Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315730 | MCI23143.1 | 69.136 | 81 | 16 | 3 | 42 | 122 | 25 | 96 | 1.40e-23 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315730 | sp|Q9XQ94|GLNA2_MEDSA | 48.438 | 128 | 22 | 3 | 32 | 124 | 264 | 382 | 1.51e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002410 | Msa0315730 | 0.816656 | 4.940982e-52 | -8.615850e-47 |
| Msa0188830 | Msa0315730 | 0.807073 | 6.039887e-50 | -8.615850e-47 |
| Msa0188900 | Msa0315730 | 0.801640 | 8.186688e-49 | -8.615850e-47 |
| Msa0195820 | Msa0315730 | 0.911270 | 7.352626e-83 | -8.615850e-47 |
| Msa0237660 | Msa0315730 | 0.874967 | 4.461864e-68 | -8.615850e-47 |
| Msa0270100 | Msa0315730 | 0.810055 | 1.393803e-50 | -8.615850e-47 |
| Msa0294950 | Msa0315730 | 0.802746 | 4.846994e-49 | -8.615850e-47 |
| Msa0294960 | Msa0315730 | 0.806100 | 9.691718e-50 | -8.615850e-47 |
| Msa0315730 | Msa0357340 | 0.802003 | 6.893738e-49 | -8.615850e-47 |
| Msa0315730 | Msa0373930 | 0.804438 | 2.160004e-49 | -8.615850e-47 |
| Msa0315730 | Msa0390400 | -0.804452 | 2.145688e-49 | -8.615850e-47 |
| Msa0315730 | Msa0475490 | 0.804772 | 1.840001e-49 | -8.615850e-47 |
| Msa0315730 | Msa0555020 | 0.803269 | 3.778642e-49 | -8.615850e-47 |
| Msa0315730 | Msa0599890 | 0.803377 | 3.589530e-49 | -8.615850e-47 |
| Msa0315730 | Msa0610890 | 0.822595 | 2.178124e-53 | -8.615850e-47 |
| Msa0315730 | Msa0623870 | 0.805706 | 1.172513e-49 | -8.615850e-47 |
| Msa0315730 | Msa0623880 | 0.803716 | 3.051886e-49 | -8.615850e-47 |
| Msa0315730 | Msa0648880 | 0.810611 | 1.057690e-50 | -8.615850e-47 |
| Msa0315730 | Msa0657970 | 0.825343 | 4.937725e-54 | -8.615850e-47 |
| Msa0315730 | Msa0658570 | 0.800496 | 1.402531e-48 | -8.615850e-47 |
| Msa0315730 | Msa0691380 | 0.802645 | 5.085844e-49 | -8.615850e-47 |
| Msa0315730 | Msa0701900 | 0.810039 | 1.405168e-50 | -8.615850e-47 |
| Msa0315730 | Msa0790510 | 0.827830 | 1.259275e-54 | -8.615850e-47 |
| Msa0315730 | Msa0790600 | 0.809345 | 1.981052e-50 | -8.615850e-47 |
| Msa0315730 | Msa0876850 | -0.810660 | 1.032146e-50 | -8.615850e-47 |
| Msa0315730 | Msa0885280 | 0.811968 | 5.369955e-51 | -8.615850e-47 |
| Msa0315730 | Msa0925810 | 0.806085 | 9.760686e-50 | -8.615850e-47 |
| Msa0315730 | Msa0927290 | 0.814878 | 1.231279e-51 | -8.615850e-47 |
| Msa0315730 | Msa0935910 | 0.807476 | 4.962310e-50 | -8.615850e-47 |
| Msa0315730 | Msa0942080 | -0.801782 | 7.654284e-49 | -8.615850e-47 |
| Msa0315730 | Msa1001200 | 0.819264 | 1.272722e-52 | -8.615850e-47 |
| Msa0315730 | Msa1014540 | 0.804323 | 2.282628e-49 | -8.615850e-47 |
| Msa0315730 | Msa1075220 | -0.827968 | 1.167076e-54 | -8.615850e-47 |
| Msa0315730 | Msa1082500 | 0.807806 | 4.222517e-50 | -8.615850e-47 |
| Msa0315730 | Msa1116130 | -0.821323 | 4.292590e-53 | -8.615850e-47 |
| Msa0315730 | Msa1139000 | -0.825965 | 3.514892e-54 | -8.615850e-47 |
| Msa0315730 | Msa1162550 | -0.817396 | 3.370755e-52 | -8.615850e-47 |
| Msa0315730 | Msa1167220 | 0.808655 | 2.783849e-50 | -8.615850e-47 |
| Msa0315730 | Msa1267610 | 0.800108 | 1.682191e-48 | -8.615850e-47 |
| Msa0315730 | Msa1322890 | 0.802528 | 5.374423e-49 | -8.615850e-47 |
| Msa0315730 | Msa1357530 | 0.800471 | 1.419205e-48 | -8.615850e-47 |
| Msa0315730 | Msa1392260 | 0.807513 | 4.873853e-50 | -8.615850e-47 |
| Msa0315730 | Msa1394540 | 0.806805 | 6.882812e-50 | -8.615850e-47 |
| Msa0315730 | Msa1420290 | 0.800788 | 1.222697e-48 | -8.615850e-47 |
| Msa0315730 | Msa1451620 | -0.818752 | 1.663540e-52 | -8.615850e-47 |
| Msa0315730 | Msa1454120 | 0.801619 | 8.264932e-49 | -8.615850e-47 |
| Msa0315730 | Msa1454860 | 0.807282 | 5.454430e-50 | -8.615850e-47 |
| Msa0315730 | Msa1464940 | 0.800470 | 1.419847e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315730 | MtrunA17_Chr2g0287211 | 47.656 | 128 | 23 | 3 | 32 | 124 | 264 | 382 | 1.72e-26 | 102 |
| Msa0315730 | MtrunA17_Chr2g0287181 | 60.241 | 83 | 24 | 2 | 42 | 124 | 309 | 382 | 1.00e-23 | 94.7 |
| Msa0315730 | MtrunA17_Chr6g0479141 | 47.368 | 114 | 42 | 5 | 11 | 124 | 231 | 326 | 2.03e-20 | 85.1 |
| Msa0315730 | MtrunA17_Chr3g0110261 | 45.946 | 111 | 42 | 3 | 11 | 121 | 231 | 323 | 1.45e-18 | 80.1 |
| Msa0315730 | MtrunA17_Chr5g0434471 | 45.045 | 111 | 43 | 5 | 11 | 121 | 232 | 324 | 9.80e-18 | 77.8 |
| Msa0315730 | MtrunA17_Chr8g0364341 | 74.419 | 43 | 11 | 0 | 42 | 84 | 10 | 52 | 1.43e-15 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315730 | AT5G35630.3 | 63.855 | 83 | 21 | 3 | 42 | 124 | 311 | 384 | 8.73e-24 | 95.5 |
| Msa0315730 | AT5G35630.2 | 63.855 | 83 | 21 | 3 | 42 | 124 | 311 | 384 | 8.73e-24 | 95.5 |
| Msa0315730 | AT5G35630.1 | 63.855 | 83 | 21 | 3 | 42 | 124 | 311 | 384 | 8.73e-24 | 95.5 |
| Msa0315730 | AT5G16570.1 | 60.000 | 80 | 23 | 1 | 42 | 121 | 253 | 323 | 2.47e-21 | 88.2 |
| Msa0315730 | AT5G37600.1 | 47.368 | 114 | 42 | 4 | 11 | 124 | 231 | 326 | 6.00e-21 | 87.0 |
| Msa0315730 | AT3G17820.1 | 47.368 | 114 | 42 | 5 | 11 | 124 | 231 | 326 | 8.50e-21 | 86.7 |
| Msa0315730 | AT1G66200.1 | 45.614 | 114 | 44 | 3 | 11 | 124 | 231 | 326 | 6.25e-20 | 84.3 |
| Msa0315730 | AT1G66200.3 | 45.614 | 114 | 44 | 3 | 11 | 124 | 240 | 335 | 7.64e-20 | 84.0 |
| Msa0315730 | AT1G48470.1 | 42.105 | 114 | 48 | 4 | 11 | 124 | 231 | 326 | 2.09e-17 | 77.4 |
Find 39 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAAGCTAGTGATCATATT+TGG | 0.164932 | 2_4:-12293787 | Msa0315730:CDS |
| GAAAATAAGAATTTGGTCTA+TGG | 0.304887 | 2_4:-12293825 | Msa0315730:CDS |
| CTGCAAAACCGCATTGTTGC+TGG | 0.360494 | 2_4:-12294170 | Msa0315730:five_prime_UTR |
| TAAAGCTAGTGATCATATTT+GGG | 0.364379 | 2_4:-12293786 | Msa0315730:CDS |
| AATCGTAGAAAATAAGAATT+TGG | 0.367337 | 2_4:-12293832 | Msa0315730:intron |
| ACAAAGAGTATGAGGGAAGA+TGG | 0.386116 | 2_4:-12293337 | Msa0315730:CDS |
| TTAACAAACATACAAGTGAT+TGG | 0.390013 | 2_4:+12294229 | None:intergenic |
| CCAATAATGCTGTTATCATA+TGG | 0.403134 | 2_4:+12292756 | None:intergenic |
| GAGGGAAGATGGAGGATTTG+AGG | 0.409547 | 2_4:-12293326 | Msa0315730:CDS |
| GTGATCATATTTGGGCTTCA+AGG | 0.422348 | 2_4:-12293778 | Msa0315730:intron |
| TGTCTTGATTGTAGGTTACT+TGG | 0.424146 | 2_4:-12292808 | Msa0315730:intron |
| TAACAAACATACAAGTGATT+GGG | 0.425802 | 2_4:+12294230 | None:intergenic |
| CATAACATCGAATTCCAATC+TGG | 0.435804 | 2_4:+12294253 | None:intergenic |
| CAGGCGTCTGGCTTCGAACA+TGG | 0.479083 | 2_4:-12292781 | Msa0315730:CDS |
| TTGTAGGTTACTTGGAAGAC+AGG | 0.491910 | 2_4:-12292800 | Msa0315730:intron |
| TTACTTGGAAGACAGGCGTC+TGG | 0.507417 | 2_4:-12292793 | Msa0315730:CDS |
| TGCTGGGATGTCTGAAGCAA+TGG | 0.529796 | 2_4:-12294153 | Msa0315730:exon |
| GAATCTATCCCTTCGTCACA+AGG | 0.532243 | 2_4:-12293284 | Msa0315730:CDS |
| AGGATTTGAGGTAATAAAGA+AGG | 0.535229 | 2_4:-12293314 | Msa0315730:CDS |
| CCAATAAAATGTGTTGATGC+TGG | 0.546412 | 2_4:+12293200 | None:intergenic |
| CACATTGAAGCATACGGAGA+AGG | 0.554607 | 2_4:-12293259 | Msa0315730:CDS |
| TGCAAAACCGCATTGTTGCT+GGG | 0.560499 | 2_4:-12294169 | Msa0315730:five_prime_UTR |
| AAGAGTATGAGGGAAGATGG+AGG | 0.561153 | 2_4:-12293334 | Msa0315730:CDS |
| ACACATTACCATTGGGATGG+TGG | 0.576682 | 2_4:+12294103 | None:intergenic |
| CAATGTGGACCTTGTGACGA+AGG | 0.583073 | 2_4:+12293275 | None:intergenic |
| CCACACAGATCGAGCATCCA+CGG | 0.597316 | 2_4:+12293057 | None:intergenic |
| AAGGTCCACATTGAAGCATA+CGG | 0.598182 | 2_4:-12293265 | Msa0315730:CDS |
| AATGTGGACCTTGTGACGAA+GGG | 0.601964 | 2_4:+12293276 | None:intergenic |
| GCTGGGATGTCTGAAGCAAT+GGG | 0.603554 | 2_4:-12294152 | Msa0315730:exon |
| GAGACAGAGAAGAACAGCAA+AGG | 0.605496 | 2_4:-12293031 | Msa0315730:intron |
| ATCATTCTCCACCATCCCAA+TGG | 0.623318 | 2_4:-12294111 | Msa0315730:intron |
| CCGTGGATGCTCGATCTGTG+TGG | 0.630861 | 2_4:-12293057 | Msa0315730:CDS |
| CTTCTCCGTATGCTTCAATG+TGG | 0.632247 | 2_4:+12293260 | None:intergenic |
| CGTGGATGCTCGATCTGTGT+GGG | 0.635126 | 2_4:-12293056 | Msa0315730:CDS |
| GAAACACATTACCATTGGGA+TGG | 0.642994 | 2_4:+12294100 | None:intergenic |
| ACGGAGAAGGAAATGAGAGA+AGG | 0.644942 | 2_4:-12293246 | Msa0315730:CDS |
| GTGCAGGGAGTTGCTAACCG+TGG | 0.715157 | 2_4:-12293074 | Msa0315730:intron |
| CAGACATCCCAGCAACAATG+CGG | 0.724672 | 2_4:+12294162 | None:intergenic |
| TGTGTGTGTATTGAAATGCA+TGG | 0.735425 | 2_4:+12294297 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTCTTTTTATATGAATA+TGG | - | chr2_4:12293240-12293259 | Msa0315730:CDS | 10.0% |
| !!! | ATTAATTTTACTAATTGTTT+TGG | - | chr2_4:12293601-12293620 | Msa0315730:intron | 10.0% |
| !!! | TAATTCTTTTTATATGAATA+TGG | - | chr2_4:12293240-12293259 | Msa0315730:CDS | 10.0% |
| !!! | ATTAATTTTACTAATTGTTT+TGG | - | chr2_4:12293601-12293620 | Msa0315730:intron | 10.0% |
| !! | TAGTAAAATTAATTAGCATA+AGG | + | chr2_4:12293594-12293613 | None:intergenic | 15.0% |
| !! | ATATATCTAAATGTTAACAA+TGG | + | chr2_4:12294134-12294153 | None:intergenic | 15.0% |
| !! | TAGTAAAATTAATTAGCATA+AGG | + | chr2_4:12293594-12293613 | None:intergenic | 15.0% |
| !! | ATATATCTAAATGTTAACAA+TGG | + | chr2_4:12294134-12294153 | None:intergenic | 15.0% |
| !! | TATAAAAAGAATTACAGTGT+TGG | + | chr2_4:12293234-12293253 | None:intergenic | 20.0% |
| !! | AATCGTAGAAAATAAGAATT+TGG | - | chr2_4:12293282-12293301 | Msa0315730:CDS | 20.0% |
| !!! | TATCTTTTAATAGAATAAGC+TGG | - | chr2_4:12293501-12293520 | Msa0315730:intron | 20.0% |
| !! | TAATAAAAAATGGCAACTAA+AGG | + | chr2_4:12293571-12293590 | None:intergenic | 20.0% |
| !! | TAGCATAAGGTAATAAAAAA+TGG | + | chr2_4:12293581-12293600 | None:intergenic | 20.0% |
| !! | CCGATAAAAAAACATATATA+CGG | + | chr2_4:12294229-12294248 | None:intergenic | 20.0% |
| !!! | CCGTATATATGTTTTTTTAT+CGG | - | chr2_4:12294226-12294245 | Msa0315730:five_prime_UTR | 20.0% |
| !! | TATAAAAAGAATTACAGTGT+TGG | + | chr2_4:12293234-12293253 | None:intergenic | 20.0% |
| !! | AATCGTAGAAAATAAGAATT+TGG | - | chr2_4:12293282-12293301 | Msa0315730:CDS | 20.0% |
| !!! | TATCTTTTAATAGAATAAGC+TGG | - | chr2_4:12293501-12293520 | Msa0315730:intron | 20.0% |
| !! | TAATAAAAAATGGCAACTAA+AGG | + | chr2_4:12293571-12293590 | None:intergenic | 20.0% |
| !! | TAGCATAAGGTAATAAAAAA+TGG | + | chr2_4:12293581-12293600 | None:intergenic | 20.0% |
| !! | CCGATAAAAAAACATATATA+CGG | + | chr2_4:12294229-12294248 | None:intergenic | 20.0% |
| !!! | CCGTATATATGTTTTTTTAT+CGG | - | chr2_4:12294226-12294245 | Msa0315730:five_prime_UTR | 20.0% |
| ! | TAACAAACATACAAGTGATT+GGG | + | chr2_4:12292887-12292906 | None:intergenic | 25.0% |
| ! | TTAACAAACATACAAGTGAT+TGG | + | chr2_4:12292888-12292907 | None:intergenic | 25.0% |
| ! | TAAAAAACATTAGTGAGAGA+GGG | + | chr2_4:12293044-12293063 | None:intergenic | 25.0% |
| ! | ATAAAAAACATTAGTGAGAG+AGG | + | chr2_4:12293045-12293064 | None:intergenic | 25.0% |
| ! | GAAAATAAGAATTTGGTCTA+TGG | - | chr2_4:12293289-12293308 | Msa0315730:CDS | 25.0% |
| ! | TTAAAGCTAGTGATCATATT+TGG | - | chr2_4:12293327-12293346 | Msa0315730:CDS | 25.0% |
| ! | TAAAGCTAGTGATCATATTT+GGG | - | chr2_4:12293328-12293347 | Msa0315730:CDS | 25.0% |
| ! | TAACACATTATTGAACCAAA+AGG | + | chr2_4:12293468-12293487 | None:intergenic | 25.0% |
| !!! | CTCAATTGATTTTGGATTAA+GGG | + | chr2_4:12293538-12293557 | None:intergenic | 25.0% |
| !!! | TATAGTACCTCAATTGATTT+TGG | + | chr2_4:12293546-12293565 | None:intergenic | 25.0% |
| !!! | TTTTTAGTACAAAGAGTATG+AGG | - | chr2_4:12293769-12293788 | Msa0315730:intron | 25.0% |
| !!! | TTTTAGTACAAAGAGTATGA+GGG | - | chr2_4:12293770-12293789 | Msa0315730:intron | 25.0% |
| ! | GTAAAACATTCTTATCTAGT+TGG | - | chr2_4:12294015-12294034 | Msa0315730:intron | 25.0% |
| ! | CATATATACGGTAATACTTA+TGG | + | chr2_4:12294217-12294236 | None:intergenic | 25.0% |
| ! | TAACAAACATACAAGTGATT+GGG | + | chr2_4:12292887-12292906 | None:intergenic | 25.0% |
| ! | TTAACAAACATACAAGTGAT+TGG | + | chr2_4:12292888-12292907 | None:intergenic | 25.0% |
| ! | TAAAAAACATTAGTGAGAGA+GGG | + | chr2_4:12293044-12293063 | None:intergenic | 25.0% |
| ! | ATAAAAAACATTAGTGAGAG+AGG | + | chr2_4:12293045-12293064 | None:intergenic | 25.0% |
| ! | GAAAATAAGAATTTGGTCTA+TGG | - | chr2_4:12293289-12293308 | Msa0315730:CDS | 25.0% |
| ! | TTAAAGCTAGTGATCATATT+TGG | - | chr2_4:12293327-12293346 | Msa0315730:CDS | 25.0% |
| ! | TAAAGCTAGTGATCATATTT+GGG | - | chr2_4:12293328-12293347 | Msa0315730:CDS | 25.0% |
| ! | TAACACATTATTGAACCAAA+AGG | + | chr2_4:12293468-12293487 | None:intergenic | 25.0% |
| !!! | CTCAATTGATTTTGGATTAA+GGG | + | chr2_4:12293538-12293557 | None:intergenic | 25.0% |
| !!! | TATAGTACCTCAATTGATTT+TGG | + | chr2_4:12293546-12293565 | None:intergenic | 25.0% |
| !!! | TTTTTAGTACAAAGAGTATG+AGG | - | chr2_4:12293769-12293788 | Msa0315730:intron | 25.0% |
| !!! | TTTTAGTACAAAGAGTATGA+GGG | - | chr2_4:12293770-12293789 | Msa0315730:intron | 25.0% |
| ! | GTAAAACATTCTTATCTAGT+TGG | - | chr2_4:12294015-12294034 | Msa0315730:intron | 25.0% |
| ! | CATATATACGGTAATACTTA+TGG | + | chr2_4:12294217-12294236 | None:intergenic | 25.0% |
| AAAAAACATTAGTGAGAGAG+GGG | + | chr2_4:12293043-12293062 | None:intergenic | 30.0% | |
| !! | CCTCAATTGATTTTGGATTA+AGG | + | chr2_4:12293539-12293558 | None:intergenic | 30.0% |
| CCTTAATCCAAAATCAATTG+AGG | - | chr2_4:12293536-12293555 | Msa0315730:intron | 30.0% | |
| AATGTCAAAAAACCTGTCAT+TGG | + | chr2_4:12293672-12293691 | None:intergenic | 30.0% | |
| ! | AGGATTTGAGGTAATAAAGA+AGG | - | chr2_4:12293800-12293819 | Msa0315730:CDS | 30.0% |
| ! | CAGCATCAACACATTTTATT+GGG | - | chr2_4:12293915-12293934 | Msa0315730:intron | 30.0% |
| ! | CTTGGTATTCATTCATTTTC+AGG | + | chr2_4:12294175-12294194 | None:intergenic | 30.0% |
| ! | TTTTACCACTAAAGTGATCT+TGG | + | chr2_4:12294193-12294212 | None:intergenic | 30.0% |
| GAACATATTGTCTTGATTGT+AGG | - | chr2_4:12294298-12294317 | Msa0315730:five_prime_UTR | 30.0% | |
| AAAAAACATTAGTGAGAGAG+GGG | + | chr2_4:12293043-12293062 | None:intergenic | 30.0% | |
| !! | CCTCAATTGATTTTGGATTA+AGG | + | chr2_4:12293539-12293558 | None:intergenic | 30.0% |
| CCTTAATCCAAAATCAATTG+AGG | - | chr2_4:12293536-12293555 | Msa0315730:intron | 30.0% | |
| AATGTCAAAAAACCTGTCAT+TGG | + | chr2_4:12293672-12293691 | None:intergenic | 30.0% | |
| ! | AGGATTTGAGGTAATAAAGA+AGG | - | chr2_4:12293800-12293819 | Msa0315730:CDS | 30.0% |
| ! | CAGCATCAACACATTTTATT+GGG | - | chr2_4:12293915-12293934 | Msa0315730:intron | 30.0% |
| ! | CTTGGTATTCATTCATTTTC+AGG | + | chr2_4:12294175-12294194 | None:intergenic | 30.0% |
| ! | TTTTACCACTAAAGTGATCT+TGG | + | chr2_4:12294193-12294212 | None:intergenic | 30.0% |
| GAACATATTGTCTTGATTGT+AGG | - | chr2_4:12294298-12294317 | Msa0315730:five_prime_UTR | 30.0% | |
| TGTGTGTGTATTGAAATGCA+TGG | + | chr2_4:12292820-12292839 | None:intergenic | 35.0% | |
| CATAACATCGAATTCCAATC+TGG | + | chr2_4:12292864-12292883 | None:intergenic | 35.0% | |
| TCAAATTTGAATCCTATCCG+AGG | - | chr2_4:12293189-12293208 | Msa0315730:CDS | 35.0% | |
| ! | CTTAATTCTGTAGAGCCTTT+TGG | - | chr2_4:12293450-12293469 | Msa0315730:intron | 35.0% |
| ! | CCAATAAAATGTGTTGATGC+TGG | + | chr2_4:12293917-12293936 | None:intergenic | 35.0% |
| ! | CCAGCATCAACACATTTTAT+TGG | - | chr2_4:12293914-12293933 | Msa0315730:intron | 35.0% |
| GAATACCAAGATCACTTTAG+TGG | - | chr2_4:12294185-12294204 | Msa0315730:five_prime_UTR | 35.0% | |
| TGTCTTGATTGTAGGTTACT+TGG | - | chr2_4:12294306-12294325 | Msa0315730:five_prime_UTR | 35.0% | |
| TGTGTGTGTATTGAAATGCA+TGG | + | chr2_4:12292820-12292839 | None:intergenic | 35.0% | |
| CATAACATCGAATTCCAATC+TGG | + | chr2_4:12292864-12292883 | None:intergenic | 35.0% | |
| TCAAATTTGAATCCTATCCG+AGG | - | chr2_4:12293189-12293208 | Msa0315730:CDS | 35.0% | |
| ! | CTTAATTCTGTAGAGCCTTT+TGG | - | chr2_4:12293450-12293469 | Msa0315730:intron | 35.0% |
| ! | CCAATAAAATGTGTTGATGC+TGG | + | chr2_4:12293917-12293936 | None:intergenic | 35.0% |
| ! | CCAGCATCAACACATTTTAT+TGG | - | chr2_4:12293914-12293933 | Msa0315730:intron | 35.0% |
| GAATACCAAGATCACTTTAG+TGG | - | chr2_4:12294185-12294204 | Msa0315730:five_prime_UTR | 35.0% | |
| TGTCTTGATTGTAGGTTACT+TGG | - | chr2_4:12294306-12294325 | Msa0315730:five_prime_UTR | 35.0% | |
| !!! | AGTGGTTTGGTTTTCCAGAT+TGG | - | chr2_4:12292847-12292866 | Msa0315730:intron | 40.0% |
| GAAACACATTACCATTGGGA+TGG | + | chr2_4:12293017-12293036 | None:intergenic | 40.0% | |
| GTGGGAAACACATTACCATT+GGG | + | chr2_4:12293021-12293040 | None:intergenic | 40.0% | |
| AATAATGGCTTTCTACGTGC+AGG | - | chr2_4:12293135-12293154 | Msa0315730:intron | 40.0% | |
| ATTGAAAACGTGCACTTCCT+CGG | + | chr2_4:12293209-12293228 | None:intergenic | 40.0% | |
| GTGATCATATTTGGGCTTCA+AGG | - | chr2_4:12293336-12293355 | Msa0315730:CDS | 40.0% | |
| GGTTACGGAAAATTACCTCA+AGG | + | chr2_4:12293367-12293386 | None:intergenic | 40.0% | |
| CTACTGTGACAAGTAGGTTA+CGG | + | chr2_4:12293382-12293401 | None:intergenic | 40.0% | |
| ACCTACTTGTCACAGTAGAA+AGG | - | chr2_4:12293384-12293403 | Msa0315730:intron | 40.0% | |
| TTGAACCTTGATAGAGTGAC+TGG | - | chr2_4:12293625-12293644 | Msa0315730:intron | 40.0% | |
| ! | ACAAAGAGTATGAGGGAAGA+TGG | - | chr2_4:12293777-12293796 | Msa0315730:intron | 40.0% |
| AAGGTCCACATTGAAGCATA+CGG | - | chr2_4:12293849-12293868 | Msa0315730:intron | 40.0% | |
| TCTTATCTAGTTGGTTGTGC+AGG | - | chr2_4:12294024-12294043 | Msa0315730:intron | 40.0% | |
| CTTATCTAGTTGGTTGTGCA+GGG | - | chr2_4:12294025-12294044 | Msa0315730:intron | 40.0% | |
| TTGTAGGTTACTTGGAAGAC+AGG | - | chr2_4:12294314-12294333 | Msa0315730:five_prime_UTR | 40.0% | |
| !!! | AGTGGTTTGGTTTTCCAGAT+TGG | - | chr2_4:12292847-12292866 | Msa0315730:intron | 40.0% |
| GAAACACATTACCATTGGGA+TGG | + | chr2_4:12293017-12293036 | None:intergenic | 40.0% | |
| GTGGGAAACACATTACCATT+GGG | + | chr2_4:12293021-12293040 | None:intergenic | 40.0% | |
| AATAATGGCTTTCTACGTGC+AGG | - | chr2_4:12293135-12293154 | Msa0315730:intron | 40.0% | |
| ATTGAAAACGTGCACTTCCT+CGG | + | chr2_4:12293209-12293228 | None:intergenic | 40.0% | |
| GTGATCATATTTGGGCTTCA+AGG | - | chr2_4:12293336-12293355 | Msa0315730:CDS | 40.0% | |
| GGTTACGGAAAATTACCTCA+AGG | + | chr2_4:12293367-12293386 | None:intergenic | 40.0% | |
| CTACTGTGACAAGTAGGTTA+CGG | + | chr2_4:12293382-12293401 | None:intergenic | 40.0% | |
| ACCTACTTGTCACAGTAGAA+AGG | - | chr2_4:12293384-12293403 | Msa0315730:intron | 40.0% | |
| TTGAACCTTGATAGAGTGAC+TGG | - | chr2_4:12293625-12293644 | Msa0315730:intron | 40.0% | |
| ! | ACAAAGAGTATGAGGGAAGA+TGG | - | chr2_4:12293777-12293796 | Msa0315730:intron | 40.0% |
| AAGGTCCACATTGAAGCATA+CGG | - | chr2_4:12293849-12293868 | Msa0315730:intron | 40.0% | |
| TCTTATCTAGTTGGTTGTGC+AGG | - | chr2_4:12294024-12294043 | Msa0315730:intron | 40.0% | |
| CTTATCTAGTTGGTTGTGCA+GGG | - | chr2_4:12294025-12294044 | Msa0315730:intron | 40.0% | |
| TTGTAGGTTACTTGGAAGAC+AGG | - | chr2_4:12294314-12294333 | Msa0315730:five_prime_UTR | 40.0% | |
| ATACACACACACACACACAG+TGG | - | chr2_4:12292829-12292848 | Msa0315730:intron | 45.0% | |
| TGCAAAACCGCATTGTTGCT+GGG | - | chr2_4:12292945-12292964 | Msa0315730:intron | 45.0% | |
| ATCATTCTCCACCATCCCAA+TGG | - | chr2_4:12293003-12293022 | Msa0315730:intron | 45.0% | |
| ACACATTACCATTGGGATGG+TGG | + | chr2_4:12293014-12293033 | None:intergenic | 45.0% | |
| GGTGGGAAACACATTACCAT+TGG | + | chr2_4:12293022-12293041 | None:intergenic | 45.0% | |
| AACATTAGTGAGAGAGGGGT+GGG | + | chr2_4:12293039-12293058 | None:intergenic | 45.0% | |
| AAACATTAGTGAGAGAGGGG+TGG | + | chr2_4:12293040-12293059 | None:intergenic | 45.0% | |
| GCCTTTCTACTGTGACAAGT+AGG | + | chr2_4:12293388-12293407 | None:intergenic | 45.0% | |
| CCATTCCAGTCACTCTATCA+AGG | + | chr2_4:12293633-12293652 | None:intergenic | 45.0% | |
| CCTTGATAGAGTGACTGGAA+TGG | - | chr2_4:12293630-12293649 | Msa0315730:intron | 45.0% | |
| ! | AAGAGTATGAGGGAAGATGG+AGG | - | chr2_4:12293780-12293799 | Msa0315730:CDS | 45.0% |
| GAATCTATCCCTTCGTCACA+AGG | - | chr2_4:12293830-12293849 | Msa0315730:intron | 45.0% | |
| AATGTGGACCTTGTGACGAA+GGG | + | chr2_4:12293841-12293860 | None:intergenic | 45.0% | |
| CTTCTCCGTATGCTTCAATG+TGG | + | chr2_4:12293857-12293876 | None:intergenic | 45.0% | |
| CACATTGAAGCATACGGAGA+AGG | - | chr2_4:12293855-12293874 | Msa0315730:intron | 45.0% | |
| ACGGAGAAGGAAATGAGAGA+AGG | - | chr2_4:12293868-12293887 | Msa0315730:intron | 45.0% | |
| GAGACAGAGAAGAACAGCAA+AGG | - | chr2_4:12294083-12294102 | Msa0315730:intron | 45.0% | |
| ATACACACACACACACACAG+TGG | - | chr2_4:12292829-12292848 | Msa0315730:intron | 45.0% | |
| TGCAAAACCGCATTGTTGCT+GGG | - | chr2_4:12292945-12292964 | Msa0315730:intron | 45.0% | |
| ATCATTCTCCACCATCCCAA+TGG | - | chr2_4:12293003-12293022 | Msa0315730:intron | 45.0% | |
| ACACATTACCATTGGGATGG+TGG | + | chr2_4:12293014-12293033 | None:intergenic | 45.0% | |
| GGTGGGAAACACATTACCAT+TGG | + | chr2_4:12293022-12293041 | None:intergenic | 45.0% | |
| AACATTAGTGAGAGAGGGGT+GGG | + | chr2_4:12293039-12293058 | None:intergenic | 45.0% | |
| AAACATTAGTGAGAGAGGGG+TGG | + | chr2_4:12293040-12293059 | None:intergenic | 45.0% | |
| GCCTTTCTACTGTGACAAGT+AGG | + | chr2_4:12293388-12293407 | None:intergenic | 45.0% | |
| CCATTCCAGTCACTCTATCA+AGG | + | chr2_4:12293633-12293652 | None:intergenic | 45.0% | |
| CCTTGATAGAGTGACTGGAA+TGG | - | chr2_4:12293630-12293649 | Msa0315730:intron | 45.0% | |
| ! | AAGAGTATGAGGGAAGATGG+AGG | - | chr2_4:12293780-12293799 | Msa0315730:CDS | 45.0% |
| GAATCTATCCCTTCGTCACA+AGG | - | chr2_4:12293830-12293849 | Msa0315730:intron | 45.0% | |
| AATGTGGACCTTGTGACGAA+GGG | + | chr2_4:12293841-12293860 | None:intergenic | 45.0% | |
| CTTCTCCGTATGCTTCAATG+TGG | + | chr2_4:12293857-12293876 | None:intergenic | 45.0% | |
| CACATTGAAGCATACGGAGA+AGG | - | chr2_4:12293855-12293874 | Msa0315730:intron | 45.0% | |
| ACGGAGAAGGAAATGAGAGA+AGG | - | chr2_4:12293868-12293887 | Msa0315730:intron | 45.0% | |
| GAGACAGAGAAGAACAGCAA+AGG | - | chr2_4:12294083-12294102 | Msa0315730:intron | 45.0% | |
| !! | TATTATCAATTATTTAATAA+TGG | - | chr2_4:12293120-12293139 | Msa0315730:intron | 5.0% |
| !! | TATTATCAATTATTTAATAA+TGG | - | chr2_4:12293120-12293139 | Msa0315730:intron | 5.0% |
| CACACACACACACAGTGGTT+TGG | - | chr2_4:12292834-12292853 | Msa0315730:intron | 50.0% | |
| CTGCAAAACCGCATTGTTGC+TGG | - | chr2_4:12292944-12292963 | Msa0315730:intron | 50.0% | |
| CAGACATCCCAGCAACAATG+CGG | + | chr2_4:12292955-12292974 | None:intergenic | 50.0% | |
| ! | TGCTGGGATGTCTGAAGCAA+TGG | - | chr2_4:12292961-12292980 | Msa0315730:intron | 50.0% |
| ! | GCTGGGATGTCTGAAGCAAT+GGG | - | chr2_4:12292962-12292981 | Msa0315730:intron | 50.0% |
| AAACGTGCACTTCCTCGGAT+AGG | + | chr2_4:12293204-12293223 | None:intergenic | 50.0% | |
| GGCTTCAAGGTACATCCTTG+AGG | - | chr2_4:12293349-12293368 | Msa0315730:intron | 50.0% | |
| TAGAGTGACTGGAATGGTGC+AGG | - | chr2_4:12293636-12293655 | Msa0315730:intron | 50.0% | |
| GGATCTCACACACCAATGAC+AGG | - | chr2_4:12293657-12293676 | Msa0315730:intron | 50.0% | |
| GAGGGAAGATGGAGGATTTG+AGG | - | chr2_4:12293788-12293807 | Msa0315730:CDS | 50.0% | |
| CAATGTGGACCTTGTGACGA+AGG | + | chr2_4:12293842-12293861 | None:intergenic | 50.0% | |
| TTACTTGGAAGACAGGCGTC+TGG | - | chr2_4:12294321-12294340 | Msa0315730:five_prime_UTR | 50.0% | |
| CACACACACACACAGTGGTT+TGG | - | chr2_4:12292834-12292853 | Msa0315730:intron | 50.0% | |
| CTGCAAAACCGCATTGTTGC+TGG | - | chr2_4:12292944-12292963 | Msa0315730:intron | 50.0% | |
| CAGACATCCCAGCAACAATG+CGG | + | chr2_4:12292955-12292974 | None:intergenic | 50.0% | |
| ! | TGCTGGGATGTCTGAAGCAA+TGG | - | chr2_4:12292961-12292980 | Msa0315730:intron | 50.0% |
| ! | GCTGGGATGTCTGAAGCAAT+GGG | - | chr2_4:12292962-12292981 | Msa0315730:intron | 50.0% |
| AAACGTGCACTTCCTCGGAT+AGG | + | chr2_4:12293204-12293223 | None:intergenic | 50.0% | |
| GGCTTCAAGGTACATCCTTG+AGG | - | chr2_4:12293349-12293368 | Msa0315730:intron | 50.0% | |
| TAGAGTGACTGGAATGGTGC+AGG | - | chr2_4:12293636-12293655 | Msa0315730:intron | 50.0% | |
| GGATCTCACACACCAATGAC+AGG | - | chr2_4:12293657-12293676 | Msa0315730:intron | 50.0% | |
| GAGGGAAGATGGAGGATTTG+AGG | - | chr2_4:12293788-12293807 | Msa0315730:CDS | 50.0% | |
| CAATGTGGACCTTGTGACGA+AGG | + | chr2_4:12293842-12293861 | None:intergenic | 50.0% | |
| TTACTTGGAAGACAGGCGTC+TGG | - | chr2_4:12294321-12294340 | Msa0315730:five_prime_UTR | 50.0% | |
| CCACACAGATCGAGCATCCA+CGG | + | chr2_4:12294060-12294079 | None:intergenic | 55.0% | |
| CGTGGATGCTCGATCTGTGT+GGG | - | chr2_4:12294058-12294077 | Msa0315730:intron | 55.0% | |
| CCACACAGATCGAGCATCCA+CGG | + | chr2_4:12294060-12294079 | None:intergenic | 55.0% | |
| CGTGGATGCTCGATCTGTGT+GGG | - | chr2_4:12294058-12294077 | Msa0315730:intron | 55.0% | |
| GTGCAGGGAGTTGCTAACCG+TGG | - | chr2_4:12294040-12294059 | Msa0315730:intron | 60.0% | |
| CCGTGGATGCTCGATCTGTG+TGG | - | chr2_4:12294057-12294076 | Msa0315730:intron | 60.0% | |
| ! | CAGGCGTCTGGCTTCGAACA+TGG | - | chr2_4:12294333-12294352 | Msa0315730:five_prime_UTR | 60.0% |
| GTGCAGGGAGTTGCTAACCG+TGG | - | chr2_4:12294040-12294059 | Msa0315730:intron | 60.0% | |
| CCGTGGATGCTCGATCTGTG+TGG | - | chr2_4:12294057-12294076 | Msa0315730:intron | 60.0% | |
| ! | CAGGCGTCTGGCTTCGAACA+TGG | - | chr2_4:12294333-12294352 | Msa0315730:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 12292771 | 12294365 | 12292771 | ID=Msa0315730;Name=Msa0315730 |
| chr2_4 | mRNA | 12292771 | 12294365 | 12292771 | ID=Msa0315730-mRNA-1;Parent=Msa0315730;Name=Msa0315730-mRNA-1;_AED=0.42;_eAED=0.51;_QI=197|0.25|0.4|1|0.75|0.6|5|0|138 |
| chr2_4 | exon | 12292771 | 12292816 | 12292771 | ID=Msa0315730-mRNA-1:exon:4792;Parent=Msa0315730-mRNA-1 |
| chr2_4 | exon | 12293032 | 12293090 | 12293032 | ID=Msa0315730-mRNA-1:exon:4791;Parent=Msa0315730-mRNA-1 |
| chr2_4 | exon | 12293174 | 12293360 | 12293174 | ID=Msa0315730-mRNA-1:exon:4790;Parent=Msa0315730-mRNA-1 |
| chr2_4 | exon | 12293779 | 12293846 | 12293779 | ID=Msa0315730-mRNA-1:exon:4789;Parent=Msa0315730-mRNA-1 |
| chr2_4 | exon | 12294112 | 12294365 | 12294112 | ID=Msa0315730-mRNA-1:exon:4788;Parent=Msa0315730-mRNA-1 |
| chr2_4 | five_prime_UTR | 12294169 | 12294365 | 12294169 | ID=Msa0315730-mRNA-1:five_prime_utr;Parent=Msa0315730-mRNA-1 |
| chr2_4 | CDS | 12294112 | 12294168 | 12294112 | ID=Msa0315730-mRNA-1:cds;Parent=Msa0315730-mRNA-1 |
| chr2_4 | CDS | 12293779 | 12293846 | 12293779 | ID=Msa0315730-mRNA-1:cds;Parent=Msa0315730-mRNA-1 |
| chr2_4 | CDS | 12293174 | 12293360 | 12293174 | ID=Msa0315730-mRNA-1:cds;Parent=Msa0315730-mRNA-1 |
| chr2_4 | CDS | 12293032 | 12293090 | 12293032 | ID=Msa0315730-mRNA-1:cds;Parent=Msa0315730-mRNA-1 |
| chr2_4 | CDS | 12292771 | 12292816 | 12292771 | ID=Msa0315730-mRNA-1:cds;Parent=Msa0315730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
