AlfalfaGEDB | Msa0560570

M. sativa cultivar zhongmu-4 / Msa0560570

KEGG: K15920
GO: GO:0000272 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0030312 GO:0031221 GO:0031222 GO:0043170 GO:0043207 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044464 GO:0045087 GO:0045491 GO:0045493 GO:0046556 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071554 GO:0071704 GO:0071944 GO:0097599 GO:0098542 GO:1901575
PFAM: PF00933.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0560570	XP_013457212.1	98.708	774	10	0	1	774	1	774	0.0	1591

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0560570	sp\|A5JTQ3\|XYL2_MEDSV	99.225	774	6	0	1	774	1	774	0.0	1590

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0560570	A0A072UQA9	98.708	774	10	0	1	774	1	774	0.0	1591

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006840	Msa0560570	0.816842	4.488785e-52	-8.615850e-47
Msa0030070	Msa0560570	0.814843	1.252902e-51	-8.615850e-47
Msa0032980	Msa0560570	0.842072	3.232419e-58	-8.615850e-47
Msa0040640	Msa0560570	0.814672	1.367673e-51	-8.615850e-47
Msa0049450	Msa0560570	0.842842	2.020228e-58	-8.615850e-47
Msa0050530	Msa0560570	0.803462	3.445915e-49	-8.615850e-47
Msa0079410	Msa0560570	0.805122	1.555017e-49	-8.615850e-47
Msa0091350	Msa0560570	0.863725	2.027682e-64	-8.615850e-47
Msa0094180	Msa0560570	0.815670	8.207593e-52	-8.615850e-47
Msa0100600	Msa0560570	0.806669	7.351619e-50	-8.615850e-47

Showing 1 to 10 of 164 entries

Previous1 2 3 4 5…17Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0560570	MtrunA17_Chr4g0050591	98.708	774	10	0	1	774	1	774	1591
Msa0560570	MtrunA17_Chr2g0278761	85.032	775	115	1	1	774	1	775	1367
Msa0560570	MtrunA17_Chr1g0194841	57.332	757	311	5	19	772	8	755	895
Msa0560570	MtrunA17_Chr7g0269871	57.235	774	306	9	8	772	4	761	894
Msa0560570	MtrunA17_Chr2g0294751	57.778	765	300	9	14	772	7	754	878
Msa0560570	MtrunA17_Chr1g0207281	55.627	773	303	12	13	764	22	775	843
Msa0560570	MtrunA17_Chr5g0411571	47.943	778	373	11	20	774	14	782	753
Msa0560570	MtrunA17_Chr3g0115601	47.119	781	380	15	14	774	9	776	717
Msa0560570	MtrunA17_Chr5g0425471	46.164	782	391	13	14	774	10	782	714
Msa0560570	MtrunA17_Chr5g0425431	46.183	786	394	14	10	774	3	780	714

Showing 1 to 10 of 23 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0560570	AT5G64570.1	71.355	782	205	4	5	774	10	784	1189
Msa0560570	AT5G09730.1	68.229	768	232	3	12	774	13	773	1125
Msa0560570	AT5G64570.2	72.887	627	163	2	154	774	1	626	994
Msa0560570	AT5G64570.3	73.729	590	142	3	5	588	10	592	906
Msa0560570	AT3G19620.1	56.407	757	316	7	18	764	6	758	883
Msa0560570	AT1G02640.1	54.941	759	335	4	15	772	6	758	868
Msa0560570	AT5G49360.1	57.723	764	305	10	19	772	15	770	867
Msa0560570	AT5G10560.1	47.656	768	361	9	39	772	30	790	743
Msa0560570	AT1G78060.1	47.340	752	370	11	40	774	25	767	723
Msa0560570	AT5G09700.1	66.598	482	155	2	299	774	45	526	688

Showing 1 to 10 of 31 entries

Previous1 2 3 4Next

Find 203 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCACAAGCATTCTG+TGG	0.568704	4_1:+59853159	Msa0560570:CDS
AAAATCTGTATGTTCTACCA+GGG	0.669451	4_1:-59853824	None:intergenic
AAAGAAGCTGCAATGAGAAT+AGG	0.464509	4_1:-59850953	None:intergenic
AAAGATCACAAGCATTCTGT+GGG	0.588555	4_1:+59853160	Msa0560570:CDS
AAAGCCAACAAGTGTTTCTG+AGG	0.625434	4_1:-59854113	None:intergenic
AAAGGAACAGACACCAATTG+TGG	0.639642	4_1:-59853921	None:intergenic
AAAGGTGATGTATATTTGCA+TGG	0.623811	4_1:-59852843	None:intergenic
AAATATACATCACCTTTGCA+AGG	0.638543	4_1:+59852849	Msa0560570:CDS
AACATGGGAAGGAATCTCTG+TGG	0.741639	4_1:-59850353	None:intergenic
AACCCGTAATTCGCCAATGC+TGG	0.444375	4_1:-59850710	None:intergenic

Showing 1 to 10 of 203 entries

Previous1 2 3 4 5…21Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCAAATTCTCAAGGTCATAA+TGG	+	chr4_1:59850553-59850572	Msa0560570:exon	30.0%
TTGGGATTCCAAAATATGAA+TGG	+	chr4_1:59850843-59850862	Msa0560570:CDS	30.0%
TGTTCCTACAATCAAGTAAA+TGG	+	chr4_1:59851551-59851570	Msa0560570:CDS	30.0%
TGAAAACAAGCTATAGAATG+CGG	+	chr4_1:59851723-59851742	Msa0560570:intron	30.0%
TTGTTCACTGTAATTCTATC+CGG	+	chr4_1:59851776-59851795	Msa0560570:intron	30.0%
CAAAATAAACTCATGTTTGC+TGG	-	chr4_1:59851981-59852000	None:intergenic	30.0%
TGTCGCAAAATTATTGTAGA+CGG	-	chr4_1:59852464-59852483	None:intergenic	30.0%
TGCCAAAGCTATTAAATCAT+TGG	+	chr4_1:59852645-59852664	Msa0560570:CDS	30.0%
TGCCAATGATTTAATAGCTT+TGG	-	chr4_1:59852650-59852669	None:intergenic	30.0%
CCTATAAAAGTTATAGGAGT+GGG	-	chr4_1:59852737-59852756	None:intergenic	30.0%

Showing 1 to 10 of 290 entries

Previous1 2 3 4 5…29Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	59850311	59854483	59850311	ID=Msa0560570;Name=Msa0560570
chr4_1	mRNA	59850311	59854483	59850311	ID=Msa0560570-mRNA-1;Parent=Msa0560570;Name=Msa0560570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=261\|1\|1\|1\|1\|1\|7\|182\|774
chr4_1	exon	59850311	59851006	59850311	ID=Msa0560570-mRNA-1:exon:18565;Parent=Msa0560570-mRNA-1
chr4_1	exon	59851099	59851386	59851099	ID=Msa0560570-mRNA-1:exon:18566;Parent=Msa0560570-mRNA-1
chr4_1	exon	59851470	59851639	59851470	ID=Msa0560570-mRNA-1:exon:18567;Parent=Msa0560570-mRNA-1
chr4_1	exon	59852105	59852202	59852105	ID=Msa0560570-mRNA-1:exon:18568;Parent=Msa0560570-mRNA-1
chr4_1	exon	59852371	59852721	59852371	ID=Msa0560570-mRNA-1:exon:18569;Parent=Msa0560570-mRNA-1
chr4_1	exon	59852838	59853248	59852838	ID=Msa0560570-mRNA-1:exon:18570;Parent=Msa0560570-mRNA-1
chr4_1	exon	59853730	59854483	59853730	ID=Msa0560570-mRNA-1:exon:18571;Parent=Msa0560570-mRNA-1
chr4_1	five_prime_UTR	59850311	59850571	59850311	ID=Msa0560570-mRNA-1:five_prime_utr;Parent=Msa0560570-mRNA-1
chr4_1	CDS	59850572	59851006	59850572	ID=Msa0560570-mRNA-1:cds;Parent=Msa0560570-mRNA-1
chr4_1	CDS	59851099	59851386	59851099	ID=Msa0560570-mRNA-1:cds;Parent=Msa0560570-mRNA-1
chr4_1	CDS	59851470	59851639	59851470	ID=Msa0560570-mRNA-1:cds;Parent=Msa0560570-mRNA-1
chr4_1	CDS	59852105	59852202	59852105	ID=Msa0560570-mRNA-1:cds;Parent=Msa0560570-mRNA-1
chr4_1	CDS	59852371	59852721	59852371	ID=Msa0560570-mRNA-1:cds;Parent=Msa0560570-mRNA-1
chr4_1	CDS	59852838	59853248	59852838	ID=Msa0560570-mRNA-1:cds;Parent=Msa0560570-mRNA-1
chr4_1	CDS	59853730	59854301	59853730	ID=Msa0560570-mRNA-1:cds;Parent=Msa0560570-mRNA-1
chr4_1	three_prime_UTR	59854302	59854483	59854302	ID=Msa0560570-mRNA-1:three_prime_utr;Parent=Msa0560570-mRNA-1

Gene Sequence

>Msa0560570

ATGGCCTCTGTTGAAAACAGAACACCTAACGTCTCTGTTTTCCTCTGTTTCTTTGTTCTGTTTGCCACACTTTTGCTGAGTTGTGGTCGAGTTTCGAGCCAAACATCTGCAGTTTTCGCCTGCGATGTTGCCAAGAATCCAGCATTGGCGAATTACGGGTTCTGCAACAAGAAATTGAGTGTGGATGCAAGGGTGAAAGACCTTGTGAGAAGGTTGACATTGCAAGAGAAGGTTGGTAACCTTGTGAATTCTGCTGTTGATGTAAGCAGACTTGGGATTCCAAAATATGAATGGTGGTCTGAAGCACTTCATGGAGTCTCTAACATTGGTCCAGGAACTCATTTTTCCAATGTTATACCTGGAGCAACCAGTTTTCCTATGCCTATTCTCATTGCAGCTTCTTTCAATGCTTCCTTGTTTCAAACCATAGGAAAGGTGGTTTCGACGGAAGCAAGAGCAATGCACAACGTCGGGTTGGCTGGTTTAACATATTGGTCACCAAACATTAACATATTTAGGGATCCAAGATGGGGAAGAGGTCAAGAAACACCAGGAGAAGACCCTTTACTTGCTAGCAAATATGCAGCAGGGTACGTGAAAGGTCTACAACAAACTGATGATGGAGATTCCAACAAGCTTAAGGTTGCTGCTTGTTGCAAACACTACACAGCATATGATGTTGATGACTGGAAAGGTGTTCAGCGTTACACCTTCAATGCTGTGGTGACACAACAAGATTTAGATGACACGTACCAACCACCTTTTAAGAGCTGTGTGATTGATGGAAATGTTGCTAGTGTTATGTGTTCCTACAATCAAGTAAATGGAAAACCGACTTGTGCTGACCCTGATCTTCTTAAAGGTGTTATCCGTGGCAAATGGAAACTAAATGGATATATAGTCTCTGATTGTGACTCAGTAGATGTGCTTTTCAAAAATCAACATTACACCAAGACCCCTGAGGAAGCTGCAGCCAAGTCCATTCTAGCAGGATTGGATTTGAACTGTGGAAGTTTTCTTGGCCGATATACAGAAGGTGCTGTCAAGCAAGGGCTTATAGGTGAAGCATCCATTAACAATGCCGTCTACAATAATTTTGCGACATTAATGCGTCTAGGTTTCTTTGATGGCGATCCTAGCAAGCAACCTTATGGAAACCTTGGTCCAAAAGATGTCTGCACTTCAGCAAACCAGGAGCTAGCTCGTGAAGCTGCAAGGCAAGGGATTGTGTTGCTTAAAAACTGTGCAGGATCATTGCCTCTGAATGCCAAAGCTATTAAATCATTGGCAGTTATTGGGCCCAATGCTAATGCTACTAGGGCCATGATTGGAAACTACGAAGGCATTCCATGCAAATATACATCACCTTTGCAAGGCCTAACAGCCTTAGTTCCCACAAGCTTTGCTGCTGGCTGTCCTGATGTTCAATGCACCAATGCTGCACTAGACGATGCCAAAAGGATTGCAGCCTCAGCAGATGCAACCGTGATTGTAGTCGGTGCAAATCTTGCAATAGAGGCAGAGAGTCATGACAGGATTAACATACTTCTTCCAGGACAGCAGCAACAGTTAGTTACAGAAGTTGCAAATGTAGCTAAGGGACCTGTGATTCTTGCCATAATGTCTGGAGGAGGCATGGATGTTTCCTTTGCTAAAACTAATAAAAAGATCACAAGCATTCTGTGGGTTGGCTATCCTGGAGAAGCTGGTGGAGCTGCCATAGCTGATGTCATCTTTGGGTATCATAATCCAAGTGGAAGGCTACCCATGACATGGTATCCACAATCATATGTAGACAAAGTACCAATGACCAATATGAACATGAGGCCGGATCCTGCTACAGGCTACCCTGGTAGAACATACAGATTTTATAAAGGGGAAACTGTCTTCTCATTTGGAGATGGAATAAGCTACTCAACTTTCGAGCATAAATTGGTTAAAGCACCACAATTGGTGTCTGTTCCTTTAGCTGAGGATCACGTTTGTCGTTCCTCAAAATGTAAGTCGCTTGATGTTGTTGGCGAACATTGTCAAAACTTAGCCTTTGATATTCACCTCAGGATCAAGAACAAAGGGAAAATGAGCAGTAGCCAAACAGTGTTTTTGTTCTCTACTCCTCCTGCAGTGCACAATGCACCTCAGAAACACTTGTTGGCTTTCGAGAAAGTACACTTGACAGGAAAATCAGAAGCACTGGTCAGTTTCAAAGTAGATGTTTGTAATGATTTGAGTGTGGTTGATGAACTTGGCAACAGAAAAGTTGCCCTAGGAAAACATATGCTTCATGTAGGAGACTTGAAGCATCCTTTGAGCGTGATGATTTAA

Protein sequence

>Msa0560570

MASVENRTPNVSVFLCFFVLFATLLLSCGRVSSQTSAVFACDVAKNPALANYGFCNKKLSVDARVKDLVRRLTLQEKVGNLVNSAVDVSRLGIPKYEWWSEALHGVSNIGPGTHFSNVIPGATSFPMPILIAASFNASLFQTIGKVVSTEARAMHNVGLAGLTYWSPNINIFRDPRWGRGQETPGEDPLLASKYAAGYVKGLQQTDDGDSNKLKVAACCKHYTAYDVDDWKGVQRYTFNAVVTQQDLDDTYQPPFKSCVIDGNVASVMCSYNQVNGKPTCADPDLLKGVIRGKWKLNGYIVSDCDSVDVLFKNQHYTKTPEEAAAKSILAGLDLNCGSFLGRYTEGAVKQGLIGEASINNAVYNNFATLMRLGFFDGDPSKQPYGNLGPKDVCTSANQELAREAARQGIVLLKNCAGSLPLNAKAIKSLAVIGPNANATRAMIGNYEGIPCKYTSPLQGLTALVPTSFAAGCPDVQCTNAALDDAKRIAASADATVIVVGANLAIEAESHDRINILLPGQQQQLVTEVANVAKGPVILAIMSGGGMDVSFAKTNKKITSILWVGYPGEAGGAAIADVIFGYHNPSGRLPMTWYPQSYVDKVPMTNMNMRPDPATGYPGRTYRFYKGETVFSFGDGISYSTFEHKLVKAPQLVSVPLAEDHVCRSSKCKSLDVVGEHCQNLAFDIHLRIKNKGKMSSSQTVFLFSTPPAVHNAPQKHLLAFEKVHLTGKSEALVSFKVDVCNDLSVVDELGNRKVALGKHMLHVGDLKHPLSVMI*