Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684750 | KYP58465.1 | 100.000 | 136 | 0 | 0 | 1 | 136 | 5 | 140 | 1.76e-92 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684750 | sp|P68428|H32_WHEAT | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 5.15e-95 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684750 | A0A452Z7H5 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 3.73e-93 | 278 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0684750 | 0.846923 | 1.600932e-59 | -8.615850e-47 |
| Msa0027800 | Msa0684750 | 0.828658 | 7.956487e-55 | -8.615850e-47 |
| Msa0030070 | Msa0684750 | 0.838772 | 2.357255e-57 | -8.615850e-47 |
| Msa0032980 | Msa0684750 | 0.807893 | 4.046175e-50 | -8.615850e-47 |
| Msa0045620 | Msa0684750 | 0.805937 | 1.048728e-49 | -8.615850e-47 |
| Msa0049450 | Msa0684750 | 0.840295 | 9.477174e-58 | -8.615850e-47 |
| Msa0050530 | Msa0684750 | 0.850074 | 2.148396e-60 | -8.615850e-47 |
| Msa0058130 | Msa0684750 | 0.834191 | 3.456726e-56 | -8.615850e-47 |
| Msa0078130 | Msa0684750 | 0.820957 | 5.211118e-53 | -8.615850e-47 |
| Msa0091350 | Msa0684750 | 0.853518 | 2.266660e-61 | -8.615850e-47 |
| Msa0094180 | Msa0684750 | 0.805503 | 1.293853e-49 | -8.615850e-47 |
| Msa0100600 | Msa0684750 | 0.838501 | 2.769410e-57 | -8.615850e-47 |
| Msa0100890 | Msa0684750 | 0.849416 | 3.278793e-60 | -8.615850e-47 |
| Msa0106630 | Msa0684750 | 0.802464 | 5.540473e-49 | -8.615850e-47 |
| Msa0109730 | Msa0684750 | 0.821549 | 3.805902e-53 | -8.615850e-47 |
| Msa0608350 | Msa0684750 | 0.817249 | 3.637181e-52 | -8.615850e-47 |
| Msa0612520 | Msa0684750 | 0.804153 | 2.475961e-49 | -8.615850e-47 |
| Msa0615630 | Msa0684750 | 0.800142 | 1.655966e-48 | -8.615850e-47 |
| Msa0618840 | Msa0684750 | 0.813957 | 1.967963e-51 | -8.615850e-47 |
| Msa0618990 | Msa0684750 | 0.811473 | 6.880511e-51 | -8.615850e-47 |
| Msa0620500 | Msa0684750 | 0.824089 | 9.749115e-54 | -8.615850e-47 |
| Msa0645340 | Msa0684750 | 0.807526 | 4.842560e-50 | -8.615850e-47 |
| Msa0647440 | Msa0684750 | 0.839971 | 1.151710e-57 | -8.615850e-47 |
| Msa0648760 | Msa0684750 | 0.833621 | 4.801401e-56 | -8.615850e-47 |
| Msa0653160 | Msa0684750 | 0.853398 | 2.453795e-61 | -8.615850e-47 |
| Msa0654740 | Msa0684750 | 0.809513 | 1.823039e-50 | -8.615850e-47 |
| Msa0657210 | Msa0684750 | 0.807514 | 4.870454e-50 | -8.615850e-47 |
| Msa0659200 | Msa0684750 | 0.836598 | 8.518472e-57 | -8.615850e-47 |
| Msa0663290 | Msa0684750 | 0.862594 | 4.537772e-64 | -8.615850e-47 |
| Msa0664070 | Msa0684750 | 0.873009 | 2.048821e-67 | -8.615850e-47 |
| Msa0684750 | Msa0688620 | 0.830968 | 2.178117e-55 | -8.615850e-47 |
| Msa0684750 | Msa0690320 | 0.838043 | 3.635026e-57 | -8.615850e-47 |
| Msa0684750 | Msa0691270 | 0.823580 | 1.283059e-53 | -8.615850e-47 |
| Msa0684750 | Msa0701250 | 0.817449 | 3.278052e-52 | -8.615850e-47 |
| Msa0684750 | Msa0705140 | 0.860111 | 2.593358e-63 | -8.615850e-47 |
| Msa0684750 | Msa0705180 | 0.845153 | 4.850269e-59 | -8.615850e-47 |
| Msa0684750 | Msa0707260 | 0.808328 | 3.268983e-50 | -8.615850e-47 |
| Msa0684750 | Msa0708980 | 0.832511 | 9.067962e-56 | -8.615850e-47 |
| Msa0684750 | Msa0717900 | 0.825287 | 5.089971e-54 | -8.615850e-47 |
| Msa0684750 | Msa0720280 | 0.859557 | 3.808091e-63 | -8.615850e-47 |
| Msa0684750 | Msa0737130 | 0.803549 | 3.306801e-49 | -8.615850e-47 |
| Msa0684750 | Msa0737140 | 0.822138 | 2.780071e-53 | -8.615850e-47 |
| Msa0684750 | Msa0749190 | 0.827613 | 1.420355e-54 | -8.615850e-47 |
| Msa0684750 | Msa0750520 | 0.831673 | 1.460770e-55 | -8.615850e-47 |
| Msa0684750 | Msa0751250 | 0.808849 | 2.530121e-50 | -8.615850e-47 |
| Msa0684750 | Msa0771910 | 0.806360 | 8.542864e-50 | -8.615850e-47 |
| Msa0684750 | Msa0803140 | 0.871149 | 8.517643e-67 | -8.615850e-47 |
| Msa0684750 | Msa0816080 | 0.825923 | 3.596942e-54 | -8.615850e-47 |
| Msa0684750 | Msa0816230 | 0.814810 | 1.274217e-51 | -8.615850e-47 |
| Msa0684750 | Msa0831820 | 0.821131 | 4.752649e-53 | -8.615850e-47 |
| Msa0684750 | Msa0837680 | 0.849902 | 2.399251e-60 | -8.615850e-47 |
| Msa0684750 | Msa0841500 | 0.886623 | 2.912126e-72 | -8.615850e-47 |
| Msa0684750 | Msa0846900 | 0.815207 | 1.040378e-51 | -8.615850e-47 |
| Msa0684750 | Msa0856610 | 0.872624 | 2.756494e-67 | -8.615850e-47 |
| Msa0684750 | Msa0861440 | 0.826544 | 2.559923e-54 | -8.615850e-47 |
| Msa0684750 | Msa0900090 | 0.820572 | 6.390172e-53 | -8.615850e-47 |
| Msa0684750 | Msa0926310 | 0.801008 | 1.102406e-48 | -8.615850e-47 |
| Msa0684750 | Msa0926760 | 0.836046 | 1.176744e-56 | -8.615850e-47 |
| Msa0684750 | Msa0929900 | 0.832113 | 1.137359e-55 | -8.615850e-47 |
| Msa0684750 | Msa0930040 | 0.812209 | 4.756834e-51 | -8.615850e-47 |
| Msa0684750 | Msa0965470 | 0.829090 | 6.252321e-55 | -8.615850e-47 |
| Msa0684750 | Msa0982960 | 0.823280 | 1.508276e-53 | -8.615850e-47 |
| Msa0684750 | Msa0999950 | 0.824994 | 5.970690e-54 | -8.615850e-47 |
| Msa0684750 | Msa1008670 | 0.826179 | 3.126395e-54 | -8.615850e-47 |
| Msa0684750 | Msa1021560 | 0.820074 | 8.310282e-53 | -8.615850e-47 |
| Msa0684750 | Msa1033420 | 0.823014 | 1.739794e-53 | -8.615850e-47 |
| Msa0684750 | Msa1033920 | 0.802746 | 4.845745e-49 | -8.615850e-47 |
| Msa0684750 | Msa1041370 | 0.830483 | 2.863291e-55 | -8.615850e-47 |
| Msa0684750 | Msa1060300 | 0.809730 | 1.637783e-50 | -8.615850e-47 |
| Msa0684750 | Msa1071410 | 0.831144 | 1.971432e-55 | -8.615850e-47 |
| Msa0684750 | Msa1073060 | 0.802041 | 6.770714e-49 | -8.615850e-47 |
| Msa0684750 | Msa1078860 | 0.817122 | 3.884797e-52 | -8.615850e-47 |
| Msa0684750 | Msa1078990 | 0.834776 | 2.465016e-56 | -8.615850e-47 |
| Msa0684750 | Msa1081270 | 0.823110 | 1.652340e-53 | -8.615850e-47 |
| Msa0684750 | Msa1082380 | 0.802725 | 4.894983e-49 | -8.615850e-47 |
| Msa0684750 | Msa1085680 | 0.855739 | 5.152795e-62 | -8.615850e-47 |
| Msa0684750 | Msa1098060 | 0.826396 | 2.776710e-54 | -8.615850e-47 |
| Msa0684750 | Msa1105540 | 0.830340 | 3.103438e-55 | -8.615850e-47 |
| Msa0684750 | Msa1105580 | 0.807278 | 5.465025e-50 | -8.615850e-47 |
| Msa0684750 | Msa1106220 | 0.840489 | 8.433492e-58 | -8.615850e-47 |
| Msa0684750 | Msa1144990 | 0.843719 | 1.178436e-58 | -8.615850e-47 |
| Msa0684750 | Msa1147560 | 0.838375 | 2.984804e-57 | -8.615850e-47 |
| Msa0684750 | Msa1148930 | 0.803337 | 3.657321e-49 | -8.615850e-47 |
| Msa0684750 | Msa1162360 | 0.831470 | 1.639130e-55 | -8.615850e-47 |
| Msa0684750 | Msa1162880 | 0.803315 | 3.696339e-49 | -8.615850e-47 |
| Msa0684750 | Msa1163180 | 0.809991 | 1.438997e-50 | -8.615850e-47 |
| Msa0684750 | Msa1169170 | 0.833876 | 4.145270e-56 | -8.615850e-47 |
| Msa0684750 | Msa1169690 | 0.815566 | 8.657957e-52 | -8.615850e-47 |
| Msa0684750 | Msa1191000 | 0.853363 | 2.511436e-61 | -8.615850e-47 |
| Msa0684750 | Msa1206040 | 0.806335 | 8.648436e-50 | -8.615850e-47 |
| Msa0684750 | Msa1215980 | 0.824957 | 6.090311e-54 | -8.615850e-47 |
| Msa0684750 | Msa1240940 | 0.827339 | 1.652381e-54 | -8.615850e-47 |
| Msa0684750 | Msa1244690 | 0.832247 | 1.053896e-55 | -8.615850e-47 |
| Msa0684750 | Msa1254420 | 0.825185 | 5.380938e-54 | -8.615850e-47 |
| Msa0684750 | Msa1263740 | 0.806302 | 8.788583e-50 | -8.615850e-47 |
| Msa0684750 | Msa1267930 | 0.816913 | 4.326537e-52 | -8.615850e-47 |
| Msa0684750 | Msa1282300 | 0.821943 | 3.086428e-53 | -8.615850e-47 |
| Msa0684750 | Msa1294790 | 0.846891 | 1.633225e-59 | -8.615850e-47 |
| Msa0684750 | Msa1297070 | 0.802998 | 4.299826e-49 | -8.615850e-47 |
| Msa0684750 | Msa1301820 | 0.819819 | 9.504818e-53 | -8.615850e-47 |
| Msa0684750 | Msa1301830 | 0.800996 | 1.108893e-48 | -8.615850e-47 |
| Msa0684750 | Msa1305920 | 0.804766 | 1.845482e-49 | -8.615850e-47 |
| Msa0684750 | Msa1328870 | 0.802923 | 4.456124e-49 | -8.615850e-47 |
| Msa0684750 | Msa1331650 | 0.811600 | 6.456171e-51 | -8.615850e-47 |
| Msa0684750 | Msa1339170 | 0.808465 | 3.056703e-50 | -8.615850e-47 |
| Msa0684750 | Msa1339230 | 0.857212 | 1.903652e-62 | -8.615850e-47 |
| Msa0684750 | Msa1361930 | 0.809898 | 1.507144e-50 | -8.615850e-47 |
| Msa0684750 | Msa1372030 | 0.823084 | 1.675195e-53 | -8.615850e-47 |
| Msa0684750 | Msa1381800 | 0.830339 | 3.104607e-55 | -8.615850e-47 |
| Msa0684750 | Msa1387500 | 0.808337 | 3.254969e-50 | -8.615850e-47 |
| Msa0684750 | Msa1389820 | 0.807011 | 6.226267e-50 | -8.615850e-47 |
| Msa0684750 | Msa1390210 | 0.831387 | 1.718293e-55 | -8.615850e-47 |
| Msa0684750 | Msa1393560 | 0.814535 | 1.466169e-51 | -8.615850e-47 |
| Msa0684750 | Msa1406720 | 0.814001 | 1.924306e-51 | -8.615850e-47 |
| Msa0684750 | Msa1410190 | 0.836201 | 1.074853e-56 | -8.615850e-47 |
| Msa0684750 | Msa1424370 | 0.850940 | 1.226807e-60 | -8.615850e-47 |
| Msa0684750 | Msa1424590 | 0.819515 | 1.115578e-52 | -8.615850e-47 |
| Msa0684750 | Msa1432520 | 0.800357 | 1.496720e-48 | -8.615850e-47 |
| Msa0125590 | Msa0684750 | 0.831908 | 1.278707e-55 | -8.615850e-47 |
| Msa0127340 | Msa0684750 | 0.854704 | 1.031209e-61 | -8.615850e-47 |
| Msa0153210 | Msa0684750 | 0.800455 | 1.429723e-48 | -8.615850e-47 |
| Msa0156090 | Msa0684750 | 0.803513 | 3.364011e-49 | -8.615850e-47 |
| Msa0168380 | Msa0684750 | 0.817620 | 3.000449e-52 | -8.615850e-47 |
| Msa0170070 | Msa0684750 | 0.821720 | 3.474908e-53 | -8.615850e-47 |
| Msa0184700 | Msa0684750 | 0.809402 | 1.926075e-50 | -8.615850e-47 |
| Msa0186180 | Msa0684750 | 0.855808 | 4.918686e-62 | -8.615850e-47 |
| Msa0186560 | Msa0684750 | 0.824684 | 7.063576e-54 | -8.615850e-47 |
| Msa0204970 | Msa0684750 | 0.860117 | 2.582056e-63 | -8.615850e-47 |
| Msa0225800 | Msa0684750 | 0.808650 | 2.790514e-50 | -8.615850e-47 |
| Msa0373170 | Msa0684750 | 0.836101 | 1.140049e-56 | -8.615850e-47 |
| Msa0383940 | Msa0684750 | 0.823828 | 1.122785e-53 | -8.615850e-47 |
| Msa0385730 | Msa0684750 | 0.824379 | 8.332572e-54 | -8.615850e-47 |
| Msa0388620 | Msa0684750 | 0.828695 | 7.794071e-55 | -8.615850e-47 |
| Msa0412130 | Msa0684750 | 0.802647 | 5.080946e-49 | -8.615850e-47 |
| Msa0415820 | Msa0684750 | 0.815906 | 7.271669e-52 | -8.615850e-47 |
| Msa0420430 | Msa0684750 | 0.842895 | 1.955355e-58 | -8.615850e-47 |
| Msa0421750 | Msa0684750 | 0.836380 | 9.683664e-57 | -8.615850e-47 |
| Msa0429970 | Msa0684750 | 0.818144 | 2.284211e-52 | -8.615850e-47 |
| Msa0433630 | Msa0684750 | 0.801793 | 7.615805e-49 | -8.615850e-47 |
| Msa0434360 | Msa0684750 | 0.815886 | 7.345960e-52 | -8.615850e-47 |
| Msa0461550 | Msa0684750 | 0.812382 | 4.360377e-51 | -8.615850e-47 |
| Msa0466520 | Msa0684750 | 0.824528 | 7.689311e-54 | -8.615850e-47 |
| Msa0467690 | Msa0684750 | 0.835898 | 1.283446e-56 | -8.615850e-47 |
| Msa0478140 | Msa0684750 | 0.827637 | 1.401788e-54 | -8.615850e-47 |
| Msa0478200 | Msa0684750 | 0.830357 | 3.073212e-55 | -8.615850e-47 |
| Msa0241040 | Msa0684750 | 0.832961 | 7.012570e-56 | -8.615850e-47 |
| Msa0249870 | Msa0684750 | 0.866812 | 2.168540e-65 | -8.615850e-47 |
| Msa0260570 | Msa0684750 | 0.829309 | 5.533795e-55 | -8.615850e-47 |
| Msa0260630 | Msa0684750 | 0.832438 | 9.453981e-56 | -8.615850e-47 |
| Msa0278840 | Msa0684750 | 0.832512 | 9.061445e-56 | -8.615850e-47 |
| Msa0281540 | Msa0684750 | 0.835134 | 2.002112e-56 | -8.615850e-47 |
| Msa0288400 | Msa0684750 | 0.800568 | 1.356052e-48 | -8.615850e-47 |
| Msa0320250 | Msa0684750 | 0.802464 | 5.540185e-49 | -8.615850e-47 |
| Msa0320270 | Msa0684750 | 0.803850 | 2.863231e-49 | -8.615850e-47 |
| Msa0320290 | Msa0684750 | 0.810251 | 1.264924e-50 | -8.615850e-47 |
| Msa0320580 | Msa0684750 | 0.835535 | 1.585661e-56 | -8.615850e-47 |
| Msa0344110 | Msa0684750 | 0.839526 | 1.503639e-57 | -8.615850e-47 |
| Msa0506880 | Msa0684750 | 0.824557 | 7.566996e-54 | -8.615850e-47 |
| Msa0507810 | Msa0684750 | 0.817227 | 3.678756e-52 | -8.615850e-47 |
| Msa0507820 | Msa0684750 | 0.814523 | 1.475472e-51 | -8.615850e-47 |
| Msa0507920 | Msa0684750 | 0.804346 | 2.257279e-49 | -8.615850e-47 |
| Msa0514020 | Msa0684750 | 0.838172 | 3.366834e-57 | -8.615850e-47 |
| Msa0522300 | Msa0684750 | 0.804800 | 1.815425e-49 | -8.615850e-47 |
| Msa0524320 | Msa0684750 | 0.813005 | 3.185305e-51 | -8.615850e-47 |
| Msa0524430 | Msa0684750 | 0.811207 | 7.858858e-51 | -8.615850e-47 |
| Msa0527850 | Msa0684750 | 0.859724 | 3.392656e-63 | -8.615850e-47 |
| Msa0541740 | Msa0684750 | 0.821060 | 4.934539e-53 | -8.615850e-47 |
| Msa0544410 | Msa0684750 | 0.825269 | 5.139560e-54 | -8.615850e-47 |
| Msa0554300 | Msa0684750 | 0.839907 | 1.196206e-57 | -8.615850e-47 |
| Msa0557850 | Msa0684750 | 0.814457 | 1.526138e-51 | -8.615850e-47 |
| Msa0560570 | Msa0684750 | 0.811777 | 5.908026e-51 | -8.615850e-47 |
| Msa0561560 | Msa0684750 | 0.818414 | 1.984444e-52 | -8.615850e-47 |
| Msa0572830 | Msa0684750 | 0.839647 | 1.398195e-57 | -8.615850e-47 |
| Msa0576330 | Msa0684750 | 0.856772 | 2.565893e-62 | -8.615850e-47 |
| Msa0582460 | Msa0684750 | 0.852203 | 5.385234e-61 | -8.615850e-47 |
| Msa0584530 | Msa0684750 | 0.801452 | 8.946053e-49 | -8.615850e-47 |
| Msa0586200 | Msa0684750 | 0.843765 | 1.145683e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684750 | MtrunA17_Chr5g0410931 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0684750 | MtrunA17_Chr5g0410951 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0684750 | MtrunA17_Chr8g0383851 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0684750 | MtrunA17_Chr8g0383781 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0684750 | MtrunA17_Chr8g0390361 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0684750 | MtrunA17_Chr2g0295191 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0684750 | MtrunA17_Chr7g0237661 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0684750 | MtrunA17_Chr4g0033041 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0684750 | MtrunA17_Chr7g0218971 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0684750 | MtrunA17_Chr4g0046301 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0684750 | MtrunA17_Chr8g0364801 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 3.79e-96 | 272 |
| Msa0684750 | MtrunA17_Chr4g0054161 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 2.60e-93 | 265 |
| Msa0684750 | MtrunA17_Chr8g0363741 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 2.60e-93 | 265 |
| Msa0684750 | MtrunA17_Chr1g0156021 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 2.60e-93 | 265 |
| Msa0684750 | MtrunA17_Chr4g0054151 | 97.059 | 136 | 4 | 0 | 1 | 136 | 4 | 139 | 2.61e-93 | 265 |
| Msa0684750 | MtrunA17_Chr8g0388121 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.09e-92 | 264 |
| Msa0684750 | MtrunA17_Chr2g0319141 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.10e-86 | 248 |
| Msa0684750 | MtrunA17_Chr2g0319151 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.10e-86 | 248 |
| Msa0684750 | MtrunA17_Chr2g0319131 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.38e-82 | 238 |
| Msa0684750 | MtrunA17_Chr2g0319121 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 5.82e-75 | 219 |
| Msa0684750 | MtrunA17_Chr7g0218961 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 8.01e-66 | 195 |
| Msa0684750 | MtrunA17_Chr7g0222991 | 67.164 | 134 | 43 | 1 | 1 | 134 | 10 | 142 | 5.47e-56 | 171 |
| Msa0684750 | MtrunA17_Chr5g0407311 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.29e-45 | 144 |
| Msa0684750 | MtrunA17_Chr7g0223001 | 58.647 | 133 | 41 | 3 | 3 | 134 | 27 | 146 | 5.46e-43 | 139 |
| Msa0684750 | MtrunA17_Chr7g0240791 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 9.61e-41 | 133 |
| Msa0684750 | MtrunA17_Chr8g0347231 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 3.80e-30 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684750 | AT1G09200.1 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.62e-95 | 271 |
| Msa0684750 | AT5G65360.1 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.62e-95 | 271 |
| Msa0684750 | AT5G10390.1 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.62e-95 | 271 |
| Msa0684750 | AT5G10400.1 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.62e-95 | 271 |
| Msa0684750 | AT3G27360.1 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.62e-95 | 271 |
| Msa0684750 | AT4G40030.3 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.59e-93 | 265 |
| Msa0684750 | AT4G40030.1 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.59e-93 | 265 |
| Msa0684750 | AT4G40030.4 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.59e-93 | 265 |
| Msa0684750 | AT5G10980.1 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.59e-93 | 265 |
| Msa0684750 | AT4G40040.2 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.59e-93 | 265 |
| Msa0684750 | AT4G40040.3 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.59e-93 | 265 |
| Msa0684750 | AT4G40040.1 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.59e-93 | 265 |
| Msa0684750 | AT4G40030.2 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 7.05e-93 | 266 |
| Msa0684750 | AT5G65350.1 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.30e-91 | 260 |
| Msa0684750 | AT1G75600.1 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.25e-89 | 256 |
| Msa0684750 | AT1G13370.1 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.55e-89 | 254 |
| Msa0684750 | AT1G19890.1 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.07e-83 | 241 |
| Msa0684750 | AT5G12910.1 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.90e-67 | 198 |
| Msa0684750 | AT1G01370.2 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.97e-31 | 110 |
| Msa0684750 | AT1G01370.1 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.97e-31 | 110 |
| Msa0684750 | AT1G01370.4 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.97e-31 | 110 |
| Msa0684750 | AT1G01370.3 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.97e-31 | 110 |
Find 32 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGCAAGCTGAATATCTT+TGG | 0.249802 | 4_4:-48386078 | None:intergenic |
| TTCACGGAGTGCGACGGTTC+CGG | 0.309270 | 4_4:-48385844 | None:intergenic |
| TCACGGAGTGCGACGGTTCC+GGG | 0.327175 | 4_4:-48385843 | None:intergenic |
| TTCTTCACTCCGCCGGTGGC+TGG | 0.345560 | 4_4:-48385804 | None:intergenic |
| CTTGCAAGCTGAATATCTTT+GGG | 0.357406 | 4_4:-48386077 | None:intergenic |
| GGTGGCTGGAGCGGATTTGC+GGG | 0.370843 | 4_4:-48385790 | None:intergenic |
| CACGAACGAGACGTTGGAAT+GGG | 0.414135 | 4_4:-48385911 | None:intergenic |
| GAGCAGAAACAGCGCTACTC+TGG | 0.427137 | 4_4:-48385968 | None:intergenic |
| CGCAAATCCGCTCCAGCCAC+CGG | 0.436359 | 4_4:+48385792 | Msa0684750:CDS |
| TTTGGTATTTGCGGATTTCA+CGG | 0.451483 | 4_4:-48385860 | None:intergenic |
| CACTCCGCCGGTGGCTGGAG+CGG | 0.457833 | 4_4:-48385799 | None:intergenic |
| CGGTGGCTGGAGCGGATTTG+CGG | 0.465165 | 4_4:-48385791 | None:intergenic |
| TCACGAACGAGACGTTGGAA+TGG | 0.487442 | 4_4:-48385912 | None:intergenic |
| GCTGCTGAAGCTTATCTCGT+TGG | 0.507565 | 4_4:+48385999 | Msa0684750:CDS |
| AGCATGAATAGCGCAAAGAT+TGG | 0.509783 | 4_4:-48386036 | None:intergenic |
| CGACGGTTCCGGGACGGAAA+CGG | 0.513929 | 4_4:-48385833 | None:intergenic |
| AAGCCTCACCGTTTCCGTCC+CGG | 0.527320 | 4_4:+48385825 | Msa0684750:CDS |
| TCGGGGAGCTTTGCCGCCGG+TGG | 0.528357 | 4_4:-48385745 | None:intergenic |
| AAACAGCGCTACTCTGGAAA+CGG | 0.532210 | 4_4:-48385962 | None:intergenic |
| GCTACTCTGGAAACGGAGAT+CGG | 0.538527 | 4_4:-48385955 | None:intergenic |
| CGATTTCACGAACGAGACGT+TGG | 0.545134 | 4_4:-48385917 | None:intergenic |
| GTGAGGCTTCTTCACTCCGC+CGG | 0.560763 | 4_4:-48385811 | None:intergenic |
| GGCTGGAGCGGATTTGCGGG+CGG | 0.566126 | 4_4:-48385787 | None:intergenic |
| TCTCGTTCGTGAAATCGCTC+AGG | 0.574609 | 4_4:+48385923 | Msa0684750:CDS |
| AGGCTTCTTCACTCCGCCGG+TGG | 0.575034 | 4_4:-48385808 | None:intergenic |
| CAAACAGCTCGCAAATCCAC+CGG | 0.575165 | 4_4:+48385729 | Msa0684750:CDS |
| GCGGATTTCACGGAGTGCGA+CGG | 0.595387 | 4_4:-48385850 | None:intergenic |
| GGAGTGCGACGGTTCCGGGA+CGG | 0.649162 | 4_4:-48385839 | None:intergenic |
| AAATCCGCTCCAGCCACCGG+CGG | 0.651593 | 4_4:+48385795 | Msa0684750:CDS |
| CAGCTTGCAAGAAGAATCAG+AGG | 0.660238 | 4_4:+48386089 | Msa0684750:CDS |
| ACAGCTCGCAAATCCACCGG+CGG | 0.668402 | 4_4:+48385732 | Msa0684750:CDS |
| GTTCCGGGACGGAAACGGTG+AGG | 0.691461 | 4_4:-48385828 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TTTGGTATTTGCGGATTTCA+CGG | - | chr4_4:48385863-48385882 | None:intergenic | 35.0% | |
| !!! | CTGTGCTTTTTTGGTATTTG+CGG | - | chr4_4:48385872-48385891 | None:intergenic | 35.0% |
| CTTGCAAGCTGAATATCTTT+GGG | - | chr4_4:48386080-48386099 | None:intergenic | 35.0% | |
| TCTTGCAAGCTGAATATCTT+TGG | - | chr4_4:48386081-48386100 | None:intergenic | 35.0% | |
| !! | TTTTGTGGCGAGTTGTTTTC+GGG | - | chr4_4:48385766-48385785 | None:intergenic | 40.0% |
| !! | CTTTTGTGGCGAGTTGTTTT+CGG | - | chr4_4:48385767-48385786 | None:intergenic | 40.0% |
| !!! | TGAGAAGCTCTGTGCTTTTT+TGG | - | chr4_4:48385881-48385900 | None:intergenic | 40.0% |
| AGCATGAATAGCGCAAAGAT+TGG | - | chr4_4:48386039-48386058 | None:intergenic | 40.0% | |
| !! | TTTGTGGCGAGTTGTTTTCG+GGG | - | chr4_4:48385765-48385784 | None:intergenic | 45.0% |
| ! | GACGTTGGAATGGGAGTTTT+CGG | - | chr4_4:48385905-48385924 | None:intergenic | 45.0% |
| ! | AAACAGCGCTACTCTGGAAA+CGG | - | chr4_4:48385965-48385984 | None:intergenic | 45.0% |
| CAGCTTGCAAGAAGAATCAG+AGG | + | chr4_4:48386089-48386108 | Msa0684750:CDS | 45.0% | |
| CAAACAGCTCGCAAATCCAC+CGG | + | chr4_4:48385729-48385748 | Msa0684750:CDS | 50.0% | |
| CACGAACGAGACGTTGGAAT+GGG | - | chr4_4:48385914-48385933 | None:intergenic | 50.0% | |
| TCACGAACGAGACGTTGGAA+TGG | - | chr4_4:48385915-48385934 | None:intergenic | 50.0% | |
| CGATTTCACGAACGAGACGT+TGG | - | chr4_4:48385920-48385939 | None:intergenic | 50.0% | |
| TCTCGTTCGTGAAATCGCTC+AGG | + | chr4_4:48385923-48385942 | Msa0684750:CDS | 50.0% | |
| ! | GCTACTCTGGAAACGGAGAT+CGG | - | chr4_4:48385958-48385977 | None:intergenic | 50.0% |
| GCTGCTGAAGCTTATCTCGT+TGG | + | chr4_4:48385999-48386018 | Msa0684750:CDS | 50.0% | |
| GAGCAGAAACAGCGCTACTC+TGG | - | chr4_4:48385971-48385990 | None:intergenic | 55.0% | |
| ACAGCTCGCAAATCCACCGG+CGG | + | chr4_4:48385732-48385751 | Msa0684750:CDS | 60.0% | |
| !! | TTTTCGGGGAGCTTTGCCGC+CGG | - | chr4_4:48385751-48385770 | None:intergenic | 60.0% |
| ! | GGATTTGCGGGCGGCTTTTG+TGG | - | chr4_4:48385781-48385800 | None:intergenic | 60.0% |
| GTGAGGCTTCTTCACTCCGC+CGG | - | chr4_4:48385814-48385833 | None:intergenic | 60.0% | |
| AAGCCTCACCGTTTCCGTCC+CGG | + | chr4_4:48385825-48385844 | Msa0684750:CDS | 60.0% | |
| TTCACGGAGTGCGACGGTTC+CGG | - | chr4_4:48385847-48385866 | None:intergenic | 60.0% | |
| GCGGATTTCACGGAGTGCGA+CGG | - | chr4_4:48385853-48385872 | None:intergenic | 60.0% | |
| ! | GGTGGCTGGAGCGGATTTGC+GGG | - | chr4_4:48385793-48385812 | None:intergenic | 65.0% |
| ! | CGGTGGCTGGAGCGGATTTG+CGG | - | chr4_4:48385794-48385813 | None:intergenic | 65.0% |
| CGCAAATCCGCTCCAGCCAC+CGG | + | chr4_4:48385792-48385811 | Msa0684750:CDS | 65.0% | |
| AAATCCGCTCCAGCCACCGG+CGG | + | chr4_4:48385795-48385814 | Msa0684750:CDS | 65.0% | |
| TTCTTCACTCCGCCGGTGGC+TGG | - | chr4_4:48385807-48385826 | None:intergenic | 65.0% | |
| AGGCTTCTTCACTCCGCCGG+TGG | - | chr4_4:48385811-48385830 | None:intergenic | 65.0% | |
| GTTCCGGGACGGAAACGGTG+AGG | - | chr4_4:48385831-48385850 | None:intergenic | 65.0% | |
| CGACGGTTCCGGGACGGAAA+CGG | - | chr4_4:48385836-48385855 | None:intergenic | 65.0% | |
| TCACGGAGTGCGACGGTTCC+GGG | - | chr4_4:48385846-48385865 | None:intergenic | 65.0% | |
| ! | GGCTGGAGCGGATTTGCGGG+CGG | - | chr4_4:48385790-48385809 | None:intergenic | 70.0% |
| GGAGTGCGACGGTTCCGGGA+CGG | - | chr4_4:48385842-48385861 | None:intergenic | 70.0% | |
| TCGGGGAGCTTTGCCGCCGG+TGG | - | chr4_4:48385748-48385767 | None:intergenic | 75.0% | |
| CACTCCGCCGGTGGCTGGAG+CGG | - | chr4_4:48385802-48385821 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 48385714 | 48386124 | 48385714 | ID=Msa0684750;Name=Msa0684750 |
| chr4_4 | mRNA | 48385714 | 48386124 | 48385714 | ID=Msa0684750-mRNA-1;Parent=Msa0684750;Name=Msa0684750-mRNA-1;_AED=0.41;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|136 |
| chr4_4 | exon | 48385714 | 48386124 | 48385714 | ID=Msa0684750-mRNA-1:exon:12008;Parent=Msa0684750-mRNA-1 |
| chr4_4 | CDS | 48385714 | 48386124 | 48385714 | ID=Msa0684750-mRNA-1:cds;Parent=Msa0684750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
