |
| Msa0558390 | Msa0588710 | 0.829472 | 5.051527e-55 | -8.615850e-47 |
| Msa0558390 | Msa0592650 | 0.800824 | 1.202440e-48 | -8.615850e-47 |
| Msa0558390 | Msa0600590 | 0.833977 | 3.910493e-56 | -8.615850e-47 |
| Msa0558390 | Msa0613150 | 0.935772 | 5.009721e-97 | -8.615850e-47 |
| Msa0558390 | Msa0614380 | 0.816681 | 4.879340e-52 | -8.615850e-47 |
| Msa0558390 | Msa0632650 | 0.803973 | 2.699838e-49 | -8.615850e-47 |
| Msa0558390 | Msa0635270 | 0.826363 | 2.827329e-54 | -8.615850e-47 |
| Msa0558390 | Msa0641130 | 0.831401 | 1.705082e-55 | -8.615850e-47 |
| Msa0558390 | Msa0662580 | 0.801759 | 7.738796e-49 | -8.615850e-47 |
| Msa0558390 | Msa0679670 | 0.806641 | 7.453928e-50 | -8.615850e-47 |
| Msa0558390 | Msa0685240 | 0.809431 | 1.898281e-50 | -8.615850e-47 |
| Msa0558390 | Msa0696100 | 0.959907 | 5.813681e-118 | -8.615850e-47 |
| Msa0558390 | Msa0697590 | 0.823708 | 1.197506e-53 | -8.615850e-47 |
| Msa0558390 | Msa0708310 | 0.804141 | 2.490604e-49 | -8.615850e-47 |
| Msa0558390 | Msa0743870 | 0.814247 | 1.697519e-51 | -8.615850e-47 |
| Msa0558390 | Msa0775160 | 0.803004 | 4.286268e-49 | -8.615850e-47 |
| Msa0558390 | Msa0787790 | 0.846232 | 2.471505e-59 | -8.615850e-47 |
| Msa0558390 | Msa0807670 | 0.800743 | 1.249097e-48 | -8.615850e-47 |
| Msa0558390 | Msa0812530 | 0.805226 | 1.478986e-49 | -8.615850e-47 |
| Msa0558390 | Msa0838090 | 0.800774 | 1.230666e-48 | -8.615850e-47 |
| Msa0558390 | Msa0852790 | 0.815535 | 8.794570e-52 | -8.615850e-47 |
| Msa0558390 | Msa0863720 | 0.821072 | 4.903407e-53 | -8.615850e-47 |
| Msa0558390 | Msa0863990 | 0.831690 | 1.447161e-55 | -8.615850e-47 |
| Msa0558390 | Msa0929290 | 0.912283 | 2.325314e-83 | -8.615850e-47 |
| Msa0558390 | Msa0945130 | 0.810505 | 1.115025e-50 | -8.615850e-47 |
| Msa0558390 | Msa0968050 | 0.832251 | 1.051910e-55 | -8.615850e-47 |
| Msa0558390 | Msa1011250 | 0.804964 | 1.677167e-49 | -8.615850e-47 |
| Msa0558390 | Msa1031460 | 0.815345 | 9.696006e-52 | -8.615850e-47 |
| Msa0558390 | Msa1043120 | 0.818628 | 1.774651e-52 | -8.615850e-47 |
| Msa0558390 | Msa1059670 | 0.805224 | 1.480268e-49 | -8.615850e-47 |
| Msa0558390 | Msa1069890 | 0.814726 | 1.330087e-51 | -8.615850e-47 |
| Msa0558390 | Msa1070540 | 0.821809 | 3.314567e-53 | -8.615850e-47 |
| Msa0558390 | Msa1089190 | 0.835705 | 1.436075e-56 | -8.615850e-47 |
| Msa0558390 | Msa1101240 | 0.822299 | 2.552203e-53 | -8.615850e-47 |
| Msa0558390 | Msa1131790 | 0.821129 | 4.756333e-53 | -8.615850e-47 |
| Msa0558390 | Msa1159170 | 0.817129 | 3.870193e-52 | -8.615850e-47 |
| Msa0558390 | Msa1208990 | 0.807027 | 6.175866e-50 | -8.615850e-47 |
| Msa0558390 | Msa1214170 | 0.837783 | 4.239053e-57 | -8.615850e-47 |
| Msa0558390 | Msa1225580 | 0.843891 | 1.060397e-58 | -8.615850e-47 |
| Msa0558390 | Msa1246780 | 0.820212 | 7.727217e-53 | -8.615850e-47 |
| Msa0558390 | Msa1246790 | 0.827108 | 1.877268e-54 | -8.615850e-47 |
| Msa0558390 | Msa1256060 | 0.808126 | 3.609045e-50 | -8.615850e-47 |
| Msa0558390 | Msa1259860 | 0.810711 | 1.006258e-50 | -8.615850e-47 |
| Msa0558390 | Msa1260680 | 0.811253 | 7.679653e-51 | -8.615850e-47 |
| Msa0558390 | Msa1286210 | 0.814439 | 1.539673e-51 | -8.615850e-47 |
| Msa0558390 | Msa1286220 | 0.807261 | 5.510859e-50 | -8.615850e-47 |
| Msa0558390 | Msa1296240 | 0.807868 | 4.096633e-50 | -8.615850e-47 |
| Msa0558390 | Msa1353890 | 0.809085 | 2.252704e-50 | -8.615850e-47 |
| Msa0558390 | Msa1355510 | 0.843666 | 1.218122e-58 | -8.615850e-47 |
| Msa0558390 | Msa1360020 | 0.831390 | 1.715453e-55 | -8.615850e-47 |
| Msa0558390 | Msa1364080 | 0.833944 | 3.986948e-56 | -8.615850e-47 |
| Msa0558390 | Msa1367530 | 0.827323 | 1.666531e-54 | -8.615850e-47 |
| Msa0558390 | Msa1390290 | 0.811882 | 5.604106e-51 | -8.615850e-47 |
| Msa0558390 | Msa1397390 | 0.813802 | 2.128884e-51 | -8.615850e-47 |
| Msa0558390 | Msa1407880 | 0.819805 | 9.577032e-53 | -8.615850e-47 |
| Msa0558390 | Msa1420940 | 0.809846 | 1.546575e-50 | -8.615850e-47 |
| Msa0558390 | Msa1424580 | 0.819212 | 1.307789e-52 | -8.615850e-47 |
| Msa0558390 | Msa1433410 | 0.816698 | 4.836669e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558390 | MtrunA17_Chr4g0048041 | 89.890 | 544 | 10 | 1 | 1 | 499 | 1 | 544 | 0.0 | 994 |
| Msa0558390 | MtrunA17_Chr5g0430321 | 66.814 | 452 | 105 | 1 | 92 | 498 | 50 | 501 | 0.0 | 639 |
| Msa0558390 | MtrunA17_Chr3g0105191 | 60.887 | 496 | 143 | 4 | 54 | 498 | 9 | 504 | 0.0 | 605 |
| Msa0558390 | MtrunA17_Chr4g0048381 | 33.611 | 360 | 173 | 12 | 105 | 404 | 51 | 404 | 3.22e-46 | 169 |
| Msa0558390 | MtrunA17_Chr4g0048381 | 34.167 | 120 | 70 | 3 | 383 | 498 | 464 | 578 | 2.58e-12 | 69.3 |
| Msa0558390 | MtrunA17_Chr2g0281111 | 33.526 | 346 | 169 | 11 | 105 | 395 | 51 | 390 | 2.88e-45 | 167 |
| Msa0558390 | MtrunA17_Chr2g0281111 | 36.667 | 120 | 67 | 3 | 383 | 498 | 464 | 578 | 2.18e-14 | 75.9 |
| Msa0558390 | MtrunA17_Chr4g0022591 | 30.469 | 384 | 193 | 12 | 81 | 404 | 37 | 406 | 1.79e-42 | 159 |
| Msa0558390 | MtrunA17_Chr4g0022591 | 36.667 | 120 | 67 | 3 | 383 | 498 | 463 | 577 | 2.20e-15 | 79.0 |
| Msa0558390 | MtrunA17_Chr4g0022601 | 30.245 | 367 | 173 | 13 | 105 | 410 | 44 | 388 | 1.81e-41 | 156 |
| Msa0558390 | MtrunA17_Chr4g0022601 | 35.000 | 120 | 69 | 3 | 383 | 498 | 455 | 569 | 7.26e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558390 | AT1G07180.1 | 62.112 | 483 | 136 | 2 | 61 | 498 | 30 | 510 | 0.0 | 610 |
| Msa0558390 | AT2G29990.1 | 64.459 | 453 | 116 | 1 | 91 | 498 | 56 | 508 | 0.0 | 608 |
| Msa0558390 | AT4G21490.1 | 30.824 | 425 | 202 | 14 | 46 | 410 | 3 | 395 | 9.89e-48 | 174 |
| Msa0558390 | AT4G21490.1 | 33.058 | 121 | 72 | 4 | 382 | 498 | 465 | 580 | 1.14e-11 | 67.8 |
| Msa0558390 | AT4G21490.2 | 30.824 | 425 | 201 | 14 | 46 | 410 | 3 | 394 | 1.86e-47 | 173 |
| Msa0558390 | AT4G21490.2 | 33.058 | 121 | 72 | 4 | 382 | 498 | 464 | 579 | 1.16e-11 | 67.4 |
| Msa0558390 | AT4G05020.1 | 33.645 | 321 | 156 | 8 | 105 | 372 | 57 | 373 | 2.60e-45 | 167 |
| Msa0558390 | AT4G05020.1 | 32.500 | 120 | 72 | 3 | 383 | 498 | 468 | 582 | 3.25e-11 | 66.2 |
| Msa0558390 | AT4G05020.2 | 33.645 | 321 | 156 | 8 | 105 | 372 | 57 | 373 | 4.90e-45 | 167 |
| Msa0558390 | AT2G20800.1 | 30.295 | 373 | 177 | 10 | 103 | 416 | 60 | 408 | 4.94e-39 | 150 |
| Msa0558390 | AT2G20800.1 | 37.500 | 120 | 66 | 3 | 383 | 498 | 468 | 582 | 1.29e-14 | 77.0 |
| Msa0558390 | AT4G28220.2 | 32.344 | 337 | 164 | 12 | 109 | 389 | 52 | 380 | 1.11e-38 | 147 |
| Msa0558390 | AT4G28220.1 | 32.344 | 337 | 164 | 12 | 109 | 389 | 52 | 380 | 2.08e-38 | 148 |
| Msa0558390 | AT4G28220.1 | 36.667 | 120 | 67 | 3 | 383 | 498 | 457 | 571 | 3.15e-13 | 72.4 |
Find 124 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGAGTTGTTCAACAAAAT+TGG | 0.171502 | 4_1:-57097072 | Msa0558390:CDS |
| GTTGTTCTGTTCCTTAATTC+TGG | 0.179951 | 4_1:+57099089 | None:intergenic |
| TCTATAACTCTTTGTGTGTT+AGG | 0.192700 | 4_1:+57099018 | None:intergenic |
| GCTGCTTGTCGGTTTCTTAA+AGG | 0.225722 | 4_1:-57098892 | Msa0558390:CDS |
| CAGCAGGATAGGTTGAATTT+TGG | 0.230901 | 4_1:-57096643 | Msa0558390:exon |
| CATCACTCAAAACTATCTTT+TGG | 0.254195 | 4_1:+57097716 | None:intergenic |
| TAGATCAACAAGTGCCTTAT+AGG | 0.262816 | 4_1:+57096954 | None:intergenic |
| AGAAGATCAGGTGTTGCTTT+TGG | 0.283784 | 4_1:-57099207 | Msa0558390:CDS |
| CCCTTGATACCAAAAGTTAA+AGG | 0.285822 | 4_1:+57098415 | None:intergenic |
| TTTCAGAAAGCATCAGATTA+AGG | 0.287447 | 4_1:+57098326 | None:intergenic |
| GTGTTGGTACCCTTGAATTC+AGG | 0.309821 | 4_1:-57098789 | Msa0558390:CDS |
| GGAGCTGAGCCTTTAACTTT+TGG | 0.313907 | 4_1:-57098424 | Msa0558390:CDS |
| TTCCTTATGGTCTCTTGGTT+TGG | 0.321151 | 4_1:-57097684 | Msa0558390:CDS |
| GGTCTCTTGGTTTGGTCCAC+AGG | 0.327590 | 4_1:-57097676 | Msa0558390:CDS |
| TTCGTATATTTCCAGAATTA+AGG | 0.335626 | 4_1:-57099100 | Msa0558390:CDS |
| CTGCTTGTCGGTTTCTTAAA+GGG | 0.336052 | 4_1:-57098891 | Msa0558390:CDS |
| TGTATCATGCTCAAGAAATA+AGG | 0.343406 | 4_1:-57098360 | Msa0558390:CDS |
| GCAAAGGGATTGTCACTTGC+TGG | 0.349729 | 4_1:-57096780 | Msa0558390:CDS |
| TAGAGTTGTTCAACAAAATT+GGG | 0.356038 | 4_1:-57097071 | Msa0558390:CDS |
| ACAATTTGTGTATAAACATA+TGG | 0.358161 | 4_1:-57096998 | Msa0558390:CDS |
| CTATAACTCTTTGTGTGTTA+GGG | 0.367616 | 4_1:+57099019 | None:intergenic |
| TGTCATATGCAACTTTGAAT+TGG | 0.368204 | 4_1:+57098464 | None:intergenic |
| GGCATCAGTAGGTGCCTATA+AGG | 0.371076 | 4_1:-57096968 | Msa0558390:CDS |
| ATTCTGGAAATATACGAAAA+TGG | 0.382739 | 4_1:+57099105 | None:intergenic |
| TTCTTTCTAGCTTCCTGCAC+TGG | 0.393614 | 4_1:-57098706 | Msa0558390:CDS |
| TGAAGTTCCTTATGGTCTCT+TGG | 0.393992 | 4_1:-57097689 | Msa0558390:CDS |
| ATCTTACACGTGTGCTGAGC+TGG | 0.396198 | 4_1:-57096725 | Msa0558390:CDS |
| GTCTGGAGTTTGTCTTATGC+GGG | 0.399394 | 4_1:-57097761 | Msa0558390:CDS |
| ATGGGAAGGTAAGGAGCCTT+TGG | 0.400415 | 4_1:+57099137 | None:intergenic |
| GTACCGGTTGGGCTGCTTGT+CGG | 0.407943 | 4_1:-57098903 | Msa0558390:CDS |
| TTTGCACTTGGGGATTGTGC+TGG | 0.420564 | 4_1:-57097454 | Msa0558390:CDS |
| TTGGTTTGGTCCACAGGAGT+TGG | 0.429676 | 4_1:-57097670 | Msa0558390:CDS |
| TCCTTACCTTCCCATGTAGA+TGG | 0.433038 | 4_1:-57099129 | Msa0558390:CDS |
| TGATACAGAATTGGTGTTGA+TGG | 0.434223 | 4_1:-57097508 | Msa0558390:intron |
| CTGAATCTTCCAAGCTCTCC+AGG | 0.437706 | 4_1:-57097625 | Msa0558390:CDS |
| GTGGAAGATGTCTTTGCACT+TGG | 0.442231 | 4_1:-57097466 | Msa0558390:CDS |
| GATGGAACTGAAGTTCCTTA+TGG | 0.446289 | 4_1:-57097697 | Msa0558390:CDS |
| AACAAAATTGGGAAACAGAA+TGG | 0.446795 | 4_1:-57097060 | Msa0558390:CDS |
| TACCTTCCACCTGGAGAGCT+TGG | 0.449786 | 4_1:+57097616 | None:intergenic |
| CAGCAACAGACCTGAATTCA+AGG | 0.450864 | 4_1:+57098779 | None:intergenic |
| AGTTCCTGTTATTCCCCTCT+TGG | 0.451235 | 4_1:+57099056 | None:intergenic |
| TCTAGTCCTGCATATCTTGT+CGG | 0.452195 | 4_1:+57098967 | None:intergenic |
| AGAGTGGTTGTTCTCGGTAC+CGG | 0.453887 | 4_1:-57098919 | Msa0558390:CDS |
| ACGAAAATGGTCCATCTACA+TGG | 0.454099 | 4_1:+57099118 | None:intergenic |
| GGTTGTTCTCGGTACCGGTT+GGG | 0.456139 | 4_1:-57098914 | Msa0558390:CDS |
| AGCTAGAAAGAAGTATGAGT+TGG | 0.457476 | 4_1:+57098717 | None:intergenic |
| TGGAAGATGTCTTTGCACTT+GGG | 0.463774 | 4_1:-57097465 | Msa0558390:CDS |
| TGAGCTAAAGCTGGAAGCAC+TGG | 0.467552 | 4_1:+57097409 | None:intergenic |
| GTGTGCTGAGCTGGAGGAAT+CGG | 0.469117 | 4_1:-57096716 | Msa0558390:CDS |
| CATATCACCAAGGAATCATA+TGG | 0.470079 | 4_1:-57098839 | Msa0558390:CDS |
| AAACCGACAAGCAGCCCAAC+CGG | 0.471084 | 4_1:+57098900 | None:intergenic |
| AGAAGCAACCTGAGAAGATC+AGG | 0.472613 | 4_1:-57099219 | Msa0558390:CDS |
| GCATCCTGTATTCTACCAAC+AGG | 0.478437 | 4_1:+57098754 | None:intergenic |
| GTGAAAACCATATGATTCCT+TGG | 0.479965 | 4_1:+57098832 | None:intergenic |
| AGTGCTTCCAGCTTTAGCTC+AGG | 0.480412 | 4_1:-57097407 | Msa0558390:intron |
| AAGCAACACCTGATCTTCTC+AGG | 0.480533 | 4_1:+57099211 | None:intergenic |
| TCTGCAGATGGCATCACACT+TGG | 0.481006 | 4_1:-57097024 | Msa0558390:CDS |
| GACAAGCTTGTAATTGCAGC+TGG | 0.484313 | 4_1:-57098445 | Msa0558390:CDS |
| TAACACACAAAGAGTTATAG+AGG | 0.487725 | 4_1:-57099016 | Msa0558390:CDS |
| AAGCCTAGAGTGGTTGTTCT+CGG | 0.488864 | 4_1:-57098925 | Msa0558390:CDS |
| GACCAAACCAAGAGACCATA+AGG | 0.496146 | 4_1:+57097682 | None:intergenic |
| TATGCAACTTTGAATTGGTA+AGG | 0.497896 | 4_1:+57098469 | None:intergenic |
| TGGTTGTTCTCGGTACCGGT+TGG | 0.498770 | 4_1:-57098915 | Msa0558390:CDS |
| CAATTTGTGTATAAACATAT+GGG | 0.504254 | 4_1:-57096997 | Msa0558390:CDS |
| GGAAGATGTCTTTGCACTTG+GGG | 0.505360 | 4_1:-57097464 | Msa0558390:CDS |
| GTTTGTGTCAACTCCAGTGC+AGG | 0.507620 | 4_1:+57098693 | None:intergenic |
| TCTTATGCGGGGTGTGGTGA+AGG | 0.508837 | 4_1:-57097749 | Msa0558390:CDS |
| AGGCTAACCTGAGCTAAAGC+TGG | 0.509934 | 4_1:+57097400 | None:intergenic |
| GCTAGAAAGAAGTATGAGTT+GGG | 0.516821 | 4_1:+57098718 | None:intergenic |
| CTCTTTAGATAATCCACCAT+TGG | 0.522845 | 4_1:+57098492 | None:intergenic |
| TCCATCTACATGGGAAGGTA+AGG | 0.529367 | 4_1:+57099128 | None:intergenic |
| CATTCATGTCACACTCATTG+AGG | 0.529894 | 4_1:-57098036 | Msa0558390:intron |
| ATACTTTCATCCTTTGACGT+TGG | 0.533948 | 4_1:-57097906 | Msa0558390:CDS |
| AGTCTGGAGTTTGTCTTATG+CGG | 0.535341 | 4_1:-57097762 | Msa0558390:CDS |
| CTGTCGAAGGCCAACGTCAA+AGG | 0.536614 | 4_1:+57097896 | None:intergenic |
| TGGAAGTAATGTACATGAGA+AGG | 0.538179 | 4_1:-57099187 | Msa0558390:CDS |
| TTTGTGTGTTAGGGAGCTGA+TGG | 0.540218 | 4_1:+57099028 | None:intergenic |
| TCTTTGGCAGAGACAACAGC+AGG | 0.541549 | 4_1:-57096659 | Msa0558390:CDS |
| ATAAGGCACTTGTTGATCTA+CGG | 0.542831 | 4_1:-57096951 | Msa0558390:CDS |
| GGCAGAGACAACAGCAGGAT+AGG | 0.543946 | 4_1:-57096654 | Msa0558390:CDS |
| GGACTAGAGGCAACAAAACC+AGG | 0.554285 | 4_1:-57098952 | Msa0558390:CDS |
| GTCTCTGCCAAAGACAAAAG+TGG | 0.556692 | 4_1:+57096668 | None:intergenic |
| GATGATCCGACAAGATATGC+AGG | 0.562686 | 4_1:-57098973 | Msa0558390:CDS |
| AGGTCTGTTGCTGAGCCTGT+TGG | 0.569427 | 4_1:-57098769 | Msa0558390:CDS |
| ACAGAATTGGTGTTGATGGA+TGG | 0.570983 | 4_1:-57097504 | Msa0558390:intron |
| GTACCGAGAACAACCACTCT+AGG | 0.573776 | 4_1:+57098922 | None:intergenic |
| GGAAAGGCTTTGTCTGCAGA+TGG | 0.574116 | 4_1:-57097036 | Msa0558390:CDS |
| TCTTATGTTATAGGATGCAA+AGG | 0.575813 | 4_1:-57096796 | Msa0558390:intron |
| AATGGTCCATCTACATGGGA+AGG | 0.577054 | 4_1:+57099123 | None:intergenic |
| TTGTTGGCTTCAACATGTGT+TGG | 0.577991 | 4_1:-57098805 | Msa0558390:CDS |
| CTGATGCTTTCTGAAAATCC+AGG | 0.580189 | 4_1:-57098319 | Msa0558390:intron |
| TGCGAGGCAGTTACCAATGG+TGG | 0.582363 | 4_1:-57098505 | Msa0558390:CDS |
| GAGAGAACATTTACATCCAA+AGG | 0.583362 | 4_1:-57099153 | Msa0558390:CDS |
| TGAGCCTGTTGGTAGAATAC+AGG | 0.585959 | 4_1:-57098758 | Msa0558390:CDS |
| GGCTTCACATACCTTCCACC+TGG | 0.586382 | 4_1:+57097607 | None:intergenic |
| TTCCAAGCTCTCCAGGTGGA+AGG | 0.587295 | 4_1:-57097618 | Msa0558390:intron |
| AGTTTGTCTTATGCGGGGTG+TGG | 0.589261 | 4_1:-57097755 | Msa0558390:CDS |
| TACTGCGAGGCAGTTACCAA+TGG | 0.597374 | 4_1:-57098508 | Msa0558390:CDS |
| CTTATGTTATAGGATGCAAA+GGG | 0.602916 | 4_1:-57096795 | Msa0558390:intron |
| TGTTGATCTACGGCAATCCA+AGG | 0.602932 | 4_1:-57096941 | Msa0558390:intron |
| TGGGAAACAGAATGGAGGAA+AGG | 0.603382 | 4_1:-57097052 | Msa0558390:CDS |
| ATGGGGAGCATGGCATCAGT+AGG | 0.604143 | 4_1:-57096979 | Msa0558390:CDS |
| GTATAAACATATGGGGAGCA+TGG | 0.604718 | 4_1:-57096989 | Msa0558390:CDS |
| AATACAGGATGCACTAGCAA+AGG | 0.606941 | 4_1:-57098743 | Msa0558390:CDS |
| ATGGATGCGTGTTCCGTCTG+TGG | 0.610196 | 4_1:-57097485 | Msa0558390:CDS |
| CTATAACAATGGCATTAGCA+AGG | 0.610697 | 4_1:-57099248 | None:intergenic |
| CTCAGAGGGACCAACTCCTG+TGG | 0.615481 | 4_1:+57097660 | None:intergenic |
| CGAAAATGGTCCATCTACAT+GGG | 0.615536 | 4_1:+57099119 | None:intergenic |
| TATGCGGGGTGTGGTGAAGG+AGG | 0.616063 | 4_1:-57097746 | Msa0558390:CDS |
| GACAAGATATGCAGGACTAG+AGG | 0.619013 | 4_1:-57098965 | Msa0558390:CDS |
| GCTTCGTTGCATACTGTCGA+AGG | 0.629576 | 4_1:+57097883 | None:intergenic |
| GCAAAGACATCTTCCACAGA+CGG | 0.636642 | 4_1:+57097472 | None:intergenic |
| TTACACGTGTGCTGAGCTGG+AGG | 0.642106 | 4_1:-57096722 | Msa0558390:CDS |
| TCTGGAGTTTGTCTTATGCG+GGG | 0.644473 | 4_1:-57097760 | Msa0558390:CDS |
| AGCAACAGACCTGAATTCAA+GGG | 0.646467 | 4_1:+57098780 | None:intergenic |
| ACCAGGTGAAAAGCCTAGAG+TGG | 0.649954 | 4_1:-57098935 | Msa0558390:CDS |
| TGACAGGTTGCTGAAAGACA+AGG | 0.650294 | 4_1:-57097105 | Msa0558390:intron |
| ACACATGTTGAAGCCAACAA+AGG | 0.657554 | 4_1:+57098808 | None:intergenic |
| AAAATTGGGAAACAGAATGG+AGG | 0.666719 | 4_1:-57097057 | Msa0558390:CDS |
| AATTTGTGTATAAACATATG+GGG | 0.676076 | 4_1:-57096996 | Msa0558390:CDS |
| TGCAACGAAGCACTTAACAA+AGG | 0.676652 | 4_1:-57097871 | Msa0558390:intron |
| AATCTTCCAAGCTCTCCAGG+TGG | 0.690106 | 4_1:-57097622 | Msa0558390:CDS |
| ATGTCAACAGGTCTACTGCG+AGG | 0.733020 | 4_1:-57098521 | Msa0558390:intron |
| ATGTTGTGTGCATATCACCA+AGG | 0.767641 | 4_1:-57098849 | Msa0558390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTTTAAATTTTAATATC+TGG | + | chr4_1:57098224-57098243 | None:intergenic | 10.0% |
| !!! | ATTTGTTATAATAATTATGC+AGG | - | chr4_1:57097551-57097570 | Msa0558390:intron | 15.0% |
| !!! | GTATAGTTTTTCTAAAAGAA+GGG | + | chr4_1:57097166-57097185 | None:intergenic | 20.0% |
| !!! | AGTATAGTTTTTCTAAAAGA+AGG | + | chr4_1:57097167-57097186 | None:intergenic | 20.0% |
| !!! | AAAATGTTTTTCATTATGAC+AGG | - | chr4_1:57097610-57097629 | Msa0558390:intron | 20.0% |
| !! | AATTATGAAAAGTTAAACAG+TGG | + | chr4_1:57097870-57097889 | None:intergenic | 20.0% |
| !!! | CTGTTTAACTTTTCATAATT+AGG | - | chr4_1:57097870-57097889 | Msa0558390:intron | 20.0% |
| !! | AGACAATATAGATAAATGTT+AGG | + | chr4_1:57098486-57098505 | None:intergenic | 20.0% |
| !!! | TCTATTGGAATTTTTTACAT+TGG | + | chr4_1:57098515-57098534 | None:intergenic | 20.0% |
| !! | AATGTAAAAAATTCCAATAG+AGG | - | chr4_1:57098514-57098533 | Msa0558390:CDS | 20.0% |
| !! | ATGTAAAAAATTCCAATAGA+GGG | - | chr4_1:57098515-57098534 | Msa0558390:intron | 20.0% |
| !! | ACAATTTGTGTATAAACATA+TGG | - | chr4_1:57098809-57098828 | Msa0558390:CDS | 20.0% |
| !! | CAATTTGTGTATAAACATAT+GGG | - | chr4_1:57098810-57098829 | Msa0558390:CDS | 20.0% |
| !! | AATTTGTGTATAAACATATG+GGG | - | chr4_1:57098811-57098830 | Msa0558390:CDS | 20.0% |
| !! | CAAAATGTATCTTATGTTAT+AGG | - | chr4_1:57099002-57099021 | Msa0558390:CDS | 20.0% |
| !! | AAATAATGTGTCAAAAAAGT+GGG | + | chr4_1:57099217-57099236 | None:intergenic | 20.0% |
| !! | AAAATAATGTGTCAAAAAAG+TGG | + | chr4_1:57099218-57099237 | None:intergenic | 20.0% |
| !!! | ACTTTTTTGACACATTATTT+TGG | - | chr4_1:57099217-57099236 | Msa0558390:CDS | 20.0% |
| !! | ATTCTGGAAATATACGAAAA+TGG | + | chr4_1:57096705-57096724 | None:intergenic | 25.0% |
| ! | TTCGTATATTTCCAGAATTA+AGG | - | chr4_1:57096707-57096726 | Msa0558390:CDS | 25.0% |
| ! | GAAAAACTATACTGTTACAA+TGG | - | chr4_1:57097174-57097193 | Msa0558390:intron | 25.0% |
| ! | GCTTAAAACTAAACTAAGTA+TGG | + | chr4_1:57097528-57097547 | None:intergenic | 25.0% |
| ! | TGTTATAATAATTATGCAGG+TGG | - | chr4_1:57097554-57097573 | Msa0558390:intron | 25.0% |
| ! | GTTATAATAATTATGCAGGT+GGG | - | chr4_1:57097555-57097574 | Msa0558390:intron | 25.0% |
| !!! | GTCATTATTTTTTTTGCCAA+AGG | - | chr4_1:57097579-57097598 | Msa0558390:intron | 25.0% |
| ! | GACAGTTAATTATTGAAGAT+TGG | + | chr4_1:57097992-57098011 | None:intergenic | 25.0% |
| !! | ATTCAATTTTTGTATCAGTC+TGG | - | chr4_1:57098029-57098048 | Msa0558390:intron | 25.0% |
| !! | ATCACTCAAAACTATCTTTT+GGG | + | chr4_1:57098093-57098112 | None:intergenic | 25.0% |
| ! | ACAAAACATCATAGACAATA+AGG | + | chr4_1:57098430-57098449 | None:intergenic | 25.0% |
| ! | TAGAGTTGTTCAACAAAATT+GGG | - | chr4_1:57098736-57098755 | Msa0558390:CDS | 25.0% |
| ! | ACAACATGAAATTTTCCAAG+AGG | - | chr4_1:57096736-57096755 | Msa0558390:CDS | 30.0% |
| ! | CAACATGAAATTTTCCAAGA+GGG | - | chr4_1:57096737-57096756 | Msa0558390:CDS | 30.0% |
| ! | AACATGAAATTTTCCAAGAG+GGG | - | chr4_1:57096738-57096757 | Msa0558390:CDS | 30.0% |
| CTATAACTCTTTGTGTGTTA+GGG | + | chr4_1:57096791-57096810 | None:intergenic | 30.0% | |
| TCTATAACTCTTTGTGTGTT+AGG | + | chr4_1:57096792-57096811 | None:intergenic | 30.0% | |
| TAACACACAAAGAGTTATAG+AGG | - | chr4_1:57096791-57096810 | Msa0558390:intron | 30.0% | |
| ! | CAATTTTACTTCATGTCAAC+AGG | - | chr4_1:57097274-57097293 | Msa0558390:intron | 30.0% |
| TATGCAACTTTGAATTGGTA+AGG | + | chr4_1:57097341-57097360 | None:intergenic | 30.0% | |
| TGTCATATGCAACTTTGAAT+TGG | + | chr4_1:57097346-57097365 | None:intergenic | 30.0% | |
| !! | CCTTTAACTTTTGGTATCAA+GGG | - | chr4_1:57097392-57097411 | Msa0558390:intron | 30.0% |
| TGTATCATGCTCAAGAAATA+AGG | - | chr4_1:57097447-57097466 | Msa0558390:CDS | 30.0% | |
| !! | TTTCAGAAAGCATCAGATTA+AGG | + | chr4_1:57097484-57097503 | None:intergenic | 30.0% |
| ! | TCACTCAAAACTATCTTTTG+GGG | + | chr4_1:57098092-57098111 | None:intergenic | 30.0% |
| ! | CATCACTCAAAACTATCTTT+TGG | + | chr4_1:57098094-57098113 | None:intergenic | 30.0% |
| !!! | CAAAAGATAGTTTTGAGTGA+TGG | - | chr4_1:57098092-57098111 | Msa0558390:intron | 30.0% |
| !!! | AGTTTTTTGACAAACTCAGA+GGG | + | chr4_1:57098164-57098183 | None:intergenic | 30.0% |
| GTTGTTGAATGATACAGAAT+TGG | - | chr4_1:57098290-57098309 | Msa0558390:intron | 30.0% | |
| ! | TGATGTTTTGTCAGTACATA+TGG | - | chr4_1:57098439-57098458 | Msa0558390:CDS | 30.0% |
| ATGCATAGTACTACAGAAAT+AGG | - | chr4_1:57098581-57098600 | Msa0558390:intron | 30.0% | |
| ! | TTTTGTTGAACAACTCTACA+AGG | + | chr4_1:57098734-57098753 | None:intergenic | 30.0% |
| GTAGAGTTGTTCAACAAAAT+TGG | - | chr4_1:57098735-57098754 | Msa0558390:CDS | 30.0% | |
| AACAAAATTGGGAAACAGAA+TGG | - | chr4_1:57098747-57098766 | Msa0558390:CDS | 30.0% | |
| CTCTAATGTCTAATTTACAC+TGG | - | chr4_1:57098921-57098940 | Msa0558390:CDS | 30.0% | |
| TCTTATGTTATAGGATGCAA+AGG | - | chr4_1:57099011-57099030 | Msa0558390:CDS | 30.0% | |
| CTTATGTTATAGGATGCAAA+GGG | - | chr4_1:57099012-57099031 | Msa0558390:CDS | 30.0% | |
| TGGAAGTAATGTACATGAGA+AGG | - | chr4_1:57096620-57096639 | Msa0558390:three_prime_UTR | 35.0% | |
| GAGAGAACATTTACATCCAA+AGG | - | chr4_1:57096654-57096673 | Msa0558390:CDS | 35.0% | |
| GTTGTTCTGTTCCTTAATTC+TGG | + | chr4_1:57096721-57096740 | None:intergenic | 35.0% | |
| CATATCACCAAGGAATCATA+TGG | - | chr4_1:57096968-57096987 | Msa0558390:CDS | 35.0% | |
| GTGAAAACCATATGATTCCT+TGG | + | chr4_1:57096978-57096997 | None:intergenic | 35.0% | |
| ! | TATGGTTTTCACTCCTTTGT+TGG | - | chr4_1:57096986-57097005 | Msa0558390:CDS | 35.0% |
| ! | GCTAGAAAGAAGTATGAGTT+GGG | + | chr4_1:57097092-57097111 | None:intergenic | 35.0% |
| ! | AGCTAGAAAGAAGTATGAGT+TGG | + | chr4_1:57097093-57097112 | None:intergenic | 35.0% |
| CTCTTTAGATAATCCACCAT+TGG | + | chr4_1:57097318-57097337 | None:intergenic | 35.0% | |
| !! | GCCTTTAACTTTTGGTATCA+AGG | - | chr4_1:57097391-57097410 | Msa0558390:intron | 35.0% |
| CCCTTGATACCAAAAGTTAA+AGG | + | chr4_1:57097395-57097414 | None:intergenic | 35.0% | |
| ! | TTTTGGTATCAAGGGAGTAA+AGG | - | chr4_1:57097400-57097419 | Msa0558390:intron | 35.0% |
| !! | AACATTTTCAGCTTAGCCTT+TGG | + | chr4_1:57097598-57097617 | None:intergenic | 35.0% |
| ATACTTTCATCCTTTGACGT+TGG | - | chr4_1:57097901-57097920 | Msa0558390:CDS | 35.0% | |
| ATACGCGATCAAAACACAAA+AGG | + | chr4_1:57097966-57097985 | None:intergenic | 35.0% | |
| !!! | CAGTTTTTTGACAAACTCAG+AGG | + | chr4_1:57098165-57098184 | None:intergenic | 35.0% |
| !! | TGATACAGAATTGGTGTTGA+TGG | - | chr4_1:57098299-57098318 | Msa0558390:intron | 35.0% |
| ! | GTTTTCTTGAACAAACTGGA+AGG | - | chr4_1:57098375-57098394 | Msa0558390:CDS | 35.0% |
| AAAATTGGGAAACAGAATGG+AGG | - | chr4_1:57098750-57098769 | Msa0558390:CDS | 35.0% | |
| TAGATCAACAAGTGCCTTAT+AGG | + | chr4_1:57098856-57098875 | None:intergenic | 35.0% | |
| ! | ATAAGGCACTTGTTGATCTA+CGG | - | chr4_1:57098856-57098875 | Msa0558390:CDS | 35.0% |
| GAAACTTTCCCATTATACCT+TGG | + | chr4_1:57098886-57098905 | None:intergenic | 35.0% | |
| ATGTGTCAAAAAAGTGGGAT+AGG | + | chr4_1:57099212-57099231 | None:intergenic | 35.0% | |
| !!! | GACACATTATTTTGGTTGAG+TGG | - | chr4_1:57099225-57099244 | Msa0558390:CDS | 35.0% |
| !!! | AGAAGATCAGGTGTTGCTTT+TGG | - | chr4_1:57096600-57096619 | Msa0558390:three_prime_UTR | 40.0% |
| CGAAAATGGTCCATCTACAT+GGG | + | chr4_1:57096691-57096710 | None:intergenic | 40.0% | |
| ACGAAAATGGTCCATCTACA+TGG | + | chr4_1:57096692-57096711 | None:intergenic | 40.0% | |
| ! | TTTTCCAAGAGGGGAATAAC+AGG | - | chr4_1:57096747-57096766 | Msa0558390:CDS | 40.0% |
| TCTAGTCCTGCATATCTTGT+CGG | + | chr4_1:57096843-57096862 | None:intergenic | 40.0% | |
| !! | CTGCTTGTCGGTTTCTTAAA+GGG | - | chr4_1:57096916-57096935 | Msa0558390:intron | 40.0% |
| ATGTTGTGTGCATATCACCA+AGG | - | chr4_1:57096958-57096977 | Msa0558390:CDS | 40.0% | |
| ACACATGTTGAAGCCAACAA+AGG | + | chr4_1:57097002-57097021 | None:intergenic | 40.0% | |
| !! | TTGTTGGCTTCAACATGTGT+TGG | - | chr4_1:57097002-57097021 | Msa0558390:CDS | 40.0% |
| AGCAACAGACCTGAATTCAA+GGG | + | chr4_1:57097030-57097049 | None:intergenic | 40.0% | |
| AATACAGGATGCACTAGCAA+AGG | - | chr4_1:57097064-57097083 | Msa0558390:CDS | 40.0% | |
| ! | CTGATGCTTTCTGAAAATCC+AGG | - | chr4_1:57097488-57097507 | Msa0558390:CDS | 40.0% |
| ! | ATGCTTTCTGAAAATCCAGG+TGG | - | chr4_1:57097491-57097510 | Msa0558390:CDS | 40.0% |
| ! | TGCTTTCTGAAAATCCAGGT+GGG | - | chr4_1:57097492-57097511 | Msa0558390:CDS | 40.0% |
| CTGCTGCATTGTGTAGTTAT+TGG | - | chr4_1:57097658-57097677 | Msa0558390:CDS | 40.0% | |
| CTGCATTGTGTAGTTATTGG+AGG | - | chr4_1:57097661-57097680 | Msa0558390:CDS | 40.0% | |
| CATTGTGTAGTTATTGGAGG+TGG | - | chr4_1:57097664-57097683 | Msa0558390:CDS | 40.0% | |
| CATTCATGTCACACTCATTG+AGG | - | chr4_1:57097771-57097790 | Msa0558390:intron | 40.0% | |
| ! | TGCAACGAAGCACTTAACAA+AGG | - | chr4_1:57097936-57097955 | Msa0558390:intron | 40.0% |
| ! | AGTCTGGAGTTTGTCTTATG+CGG | - | chr4_1:57098045-57098064 | Msa0558390:intron | 40.0% |
| GATGGAACTGAAGTTCCTTA+TGG | - | chr4_1:57098110-57098129 | Msa0558390:intron | 40.0% | |
| TGAAGTTCCTTATGGTCTCT+TGG | - | chr4_1:57098118-57098137 | Msa0558390:intron | 40.0% | |
| TTCCTTATGGTCTCTTGGTT+TGG | - | chr4_1:57098123-57098142 | Msa0558390:intron | 40.0% | |
| !! | ACAGAATTGGTGTTGATGGA+TGG | - | chr4_1:57098303-57098322 | Msa0558390:intron | 40.0% |
| TGGAAGATGTCTTTGCACTT+GGG | - | chr4_1:57098342-57098361 | Msa0558390:CDS | 40.0% | |
| !!! | GCTGGTTTTCTTGAACAAAC+TGG | - | chr4_1:57098371-57098390 | Msa0558390:CDS | 40.0% |
| GTATAAACATATGGGGAGCA+TGG | - | chr4_1:57098818-57098837 | Msa0558390:CDS | 40.0% | |
| TACGGCAATCCAAGGTATAA+TGG | - | chr4_1:57098874-57098893 | Msa0558390:CDS | 40.0% | |
| ACGGCAATCCAAGGTATAAT+GGG | - | chr4_1:57098875-57098894 | Msa0558390:CDS | 40.0% | |
| !! | GTTTTGTCAGCTGGTTGATA+TGG | - | chr4_1:57099049-57099068 | Msa0558390:CDS | 40.0% |
| ! | GTTTTACGTGGCAGTTAACT+GGG | - | chr4_1:57099113-57099132 | Msa0558390:CDS | 40.0% |
| ! | TTTTACGTGGCAGTTAACTG+GGG | - | chr4_1:57099114-57099133 | Msa0558390:CDS | 40.0% |
| !! | CAGCAGGATAGGTTGAATTT+TGG | - | chr4_1:57099164-57099183 | Msa0558390:CDS | 40.0% |
| AGAAGCAACCTGAGAAGATC+AGG | - | chr4_1:57096588-57096607 | Msa0558390:three_prime_UTR | 45.0% | |
| AAGCAACACCTGATCTTCTC+AGG | + | chr4_1:57096599-57096618 | None:intergenic | 45.0% | |
| TCCTTACCTTCCCATGTAGA+TGG | - | chr4_1:57096678-57096697 | Msa0558390:CDS | 45.0% | |
| TCCATCTACATGGGAAGGTA+AGG | + | chr4_1:57096682-57096701 | None:intergenic | 45.0% | |
| AATGGTCCATCTACATGGGA+AGG | + | chr4_1:57096687-57096706 | None:intergenic | 45.0% | |
| AGTTCCTGTTATTCCCCTCT+TGG | + | chr4_1:57096754-57096773 | None:intergenic | 45.0% | |
| TTTGTGTGTTAGGGAGCTGA+TGG | + | chr4_1:57096782-57096801 | None:intergenic | 45.0% | |
| GATGATCCGACAAGATATGC+AGG | - | chr4_1:57096834-57096853 | Msa0558390:intron | 45.0% | |
| GACAAGATATGCAGGACTAG+AGG | - | chr4_1:57096842-57096861 | Msa0558390:intron | 45.0% | |
| AAGCCTAGAGTGGTTGTTCT+CGG | - | chr4_1:57096882-57096901 | Msa0558390:intron | 45.0% | |
| !! | GCTGCTTGTCGGTTTCTTAA+AGG | - | chr4_1:57096915-57096934 | Msa0558390:intron | 45.0% |
| ! | GTGTTGGTACCCTTGAATTC+AGG | - | chr4_1:57097018-57097037 | Msa0558390:CDS | 45.0% |
| CAGCAACAGACCTGAATTCA+AGG | + | chr4_1:57097031-57097050 | None:intergenic | 45.0% | |
| ! | TGAGCCTGTTGGTAGAATAC+AGG | - | chr4_1:57097049-57097068 | Msa0558390:CDS | 45.0% |
| GCATCCTGTATTCTACCAAC+AGG | + | chr4_1:57097056-57097075 | None:intergenic | 45.0% | |
| !! | TTCTTTCTAGCTTCCTGCAC+TGG | - | chr4_1:57097101-57097120 | Msa0558390:CDS | 45.0% |
| GACAAGCTTGTAATTGCAGC+TGG | - | chr4_1:57097362-57097381 | Msa0558390:intron | 45.0% | |
| !! | GGAGCTGAGCCTTTAACTTT+TGG | - | chr4_1:57097383-57097402 | Msa0558390:intron | 45.0% |
| ATGGATATGAAACACCCACC+TGG | + | chr4_1:57097509-57097528 | None:intergenic | 45.0% | |
| CCACTAAATTCCACTCCTGT+AGG | + | chr4_1:57097691-57097710 | None:intergenic | 45.0% | |
| CCTACAGGAGTGGAATTTAG+TGG | - | chr4_1:57097688-57097707 | Msa0558390:CDS | 45.0% | |
| ! | GTCTGGAGTTTGTCTTATGC+GGG | - | chr4_1:57098046-57098065 | Msa0558390:intron | 45.0% |
| ! | TCTGGAGTTTGTCTTATGCG+GGG | - | chr4_1:57098047-57098066 | Msa0558390:intron | 45.0% |
| GACCAAACCAAGAGACCATA+AGG | + | chr4_1:57098128-57098147 | None:intergenic | 45.0% | |
| GCAAAGACATCTTCCACAGA+CGG | + | chr4_1:57098338-57098357 | None:intergenic | 45.0% | |
| GTGGAAGATGTCTTTGCACT+TGG | - | chr4_1:57098341-57098360 | Msa0558390:CDS | 45.0% | |
| GGAAGATGTCTTTGCACTTG+GGG | - | chr4_1:57098343-57098362 | Msa0558390:CDS | 45.0% | |
| !! | TCCAATAGAGGGTACTTGAC+AGG | - | chr4_1:57098526-57098545 | Msa0558390:intron | 45.0% |
| GAGTATACTTTCCTATGCGC+TGG | - | chr4_1:57098675-57098694 | Msa0558390:intron | 45.0% | |
| TGACAGGTTGCTGAAAGACA+AGG | - | chr4_1:57098702-57098721 | Msa0558390:CDS | 45.0% | |
| TGGGAAACAGAATGGAGGAA+AGG | - | chr4_1:57098755-57098774 | Msa0558390:CDS | 45.0% | |
| TGTTGATCTACGGCAATCCA+AGG | - | chr4_1:57098866-57098885 | Msa0558390:CDS | 45.0% | |
| ! | GGTTTTACGTGGCAGTTAAC+TGG | - | chr4_1:57099112-57099131 | Msa0558390:CDS | 45.0% |
| !! | TGGGGAACCACTTTTGTCTT+TGG | - | chr4_1:57099132-57099151 | Msa0558390:CDS | 45.0% |
| GTCTCTGCCAAAGACAAAAG+TGG | + | chr4_1:57099142-57099161 | None:intergenic | 45.0% | |
| ATGGGAAGGTAAGGAGCCTT+TGG | + | chr4_1:57096673-57096692 | None:intergenic | 50.0% | |
| GGACTAGAGGCAACAAAACC+AGG | - | chr4_1:57096855-57096874 | Msa0558390:intron | 50.0% | |
| ACCAGGTGAAAAGCCTAGAG+TGG | - | chr4_1:57096872-57096891 | Msa0558390:intron | 50.0% | |
| ! | ACCACTCTAGGCTTTTCACC+TGG | + | chr4_1:57096876-57096895 | None:intergenic | 50.0% |
| GTACCGAGAACAACCACTCT+AGG | + | chr4_1:57096888-57096907 | None:intergenic | 50.0% | |
| AGAGTGGTTGTTCTCGGTAC+CGG | - | chr4_1:57096888-57096907 | Msa0558390:intron | 50.0% | |
| GTTTGTGTCAACTCCAGTGC+AGG | + | chr4_1:57097117-57097136 | None:intergenic | 50.0% | |
| ATGTCAACAGGTCTACTGCG+AGG | - | chr4_1:57097286-57097305 | Msa0558390:intron | 50.0% | |
| TACTGCGAGGCAGTTACCAA+TGG | - | chr4_1:57097299-57097318 | Msa0558390:intron | 50.0% | |
| GTTATTGGAGGTGGTCCTAC+AGG | - | chr4_1:57097673-57097692 | Msa0558390:CDS | 50.0% | |
| GCTTCGTTGCATACTGTCGA+AGG | + | chr4_1:57097927-57097946 | None:intergenic | 50.0% | |
| AGTTTGTCTTATGCGGGGTG+TGG | - | chr4_1:57098052-57098071 | Msa0558390:intron | 50.0% | |
| !! | TTGGTTTGGTCCACAGGAGT+TGG | - | chr4_1:57098137-57098156 | Msa0558390:intron | 50.0% |
| CTGAATCTTCCAAGCTCTCC+AGG | - | chr4_1:57098182-57098201 | Msa0558390:intron | 50.0% | |
| AATCTTCCAAGCTCTCCAGG+TGG | - | chr4_1:57098185-57098204 | Msa0558390:intron | 50.0% | |
| TTTGCACTTGGGGATTGTGC+TGG | - | chr4_1:57098353-57098372 | Msa0558390:CDS | 50.0% | |
| ! | TGAGCTAAAGCTGGAAGCAC+TGG | + | chr4_1:57098401-57098420 | None:intergenic | 50.0% |
| ! | AGTGCTTCCAGCTTTAGCTC+AGG | - | chr4_1:57098400-57098419 | Msa0558390:CDS | 50.0% |
| AGGCTAACCTGAGCTAAAGC+TGG | + | chr4_1:57098410-57098429 | None:intergenic | 50.0% | |
| GCCTGTCAAGTACCCTCTAT+TGG | + | chr4_1:57098530-57098549 | None:intergenic | 50.0% | |
| ! | GGAAAGGCTTTGTCTGCAGA+TGG | - | chr4_1:57098771-57098790 | Msa0558390:CDS | 50.0% |
| TCTGCAGATGGCATCACACT+TGG | - | chr4_1:57098783-57098802 | Msa0558390:CDS | 50.0% | |
| GGCATCAGTAGGTGCCTATA+AGG | - | chr4_1:57098839-57098858 | Msa0558390:CDS | 50.0% | |
| ! | GCAAAGGGATTGTCACTTGC+TGG | - | chr4_1:57099027-57099046 | Msa0558390:CDS | 50.0% |
| !!! | CACTTGCTGGTTTTGTCAGC+TGG | - | chr4_1:57099040-57099059 | Msa0558390:CDS | 50.0% |
| ATCTTACACGTGTGCTGAGC+TGG | - | chr4_1:57099082-57099101 | Msa0558390:CDS | 50.0% | |
| !! | CTGGAGGAATCGGTTTTACG+TGG | - | chr4_1:57099101-57099120 | Msa0558390:CDS | 50.0% |
| TCTTTGGCAGAGACAACAGC+AGG | - | chr4_1:57099148-57099167 | Msa0558390:CDS | 50.0% | |
| !! | TGGTTGTTCTCGGTACCGGT+TGG | - | chr4_1:57096892-57096911 | Msa0558390:intron | 55.0% |
| !! | GGTTGTTCTCGGTACCGGTT+GGG | - | chr4_1:57096893-57096912 | Msa0558390:intron | 55.0% |
| AAACCGACAAGCAGCCCAAC+CGG | + | chr4_1:57096910-57096929 | None:intergenic | 55.0% | |
| AGGTCTGTTGCTGAGCCTGT+TGG | - | chr4_1:57097038-57097057 | Msa0558390:CDS | 55.0% | |
| TGCGAGGCAGTTACCAATGG+TGG | - | chr4_1:57097302-57097321 | Msa0558390:intron | 55.0% | |
| CTGTCGAAGGCCAACGTCAA+AGG | + | chr4_1:57097914-57097933 | None:intergenic | 55.0% | |
| TCTTATGCGGGGTGTGGTGA+AGG | - | chr4_1:57098058-57098077 | Msa0558390:intron | 55.0% | |
| !! | GGTCTCTTGGTTTGGTCCAC+AGG | - | chr4_1:57098131-57098150 | Msa0558390:intron | 55.0% |
| TTCCAAGCTCTCCAGGTGGA+AGG | - | chr4_1:57098189-57098208 | Msa0558390:intron | 55.0% | |
| TACCTTCCACCTGGAGAGCT+TGG | + | chr4_1:57098194-57098213 | None:intergenic | 55.0% | |
| GGCTTCACATACCTTCCACC+TGG | + | chr4_1:57098203-57098222 | None:intergenic | 55.0% | |
| ATGGATGCGTGTTCCGTCTG+TGG | - | chr4_1:57098322-57098341 | Msa0558390:CDS | 55.0% | |
| ! | ATGGGGAGCATGGCATCAGT+AGG | - | chr4_1:57098828-57098847 | Msa0558390:CDS | 55.0% |
| TTACACGTGTGCTGAGCTGG+AGG | - | chr4_1:57099085-57099104 | Msa0558390:CDS | 55.0% | |
| GTGTGCTGAGCTGGAGGAAT+CGG | - | chr4_1:57099091-57099110 | Msa0558390:CDS | 55.0% | |
| GGCAGAGACAACAGCAGGAT+AGG | - | chr4_1:57099153-57099172 | Msa0558390:CDS | 55.0% | |
| !! | GTACCGGTTGGGCTGCTTGT+CGG | - | chr4_1:57096904-57096923 | Msa0558390:intron | 60.0% |
| TGGAGGTGGTCCTACAGGAG+TGG | - | chr4_1:57097678-57097697 | Msa0558390:CDS | 60.0% | |
| TATGCGGGGTGTGGTGAAGG+AGG | - | chr4_1:57098061-57098080 | Msa0558390:intron | 60.0% | |
| CTCAGAGGGACCAACTCCTG+TGG | + | chr4_1:57098150-57098169 | None:intergenic | 60.0% | |
| CCTGTCAGTGACCAGCGCAT+AGG | + | chr4_1:57098689-57098708 | None:intergenic | 60.0% | |
| ! | CCTATGCGCTGGTCACTGAC+AGG | - | chr4_1:57098686-57098705 | Msa0558390:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 57096567 | 57099262 | 57096567 | ID=Msa0558390;Name=Msa0558390 |
| chr4_1 | mRNA | 57096567 | 57099262 | 57096567 | ID=Msa0558390-mRNA-1;Parent=Msa0558390;Name=Msa0558390-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.85|0.75|1|1|1|8|83|499 |
| chr4_1 | exon | 57096567 | 57096805 | 57096567 | ID=Msa0558390-mRNA-1:exon:17337;Parent=Msa0558390-mRNA-1 |
| chr4_1 | exon | 57096942 | 57097121 | 57096942 | ID=Msa0558390-mRNA-1:exon:17336;Parent=Msa0558390-mRNA-1 |
| chr4_1 | exon | 57097408 | 57097522 | 57097408 | ID=Msa0558390-mRNA-1:exon:17335;Parent=Msa0558390-mRNA-1 |
| chr4_1 | exon | 57097619 | 57097782 | 57097619 | ID=Msa0558390-mRNA-1:exon:17334;Parent=Msa0558390-mRNA-1 |
| chr4_1 | exon | 57097872 | 57097937 | 57097872 | ID=Msa0558390-mRNA-1:exon:17333;Parent=Msa0558390-mRNA-1 |
| chr4_1 | exon | 57098037 | 57098062 | 57098037 | ID=Msa0558390-mRNA-1:exon:17332;Parent=Msa0558390-mRNA-1 |
| chr4_1 | exon | 57098320 | 57098533 | 57098320 | ID=Msa0558390-mRNA-1:exon:17331;Parent=Msa0558390-mRNA-1 |
| chr4_1 | exon | 57098684 | 57099262 | 57098684 | ID=Msa0558390-mRNA-1:exon:17330;Parent=Msa0558390-mRNA-1 |
| chr4_1 | CDS | 57098684 | 57099262 | 57098684 | ID=Msa0558390-mRNA-1:cds;Parent=Msa0558390-mRNA-1 |
| chr4_1 | CDS | 57098320 | 57098533 | 57098320 | ID=Msa0558390-mRNA-1:cds;Parent=Msa0558390-mRNA-1 |
| chr4_1 | CDS | 57098037 | 57098062 | 57098037 | ID=Msa0558390-mRNA-1:cds;Parent=Msa0558390-mRNA-1 |
| chr4_1 | CDS | 57097872 | 57097937 | 57097872 | ID=Msa0558390-mRNA-1:cds;Parent=Msa0558390-mRNA-1 |
| chr4_1 | CDS | 57097619 | 57097782 | 57097619 | ID=Msa0558390-mRNA-1:cds;Parent=Msa0558390-mRNA-1 |
| chr4_1 | CDS | 57097408 | 57097522 | 57097408 | ID=Msa0558390-mRNA-1:cds;Parent=Msa0558390-mRNA-1 |
| chr4_1 | CDS | 57096942 | 57097121 | 57096942 | ID=Msa0558390-mRNA-1:cds;Parent=Msa0558390-mRNA-1 |
| chr4_1 | CDS | 57096650 | 57096805 | 57096650 | ID=Msa0558390-mRNA-1:cds;Parent=Msa0558390-mRNA-1 |
| chr4_1 | three_prime_UTR | 57096567 | 57096649 | 57096567 | ID=Msa0558390-mRNA-1:three_prime_utr;Parent=Msa0558390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
