AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090590 MtrunA17_Chr1g0210591 97.315 298 8 0 1 298 1 298 0.0 602
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090590 AT2G25100.1 71.141 298 84 2 1 298 1 296 2.41e-165 461
Msa0090590 AT2G25100.2 66.107 298 80 3 1 298 1 277 1.98e-148 417

Find 89 sgRNAs with CRISPR-Local

Find 550 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATTGAAATTAAACAATT+TGG 0.119349 1_2:+72666006 Msa0090590:CDS
CTGCCATGGGCCTCGTTGAT+AGG 0.233916 1_2:+72663753 Msa0090590:CDS
TGTTTACTTCTTGAGCATTT+TGG 0.237684 1_2:-72663604 None:intergenic
TTGAAAGCCAATGATTCTAT+TGG 0.257884 1_2:+72663543 Msa0090590:CDS
CGTTGATAGGGTGCTCAAAA+TGG 0.268094 1_2:+72663766 Msa0090590:CDS
GATCACAAACATTCTATCTT+TGG 0.271558 1_2:+72664444 Msa0090590:CDS
GCAACCACAAATTTGATAGA+TGG 0.310246 1_2:-72664074 None:intergenic
TATTTCTTCGCTTCTCCTCT+TGG 0.315790 1_2:-72666041 None:intergenic
GGTTGTTTGTTGAGCGGAAA+TGG 0.317889 1_2:+72662430 Msa0090590:intron
CAATTGAAATTAAACAATTT+GGG 0.333217 1_2:+72666007 Msa0090590:CDS
CAAGTGGTAAAGGGCGTTCT+AGG 0.341183 1_2:+72666068 Msa0090590:CDS
AACATTAGTCAGGTTTAGTT+GGG 0.344847 1_2:+72664473 Msa0090590:CDS
GGCATCGGAGGCTTGCATAA+TGG 0.349327 1_2:+72662481 Msa0090590:CDS
GTCCTTGGTCCTATGGTCTA+TGG 0.350982 1_2:+72662530 Msa0090590:CDS
CAAATTTGTGGTTGCAAAGA+AGG 0.351422 1_2:+72664082 Msa0090590:CDS
TCTAGCCAAGACTTGGTTGC+AGG 0.363522 1_2:-72664420 None:intergenic
ACTCAATACTAGTGCACATT+TGG 0.366678 1_2:-72666261 None:intergenic
CAAGCCTCCGATGCCCATTC+CGG 0.377392 1_2:-72662473 None:intergenic
ATCTGAAGCTGGTATGGTTC+CGG 0.384182 1_2:+72662454 Msa0090590:CDS
GCATCGGAGGCTTGCATAAT+GGG 0.384725 1_2:+72662482 Msa0090590:CDS
CCTCTGCTCTGATGTTAGTT+AGG 0.389608 1_2:-72662337 None:intergenic
CAACATTAGTCAGGTTTAGT+TGG 0.397868 1_2:+72664472 Msa0090590:CDS
ATAATGCAAAGACAACAATT+AGG 0.398457 1_2:-72666141 None:intergenic
ATTGATACAGTTGGAGATCC+AGG 0.399985 1_2:+72664020 Msa0090590:CDS
AGCTGGTATGGTTCCGGAAT+GGG 0.405216 1_2:+72662460 Msa0090590:CDS
GGTGGCAGCAATAATAATAA+TGG 0.411127 1_2:+72665977 Msa0090590:CDS
GATAACATTCACAGGAACTT+TGG 0.418465 1_2:+72664279 Msa0090590:CDS
GTTGTTTGTTGAGCGGAAAT+GGG 0.420679 1_2:+72662431 Msa0090590:intron
CAACTAAACCTGACTAATGT+TGG 0.422536 1_2:-72664471 None:intergenic
AGGTCCTGTCCTTGGTCCTA+TGG 0.426005 1_2:+72662523 Msa0090590:CDS
GAGATCGAGCTATAAGAGAT+TGG 0.427593 1_2:+72664238 Msa0090590:CDS
AGCCCATCCAATAGAATCAT+TGG 0.430568 1_2:-72663550 None:intergenic
GAAATAGAATCAAGTGGTAA+AGG 0.437381 1_2:+72666058 Msa0090590:CDS
CAGGTTTATATTGATACAGT+TGG 0.452563 1_2:+72664011 Msa0090590:intron
TTCGCTTCTCCTCTTGGATG+TGG 0.454880 1_2:-72666035 None:intergenic
AAGGTGGCACTGAAGTCTTA+TGG 0.459123 1_2:+72664517 Msa0090590:CDS
ATCAGAGCAGAGGGTTGAAA+TGG 0.462792 1_2:+72662347 Msa0090590:five_prime_UTR
GTGATCTTCTAGCCAAGACT+TGG 0.469330 1_2:-72664427 None:intergenic
AAATAGAATCAAGTGGTAAA+GGG 0.471476 1_2:+72666059 Msa0090590:CDS
TGCCATGGGCCTCGTTGATA+GGG 0.471507 1_2:+72663754 Msa0090590:CDS
GTTGATAGGGTGCTCAAAAT+GGG 0.472159 1_2:+72663767 Msa0090590:CDS
AATACTAGTGCACATTTGGT+TGG 0.473640 1_2:-72666257 None:intergenic
ATACTTGCACCACTGACAAC+AGG 0.477284 1_2:-72664119 None:intergenic
AACTTTGGCTCTGGATATCC+CGG 0.481184 1_2:+72664294 Msa0090590:CDS
TAGTGCACATTTGGTTGGAC+TGG 0.482557 1_2:-72666252 None:intergenic
GCTGGAAGAGGTCCTGTCCT+TGG 0.487213 1_2:+72662515 Msa0090590:CDS
AGCTTCGCTTCATATTTCCC+TGG 0.499923 1_2:-72664038 None:intergenic
ATTCACAGGAACTTTGGCTC+TGG 0.501553 1_2:+72664285 Msa0090590:CDS
AGATCGAGCTATAAGAGATT+GGG 0.506461 1_2:+72664239 Msa0090590:CDS
AATGGGATCTGAAGCTGGTA+TGG 0.510572 1_2:+72662448 Msa0090590:exon
TCTGAATGAAGTGATCGAAT+TGG 0.513203 1_2:+72666335 Msa0090590:three_prime_UTR
GACACTAAAAGAAGAGAAGA+GGG 0.517003 1_2:+72663503 Msa0090590:CDS
GAGCAGAGGGTTGAAATGGC+GGG 0.522530 1_2:+72662351 Msa0090590:five_prime_UTR
TAGATCCTGCAACCAAGTCT+TGG 0.525753 1_2:+72664415 Msa0090590:intron
AAGCCAATGATTCTATTGGA+TGG 0.528501 1_2:+72663547 Msa0090590:CDS
TGCGAAACTCAAAGTAGCTA+AGG 0.529377 1_2:-72662585 None:intergenic
AAGCTGGTATGGTTCCGGAA+TGG 0.529747 1_2:+72662459 Msa0090590:CDS
TATGGTTCCGGAATGGGCAT+CGG 0.530630 1_2:+72662466 Msa0090590:CDS
GAAATGGCGGGAAGTTGAAA+AGG 0.541653 1_2:+72662363 Msa0090590:five_prime_UTR
GCGGAAATGGGATCTGAAGC+TGG 0.548358 1_2:+72662443 Msa0090590:exon
TTAGCTACTTTGAGTTTCGC+AGG 0.563355 1_2:+72662587 Msa0090590:CDS
CCTAACTAACATCAGAGCAG+AGG 0.569044 1_2:+72662337 Msa0090590:five_prime_UTR
GGAATCGACGAAGCTGGAAG+AGG 0.571188 1_2:+72662503 Msa0090590:CDS
AGTCTGCTGATAACATTCAC+AGG 0.575679 1_2:+72664271 Msa0090590:CDS
AGACACTAAAAGAAGAGAAG+AGG 0.576756 1_2:+72663502 Msa0090590:CDS
TGGTGCAAGTATAGTTGCAA+AGG 0.593002 1_2:+72664130 Msa0090590:CDS
GGTTCCGGAATGGGCATCGG+AGG 0.593246 1_2:+72662469 Msa0090590:CDS
AGAGCAGAGGGTTGAAATGG+CGG 0.596712 1_2:+72662350 Msa0090590:five_prime_UTR
TTGATACAGTTGGAGATCCA+GGG 0.597039 1_2:+72664021 Msa0090590:CDS
CACCCTATCAACGAGGCCCA+TGG 0.597149 1_2:-72663756 None:intergenic
AGCCAATGATTCTATTGGAT+GGG 0.597314 1_2:+72663548 Msa0090590:CDS
GATATCACATGACTCTGCCA+TGG 0.604388 1_2:+72663739 Msa0090590:CDS
AGTGCACATTTGGTTGGACT+GGG 0.605393 1_2:-72666251 None:intergenic
TATAAACAACCATAGACCAT+AGG 0.606448 1_2:-72662539 None:intergenic
AGTCTTTATCCTGTTGTCAG+TGG 0.607604 1_2:+72664110 Msa0090590:CDS
TGTTGATGTCATTGACCCAA+AGG 0.610587 1_2:+72663572 Msa0090590:CDS
CTAACTAACATCAGAGCAGA+GGG 0.611974 1_2:+72662338 Msa0090590:five_prime_UTR
ATATCACATGACTCTGCCAT+GGG 0.613919 1_2:+72663740 Msa0090590:CDS
ACATTAGTCAGGTTTAGTTG+GGG 0.616439 1_2:+72664474 Msa0090590:CDS
GCAATAATAATAATGGCAAG+AGG 0.617191 1_2:+72665984 Msa0090590:CDS
GAGTCTGACTTGGATGAAGA+TGG 0.620122 1_2:+72665956 Msa0090590:CDS
AGCGAAGAAATAGAATCAAG+TGG 0.622154 1_2:+72666052 Msa0090590:CDS
ATAATGGGAATCGACGAAGC+TGG 0.629515 1_2:+72662497 Msa0090590:CDS
TAGACCATAGGACCAAGGAC+AGG 0.637946 1_2:-72662527 None:intergenic
TCACTTCATTCAGATGTCCA+AGG 0.642202 1_2:-72666326 None:intergenic
TGGGTTTCACCACATCCAAG+AGG 0.671053 1_2:+72666026 Msa0090590:CDS
AACCATAGACCATAGGACCA+AGG 0.685457 1_2:-72662532 None:intergenic
TTTGGCTCTGGATATCCCGG+AGG 0.726118 1_2:+72664297 Msa0090590:CDS
TCTGACTTGGATGAAGATGG+TGG 0.731629 1_2:+72665959 Msa0090590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAGAATTATAATTAAAAA+TGG - chr1_2:72662684-72662703 None:intergenic 10.0%
!! TTCTAATTAAAATTGAAAAT+AGG + chr1_2:72664772-72664791 Msa0090590:intron 10.0%
!!! TATTTGAAATTTTAGAATTT+TGG + chr1_2:72666180-72666199 Msa0090590:three_prime_UTR 10.0%
!! ACAAGAATTATAATTAAAAA+TGG - chr1_2:72662684-72662703 None:intergenic 10.0%
!! TTCTAATTAAAATTGAAAAT+AGG + chr1_2:72664772-72664791 Msa0090590:intron 10.0%
!!! TATTTGAAATTTTAGAATTT+TGG + chr1_2:72666180-72666199 Msa0090590:three_prime_UTR 10.0%
!!! CATTTTAGTTACAATAAATA+TGG + chr1_2:72664375-72664394 Msa0090590:intron 15.0%
!!! AGAAAAGTATATTAATTTTC+AGG + chr1_2:72665361-72665380 Msa0090590:intron 15.0%
!! ATTAAATTCCATTATGTATA+TGG + chr1_2:72665833-72665852 Msa0090590:intron 15.0%
!! TTAAATTCCATTATGTATAT+GGG + chr1_2:72665834-72665853 Msa0090590:intron 15.0%
!! CAATTGAAATTAAACAATTT+GGG + chr1_2:72666007-72666026 Msa0090590:CDS 15.0%
!!! CATTTTAGTTACAATAAATA+TGG + chr1_2:72664375-72664394 Msa0090590:intron 15.0%
!!! AGAAAAGTATATTAATTTTC+AGG + chr1_2:72665361-72665380 Msa0090590:intron 15.0%
!! ATTAAATTCCATTATGTATA+TGG + chr1_2:72665833-72665852 Msa0090590:intron 15.0%
!! TTAAATTCCATTATGTATAT+GGG + chr1_2:72665834-72665853 Msa0090590:intron 15.0%
!! CAATTGAAATTAAACAATTT+GGG + chr1_2:72666007-72666026 Msa0090590:CDS 15.0%
!! CTACTATCATTAATTCATTA+TGG - chr1_2:72663399-72663418 None:intergenic 20.0%
!! AAAAAAAAAGCAAAACCAAA+AGG - chr1_2:72663643-72663662 None:intergenic 20.0%
!!! CTTTCTTTTCAATTTAATGA+TGG + chr1_2:72663670-72663689 Msa0090590:intron 20.0%
!!! TTTTCCCAACATATTTTAAT+GGG + chr1_2:72663813-72663832 Msa0090590:intron 20.0%
!! AGATGTGAAATGTATAATTT+GGG + chr1_2:72663983-72664002 Msa0090590:intron 20.0%
!!! CAATAAATATGGTTATGTTT+TGG + chr1_2:72664386-72664405 Msa0090590:intron 20.0%
!!! TTGATTTGATATTGTTATTC+TGG - chr1_2:72665135-72665154 None:intergenic 20.0%
!!! TTATTTGAAACTTTTGTTTC+TGG + chr1_2:72665239-72665258 Msa0090590:intron 20.0%
!!! TATTTGAAACTTTTGTTTCT+GGG + chr1_2:72665240-72665259 Msa0090590:intron 20.0%
!! TCATTTGATAAGTATTAAGT+AGG + chr1_2:72665576-72665595 Msa0090590:intron 20.0%
!! ATGAGAAATATATTGTTTGT+GGG - chr1_2:72665796-72665815 None:intergenic 20.0%
!! TAAATTCCATTATGTATATG+GGG + chr1_2:72665835-72665854 Msa0090590:intron 20.0%
!! CTTATTTATCTGTTAAAACT+TGG + chr1_2:72665920-72665939 Msa0090590:intron 20.0%
!!! TAAAACTTGGACTTTTTTAT+AGG + chr1_2:72665933-72665952 Msa0090590:intron 20.0%
!!! AAAACTTGGACTTTTTTATA+GGG + chr1_2:72665934-72665953 Msa0090590:intron 20.0%
!! GCAATTGAAATTAAACAATT+TGG + chr1_2:72666006-72666025 Msa0090590:CDS 20.0%
!! CTACTATCATTAATTCATTA+TGG - chr1_2:72663399-72663418 None:intergenic 20.0%
!! AAAAAAAAAGCAAAACCAAA+AGG - chr1_2:72663643-72663662 None:intergenic 20.0%
!!! CTTTCTTTTCAATTTAATGA+TGG + chr1_2:72663670-72663689 Msa0090590:intron 20.0%
!!! TTTTCCCAACATATTTTAAT+GGG + chr1_2:72663813-72663832 Msa0090590:intron 20.0%
!! AGATGTGAAATGTATAATTT+GGG + chr1_2:72663983-72664002 Msa0090590:intron 20.0%
!!! CAATAAATATGGTTATGTTT+TGG + chr1_2:72664386-72664405 Msa0090590:intron 20.0%
!!! TTGATTTGATATTGTTATTC+TGG - chr1_2:72665135-72665154 None:intergenic 20.0%
!!! TTATTTGAAACTTTTGTTTC+TGG + chr1_2:72665239-72665258 Msa0090590:intron 20.0%
!!! TATTTGAAACTTTTGTTTCT+GGG + chr1_2:72665240-72665259 Msa0090590:intron 20.0%
!! TCATTTGATAAGTATTAAGT+AGG + chr1_2:72665576-72665595 Msa0090590:intron 20.0%
!! ATGAGAAATATATTGTTTGT+GGG - chr1_2:72665796-72665815 None:intergenic 20.0%
!! TAAATTCCATTATGTATATG+GGG + chr1_2:72665835-72665854 Msa0090590:intron 20.0%
!! CTTATTTATCTGTTAAAACT+TGG + chr1_2:72665920-72665939 Msa0090590:intron 20.0%
!!! TAAAACTTGGACTTTTTTAT+AGG + chr1_2:72665933-72665952 Msa0090590:intron 20.0%
!!! AAAACTTGGACTTTTTTATA+GGG + chr1_2:72665934-72665953 Msa0090590:intron 20.0%
!! GCAATTGAAATTAAACAATT+TGG + chr1_2:72666006-72666025 Msa0090590:CDS 20.0%
! TAATTAAAAATGGAAAGCTC+TGG - chr1_2:72662674-72662693 None:intergenic 25.0%
! TAAACCATCAAATTCAATCT+GGG + chr1_2:72662815-72662834 Msa0090590:intron 25.0%
!! AAAGTACTACTCAAGTTTAA+GGG + chr1_2:72662880-72662899 Msa0090590:intron 25.0%
!! TGATATATGATAGAGCATTA+TGG + chr1_2:72663258-72663277 Msa0090590:intron 25.0%
!!! TTCCTTGTTGTAATTTTAAC+AGG + chr1_2:72663696-72663715 Msa0090590:intron 25.0%
! TTCCTGTTAAAATTACAACA+AGG - chr1_2:72663701-72663720 None:intergenic 25.0%
! CATTAAAATATGTTGGGAAA+AGG - chr1_2:72663814-72663833 None:intergenic 25.0%
!!! CTTTTCCCAACATATTTTAA+TGG + chr1_2:72663812-72663831 Msa0090590:intron 25.0%
! TCTTCCCATTAAAATATGTT+GGG - chr1_2:72663820-72663839 None:intergenic 25.0%
! TTCTTCCCATTAAAATATGT+TGG - chr1_2:72663821-72663840 None:intergenic 25.0%
! GAGATGTGAAATGTATAATT+TGG + chr1_2:72663982-72664001 Msa0090590:intron 25.0%
!! TTTTCCATCTATCAAATTTG+TGG + chr1_2:72664070-72664089 Msa0090590:CDS 25.0%
!!! TTGTTTTCTAAGGATTTGTT+TGG + chr1_2:72664589-72664608 Msa0090590:intron 25.0%
!!! GTTTGGTTTCATAACATTTT+CGG + chr1_2:72664606-72664625 Msa0090590:intron 25.0%
!!! TTTGGTTTCATAACATTTTC+GGG + chr1_2:72664607-72664626 Msa0090590:intron 25.0%
! AAAACAAACTCAAAATAAGG+TGG - chr1_2:72664664-72664683 None:intergenic 25.0%
! CTGAAAACAAACTCAAAATA+AGG - chr1_2:72664667-72664686 None:intergenic 25.0%
!! TCAGTTTTCAAAACATTTTC+TGG + chr1_2:72664683-72664702 Msa0090590:intron 25.0%
!! TTTTTCACTTCCTTAGTTTA+CGG + chr1_2:72665089-72665108 Msa0090590:intron 25.0%
! ATTCCAAAAATTACAAACGT+GGG - chr1_2:72665165-72665184 None:intergenic 25.0%
! AATTCCAAAAATTACAAACG+TGG - chr1_2:72665166-72665185 None:intergenic 25.0%
!! ATGATTCTAGTTACTTAAGT+GGG - chr1_2:72665337-72665356 None:intergenic 25.0%
!! AATGATTCTAGTTACTTAAG+TGG - chr1_2:72665338-72665357 None:intergenic 25.0%
! CTATAACATATCAACTATCA+AGG - chr1_2:72665444-72665463 None:intergenic 25.0%
!! CTTGATAGTTGATATGTTAT+AGG + chr1_2:72665442-72665461 Msa0090590:intron 25.0%
! TGAGAAATATATTGTTTGTG+GGG - chr1_2:72665795-72665814 None:intergenic 25.0%
! CATGAGAAATATATTGTTTG+TGG - chr1_2:72665797-72665816 None:intergenic 25.0%
! ATATTTCTCATGAAAGATGA+AGG + chr1_2:72665805-72665824 Msa0090590:intron 25.0%
! TAACACTTGGAACATAAAAA+TGG - chr1_2:72665883-72665902 None:intergenic 25.0%
! AAATAGAATCAAGTGGTAAA+GGG + chr1_2:72666059-72666078 Msa0090590:CDS 25.0%
!!! ATCATTTTTAGAAATGAGTG+AGG - chr1_2:72666120-72666139 None:intergenic 25.0%
! ATAATGCAAAGACAACAATT+AGG - chr1_2:72666144-72666163 None:intergenic 25.0%
!!! TGTTGAATTTTAATTCACCT+TGG + chr1_2:72666309-72666328 Msa0090590:three_prime_UTR 25.0%
! TAATTAAAAATGGAAAGCTC+TGG - chr1_2:72662674-72662693 None:intergenic 25.0%
! TAAACCATCAAATTCAATCT+GGG + chr1_2:72662815-72662834 Msa0090590:intron 25.0%
!! AAAGTACTACTCAAGTTTAA+GGG + chr1_2:72662880-72662899 Msa0090590:intron 25.0%
!! TGATATATGATAGAGCATTA+TGG + chr1_2:72663258-72663277 Msa0090590:intron 25.0%
!!! TTCCTTGTTGTAATTTTAAC+AGG + chr1_2:72663696-72663715 Msa0090590:intron 25.0%
! TTCCTGTTAAAATTACAACA+AGG - chr1_2:72663701-72663720 None:intergenic 25.0%
! CATTAAAATATGTTGGGAAA+AGG - chr1_2:72663814-72663833 None:intergenic 25.0%
!!! CTTTTCCCAACATATTTTAA+TGG + chr1_2:72663812-72663831 Msa0090590:intron 25.0%
! TCTTCCCATTAAAATATGTT+GGG - chr1_2:72663820-72663839 None:intergenic 25.0%
! TTCTTCCCATTAAAATATGT+TGG - chr1_2:72663821-72663840 None:intergenic 25.0%
! GAGATGTGAAATGTATAATT+TGG + chr1_2:72663982-72664001 Msa0090590:intron 25.0%
!! TTTTCCATCTATCAAATTTG+TGG + chr1_2:72664070-72664089 Msa0090590:CDS 25.0%
!!! TTGTTTTCTAAGGATTTGTT+TGG + chr1_2:72664589-72664608 Msa0090590:intron 25.0%
!!! GTTTGGTTTCATAACATTTT+CGG + chr1_2:72664606-72664625 Msa0090590:intron 25.0%
!!! TTTGGTTTCATAACATTTTC+GGG + chr1_2:72664607-72664626 Msa0090590:intron 25.0%
! AAAACAAACTCAAAATAAGG+TGG - chr1_2:72664664-72664683 None:intergenic 25.0%
! CTGAAAACAAACTCAAAATA+AGG - chr1_2:72664667-72664686 None:intergenic 25.0%
!! TCAGTTTTCAAAACATTTTC+TGG + chr1_2:72664683-72664702 Msa0090590:intron 25.0%
!! TTTTTCACTTCCTTAGTTTA+CGG + chr1_2:72665089-72665108 Msa0090590:intron 25.0%
! ATTCCAAAAATTACAAACGT+GGG - chr1_2:72665165-72665184 None:intergenic 25.0%
! AATTCCAAAAATTACAAACG+TGG - chr1_2:72665166-72665185 None:intergenic 25.0%
!! ATGATTCTAGTTACTTAAGT+GGG - chr1_2:72665337-72665356 None:intergenic 25.0%
!! AATGATTCTAGTTACTTAAG+TGG - chr1_2:72665338-72665357 None:intergenic 25.0%
! CTATAACATATCAACTATCA+AGG - chr1_2:72665444-72665463 None:intergenic 25.0%
!! CTTGATAGTTGATATGTTAT+AGG + chr1_2:72665442-72665461 Msa0090590:intron 25.0%
! TGAGAAATATATTGTTTGTG+GGG - chr1_2:72665795-72665814 None:intergenic 25.0%
! CATGAGAAATATATTGTTTG+TGG - chr1_2:72665797-72665816 None:intergenic 25.0%
! ATATTTCTCATGAAAGATGA+AGG + chr1_2:72665805-72665824 Msa0090590:intron 25.0%
! TAACACTTGGAACATAAAAA+TGG - chr1_2:72665883-72665902 None:intergenic 25.0%
! AAATAGAATCAAGTGGTAAA+GGG + chr1_2:72666059-72666078 Msa0090590:CDS 25.0%
!!! ATCATTTTTAGAAATGAGTG+AGG - chr1_2:72666120-72666139 None:intergenic 25.0%
! ATAATGCAAAGACAACAATT+AGG - chr1_2:72666144-72666163 None:intergenic 25.0%
!!! TGTTGAATTTTAATTCACCT+TGG + chr1_2:72666309-72666328 Msa0090590:three_prime_UTR 25.0%
TATAAACAACCATAGACCAT+AGG - chr1_2:72662542-72662561 None:intergenic 30.0%
!!! TCAAAGTAGCTAAGGTTTTT+TGG - chr1_2:72662580-72662599 None:intergenic 30.0%
GTAAACCATCAAATTCAATC+TGG + chr1_2:72662814-72662833 Msa0090590:intron 30.0%
!! GAAAGTACTACTCAAGTTTA+AGG + chr1_2:72662879-72662898 Msa0090590:intron 30.0%
ACAACATTAAAGAGAGAGTT+CGG + chr1_2:72663048-72663067 Msa0090590:intron 30.0%
AGCACCTATATTAGAAAAGA+TGG + chr1_2:72663073-72663092 Msa0090590:intron 30.0%
GCACCTATATTAGAAAAGAT+GGG + chr1_2:72663074-72663093 Msa0090590:intron 30.0%
CACCTATATTAGAAAAGATG+GGG + chr1_2:72663075-72663094 Msa0090590:intron 30.0%
! TTCCCCATCTTTTCTAATAT+AGG - chr1_2:72663080-72663099 None:intergenic 30.0%
TTGAAAGCCAATGATTCTAT+TGG + chr1_2:72663543-72663562 Msa0090590:CDS 30.0%
! TGTTTACTTCTTGAGCATTT+TGG - chr1_2:72663607-72663626 None:intergenic 30.0%
! ATCCATACGACATATTTTGT+TGG - chr1_2:72663903-72663922 None:intergenic 30.0%
TACGCTTCTTATAAGTACTT+GGG + chr1_2:72663926-72663945 Msa0090590:intron 30.0%
CAGGTTTATATTGATACAGT+TGG + chr1_2:72664011-72664030 Msa0090590:intron 30.0%
! AACCTTTAATCCAACCTTTT+AGG + chr1_2:72664209-72664228 Msa0090590:intron 30.0%
GATCACAAACATTCTATCTT+TGG + chr1_2:72664444-72664463 Msa0090590:CDS 30.0%
AACATTAGTCAGGTTTAGTT+GGG + chr1_2:72664473-72664492 Msa0090590:CDS 30.0%
!!! ACTTGCAGCTCTTATTTTAA+AGG + chr1_2:72664498-72664517 Msa0090590:CDS 30.0%
AAATCCTTAGAAAACAAGTG+CGG - chr1_2:72664586-72664605 None:intergenic 30.0%
AATGAAAACAGAAACCAAAG+AGG + chr1_2:72664809-72664828 Msa0090590:intron 30.0%
CTGAACAGAACAGTATAAAA+AGG - chr1_2:72664847-72664866 None:intergenic 30.0%
GCAGTATGTCAACATTAATA+TGG - chr1_2:72664957-72664976 None:intergenic 30.0%
ATTAATGTTGACATACTGCT+AGG + chr1_2:72664958-72664977 Msa0090590:intron 30.0%
! TTTTCACTTCCTTAGTTTAC+GGG + chr1_2:72665090-72665109 Msa0090590:intron 30.0%
AAAAATTACAAACGTGGGAT+TGG - chr1_2:72665160-72665179 None:intergenic 30.0%
! AATCCCACGTTTGTAATTTT+TGG + chr1_2:72665159-72665178 Msa0090590:intron 30.0%
AACATGAAGTTAGTGGAATT+TGG - chr1_2:72665302-72665321 None:intergenic 30.0%
ATTGGATAACATGAAGTTAG+TGG - chr1_2:72665309-72665328 None:intergenic 30.0%
! TGATTCTAGTTACTTAAGTG+GGG - chr1_2:72665336-72665355 None:intergenic 30.0%
!! AAAAAAGTGACTTGTTTCTG+TGG - chr1_2:72665515-72665534 None:intergenic 30.0%
ATCTTTCAAAGTTACTTGTG+AGG + chr1_2:72665539-72665558 Msa0090590:intron 30.0%
!! AAAGGCACTGCAAAAAATAT+AGG - chr1_2:72665608-72665627 None:intergenic 30.0%
TTTCCTTTGTTGACAACAAA+AGG - chr1_2:72665626-72665645 None:intergenic 30.0%
AAATATATTGTTTGTGGGGT+GGG - chr1_2:72665791-72665810 None:intergenic 30.0%
! AGTTTTCCCCATATACATAA+TGG - chr1_2:72665844-72665863 None:intergenic 30.0%
GCAATAATAATAATGGCAAG+AGG + chr1_2:72665984-72666003 Msa0090590:CDS 30.0%
GAAATAGAATCAAGTGGTAA+AGG + chr1_2:72666058-72666077 Msa0090590:CDS 30.0%
! TGACTTTTATGTTTCTTGTG+TGG + chr1_2:72666359-72666378 Msa0090590:three_prime_UTR 30.0%
TATAAACAACCATAGACCAT+AGG - chr1_2:72662542-72662561 None:intergenic 30.0%
!!! TCAAAGTAGCTAAGGTTTTT+TGG - chr1_2:72662580-72662599 None:intergenic 30.0%
GTAAACCATCAAATTCAATC+TGG + chr1_2:72662814-72662833 Msa0090590:intron 30.0%
!! GAAAGTACTACTCAAGTTTA+AGG + chr1_2:72662879-72662898 Msa0090590:intron 30.0%
ACAACATTAAAGAGAGAGTT+CGG + chr1_2:72663048-72663067 Msa0090590:intron 30.0%
AGCACCTATATTAGAAAAGA+TGG + chr1_2:72663073-72663092 Msa0090590:intron 30.0%
GCACCTATATTAGAAAAGAT+GGG + chr1_2:72663074-72663093 Msa0090590:intron 30.0%
CACCTATATTAGAAAAGATG+GGG + chr1_2:72663075-72663094 Msa0090590:intron 30.0%
! TTCCCCATCTTTTCTAATAT+AGG - chr1_2:72663080-72663099 None:intergenic 30.0%
TTGAAAGCCAATGATTCTAT+TGG + chr1_2:72663543-72663562 Msa0090590:CDS 30.0%
! TGTTTACTTCTTGAGCATTT+TGG - chr1_2:72663607-72663626 None:intergenic 30.0%
! ATCCATACGACATATTTTGT+TGG - chr1_2:72663903-72663922 None:intergenic 30.0%
TACGCTTCTTATAAGTACTT+GGG + chr1_2:72663926-72663945 Msa0090590:intron 30.0%
CAGGTTTATATTGATACAGT+TGG + chr1_2:72664011-72664030 Msa0090590:intron 30.0%
! AACCTTTAATCCAACCTTTT+AGG + chr1_2:72664209-72664228 Msa0090590:intron 30.0%
GATCACAAACATTCTATCTT+TGG + chr1_2:72664444-72664463 Msa0090590:CDS 30.0%
AACATTAGTCAGGTTTAGTT+GGG + chr1_2:72664473-72664492 Msa0090590:CDS 30.0%
!!! ACTTGCAGCTCTTATTTTAA+AGG + chr1_2:72664498-72664517 Msa0090590:CDS 30.0%
AAATCCTTAGAAAACAAGTG+CGG - chr1_2:72664586-72664605 None:intergenic 30.0%
AATGAAAACAGAAACCAAAG+AGG + chr1_2:72664809-72664828 Msa0090590:intron 30.0%
CTGAACAGAACAGTATAAAA+AGG - chr1_2:72664847-72664866 None:intergenic 30.0%
GCAGTATGTCAACATTAATA+TGG - chr1_2:72664957-72664976 None:intergenic 30.0%
ATTAATGTTGACATACTGCT+AGG + chr1_2:72664958-72664977 Msa0090590:intron 30.0%
! TTTTCACTTCCTTAGTTTAC+GGG + chr1_2:72665090-72665109 Msa0090590:intron 30.0%
AAAAATTACAAACGTGGGAT+TGG - chr1_2:72665160-72665179 None:intergenic 30.0%
! AATCCCACGTTTGTAATTTT+TGG + chr1_2:72665159-72665178 Msa0090590:intron 30.0%
AACATGAAGTTAGTGGAATT+TGG - chr1_2:72665302-72665321 None:intergenic 30.0%
ATTGGATAACATGAAGTTAG+TGG - chr1_2:72665309-72665328 None:intergenic 30.0%
! TGATTCTAGTTACTTAAGTG+GGG - chr1_2:72665336-72665355 None:intergenic 30.0%
!! AAAAAAGTGACTTGTTTCTG+TGG - chr1_2:72665515-72665534 None:intergenic 30.0%
ATCTTTCAAAGTTACTTGTG+AGG + chr1_2:72665539-72665558 Msa0090590:intron 30.0%
!! AAAGGCACTGCAAAAAATAT+AGG - chr1_2:72665608-72665627 None:intergenic 30.0%
TTTCCTTTGTTGACAACAAA+AGG - chr1_2:72665626-72665645 None:intergenic 30.0%
AAATATATTGTTTGTGGGGT+GGG - chr1_2:72665791-72665810 None:intergenic 30.0%
! AGTTTTCCCCATATACATAA+TGG - chr1_2:72665844-72665863 None:intergenic 30.0%
GCAATAATAATAATGGCAAG+AGG + chr1_2:72665984-72666003 Msa0090590:CDS 30.0%
GAAATAGAATCAAGTGGTAA+AGG + chr1_2:72666058-72666077 Msa0090590:CDS 30.0%
! TGACTTTTATGTTTCTTGTG+TGG + chr1_2:72666359-72666378 Msa0090590:three_prime_UTR 30.0%
AGAAAGAAAGAAAGAAAGCG+CGG + chr1_2:72662409-72662428 Msa0090590:intron 35.0%
!!! AGTAGCTAAGGTTTTTTGGT+AGG - chr1_2:72662576-72662595 None:intergenic 35.0%
TTAAGAGAAGAGAAGAGAGT+AGG - chr1_2:72662615-72662634 None:intergenic 35.0%
TTCAACCGACACATAGAAAT+AGG + chr1_2:72662783-72662802 Msa0090590:intron 35.0%
!! CATCTCCTATTTCTATGTGT+CGG - chr1_2:72662791-72662810 None:intergenic 35.0%
CAACATTAAAGAGAGAGTTC+GGG + chr1_2:72663049-72663068 Msa0090590:intron 35.0%
TAGAAAAGATGGGGAAAACT+AGG + chr1_2:72663084-72663103 Msa0090590:intron 35.0%
GGTTTGTAGATGTTGTAGTA+AGG + chr1_2:72663135-72663154 Msa0090590:intron 35.0%
AGTAAGGAGAGTAGATCAAA+TGG + chr1_2:72663151-72663170 Msa0090590:intron 35.0%
AGATCTAGAGATTAACGAGT+TGG + chr1_2:72663226-72663245 Msa0090590:intron 35.0%
CTTATCCTGCTAAGTAGAAT+CGG - chr1_2:72663303-72663322 None:intergenic 35.0%
TGTCACATTTGCATCTTTGT+TGG + chr1_2:72663468-72663487 Msa0090590:intron 35.0%
AGACACTAAAAGAAGAGAAG+AGG + chr1_2:72663502-72663521 Msa0090590:CDS 35.0%
GACACTAAAAGAAGAGAAGA+GGG + chr1_2:72663503-72663522 Msa0090590:CDS 35.0%
AAGCCAATGATTCTATTGGA+TGG + chr1_2:72663547-72663566 Msa0090590:CDS 35.0%
AGCCAATGATTCTATTGGAT+GGG + chr1_2:72663548-72663567 Msa0090590:CDS 35.0%
AAGCAAAACCAAAAGGACTA+AGG - chr1_2:72663636-72663655 None:intergenic 35.0%
TGCCAACAAAATATGTCGTA+TGG + chr1_2:72663898-72663917 Msa0090590:intron 35.0%
GTACGCTTCTTATAAGTACT+TGG + chr1_2:72663925-72663944 Msa0090590:intron 35.0%
ATGTATAATTTGGGCTCTTC+AGG + chr1_2:72663992-72664011 Msa0090590:intron 35.0%
GCAACCACAAATTTGATAGA+TGG - chr1_2:72664077-72664096 None:intergenic 35.0%
CAAATTTGTGGTTGCAAAGA+AGG + chr1_2:72664082-72664101 Msa0090590:CDS 35.0%
TTAGTGCAGGAAATTCTACA+CGG - chr1_2:72664168-72664187 None:intergenic 35.0%
GACCTAAAAGGTTGGATTAA+AGG - chr1_2:72664214-72664233 None:intergenic 35.0%
AGATCGAGCTATAAGAGATT+GGG + chr1_2:72664239-72664258 Msa0090590:CDS 35.0%
GATAACATTCACAGGAACTT+TGG + chr1_2:72664279-72664298 Msa0090590:CDS 35.0%
!! TTGGTTTTCCAACATTAGTC+AGG + chr1_2:72664463-72664482 Msa0090590:CDS 35.0%
CAACTAAACCTGACTAATGT+TGG - chr1_2:72664474-72664493 None:intergenic 35.0%
CAACATTAGTCAGGTTTAGT+TGG + chr1_2:72664472-72664491 Msa0090590:CDS 35.0%
ACATTAGTCAGGTTTAGTTG+GGG + chr1_2:72664474-72664493 Msa0090590:CDS 35.0%
!!! TGCAGCTCTTATTTTAAAGG+TGG + chr1_2:72664501-72664520 Msa0090590:CDS 35.0%
!! TATACCGCACTTGTTTTCTA+AGG + chr1_2:72664579-72664598 Msa0090590:intron 35.0%
TTTGTTTGCCATACTTTCCA+CGG + chr1_2:72664884-72664903 Msa0090590:intron 35.0%
!!! TTTTTGGAATTTGCTCCTCT+TGG + chr1_2:72665175-72665194 Msa0090590:intron 35.0%
!!! TTTTGGAATTTGCTCCTCTT+GGG + chr1_2:72665176-72665195 Msa0090590:intron 35.0%
!! AATTACTTTTACAGCCCAAG+AGG - chr1_2:72665193-72665212 None:intergenic 35.0%
! ATTCTAGTTACTTAAGTGGG+GGG - chr1_2:72665334-72665353 None:intergenic 35.0%
! GATTCTAGTTACTTAAGTGG+GGG - chr1_2:72665335-72665354 None:intergenic 35.0%
AGTGAAATAGTCCTTGAGAA+AGG + chr1_2:72665415-72665434 Msa0090590:intron 35.0%
TATCAAGGATACCTTTCTCA+AGG - chr1_2:72665429-72665448 None:intergenic 35.0%
GTTGTGAAAATAGCACAAGT+TGG - chr1_2:72665471-72665490 None:intergenic 35.0%
TCAATAATCCTGAAAGCTGT+AGG + chr1_2:72665687-72665706 Msa0090590:intron 35.0%
AAAGCTGTAGGTATTATGCT+TGG + chr1_2:72665699-72665718 Msa0090590:intron 35.0%
CAAAGTTTGTAAGAGAAGAC+TGG - chr1_2:72665738-72665757 None:intergenic 35.0%
TTGAAGCATGAACAATGCAT+GGG + chr1_2:72665761-72665780 Msa0090590:intron 35.0%
AATATATTGTTTGTGGGGTG+GGG - chr1_2:72665790-72665809 None:intergenic 35.0%
GAAATATATTGTTTGTGGGG+TGG - chr1_2:72665792-72665811 None:intergenic 35.0%
! TTTTTATAGGGAGTCTGACT+TGG + chr1_2:72665946-72665965 Msa0090590:intron 35.0%
GGTGGCAGCAATAATAATAA+TGG + chr1_2:72665977-72665996 Msa0090590:CDS 35.0%
AGCGAAGAAATAGAATCAAG+TGG + chr1_2:72666052-72666071 Msa0090590:CDS 35.0%
AATACTAGTGCACATTTGGT+TGG - chr1_2:72666260-72666279 None:intergenic 35.0%
ACTCAATACTAGTGCACATT+TGG - chr1_2:72666264-72666283 None:intergenic 35.0%
TCTGAATGAAGTGATCGAAT+TGG + chr1_2:72666335-72666354 Msa0090590:three_prime_UTR 35.0%
AGAAAGAAAGAAAGAAAGCG+CGG + chr1_2:72662409-72662428 Msa0090590:intron 35.0%
!!! AGTAGCTAAGGTTTTTTGGT+AGG - chr1_2:72662576-72662595 None:intergenic 35.0%
TTAAGAGAAGAGAAGAGAGT+AGG - chr1_2:72662615-72662634 None:intergenic 35.0%
TTCAACCGACACATAGAAAT+AGG + chr1_2:72662783-72662802 Msa0090590:intron 35.0%
!! CATCTCCTATTTCTATGTGT+CGG - chr1_2:72662791-72662810 None:intergenic 35.0%
CAACATTAAAGAGAGAGTTC+GGG + chr1_2:72663049-72663068 Msa0090590:intron 35.0%
TAGAAAAGATGGGGAAAACT+AGG + chr1_2:72663084-72663103 Msa0090590:intron 35.0%
GGTTTGTAGATGTTGTAGTA+AGG + chr1_2:72663135-72663154 Msa0090590:intron 35.0%
AGTAAGGAGAGTAGATCAAA+TGG + chr1_2:72663151-72663170 Msa0090590:intron 35.0%
AGATCTAGAGATTAACGAGT+TGG + chr1_2:72663226-72663245 Msa0090590:intron 35.0%
CTTATCCTGCTAAGTAGAAT+CGG - chr1_2:72663303-72663322 None:intergenic 35.0%
TGTCACATTTGCATCTTTGT+TGG + chr1_2:72663468-72663487 Msa0090590:intron 35.0%
AGACACTAAAAGAAGAGAAG+AGG + chr1_2:72663502-72663521 Msa0090590:CDS 35.0%
GACACTAAAAGAAGAGAAGA+GGG + chr1_2:72663503-72663522 Msa0090590:CDS 35.0%
AAGCCAATGATTCTATTGGA+TGG + chr1_2:72663547-72663566 Msa0090590:CDS 35.0%
AGCCAATGATTCTATTGGAT+GGG + chr1_2:72663548-72663567 Msa0090590:CDS 35.0%
AAGCAAAACCAAAAGGACTA+AGG - chr1_2:72663636-72663655 None:intergenic 35.0%
TGCCAACAAAATATGTCGTA+TGG + chr1_2:72663898-72663917 Msa0090590:intron 35.0%
GTACGCTTCTTATAAGTACT+TGG + chr1_2:72663925-72663944 Msa0090590:intron 35.0%
ATGTATAATTTGGGCTCTTC+AGG + chr1_2:72663992-72664011 Msa0090590:intron 35.0%
GCAACCACAAATTTGATAGA+TGG - chr1_2:72664077-72664096 None:intergenic 35.0%
CAAATTTGTGGTTGCAAAGA+AGG + chr1_2:72664082-72664101 Msa0090590:CDS 35.0%
TTAGTGCAGGAAATTCTACA+CGG - chr1_2:72664168-72664187 None:intergenic 35.0%
GACCTAAAAGGTTGGATTAA+AGG - chr1_2:72664214-72664233 None:intergenic 35.0%
AGATCGAGCTATAAGAGATT+GGG + chr1_2:72664239-72664258 Msa0090590:CDS 35.0%
GATAACATTCACAGGAACTT+TGG + chr1_2:72664279-72664298 Msa0090590:CDS 35.0%
!! TTGGTTTTCCAACATTAGTC+AGG + chr1_2:72664463-72664482 Msa0090590:CDS 35.0%
CAACTAAACCTGACTAATGT+TGG - chr1_2:72664474-72664493 None:intergenic 35.0%
CAACATTAGTCAGGTTTAGT+TGG + chr1_2:72664472-72664491 Msa0090590:CDS 35.0%
ACATTAGTCAGGTTTAGTTG+GGG + chr1_2:72664474-72664493 Msa0090590:CDS 35.0%
!!! TGCAGCTCTTATTTTAAAGG+TGG + chr1_2:72664501-72664520 Msa0090590:CDS 35.0%
!! TATACCGCACTTGTTTTCTA+AGG + chr1_2:72664579-72664598 Msa0090590:intron 35.0%
TTTGTTTGCCATACTTTCCA+CGG + chr1_2:72664884-72664903 Msa0090590:intron 35.0%
!!! TTTTTGGAATTTGCTCCTCT+TGG + chr1_2:72665175-72665194 Msa0090590:intron 35.0%
!!! TTTTGGAATTTGCTCCTCTT+GGG + chr1_2:72665176-72665195 Msa0090590:intron 35.0%
!! AATTACTTTTACAGCCCAAG+AGG - chr1_2:72665193-72665212 None:intergenic 35.0%
! ATTCTAGTTACTTAAGTGGG+GGG - chr1_2:72665334-72665353 None:intergenic 35.0%
! GATTCTAGTTACTTAAGTGG+GGG - chr1_2:72665335-72665354 None:intergenic 35.0%
AGTGAAATAGTCCTTGAGAA+AGG + chr1_2:72665415-72665434 Msa0090590:intron 35.0%
TATCAAGGATACCTTTCTCA+AGG - chr1_2:72665429-72665448 None:intergenic 35.0%
GTTGTGAAAATAGCACAAGT+TGG - chr1_2:72665471-72665490 None:intergenic 35.0%
TCAATAATCCTGAAAGCTGT+AGG + chr1_2:72665687-72665706 Msa0090590:intron 35.0%
AAAGCTGTAGGTATTATGCT+TGG + chr1_2:72665699-72665718 Msa0090590:intron 35.0%
CAAAGTTTGTAAGAGAAGAC+TGG - chr1_2:72665738-72665757 None:intergenic 35.0%
TTGAAGCATGAACAATGCAT+GGG + chr1_2:72665761-72665780 Msa0090590:intron 35.0%
AATATATTGTTTGTGGGGTG+GGG - chr1_2:72665790-72665809 None:intergenic 35.0%
GAAATATATTGTTTGTGGGG+TGG - chr1_2:72665792-72665811 None:intergenic 35.0%
! TTTTTATAGGGAGTCTGACT+TGG + chr1_2:72665946-72665965 Msa0090590:intron 35.0%
GGTGGCAGCAATAATAATAA+TGG + chr1_2:72665977-72665996 Msa0090590:CDS 35.0%
AGCGAAGAAATAGAATCAAG+TGG + chr1_2:72666052-72666071 Msa0090590:CDS 35.0%
AATACTAGTGCACATTTGGT+TGG - chr1_2:72666260-72666279 None:intergenic 35.0%
ACTCAATACTAGTGCACATT+TGG - chr1_2:72666264-72666283 None:intergenic 35.0%
TCTGAATGAAGTGATCGAAT+TGG + chr1_2:72666335-72666354 Msa0090590:three_prime_UTR 35.0%
CTAACTAACATCAGAGCAGA+GGG + chr1_2:72662338-72662357 Msa0090590:five_prime_UTR 40.0%
! GTTGTTTGTTGAGCGGAAAT+GGG + chr1_2:72662431-72662450 Msa0090590:intron 40.0%
!!! AAGGTTTTTTGGTAGGAGAG+AGG - chr1_2:72662569-72662588 None:intergenic 40.0%
TGCGAAACTCAAAGTAGCTA+AGG - chr1_2:72662588-72662607 None:intergenic 40.0%
! TTAGCTACTTTGAGTTTCGC+AGG + chr1_2:72662587-72662606 Msa0090590:CDS 40.0%
! AAAATGGAAAGCTCTGGCAA+TGG - chr1_2:72662668-72662687 None:intergenic 40.0%
TTATTGCCACTGTTTACGTG+TGG + chr1_2:72662751-72662770 Msa0090590:intron 40.0%
ATACAACCACACGTAAACAG+TGG - chr1_2:72662760-72662779 None:intergenic 40.0%
ACCATCAAATTCAATCTGGG+TGG + chr1_2:72662818-72662837 Msa0090590:intron 40.0%
ACCACCCAGATTGAATTTGA+TGG - chr1_2:72662822-72662841 None:intergenic 40.0%
TTCAATCTGGGTGGTTGAAA+TGG + chr1_2:72662827-72662846 Msa0090590:intron 40.0%
ATGTTGTATGGGACAGTGTT+GGG + chr1_2:72662925-72662944 Msa0090590:intron 40.0%
CTGAGATGAGATTGTTGCAT+TGG + chr1_2:72662988-72663007 Msa0090590:intron 40.0%
AGATGGGGAAAACTAGGATT+TGG + chr1_2:72663090-72663109 Msa0090590:intron 40.0%
AAGGAGAGTAGATCAAATGG+AGG + chr1_2:72663154-72663173 Msa0090590:intron 40.0%
GAGGATAATCAGATCACTAG+AGG + chr1_2:72663173-72663192 Msa0090590:intron 40.0%
AATCAGATCACTAGAGGTAG+AGG + chr1_2:72663179-72663198 Msa0090590:intron 40.0%
CGATTCTACTTAGCAGGATA+AGG + chr1_2:72663301-72663320 Msa0090590:intron 40.0%
TATGTACCATTGACACAGAC+AGG - chr1_2:72663362-72663381 None:intergenic 40.0%
AGCCCATCCAATAGAATCAT+TGG - chr1_2:72663553-72663572 None:intergenic 40.0%
TGTTGATGTCATTGACCCAA+AGG + chr1_2:72663572-72663591 Msa0090590:CDS 40.0%
! TTTTGGCAGAGAGTTCCTTT+GGG - chr1_2:72663590-72663609 None:intergenic 40.0%
!! ATTTTGGCAGAGAGTTCCTT+TGG - chr1_2:72663591-72663610 None:intergenic 40.0%
! CAAACAGACCTTAGTCCTTT+TGG + chr1_2:72663625-72663644 Msa0090590:intron 40.0%
ATATCACATGACTCTGCCAT+GGG + chr1_2:72663740-72663759 Msa0090590:CDS 40.0%
! GTTGATAGGGTGCTCAAAAT+GGG + chr1_2:72663767-72663786 Msa0090590:CDS 40.0%
!!! AATGGGAGTGCTTTTAACTG+AGG + chr1_2:72663784-72663803 Msa0090590:CDS 40.0%
! TCTGAAGTCATGTTAGAGCT+GGG - chr1_2:72663849-72663868 None:intergenic 40.0%
! ATCTGAAGTCATGTTAGAGC+TGG - chr1_2:72663850-72663869 None:intergenic 40.0%
ATTGATACAGTTGGAGATCC+AGG + chr1_2:72664020-72664039 Msa0090590:CDS 40.0%
TTGATACAGTTGGAGATCCA+GGG + chr1_2:72664021-72664040 Msa0090590:CDS 40.0%
AGTCTTTATCCTGTTGTCAG+TGG + chr1_2:72664110-72664129 Msa0090590:CDS 40.0%
TGGTGCAAGTATAGTTGCAA+AGG + chr1_2:72664130-72664149 Msa0090590:CDS 40.0%
TAGTGCAGGAAATTCTACAC+GGG - chr1_2:72664167-72664186 None:intergenic 40.0%
ACGGTAAAACTTCTTAGTGC+AGG - chr1_2:72664181-72664200 None:intergenic 40.0%
GATTAAAGGTTGCAGGTAGA+CGG - chr1_2:72664200-72664219 None:intergenic 40.0%
AAGGTTGGATTAAAGGTTGC+AGG - chr1_2:72664207-72664226 None:intergenic 40.0%
TCTCTTGTGACCTAAAAGGT+TGG - chr1_2:72664222-72664241 None:intergenic 40.0%
TCGATCTCTTGTGACCTAAA+AGG - chr1_2:72664226-72664245 None:intergenic 40.0%
GAGATCGAGCTATAAGAGAT+TGG + chr1_2:72664238-72664257 Msa0090590:CDS 40.0%
AGTCTGCTGATAACATTCAC+AGG + chr1_2:72664271-72664290 Msa0090590:CDS 40.0%
GTATACAGTCACAGAATGCA+TGG - chr1_2:72664564-72664583 None:intergenic 40.0%
AGCAGTTAAGCTGCTTATGA+TGG - chr1_2:72664996-72665015 None:intergenic 40.0%
ATCTTGAAGCCCGTAAACTA+AGG - chr1_2:72665102-72665121 None:intergenic 40.0%
TTACTTAAGTGGGGGGAAAT+TGG - chr1_2:72665327-72665346 None:intergenic 40.0%
!! GTGCCTTTTGTTGTCAACAA+AGG + chr1_2:72665620-72665639 Msa0090590:intron 40.0%
GCATAATACCTACAGCTTTC+AGG - chr1_2:72665698-72665717 None:intergenic 40.0%
CTTGAAGCATGAACAATGCA+TGG + chr1_2:72665760-72665779 Msa0090590:intron 40.0%
ATATATTGTTTGTGGGGTGG+GGG - chr1_2:72665789-72665808 None:intergenic 40.0%
TATTTCTTCGCTTCTCCTCT+TGG - chr1_2:72666044-72666063 None:intergenic 40.0%
!!! GTTCTAGGTTTTTTCAGGCT+CGG + chr1_2:72666083-72666102 Msa0090590:CDS 40.0%
TCACTTCATTCAGATGTCCA+AGG - chr1_2:72666329-72666348 None:intergenic 40.0%
CTAACTAACATCAGAGCAGA+GGG + chr1_2:72662338-72662357 Msa0090590:five_prime_UTR 40.0%
! GTTGTTTGTTGAGCGGAAAT+GGG + chr1_2:72662431-72662450 Msa0090590:intron 40.0%
!!! AAGGTTTTTTGGTAGGAGAG+AGG - chr1_2:72662569-72662588 None:intergenic 40.0%
TGCGAAACTCAAAGTAGCTA+AGG - chr1_2:72662588-72662607 None:intergenic 40.0%
! TTAGCTACTTTGAGTTTCGC+AGG + chr1_2:72662587-72662606 Msa0090590:CDS 40.0%
! AAAATGGAAAGCTCTGGCAA+TGG - chr1_2:72662668-72662687 None:intergenic 40.0%
TTATTGCCACTGTTTACGTG+TGG + chr1_2:72662751-72662770 Msa0090590:intron 40.0%
ATACAACCACACGTAAACAG+TGG - chr1_2:72662760-72662779 None:intergenic 40.0%
ACCATCAAATTCAATCTGGG+TGG + chr1_2:72662818-72662837 Msa0090590:intron 40.0%
ACCACCCAGATTGAATTTGA+TGG - chr1_2:72662822-72662841 None:intergenic 40.0%
TTCAATCTGGGTGGTTGAAA+TGG + chr1_2:72662827-72662846 Msa0090590:intron 40.0%
ATGTTGTATGGGACAGTGTT+GGG + chr1_2:72662925-72662944 Msa0090590:intron 40.0%
CTGAGATGAGATTGTTGCAT+TGG + chr1_2:72662988-72663007 Msa0090590:intron 40.0%
AGATGGGGAAAACTAGGATT+TGG + chr1_2:72663090-72663109 Msa0090590:intron 40.0%
AAGGAGAGTAGATCAAATGG+AGG + chr1_2:72663154-72663173 Msa0090590:intron 40.0%
GAGGATAATCAGATCACTAG+AGG + chr1_2:72663173-72663192 Msa0090590:intron 40.0%
AATCAGATCACTAGAGGTAG+AGG + chr1_2:72663179-72663198 Msa0090590:intron 40.0%
CGATTCTACTTAGCAGGATA+AGG + chr1_2:72663301-72663320 Msa0090590:intron 40.0%
TATGTACCATTGACACAGAC+AGG - chr1_2:72663362-72663381 None:intergenic 40.0%
AGCCCATCCAATAGAATCAT+TGG - chr1_2:72663553-72663572 None:intergenic 40.0%
TGTTGATGTCATTGACCCAA+AGG + chr1_2:72663572-72663591 Msa0090590:CDS 40.0%
! TTTTGGCAGAGAGTTCCTTT+GGG - chr1_2:72663590-72663609 None:intergenic 40.0%
!! ATTTTGGCAGAGAGTTCCTT+TGG - chr1_2:72663591-72663610 None:intergenic 40.0%
! CAAACAGACCTTAGTCCTTT+TGG + chr1_2:72663625-72663644 Msa0090590:intron 40.0%
ATATCACATGACTCTGCCAT+GGG + chr1_2:72663740-72663759 Msa0090590:CDS 40.0%
! GTTGATAGGGTGCTCAAAAT+GGG + chr1_2:72663767-72663786 Msa0090590:CDS 40.0%
!!! AATGGGAGTGCTTTTAACTG+AGG + chr1_2:72663784-72663803 Msa0090590:CDS 40.0%
! TCTGAAGTCATGTTAGAGCT+GGG - chr1_2:72663849-72663868 None:intergenic 40.0%
! ATCTGAAGTCATGTTAGAGC+TGG - chr1_2:72663850-72663869 None:intergenic 40.0%
ATTGATACAGTTGGAGATCC+AGG + chr1_2:72664020-72664039 Msa0090590:CDS 40.0%
TTGATACAGTTGGAGATCCA+GGG + chr1_2:72664021-72664040 Msa0090590:CDS 40.0%
AGTCTTTATCCTGTTGTCAG+TGG + chr1_2:72664110-72664129 Msa0090590:CDS 40.0%
TGGTGCAAGTATAGTTGCAA+AGG + chr1_2:72664130-72664149 Msa0090590:CDS 40.0%
TAGTGCAGGAAATTCTACAC+GGG - chr1_2:72664167-72664186 None:intergenic 40.0%
ACGGTAAAACTTCTTAGTGC+AGG - chr1_2:72664181-72664200 None:intergenic 40.0%
GATTAAAGGTTGCAGGTAGA+CGG - chr1_2:72664200-72664219 None:intergenic 40.0%
AAGGTTGGATTAAAGGTTGC+AGG - chr1_2:72664207-72664226 None:intergenic 40.0%
TCTCTTGTGACCTAAAAGGT+TGG - chr1_2:72664222-72664241 None:intergenic 40.0%
TCGATCTCTTGTGACCTAAA+AGG - chr1_2:72664226-72664245 None:intergenic 40.0%
GAGATCGAGCTATAAGAGAT+TGG + chr1_2:72664238-72664257 Msa0090590:CDS 40.0%
AGTCTGCTGATAACATTCAC+AGG + chr1_2:72664271-72664290 Msa0090590:CDS 40.0%
GTATACAGTCACAGAATGCA+TGG - chr1_2:72664564-72664583 None:intergenic 40.0%
AGCAGTTAAGCTGCTTATGA+TGG - chr1_2:72664996-72665015 None:intergenic 40.0%
ATCTTGAAGCCCGTAAACTA+AGG - chr1_2:72665102-72665121 None:intergenic 40.0%
TTACTTAAGTGGGGGGAAAT+TGG - chr1_2:72665327-72665346 None:intergenic 40.0%
!! GTGCCTTTTGTTGTCAACAA+AGG + chr1_2:72665620-72665639 Msa0090590:intron 40.0%
GCATAATACCTACAGCTTTC+AGG - chr1_2:72665698-72665717 None:intergenic 40.0%
CTTGAAGCATGAACAATGCA+TGG + chr1_2:72665760-72665779 Msa0090590:intron 40.0%
ATATATTGTTTGTGGGGTGG+GGG - chr1_2:72665789-72665808 None:intergenic 40.0%
TATTTCTTCGCTTCTCCTCT+TGG - chr1_2:72666044-72666063 None:intergenic 40.0%
!!! GTTCTAGGTTTTTTCAGGCT+CGG + chr1_2:72666083-72666102 Msa0090590:CDS 40.0%
TCACTTCATTCAGATGTCCA+AGG - chr1_2:72666329-72666348 None:intergenic 40.0%
CCTCTGCTCTGATGTTAGTT+AGG - chr1_2:72662340-72662359 None:intergenic 45.0%
CCTAACTAACATCAGAGCAG+AGG + chr1_2:72662337-72662356 Msa0090590:five_prime_UTR 45.0%
ATCAGAGCAGAGGGTTGAAA+TGG + chr1_2:72662347-72662366 Msa0090590:five_prime_UTR 45.0%
! GAAATGGCGGGAAGTTGAAA+AGG + chr1_2:72662363-72662382 Msa0090590:five_prime_UTR 45.0%
! GGTTGTTTGTTGAGCGGAAA+TGG + chr1_2:72662430-72662449 Msa0090590:intron 45.0%
! AATGGGATCTGAAGCTGGTA+TGG + chr1_2:72662448-72662467 Msa0090590:exon 45.0%
! ATCTGAAGCTGGTATGGTTC+CGG + chr1_2:72662454-72662473 Msa0090590:CDS 45.0%
! ATAATGGGAATCGACGAAGC+TGG + chr1_2:72662497-72662516 Msa0090590:CDS 45.0%
AACCATAGACCATAGGACCA+AGG - chr1_2:72662535-72662554 None:intergenic 45.0%
AATCTGGGTGGTTGAAATGG+TGG + chr1_2:72662830-72662849 Msa0090590:intron 45.0%
! CCATACAACATCGTTGGTCT+CGG - chr1_2:72662916-72662935 None:intergenic 45.0%
CGAGACCAACGATGTTGTAT+GGG + chr1_2:72662914-72662933 Msa0090590:intron 45.0%
ACTGTCCCATACAACATCGT+TGG - chr1_2:72662922-72662941 None:intergenic 45.0%
GATGTTGTATGGGACAGTGT+TGG + chr1_2:72662924-72662943 Msa0090590:intron 45.0%
TGGGGAAAACTAGGATTTGG+TGG + chr1_2:72663093-72663112 Msa0090590:intron 45.0%
GGTTTGTGCTTGTAGAGAGA+AGG + chr1_2:72663114-72663133 Msa0090590:intron 45.0%
CTAGAGGTAGAGGTAGACTT+AGG + chr1_2:72663189-72663208 Msa0090590:intron 45.0%
! TGTAGCCGATTCTACTTAGC+AGG + chr1_2:72663295-72663314 Msa0090590:intron 45.0%
GATATCACATGACTCTGCCA+TGG + chr1_2:72663739-72663758 Msa0090590:CDS 45.0%
! TTTTGAGCACCCTATCAACG+AGG - chr1_2:72663766-72663785 None:intergenic 45.0%
! CGTTGATAGGGTGCTCAAAA+TGG + chr1_2:72663766-72663785 Msa0090590:CDS 45.0%
AGTCATGTTAGAGCTGGGAA+AGG - chr1_2:72663844-72663863 None:intergenic 45.0%
AGCTTCGCTTCATATTTCCC+TGG - chr1_2:72664041-72664060 None:intergenic 45.0%
ATACTTGCACCACTGACAAC+AGG - chr1_2:72664122-72664141 None:intergenic 45.0%
AAATTCTACACGGGAGAGTG+AGG - chr1_2:72664158-72664177 None:intergenic 45.0%
! ATTCACAGGAACTTTGGCTC+TGG + chr1_2:72664285-72664304 Msa0090590:CDS 45.0%
!! AACTTTGGCTCTGGATATCC+CGG + chr1_2:72664294-72664313 Msa0090590:CDS 45.0%
TAGATCCTGCAACCAAGTCT+TGG + chr1_2:72664415-72664434 Msa0090590:intron 45.0%
GTGATCTTCTAGCCAAGACT+TGG - chr1_2:72664430-72664449 None:intergenic 45.0%
! AAGGTGGCACTGAAGTCTTA+TGG + chr1_2:72664517-72664536 Msa0090590:CDS 45.0%
CAAACACACCGTGGAAAGTA+TGG - chr1_2:72664895-72664914 None:intergenic 45.0%
TTCCACGGTGTGTTTGAACT+AGG + chr1_2:72664899-72664918 Msa0090590:intron 45.0%
TGTGTTTGAACTAGGCTGGT+AGG + chr1_2:72664907-72664926 Msa0090590:intron 45.0%
! GTTTCTGTGGTGCTAAGATC+AGG - chr1_2:72665502-72665521 None:intergenic 45.0%
TATATTGTTTGTGGGGTGGG+GGG - chr1_2:72665788-72665807 None:intergenic 45.0%
TGTTCCAAGTGTTACGTGCT+AGG + chr1_2:72665889-72665908 Msa0090590:intron 45.0%
!! GAGTCTGACTTGGATGAAGA+TGG + chr1_2:72665956-72665975 Msa0090590:CDS 45.0%
!! TCTGACTTGGATGAAGATGG+TGG + chr1_2:72665959-72665978 Msa0090590:CDS 45.0%
!!! AGGGCGTTCTAGGTTTTTTC+AGG + chr1_2:72666078-72666097 Msa0090590:CDS 45.0%
AGTGCACATTTGGTTGGACT+GGG - chr1_2:72666254-72666273 None:intergenic 45.0%
TAGTGCACATTTGGTTGGAC+TGG - chr1_2:72666255-72666274 None:intergenic 45.0%
CCTCTGCTCTGATGTTAGTT+AGG - chr1_2:72662340-72662359 None:intergenic 45.0%
CCTAACTAACATCAGAGCAG+AGG + chr1_2:72662337-72662356 Msa0090590:five_prime_UTR 45.0%
ATCAGAGCAGAGGGTTGAAA+TGG + chr1_2:72662347-72662366 Msa0090590:five_prime_UTR 45.0%
! GAAATGGCGGGAAGTTGAAA+AGG + chr1_2:72662363-72662382 Msa0090590:five_prime_UTR 45.0%
! GGTTGTTTGTTGAGCGGAAA+TGG + chr1_2:72662430-72662449 Msa0090590:intron 45.0%
! AATGGGATCTGAAGCTGGTA+TGG + chr1_2:72662448-72662467 Msa0090590:exon 45.0%
! ATCTGAAGCTGGTATGGTTC+CGG + chr1_2:72662454-72662473 Msa0090590:CDS 45.0%
! ATAATGGGAATCGACGAAGC+TGG + chr1_2:72662497-72662516 Msa0090590:CDS 45.0%
AACCATAGACCATAGGACCA+AGG - chr1_2:72662535-72662554 None:intergenic 45.0%
AATCTGGGTGGTTGAAATGG+TGG + chr1_2:72662830-72662849 Msa0090590:intron 45.0%
! CCATACAACATCGTTGGTCT+CGG - chr1_2:72662916-72662935 None:intergenic 45.0%
CGAGACCAACGATGTTGTAT+GGG + chr1_2:72662914-72662933 Msa0090590:intron 45.0%
ACTGTCCCATACAACATCGT+TGG - chr1_2:72662922-72662941 None:intergenic 45.0%
GATGTTGTATGGGACAGTGT+TGG + chr1_2:72662924-72662943 Msa0090590:intron 45.0%
TGGGGAAAACTAGGATTTGG+TGG + chr1_2:72663093-72663112 Msa0090590:intron 45.0%
GGTTTGTGCTTGTAGAGAGA+AGG + chr1_2:72663114-72663133 Msa0090590:intron 45.0%
CTAGAGGTAGAGGTAGACTT+AGG + chr1_2:72663189-72663208 Msa0090590:intron 45.0%
! TGTAGCCGATTCTACTTAGC+AGG + chr1_2:72663295-72663314 Msa0090590:intron 45.0%
GATATCACATGACTCTGCCA+TGG + chr1_2:72663739-72663758 Msa0090590:CDS 45.0%
! TTTTGAGCACCCTATCAACG+AGG - chr1_2:72663766-72663785 None:intergenic 45.0%
! CGTTGATAGGGTGCTCAAAA+TGG + chr1_2:72663766-72663785 Msa0090590:CDS 45.0%
AGTCATGTTAGAGCTGGGAA+AGG - chr1_2:72663844-72663863 None:intergenic 45.0%
AGCTTCGCTTCATATTTCCC+TGG - chr1_2:72664041-72664060 None:intergenic 45.0%
ATACTTGCACCACTGACAAC+AGG - chr1_2:72664122-72664141 None:intergenic 45.0%
AAATTCTACACGGGAGAGTG+AGG - chr1_2:72664158-72664177 None:intergenic 45.0%
! ATTCACAGGAACTTTGGCTC+TGG + chr1_2:72664285-72664304 Msa0090590:CDS 45.0%
!! AACTTTGGCTCTGGATATCC+CGG + chr1_2:72664294-72664313 Msa0090590:CDS 45.0%
TAGATCCTGCAACCAAGTCT+TGG + chr1_2:72664415-72664434 Msa0090590:intron 45.0%
GTGATCTTCTAGCCAAGACT+TGG - chr1_2:72664430-72664449 None:intergenic 45.0%
! AAGGTGGCACTGAAGTCTTA+TGG + chr1_2:72664517-72664536 Msa0090590:CDS 45.0%
CAAACACACCGTGGAAAGTA+TGG - chr1_2:72664895-72664914 None:intergenic 45.0%
TTCCACGGTGTGTTTGAACT+AGG + chr1_2:72664899-72664918 Msa0090590:intron 45.0%
TGTGTTTGAACTAGGCTGGT+AGG + chr1_2:72664907-72664926 Msa0090590:intron 45.0%
! GTTTCTGTGGTGCTAAGATC+AGG - chr1_2:72665502-72665521 None:intergenic 45.0%
TATATTGTTTGTGGGGTGGG+GGG - chr1_2:72665788-72665807 None:intergenic 45.0%
TGTTCCAAGTGTTACGTGCT+AGG + chr1_2:72665889-72665908 Msa0090590:intron 45.0%
!! GAGTCTGACTTGGATGAAGA+TGG + chr1_2:72665956-72665975 Msa0090590:CDS 45.0%
!! TCTGACTTGGATGAAGATGG+TGG + chr1_2:72665959-72665978 Msa0090590:CDS 45.0%
!!! AGGGCGTTCTAGGTTTTTTC+AGG + chr1_2:72666078-72666097 Msa0090590:CDS 45.0%
AGTGCACATTTGGTTGGACT+GGG - chr1_2:72666254-72666273 None:intergenic 45.0%
TAGTGCACATTTGGTTGGAC+TGG - chr1_2:72666255-72666274 None:intergenic 45.0%
!! AAATTAAATAAAAGAATAAA+TGG - chr1_2:72665066-72665085 None:intergenic 5.0%
!! AAATTAAATAAAAGAATAAA+TGG - chr1_2:72665066-72665085 None:intergenic 5.0%
AGAGCAGAGGGTTGAAATGG+CGG + chr1_2:72662350-72662369 Msa0090590:five_prime_UTR 50.0%
! AAGCGCGGTTGTTTGTTGAG+CGG + chr1_2:72662424-72662443 Msa0090590:intron 50.0%
AAGCTGGTATGGTTCCGGAA+TGG + chr1_2:72662459-72662478 Msa0090590:CDS 50.0%
AGCTGGTATGGTTCCGGAAT+GGG + chr1_2:72662460-72662479 Msa0090590:CDS 50.0%
TATGGTTCCGGAATGGGCAT+CGG + chr1_2:72662466-72662485 Msa0090590:CDS 50.0%
GCATCGGAGGCTTGCATAAT+GGG + chr1_2:72662482-72662501 Msa0090590:CDS 50.0%
TAGACCATAGGACCAAGGAC+AGG - chr1_2:72662530-72662549 None:intergenic 50.0%
GTCCTTGGTCCTATGGTCTA+TGG + chr1_2:72662530-72662549 Msa0090590:CDS 50.0%
CCGAGACCAACGATGTTGTA+TGG + chr1_2:72662913-72662932 Msa0090590:intron 50.0%
CACTGTCCTGTCTGTGTCAA+TGG + chr1_2:72663353-72663372 Msa0090590:intron 50.0%
AGTCATGACCTACTCACCTC+CGG - chr1_2:72664316-72664335 None:intergenic 50.0%
! TCTAGCCAAGACTTGGTTGC+AGG - chr1_2:72664423-72664442 None:intergenic 50.0%
GGAAAAACGCAGAGCCTCTT+TGG - chr1_2:72664826-72664845 None:intergenic 50.0%
AGCCTAGTTCAAACACACCG+TGG - chr1_2:72664904-72664923 None:intergenic 50.0%
ACGGTGTGTTTGAACTAGGC+TGG + chr1_2:72664903-72664922 Msa0090590:intron 50.0%
AACGCCTAGCACGTAACACT+TGG - chr1_2:72665896-72665915 None:intergenic 50.0%
TGGGTTTCACCACATCCAAG+AGG + chr1_2:72666026-72666045 Msa0090590:CDS 50.0%
TTCGCTTCTCCTCTTGGATG+TGG - chr1_2:72666038-72666057 None:intergenic 50.0%
!! CAAGTGGTAAAGGGCGTTCT+AGG + chr1_2:72666068-72666087 Msa0090590:CDS 50.0%
AGAGCAGAGGGTTGAAATGG+CGG + chr1_2:72662350-72662369 Msa0090590:five_prime_UTR 50.0%
! AAGCGCGGTTGTTTGTTGAG+CGG + chr1_2:72662424-72662443 Msa0090590:intron 50.0%
AAGCTGGTATGGTTCCGGAA+TGG + chr1_2:72662459-72662478 Msa0090590:CDS 50.0%
AGCTGGTATGGTTCCGGAAT+GGG + chr1_2:72662460-72662479 Msa0090590:CDS 50.0%
TATGGTTCCGGAATGGGCAT+CGG + chr1_2:72662466-72662485 Msa0090590:CDS 50.0%
GCATCGGAGGCTTGCATAAT+GGG + chr1_2:72662482-72662501 Msa0090590:CDS 50.0%
TAGACCATAGGACCAAGGAC+AGG - chr1_2:72662530-72662549 None:intergenic 50.0%
GTCCTTGGTCCTATGGTCTA+TGG + chr1_2:72662530-72662549 Msa0090590:CDS 50.0%
CCGAGACCAACGATGTTGTA+TGG + chr1_2:72662913-72662932 Msa0090590:intron 50.0%
CACTGTCCTGTCTGTGTCAA+TGG + chr1_2:72663353-72663372 Msa0090590:intron 50.0%
AGTCATGACCTACTCACCTC+CGG - chr1_2:72664316-72664335 None:intergenic 50.0%
! TCTAGCCAAGACTTGGTTGC+AGG - chr1_2:72664423-72664442 None:intergenic 50.0%
GGAAAAACGCAGAGCCTCTT+TGG - chr1_2:72664826-72664845 None:intergenic 50.0%
AGCCTAGTTCAAACACACCG+TGG - chr1_2:72664904-72664923 None:intergenic 50.0%
ACGGTGTGTTTGAACTAGGC+TGG + chr1_2:72664903-72664922 Msa0090590:intron 50.0%
AACGCCTAGCACGTAACACT+TGG - chr1_2:72665896-72665915 None:intergenic 50.0%
TGGGTTTCACCACATCCAAG+AGG + chr1_2:72666026-72666045 Msa0090590:CDS 50.0%
TTCGCTTCTCCTCTTGGATG+TGG - chr1_2:72666038-72666057 None:intergenic 50.0%
!! CAAGTGGTAAAGGGCGTTCT+AGG + chr1_2:72666068-72666087 Msa0090590:CDS 50.0%
GAGCAGAGGGTTGAAATGGC+GGG + chr1_2:72662351-72662370 Msa0090590:five_prime_UTR 55.0%
! GCGGAAATGGGATCTGAAGC+TGG + chr1_2:72662443-72662462 Msa0090590:exon 55.0%
! GGCATCGGAGGCTTGCATAA+TGG + chr1_2:72662481-72662500 Msa0090590:CDS 55.0%
GGAATCGACGAAGCTGGAAG+AGG + chr1_2:72662503-72662522 Msa0090590:CDS 55.0%
AGGTCCTGTCCTTGGTCCTA+TGG + chr1_2:72662523-72662542 Msa0090590:CDS 55.0%
TGCCATGGGCCTCGTTGATA+GGG + chr1_2:72663754-72663773 Msa0090590:CDS 55.0%
!! TTTGGCTCTGGATATCCCGG+AGG + chr1_2:72664297-72664316 Msa0090590:CDS 55.0%
TGGATATCCCGGAGGTGAGT+AGG + chr1_2:72664305-72664324 Msa0090590:intron 55.0%
GTCATGACCTACTCACCTCC+GGG - chr1_2:72664315-72664334 None:intergenic 55.0%
GAGCAGAGGGTTGAAATGGC+GGG + chr1_2:72662351-72662370 Msa0090590:five_prime_UTR 55.0%
! GCGGAAATGGGATCTGAAGC+TGG + chr1_2:72662443-72662462 Msa0090590:exon 55.0%
! GGCATCGGAGGCTTGCATAA+TGG + chr1_2:72662481-72662500 Msa0090590:CDS 55.0%
GGAATCGACGAAGCTGGAAG+AGG + chr1_2:72662503-72662522 Msa0090590:CDS 55.0%
AGGTCCTGTCCTTGGTCCTA+TGG + chr1_2:72662523-72662542 Msa0090590:CDS 55.0%
TGCCATGGGCCTCGTTGATA+GGG + chr1_2:72663754-72663773 Msa0090590:CDS 55.0%
!! TTTGGCTCTGGATATCCCGG+AGG + chr1_2:72664297-72664316 Msa0090590:CDS 55.0%
TGGATATCCCGGAGGTGAGT+AGG + chr1_2:72664305-72664324 Msa0090590:intron 55.0%
GTCATGACCTACTCACCTCC+GGG - chr1_2:72664315-72664334 None:intergenic 55.0%
CAAGCCTCCGATGCCCATTC+CGG - chr1_2:72662476-72662495 None:intergenic 60.0%
GCTGGAAGAGGTCCTGTCCT+TGG + chr1_2:72662515-72662534 Msa0090590:CDS 60.0%
CTGCCATGGGCCTCGTTGAT+AGG + chr1_2:72663753-72663772 Msa0090590:CDS 60.0%
CACCCTATCAACGAGGCCCA+TGG - chr1_2:72663759-72663778 None:intergenic 60.0%
CAAGCCTCCGATGCCCATTC+CGG - chr1_2:72662476-72662495 None:intergenic 60.0%
GCTGGAAGAGGTCCTGTCCT+TGG + chr1_2:72662515-72662534 Msa0090590:CDS 60.0%
CTGCCATGGGCCTCGTTGAT+AGG + chr1_2:72663753-72663772 Msa0090590:CDS 60.0%
CACCCTATCAACGAGGCCCA+TGG - chr1_2:72663759-72663778 None:intergenic 60.0%
!! GGTTCCGGAATGGGCATCGG+AGG + chr1_2:72662469-72662488 Msa0090590:CDS 65.0%
!! GGTTCCGGAATGGGCATCGG+AGG + chr1_2:72662469-72662488 Msa0090590:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 72662331 72666412 72662331 ID=Msa0090590;Name=Msa0090590
chr1_2 mRNA 72662331 72666412 72662331 ID=Msa0090590-mRNA-1;Parent=Msa0090590;Name=Msa0090590-mRNA-1;_AED=0.10;_eAED=0.10;_QI=97|1|1|1|0.85|0.75|8|280|298
chr1_2 exon 72662331 72662421 72662331 ID=Msa0090590-mRNA-1:exon:25213;Parent=Msa0090590-mRNA-1
chr1_2 exon 72662443 72662608 72662443 ID=Msa0090590-mRNA-1:exon:25214;Parent=Msa0090590-mRNA-1
chr1_2 exon 72663496 72663619 72663496 ID=Msa0090590-mRNA-1:exon:25215;Parent=Msa0090590-mRNA-1
chr1_2 exon 72663718 72663805 72663718 ID=Msa0090590-mRNA-1:exon:25216;Parent=Msa0090590-mRNA-1
chr1_2 exon 72664014 72664151 72664014 ID=Msa0090590-mRNA-1:exon:25217;Parent=Msa0090590-mRNA-1
chr1_2 exon 72664231 72664318 72664231 ID=Msa0090590-mRNA-1:exon:25218;Parent=Msa0090590-mRNA-1
chr1_2 exon 72664418 72664538 72664418 ID=Msa0090590-mRNA-1:exon:25219;Parent=Msa0090590-mRNA-1
chr1_2 exon 72665955 72666412 72665955 ID=Msa0090590-mRNA-1:exon:25220;Parent=Msa0090590-mRNA-1
chr1_2 five_prime_UTR 72662331 72662421 72662331 ID=Msa0090590-mRNA-1:five_prime_utr;Parent=Msa0090590-mRNA-1
chr1_2 five_prime_UTR 72662443 72662448 72662443 ID=Msa0090590-mRNA-1:five_prime_utr;Parent=Msa0090590-mRNA-1
chr1_2 CDS 72662449 72662608 72662449 ID=Msa0090590-mRNA-1:cds;Parent=Msa0090590-mRNA-1
chr1_2 CDS 72663496 72663619 72663496 ID=Msa0090590-mRNA-1:cds;Parent=Msa0090590-mRNA-1
chr1_2 CDS 72663718 72663805 72663718 ID=Msa0090590-mRNA-1:cds;Parent=Msa0090590-mRNA-1
chr1_2 CDS 72664014 72664151 72664014 ID=Msa0090590-mRNA-1:cds;Parent=Msa0090590-mRNA-1
chr1_2 CDS 72664231 72664318 72664231 ID=Msa0090590-mRNA-1:cds;Parent=Msa0090590-mRNA-1
chr1_2 CDS 72664418 72664538 72664418 ID=Msa0090590-mRNA-1:cds;Parent=Msa0090590-mRNA-1
chr1_2 CDS 72665955 72666132 72665955 ID=Msa0090590-mRNA-1:cds;Parent=Msa0090590-mRNA-1
chr1_2 three_prime_UTR 72666133 72666412 72666133 ID=Msa0090590-mRNA-1:three_prime_utr;Parent=Msa0090590-mRNA-1
Gene Sequence

>Msa0090590

ATGGGATCTGAAGCTGGTATGGTTCCGGAATGGGCATCGGAGGCTTGCATAATGGGAATCGACGAAGCTGGAAGAGGTCCTGTCCTTGGTCCTATGGTCTATGGTTGTTTATACTGTCCTCTCTCCTACCAAAAAACCTTAGCTACTTTGAGTTTCGCAGATTCTAAGACACTAAAAGAAGAGAAGAGGGAAGAATTGTTTGAAACTTTGAAAGCCAATGATTCTATTGGATGGGCTGTTGATGTCATTGACCCAAAGGAACTCTCTGCCAAAATGCTCAAGAAGAATAAGATAAACTTGAATGAGATATCACATGACTCTGCCATGGGCCTCGTTGATAGGGTGCTCAAAATGGGAGTGCTTTTAACTGAGGTTTATATTGATACAGTTGGAGATCCAGGGAAATATGAAGCGAAGCTGTCTAAAAATTTTCCATCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTCAGTGGTGCAAGTATAGTTGCAAAGGTCACAAGAGATCGAGCTATAAGAGATTGGGTGCTTGATGAGTCTGCTGATAACATTCACAGGAACTTTGGCTCTGGATATCCCGGAGATCCTGCAACCAAGTCTTGGCTAGAAGATCACAAACATTCTATCTTTGGTTTTCCAACATTAGTCAGGTTTAGTTGGGGAACTTGCAGCTCTTATTTTAAAGGTGGCACTGAAGTCTTATGGGAGTCTGACTTGGATGAAGATGGTGGCAGCAATAATAATAATGGCAAGAGGCAATTGAAATTAAACAATTTGGGTTTCACCACATCCAAGAGGAGAAGCGAAGAAATAGAATCAAGTGGTAAAGGGCGTTCTAGGTTTTTTCAGGCTCGGAAACTTGAGCACCTCACTCATTTCTAA

Protein sequence

>Msa0090590

MGSEAGMVPEWASEACIMGIDEAGRGPVLGPMVYGCLYCPLSYQKTLATLSFADSKTLKEEKREELFETLKANDSIGWAVDVIDPKELSAKMLKKNKINLNEISHDSAMGLVDRVLKMGVLLTEVYIDTVGDPGKYEAKLSKNFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRAIRDWVLDESADNIHRNFGSGYPGDPATKSWLEDHKHSIFGFPTLVRFSWGTCSSYFKGGTEVLWESDLDEDGGSNNNNGKRQLKLNNLGFTTSKRRSEEIESSGKGRSRFFQARKLEHLTHF*