AlfalfaGEDB | Msa0276730

M. sativa cultivar zhongmu-4 / Msa0276730

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276730	XP_013462896.1	94.376	729	19	1	1	707	1	729	0.0	1401

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276730	sp\|Q6R2J8\|SRF8_ARATH	68.252	715	185	9	16	707	8	703	0.0	961

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0049450	Msa0276730	0.800188	1.620169e-48	-8.615850e-47
Msa0058130	Msa0276730	0.814233	1.710349e-51	-8.615850e-47
Msa0084990	Msa0276730	0.854519	1.166327e-61	-8.615850e-47
Msa0105040	Msa0276730	0.817599	3.033088e-52	-8.615850e-47
Msa0177830	Msa0276730	0.838220	3.272466e-57	-8.615850e-47
Msa0177970	Msa0276730	0.835133	2.003228e-56	-8.615850e-47
Msa0186560	Msa0276730	0.826321	2.892740e-54	-8.615850e-47
Msa0197050	Msa0276730	0.925503	1.679712e-90	-8.615850e-47
Msa0204970	Msa0276730	0.804855	1.767629e-49	-8.615850e-47
Msa0238880	Msa0276730	0.908697	1.287690e-81	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276730	MtrunA17_Chr2g0289161	94.376	729	19	1	1	707	1	729	0.0	1401
Msa0276730	MtrunA17_Chr7g0276571	50.073	687	293	13	39	685	24	700	0.0	589
Msa0276730	MtrunA17_Chr8g0345471	46.101	731	331	14	16	705	8	716	0.0	582
Msa0276730	MtrunA17_Chr4g0000081	43.300	709	320	10	41	701	25	699	0.0	545
Msa0276730	MtrunA17_Chr2g0323941	41.451	772	334	16	13	681	16	772	4.51e-176	522
Msa0276730	MtrunA17_Chr2g0281501	42.937	715	337	17	18	674	9	710	8.27e-158	473
Msa0276730	MtrunA17_Chr7g0258451	36.457	683	344	13	37	697	23	637	1.07e-124	385
Msa0276730	MtrunA17_Chr4g0022431	59.547	309	124	1	373	681	528	835	1.21e-121	383
Msa0276730	MtrunA17_Chr4g0022431	37.805	328	152	7	27	311	16	334	3.58e-47	179
Msa0276730	MtrunA17_Chr1g0174841	46.398	347	164	6	356	684	33	375	8.08e-97	305

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276730	AT4G22130.1	68.252	715	185	9	16	707	8	703	0.0	961
Msa0276730	AT4G22130.2	71.057	577	151	7	132	707	1	562	0.0	815
Msa0276730	AT1G53730.1	48.133	723	317	12	24	700	8	718	0.0	598
Msa0276730	AT1G53730.2	48.204	724	316	13	24	700	8	719	0.0	595
Msa0276730	AT3G14350.1	47.194	695	298	9	41	685	27	702	0.0	572
Msa0276730	AT3G14350.2	46.930	684	294	8	52	685	1	665	0.0	563
Msa0276730	AT1G78980.1	43.644	708	323	11	39	700	22	699	0.0	537
Msa0276730	AT3G14350.3	44.604	695	288	10	41	685	27	674	1.14e-173	513
Msa0276730	AT4G03390.2	41.923	749	321	16	36	679	26	765	1.34e-172	513
Msa0276730	AT4G03390.1	41.923	749	321	16	36	679	26	765	1.34e-172	513

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Find 199 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCGATGTTTACAGCTT+TGG	0.367787	2_3:-8961017	Msa0276730:CDS
AAAAGGTCATACCATCAGTA+GGG	0.603662	2_3:+8965251	None:intergenic
AAAAGGTTACCTTCCCATTT+GGG	0.337601	2_3:+8961974	None:intergenic
AAAGCTAAAAGGGAAGGAAA+AGG	0.521868	2_3:-8962447	Msa0276730:CDS
AAAGTGGTGAAGCTATTATT+CGG	0.524991	2_3:-8959953	Msa0276730:three_prime_UTR
AAATTTCTATGTACAACAGA+GGG	0.579453	2_3:+8961313	None:intergenic
AACATACAGAGAAGAGAGAC+TGG	0.523051	2_3:+8963091	None:intergenic
AACGAGCAAGCGTCGTTAAA+AGG	0.305833	2_3:-8960090	Msa0276730:CDS
AAGATATTTGTAATTAGTGT+TGG	0.436083	2_3:-8959866	Msa0276730:three_prime_UTR
AAGCCACAGTCAGACAGGTG+AGG	0.647295	2_3:+8961253	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAGAACAAGGAAATTAAA+AGG	+	chr2_3:8959663-8959682	None:intergenic	30.0%
AAGAAGAAGAAAAACAAGAG+AGG	+	chr2_3:8959804-8959823	None:intergenic	30.0%
GAAGTGAAAAGACAAGAAAA+GGG	+	chr2_3:8959885-8959904	None:intergenic	30.0%
AGAAGTGAAAAGACAAGAAA+AGG	+	chr2_3:8959886-8959905	None:intergenic	30.0%
TTTCACTTCTCAAACTACAA+TGG	-	chr2_3:8959896-8959915	Msa0276730:three_prime_UTR	30.0%
TGAAGCAAGAAAGAGAAAAA+TGG	+	chr2_3:8959928-8959947	None:intergenic	30.0%
AGAATGATCACACGAAAAAA+AGG	+	chr2_3:8960015-8960034	None:intergenic	30.0%
ACCAAACTTGAACAAGTAAA+GGG	+	chr2_3:8960110-8960129	None:intergenic	30.0%
AACCAAACTTGAACAAGTAA+AGG	+	chr2_3:8960111-8960130	None:intergenic	30.0%
AATGCAGGGAATAAAAGAAA+AGG	-	chr2_3:8960620-8960639	Msa0276730:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	8959608	8965660	8959608	ID=Msa0276730;Name=Msa0276730
chr2_3	mRNA	8959608	8965660	8959608	ID=Msa0276730-mRNA-1;Parent=Msa0276730;Name=Msa0276730-mRNA-1;_AED=0.16;_eAED=0.16;_QI=262\|0.92\|1\|1\|1\|1\|15\|413\|707
chr2_3	exon	8959608	8960173	8959608	ID=Msa0276730-mRNA-1:exon:4101;Parent=Msa0276730-mRNA-1
chr2_3	exon	8960692	8960848	8960692	ID=Msa0276730-mRNA-1:exon:4100;Parent=Msa0276730-mRNA-1
chr2_3	exon	8960972	8961114	8960972	ID=Msa0276730-mRNA-1:exon:4099;Parent=Msa0276730-mRNA-1
chr2_3	exon	8961222	8961357	8961222	ID=Msa0276730-mRNA-1:exon:4098;Parent=Msa0276730-mRNA-1
chr2_3	exon	8961609	8961880	8961609	ID=Msa0276730-mRNA-1:exon:4097;Parent=Msa0276730-mRNA-1
chr2_3	exon	8961984	8962243	8961984	ID=Msa0276730-mRNA-1:exon:4096;Parent=Msa0276730-mRNA-1
chr2_3	exon	8962402	8962715	8962402	ID=Msa0276730-mRNA-1:exon:4095;Parent=Msa0276730-mRNA-1
chr2_3	exon	8962809	8962874	8962809	ID=Msa0276730-mRNA-1:exon:4094;Parent=Msa0276730-mRNA-1
chr2_3	exon	8962948	8963013	8962948	ID=Msa0276730-mRNA-1:exon:4093;Parent=Msa0276730-mRNA-1
chr2_3	exon	8963098	8963169	8963098	ID=Msa0276730-mRNA-1:exon:4092;Parent=Msa0276730-mRNA-1
chr2_3	exon	8963491	8963562	8963491	ID=Msa0276730-mRNA-1:exon:4091;Parent=Msa0276730-mRNA-1
chr2_3	exon	8963658	8963729	8963658	ID=Msa0276730-mRNA-1:exon:4090;Parent=Msa0276730-mRNA-1
chr2_3	exon	8964119	8964190	8964119	ID=Msa0276730-mRNA-1:exon:4089;Parent=Msa0276730-mRNA-1
chr2_3	exon	8964299	8964431	8964299	ID=Msa0276730-mRNA-1:exon:4088;Parent=Msa0276730-mRNA-1
chr2_3	exon	8965263	8965660	8965263	ID=Msa0276730-mRNA-1:exon:4087;Parent=Msa0276730-mRNA-1
chr2_3	five_prime_UTR	8965399	8965660	8965399	ID=Msa0276730-mRNA-1:five_prime_utr;Parent=Msa0276730-mRNA-1
chr2_3	CDS	8965263	8965398	8965263	ID=Msa0276730-mRNA-1:cds;Parent=Msa0276730-mRNA-1
chr2_3	CDS	8964299	8964431	8964299	ID=Msa0276730-mRNA-1:cds;Parent=Msa0276730-mRNA-1
chr2_3	CDS	8964119	8964190	8964119	ID=Msa0276730-mRNA-1:cds;Parent=Msa0276730-mRNA-1
chr2_3	CDS	8963658	8963729	8963658	ID=Msa0276730-mRNA-1:cds;Parent=Msa0276730-mRNA-1
chr2_3	CDS	8963491	8963562	8963491	ID=Msa0276730-mRNA-1:cds;Parent=Msa0276730-mRNA-1
chr2_3	CDS	8963098	8963169	8963098	ID=Msa0276730-mRNA-1:cds;Parent=Msa0276730-mRNA-1
chr2_3	CDS	8962948	8963013	8962948	ID=Msa0276730-mRNA-1:cds;Parent=Msa0276730-mRNA-1
chr2_3	CDS	8962809	8962874	8962809	ID=Msa0276730-mRNA-1:cds;Parent=Msa0276730-mRNA-1
chr2_3	CDS	8962402	8962715	8962402	ID=Msa0276730-mRNA-1:cds;Parent=Msa0276730-mRNA-1
chr2_3	CDS	8961984	8962243	8961984	ID=Msa0276730-mRNA-1:cds;Parent=Msa0276730-mRNA-1
chr2_3	CDS	8961609	8961880	8961609	ID=Msa0276730-mRNA-1:cds;Parent=Msa0276730-mRNA-1
chr2_3	CDS	8961222	8961357	8961222	ID=Msa0276730-mRNA-1:cds;Parent=Msa0276730-mRNA-1
chr2_3	CDS	8960972	8961114	8960972	ID=Msa0276730-mRNA-1:cds;Parent=Msa0276730-mRNA-1
chr2_3	CDS	8960692	8960848	8960692	ID=Msa0276730-mRNA-1:cds;Parent=Msa0276730-mRNA-1
chr2_3	CDS	8960021	8960173	8960021	ID=Msa0276730-mRNA-1:cds;Parent=Msa0276730-mRNA-1
chr2_3	three_prime_UTR	8959608	8960020	8959608	ID=Msa0276730-mRNA-1:three_prime_utr;Parent=Msa0276730-mRNA-1

Gene Sequence

>Msa0276730

ATGAATGAACCACCCTTTTCTTGTCTTTTCACTTCTCAAACTACAATGGCGCATACCATTTTTCTCTTTCTTGCTTCATTCTCTTTTTTCCTTGCTGCTTTTCCTCTTTCTCTTGCTAACACTGACCCTACTGATGTTCAAGCTCTTGAGGTCATGTACAATGCGTTCAATAATCCAACTGAACTAACTGGTTGGAAAATTGGTGGTGGTGATCCATGTGGAGATTCATGGAAAGGGATAACTTGTGAGGGTTCATCTGTTGTTTCAATTGATCTCTCTGGTTTAGGACTCCATGGGACTCTTGGATACTTGCTCTCAGACCTTATGTCACTCAGAAAGCTAAACCTTGCAAGAAATAACTTAACTGGAAATCTTCCGTATTCCATTTCTGCCATGGTTTCACTCACTTATATGAATGTGAGCAATAATGCACTCTCTTTGCCAATCGGAGAAGTTTTTGCTAATCATTCCCATCTTGATACCCTGGATTTATCATTTAATAACTTTTCTGGGGATCTTCCACCTTCATTTGCTACACTGTCCAGTCTCTCTTCTCTTTTCTTGCAGAAGAACCAATTGACTGGCTCTCTTAGCGTTCTTGTTGGTTTGCCTTTGGATACTTTAAATATTGCAAAGAATAATTTCAATGGATCGATACCTCCTGAGCTTAAATCTATCAATAATTTCATATATGATGGAAGTTCTATCGATGATGGCCCTGCACCTCCTTCGACGGAATCTACTTCACCTCCACCTCGTGAATCTGATAAAAGTAATCCTCACTCCGGGTCTGGTTCACATACTAAAAGACATGGTTCTGATGATAAAAAATCTGATGACCATCAGAGAACGTCAGCGGGGGCCATTGTAGGGATTGTTTTAGGTTCAGTGTTGGTGTCTTCTGTCTTGCTAGTTGCTATTGTTTTCTGTATCCGAAAGCTAAAAGGGAAGGAAAAGGGTGCAAGAACTTCAAACGGGAGCCTTCCTCCTCGAATCATCAATGTAACTCCTCAAATGCAAGAGCAAAGGGTGAAAAGTGCTGCCGTTATTACAGATCTCAAACCTCGTCCTCCTGCAGAAAATGTGACGATGGATAGGATGCCTATGAAAAGTGGATCTGTAAAGCAGATGAGGTCTCCCATCACTTCCACATCATACACAGTTGCTTCGCTCCAGAGTGCAACAAATAGCTTCAGTCAAGAATTTATTATTGGTGAAGGTTCTCTTGGTCGAGTTTACAAGGCTGAATTCCCAAATGGGAAGGTTATGGCTGTCAAGAAGATTGACAACGCAGCACTGTCTTTACAAGAGGAAGACAATTTTCTTGAAGCTATTTCTAATATGTCACGCTTGCGGCATCCGAACGTTGTTACACTTGCTGGATATTGTGCAGAACATGGCCAGAGGCTTCTAATTTATGAATATATTGGAAATGGAAATTTGCACGACATGCTCCATTTTGCCGAAGATAGCAGTAAAGCTTTACCTTGGAATGCTCGTGTACGCATAGCTCTTGGCACAGCCCGGGCCTTAGAGTACTTGCACGAAGTTTGCTTACCCTCTGTTGTACATAGAAATTTCAAATCAGCAAATATATTACTCGACGAGGAGCTCAATCCTCACCTGTCTGACTGTGGCTTAGCTGCTCTGACACCAAACACTGAGCGACAGGTATCTTCAACTCAGATGGTCGGTTCATTTGGTTATAGCGCTCCTGAATTTGCATTATCAGGAGTATATACTGTAAAAAGCGATGTTTACAGCTTTGGCGTGGTTATGTTGGAACTTTTAACTGGTCGGAAGCCACTTGACAGTTCAAGAGTTCGAGCCGAGCAATCACTTGTGAGGTGGGCTACACCGCAGCTCCATGATATAGATGCCTTGTCAAAAATGGTTGATCCTTGTTTGAATGGCATGTACCCTGCAAAGTCGTTGTCACGCTTCGCTGATATCATTGCCCTCTGCGTTCAGCCGGAACCCGAATTTCGACCTCCAATGTCCGAGGTGGTGCAAGCATTGGTCCGGTTAGTGCAACGAGCAAGCGTCGTTAAAAGGAGACCAAGTGATGAATCTGGTTTTGGTCACAAGACCCCAGACCATGAGGCCATGGACATATCATTTTAA

Protein sequence

>Msa0276730

MNEPPFSCLFTSQTTMAHTIFLFLASFSFFLAAFPLSLANTDPTDVQALEVMYNAFNNPTELTGWKIGGGDPCGDSWKGITCEGSSVVSIDLSGLGLHGTLGYLLSDLMSLRKLNLARNNLTGNLPYSISAMVSLTYMNVSNNALSLPIGEVFANHSHLDTLDLSFNNFSGDLPPSFATLSSLSSLFLQKNQLTGSLSVLVGLPLDTLNIAKNNFNGSIPPELKSINNFIYDGSSIDDGPAPPSTESTSPPPRESDKSNPHSGSGSHTKRHGSDDKKSDDHQRTSAGAIVGIVLGSVLVSSVLLVAIVFCIRKLKGKEKGARTSNGSLPPRIINVTPQMQEQRVKSAAVITDLKPRPPAENVTMDRMPMKSGSVKQMRSPITSTSYTVASLQSATNSFSQEFIIGEGSLGRVYKAEFPNGKVMAVKKIDNAALSLQEEDNFLEAISNMSRLRHPNVVTLAGYCAEHGQRLLIYEYIGNGNLHDMLHFAEDSSKALPWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRVRAEQSLVRWATPQLHDIDALSKMVDPCLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGFGHKTPDHEAMDISF*