AlfalfaGEDB | Msa0237660

M. sativa cultivar zhongmu-4 / Msa0237660

KEGG: K01915
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237660	XP_031120300.1	78.082	73	8	1	42	114	106	170	3.75e-28	112

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237660	sp\|Q9XQ94\|GLNA2_MEDSA	67.416	89	13	2	42	114	309	397	2.42e-28	110

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237660	A0A2Z6LSX1	68.539	89	12	2	42	114	287	375	1.13e-26	112

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0039330	Msa0237660	0.817262	3.611730e-52	-8.615850e-47
Msa0195820	Msa0237660	0.900293	8.465396e-78	-8.615850e-47
Msa0220580	Msa0237660	0.801371	9.292763e-49	-8.615850e-47
Msa0226250	Msa0237660	0.814651	1.381940e-51	-8.615850e-47
Msa0237660	Msa0315730	0.874967	4.461864e-68	-8.615850e-47
Msa0237660	Msa0333720	-0.807133	5.865351e-50	-8.615850e-47
Msa0237660	Msa0338000	0.817503	3.188351e-52	-8.615850e-47
Msa0237660	Msa0379640	0.805411	1.352102e-49	-8.615850e-47
Msa0237660	Msa0380200	0.806712	7.201228e-50	-8.615850e-47
Msa0237660	Msa0475490	0.817124	3.880345e-52	-8.615850e-47
Msa0237660	Msa0532060	0.826034	3.384953e-54	-8.615850e-47
Msa0237660	Msa0532170	0.838425	2.897433e-57	-8.615850e-47
Msa0237660	Msa0536220	0.800646	1.307197e-48	-8.615850e-47
Msa0237660	Msa0553460	0.814607	1.413490e-51	-8.615850e-47
Msa0237660	Msa0590840	0.824321	8.598918e-54	-8.615850e-47
Msa0237660	Msa0607540	0.813605	2.352228e-51	-8.615850e-47
Msa0237660	Msa0647830	0.803770	2.975352e-49	-8.615850e-47
Msa0237660	Msa0653510	0.801331	9.470091e-49	-8.615850e-47
Msa0237660	Msa0658570	0.820215	7.717453e-53	-8.615850e-47
Msa0237660	Msa0661190	-0.804511	2.085853e-49	-8.615850e-47
Msa0237660	Msa0692230	0.801154	1.029583e-48	-8.615850e-47
Msa0237660	Msa0695430	0.813271	2.785347e-51	-8.615850e-47
Msa0237660	Msa0716530	0.808475	3.041119e-50	-8.615850e-47
Msa0237660	Msa0790510	0.801841	7.441762e-49	-8.615850e-47
Msa0237660	Msa0839330	0.800577	1.350115e-48	-8.615850e-47
Msa0237660	Msa0876850	-0.806333	8.654378e-50	-8.615850e-47
Msa0237660	Msa0891040	0.801132	1.039928e-48	-8.615850e-47
Msa0237660	Msa0909620	0.835335	1.781808e-56	-8.615850e-47
Msa0237660	Msa0927290	0.819447	1.155813e-52	-8.615850e-47
Msa0237660	Msa0942080	-0.802848	4.616390e-49	-8.615850e-47
Msa0237660	Msa0990960	0.800195	1.614708e-48	-8.615850e-47
Msa0237660	Msa1001200	0.813373	2.645354e-51	-8.615850e-47
Msa0237660	Msa1041730	0.832443	9.423473e-56	-8.615850e-47
Msa0237660	Msa1054410	0.801310	9.564287e-49	-8.615850e-47
Msa0237660	Msa1075080	-0.804537	2.060152e-49	-8.615850e-47
Msa0237660	Msa1075220	-0.844606	6.814564e-59	-8.615850e-47
Msa0237660	Msa1083410	0.802297	5.998720e-49	-8.615850e-47
Msa0237660	Msa1116130	-0.845177	4.777226e-59	-8.615850e-47
Msa0237660	Msa1125080	0.823807	1.135141e-53	-8.615850e-47
Msa0237660	Msa1128160	0.803789	2.948426e-49	-8.615850e-47
Msa0237660	Msa1139000	-0.848818	4.810017e-60	-8.615850e-47
Msa0237660	Msa1162550	-0.838029	3.666119e-57	-8.615850e-47
Msa0237660	Msa1165360	0.803925	2.762694e-49	-8.615850e-47
Msa0237660	Msa1167220	0.837091	6.377435e-57	-8.615850e-47
Msa0237660	Msa1204090	0.803231	3.848279e-49	-8.615850e-47
Msa0237660	Msa1205130	0.806560	7.751123e-50	-8.615850e-47
Msa0237660	Msa1271300	0.801335	9.452653e-49	-8.615850e-47
Msa0237660	Msa1322890	0.806823	6.820457e-50	-8.615850e-47
Msa0237660	Msa1376890	0.813299	2.746215e-51	-8.615850e-47
Msa0237660	Msa1384350	0.803628	3.184081e-49	-8.615850e-47
Msa0237660	Msa1420290	0.803835	2.883447e-49	-8.615850e-47
Msa0237660	Msa1451620	-0.825894	3.653966e-54	-8.615850e-47
Msa0237660	Msa1454120	0.800508	1.394432e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237660	MtrunA17_Chr2g0287181	68.539	89	12	2	42	114	309	397	2.98e-30	112
Msa0237660	MtrunA17_Chr2g0287211	66.292	89	14	2	42	114	309	397	3.00e-29	109
Msa0237660	MtrunA17_Chr6g0479141	47.500	120	38	4	11	114	231	341	3.22e-23	92.4
Msa0237660	MtrunA17_Chr5g0434471	46.667	120	39	4	11	114	232	342	2.64e-21	87.4
Msa0237660	MtrunA17_Chr3g0110261	47.500	120	38	4	11	114	231	341	4.05e-21	86.7
Msa0237660	MtrunA17_Chr8g0364341	82.051	39	7	0	42	80	10	48	2.89e-15	65.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237660	AT5G35630.3	62.921	89	17	2	42	114	311	399	1.11e-25	100
Msa0237660	AT5G35630.2	62.921	89	17	2	42	114	311	399	1.11e-25	100
Msa0237660	AT5G35630.1	62.921	89	17	2	42	114	311	399	1.11e-25	100
Msa0237660	AT5G37600.1	50.000	120	35	4	11	114	231	341	1.70e-24	96.3
Msa0237660	AT3G17820.1	48.333	120	37	4	11	114	231	341	5.68e-24	94.7
Msa0237660	AT5G16570.1	59.551	89	20	2	42	114	253	341	2.16e-23	93.2
Msa0237660	AT1G66200.1	49.167	120	36	4	11	114	231	341	4.44e-23	92.4
Msa0237660	AT1G66200.3	49.167	120	36	4	11	114	240	350	4.86e-23	92.4
Msa0237660	AT1G48470.1	44.167	120	42	4	11	114	231	341	1.13e-20	85.9

Find 44 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTAAAGCTAGTGATCATATT+TGG	0.164932	2_2:-10925134	Msa0237660:CDS
CCATATGATAACAGCATTAT+TGG	0.266578	2_2:-10924031	Msa0237660:CDS
GAAAATAAGAATTTGGTCTA+TGG	0.304887	2_2:-10925172	Msa0237660:CDS
CTGCAAAACCGCATTGTTGC+TGG	0.360494	2_2:-10925570	Msa0237660:five_prime_UTR
TAAAGCTAGTGATCATATTT+GGG	0.364379	2_2:-10925133	Msa0237660:CDS
AATCGTAGAAAATAAGAATT+TGG	0.367337	2_2:-10925179	Msa0237660:intron
ACAAAGAGTATGAGGGAAGA+TGG	0.386116	2_2:-10924612	Msa0237660:CDS
TTAACAAACATACAAGTGAT+TGG	0.390013	2_2:+10925629	None:intergenic
CCAATAATGCTGTTATCATA+TGG	0.403134	2_2:+10924031	None:intergenic
GAGGGAAGATGGAGGATTTG+AGG	0.409547	2_2:-10924601	Msa0237660:CDS
GTGATCATATTTGGGCTTCA+AGG	0.422348	2_2:-10925125	Msa0237660:intron
TGTCTTGATTGTAGGTTACT+TGG	0.424146	2_2:-10924083	Msa0237660:intron
TAACAAACATACAAGTGATT+GGG	0.425802	2_2:+10925630	None:intergenic
TTGGTAGAGTACATTATTGT+GGG	0.427437	2_2:-10924012	Msa0237660:CDS
CATAACATTGAATTCCAATC+TGG	0.429227	2_2:+10925653	None:intergenic
CACACACACACGCAGTGGTT+TGG	0.467443	2_2:-10925680	Msa0237660:five_prime_UTR
CAGGCGTCTGGCTTCGAACA+TGG	0.479083	2_2:-10924056	Msa0237660:CDS
ATTGGTAGAGTACATTATTG+TGG	0.491515	2_2:-10924013	Msa0237660:CDS
TTGTAGGTTACTTGGAAGAC+AGG	0.491910	2_2:-10924075	Msa0237660:intron
TTACTTGGAAGACAGGCGTC+TGG	0.507417	2_2:-10924068	Msa0237660:CDS
TGCTGGGATGTCTGAAGCAA+TGG	0.529796	2_2:-10925553	Msa0237660:exon
GAATCTATCCCTTCGTCACA+AGG	0.532243	2_2:-10924559	Msa0237660:CDS
AGAGCTTCAGCCTTTAGAGT+TGG	0.534933	2_2:+10923987	None:intergenic
AGGATTTGAGGTAATAAAGA+AGG	0.535229	2_2:-10924589	Msa0237660:CDS
ATTGTGGGAGCCAACTCTAA+AGG	0.539994	2_2:-10923997	None:intergenic
CACATTGAAGCATACGGAGA+AGG	0.554607	2_2:-10924534	Msa0237660:CDS
TGCAAAACCGCATTGTTGCT+GGG	0.560499	2_2:-10925569	Msa0237660:five_prime_UTR
AAGAGTATGAGGGAAGATGG+AGG	0.561153	2_2:-10924609	Msa0237660:CDS
ACACATTACCATTGGGATGG+TGG	0.576682	2_2:+10925503	None:intergenic
CAATGTGGACCTTGTGACGA+AGG	0.583073	2_2:+10924550	None:intergenic
CCACACAGATCGAGCATCCA+CGG	0.597316	2_2:+10924332	None:intergenic
AAGGTCCACATTGAAGCATA+CGG	0.598182	2_2:-10924540	Msa0237660:CDS
AATGTGGACCTTGTGACGAA+GGG	0.601964	2_2:+10924551	None:intergenic
GCTGGGATGTCTGAAGCAAT+GGG	0.603554	2_2:-10925552	Msa0237660:exon
GAGACAGAGAAGAACAGCAA+AGG	0.605496	2_2:-10924306	Msa0237660:intron
ATCATTCTCCACCATCCCAA+TGG	0.623318	2_2:-10925511	Msa0237660:intron
CCGTGGATGCTCGATCTGTG+TGG	0.630861	2_2:-10924332	Msa0237660:CDS
CTTCTCCGTATGCTTCAATG+TGG	0.632247	2_2:+10924535	None:intergenic
CGTGGATGCTCGATCTGTGT+GGG	0.635126	2_2:-10924331	Msa0237660:CDS
GAAACACATTACCATTGGGA+TGG	0.642994	2_2:+10925500	None:intergenic
ACGGAGAAGGAAATGAGAGA+AGG	0.644942	2_2:-10924521	Msa0237660:intron
GTGCAGGGAGTTGCTAACCG+TGG	0.715157	2_2:-10924349	Msa0237660:intron
CAGACATCCCAGCAACAATG+CGG	0.724672	2_2:+10925562	None:intergenic
TGTGTGTGTATTGAAATGCA+TGG	0.735425	2_2:+10925701	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TAATTCTTTTTATATGAATA+TGG	-	chr2_2:10924526-10924545	Msa0237660:CDS	10.0%
!!!	ATTAATTTTACTAATTGTTT+TGG	-	chr2_2:10924887-10924906	Msa0237660:intron	10.0%
!!!	TAATTCTTTTTATATGAATA+TGG	-	chr2_2:10924526-10924545	Msa0237660:CDS	10.0%
!!!	ATTAATTTTACTAATTGTTT+TGG	-	chr2_2:10924887-10924906	Msa0237660:intron	10.0%
!!	TAGTAAAATTAATTAGCATA+AGG	+	chr2_2:10924880-10924899	None:intergenic	15.0%
!!	ATATATCTAAATGTTAACAA+TGG	+	chr2_2:10925492-10925511	None:intergenic	15.0%
!!	TAGTAAAATTAATTAGCATA+AGG	+	chr2_2:10924880-10924899	None:intergenic	15.0%
!!	ATATATCTAAATGTTAACAA+TGG	+	chr2_2:10925492-10925511	None:intergenic	15.0%
!!	AATAAAAAACATTAGTGAGA+GGG	+	chr2_2:10924277-10924296	None:intergenic	20.0%
!!	AAATAAAAAACATTAGTGAG+AGG	+	chr2_2:10924278-10924297	None:intergenic	20.0%
!!	TATAAAAAGAATTACAGTGT+TGG	+	chr2_2:10924520-10924539	None:intergenic	20.0%
!!	AATCGTAGAAAATAAGAATT+TGG	-	chr2_2:10924568-10924587	Msa0237660:CDS	20.0%
!!!	TATCTTTTAATAGAATAAGC+TGG	-	chr2_2:10924787-10924806	Msa0237660:intron	20.0%
!!	TAATAAAAAATGGCAACTAA+AGG	+	chr2_2:10924857-10924876	None:intergenic	20.0%
!!	TAGCATAAGGTAATAAAAAA+TGG	+	chr2_2:10924867-10924886	None:intergenic	20.0%
!!	CCGATAAAAAAACATATATA+CGG	+	chr2_2:10925587-10925606	None:intergenic	20.0%
!!!	CCGTATATATGTTTTTTTAT+CGG	-	chr2_2:10925584-10925603	Msa0237660:five_prime_UTR	20.0%
!!	AATAAAAAACATTAGTGAGA+GGG	+	chr2_2:10924277-10924296	None:intergenic	20.0%
!!	AAATAAAAAACATTAGTGAG+AGG	+	chr2_2:10924278-10924297	None:intergenic	20.0%
!!	TATAAAAAGAATTACAGTGT+TGG	+	chr2_2:10924520-10924539	None:intergenic	20.0%
!!	AATCGTAGAAAATAAGAATT+TGG	-	chr2_2:10924568-10924587	Msa0237660:CDS	20.0%
!!!	TATCTTTTAATAGAATAAGC+TGG	-	chr2_2:10924787-10924806	Msa0237660:intron	20.0%
!!	TAATAAAAAATGGCAACTAA+AGG	+	chr2_2:10924857-10924876	None:intergenic	20.0%
!!	TAGCATAAGGTAATAAAAAA+TGG	+	chr2_2:10924867-10924886	None:intergenic	20.0%
!!	CCGATAAAAAAACATATATA+CGG	+	chr2_2:10925587-10925606	None:intergenic	20.0%
!!!	CCGTATATATGTTTTTTTAT+CGG	-	chr2_2:10925584-10925603	Msa0237660:five_prime_UTR	20.0%
!	TAACAAACATACAAGTGATT+GGG	+	chr2_2:10924120-10924139	None:intergenic	25.0%
!	TTAACAAACATACAAGTGAT+TGG	+	chr2_2:10924121-10924140	None:intergenic	25.0%
!	ATAAAAAACATTAGTGAGAG+GGG	+	chr2_2:10924276-10924295	None:intergenic	25.0%
!	GAAAATAAGAATTTGGTCTA+TGG	-	chr2_2:10924575-10924594	Msa0237660:CDS	25.0%
!	TTAAAGCTAGTGATCATATT+TGG	-	chr2_2:10924613-10924632	Msa0237660:CDS	25.0%
!	TAAAGCTAGTGATCATATTT+GGG	-	chr2_2:10924614-10924633	Msa0237660:CDS	25.0%
!	TAACACATTATTGAACCAAA+AGG	+	chr2_2:10924754-10924773	None:intergenic	25.0%
!!!	CTCAATTGATTTTGGATTAA+GGG	+	chr2_2:10924824-10924843	None:intergenic	25.0%
!!!	TATAGTACCTCAATTGATTT+TGG	+	chr2_2:10924832-10924851	None:intergenic	25.0%
!!!	TTTTTAGTACAAAGAGTATG+AGG	-	chr2_2:10925127-10925146	Msa0237660:CDS	25.0%
!!!	TTTTAGTACAAAGAGTATGA+GGG	-	chr2_2:10925128-10925147	Msa0237660:CDS	25.0%
!	GTAAAACATTCTTATCTAGT+TGG	-	chr2_2:10925373-10925392	Msa0237660:intron	25.0%
!	CATATATACGGTAATACTTA+TGG	+	chr2_2:10925575-10925594	None:intergenic	25.0%
!	TAACAAACATACAAGTGATT+GGG	+	chr2_2:10924120-10924139	None:intergenic	25.0%
!	TTAACAAACATACAAGTGAT+TGG	+	chr2_2:10924121-10924140	None:intergenic	25.0%
!	ATAAAAAACATTAGTGAGAG+GGG	+	chr2_2:10924276-10924295	None:intergenic	25.0%
!	GAAAATAAGAATTTGGTCTA+TGG	-	chr2_2:10924575-10924594	Msa0237660:CDS	25.0%
!	TTAAAGCTAGTGATCATATT+TGG	-	chr2_2:10924613-10924632	Msa0237660:CDS	25.0%
!	TAAAGCTAGTGATCATATTT+GGG	-	chr2_2:10924614-10924633	Msa0237660:CDS	25.0%
!	TAACACATTATTGAACCAAA+AGG	+	chr2_2:10924754-10924773	None:intergenic	25.0%
!!!	CTCAATTGATTTTGGATTAA+GGG	+	chr2_2:10924824-10924843	None:intergenic	25.0%
!!!	TATAGTACCTCAATTGATTT+TGG	+	chr2_2:10924832-10924851	None:intergenic	25.0%
!!!	TTTTTAGTACAAAGAGTATG+AGG	-	chr2_2:10925127-10925146	Msa0237660:CDS	25.0%
!!!	TTTTAGTACAAAGAGTATGA+GGG	-	chr2_2:10925128-10925147	Msa0237660:CDS	25.0%
!	GTAAAACATTCTTATCTAGT+TGG	-	chr2_2:10925373-10925392	Msa0237660:intron	25.0%
!	CATATATACGGTAATACTTA+TGG	+	chr2_2:10925575-10925594	None:intergenic	25.0%
	CATAACATTGAATTCCAATC+TGG	+	chr2_2:10924097-10924116	None:intergenic	30.0%
!!	CCTCAATTGATTTTGGATTA+AGG	+	chr2_2:10924825-10924844	None:intergenic	30.0%
	CCTTAATCCAAAATCAATTG+AGG	-	chr2_2:10924822-10924841	Msa0237660:intron	30.0%
	AATGTCAAAAAACCTGTCAT+TGG	+	chr2_2:10924958-10924977	None:intergenic	30.0%
	AATGTCAAAAAACCTGTCAT+TGG	+	chr2_2:10924958-10924977	None:intergenic	30.0%
!	AGGATTTGAGGTAATAAAGA+AGG	-	chr2_2:10925158-10925177	Msa0237660:CDS	30.0%
!	CAGCATCAACACATTTTATT+GGG	-	chr2_2:10925273-10925292	Msa0237660:intron	30.0%
!	CTTGGTATTCATTCATTTTC+AGG	+	chr2_2:10925533-10925552	None:intergenic	30.0%
!	TTTTACCACTAAAGTGATCT+TGG	+	chr2_2:10925551-10925570	None:intergenic	30.0%
	GAACATATTGTCTTGATTGT+AGG	-	chr2_2:10925656-10925675	Msa0237660:five_prime_UTR	30.0%
	CCAATAATGCTGTTATCATA+TGG	+	chr2_2:10925719-10925738	None:intergenic	30.0%
	CCATATGATAACAGCATTAT+TGG	-	chr2_2:10925716-10925735	Msa0237660:five_prime_UTR	30.0%
	ATTGGTAGAGTACATTATTG+TGG	-	chr2_2:10925734-10925753	Msa0237660:five_prime_UTR	30.0%
	TTGGTAGAGTACATTATTGT+GGG	-	chr2_2:10925735-10925754	Msa0237660:five_prime_UTR	30.0%
	CATAACATTGAATTCCAATC+TGG	+	chr2_2:10924097-10924116	None:intergenic	30.0%
!!	CCTCAATTGATTTTGGATTA+AGG	+	chr2_2:10924825-10924844	None:intergenic	30.0%
	CCTTAATCCAAAATCAATTG+AGG	-	chr2_2:10924822-10924841	Msa0237660:intron	30.0%
	AATGTCAAAAAACCTGTCAT+TGG	+	chr2_2:10924958-10924977	None:intergenic	30.0%
	AATGTCAAAAAACCTGTCAT+TGG	+	chr2_2:10924958-10924977	None:intergenic	30.0%
!	AGGATTTGAGGTAATAAAGA+AGG	-	chr2_2:10925158-10925177	Msa0237660:CDS	30.0%
!	CAGCATCAACACATTTTATT+GGG	-	chr2_2:10925273-10925292	Msa0237660:intron	30.0%
!	CTTGGTATTCATTCATTTTC+AGG	+	chr2_2:10925533-10925552	None:intergenic	30.0%
!	TTTTACCACTAAAGTGATCT+TGG	+	chr2_2:10925551-10925570	None:intergenic	30.0%
	GAACATATTGTCTTGATTGT+AGG	-	chr2_2:10925656-10925675	Msa0237660:five_prime_UTR	30.0%
	CCAATAATGCTGTTATCATA+TGG	+	chr2_2:10925719-10925738	None:intergenic	30.0%
	CCATATGATAACAGCATTAT+TGG	-	chr2_2:10925716-10925735	Msa0237660:five_prime_UTR	30.0%
	ATTGGTAGAGTACATTATTG+TGG	-	chr2_2:10925734-10925753	Msa0237660:five_prime_UTR	30.0%
	TTGGTAGAGTACATTATTGT+GGG	-	chr2_2:10925735-10925754	Msa0237660:five_prime_UTR	30.0%
	TGTGTGTGTATTGAAATGCA+TGG	+	chr2_2:10924049-10924068	None:intergenic	35.0%
	TCAAATTTGAATCCTATCCG+AGG	-	chr2_2:10924475-10924494	Msa0237660:intron	35.0%
!	CTTAATTCTGTAGAGCCTTT+TGG	-	chr2_2:10924736-10924755	Msa0237660:intron	35.0%
!	CCAATAAAATGTGTTGATGC+TGG	+	chr2_2:10925275-10925294	None:intergenic	35.0%
!	CCAGCATCAACACATTTTAT+TGG	-	chr2_2:10925272-10925291	Msa0237660:intron	35.0%
	GAATACCAAGATCACTTTAG+TGG	-	chr2_2:10925543-10925562	Msa0237660:CDS	35.0%
	TGTCTTGATTGTAGGTTACT+TGG	-	chr2_2:10925664-10925683	Msa0237660:five_prime_UTR	35.0%
	TGTGTGTGTATTGAAATGCA+TGG	+	chr2_2:10924049-10924068	None:intergenic	35.0%
	TCAAATTTGAATCCTATCCG+AGG	-	chr2_2:10924475-10924494	Msa0237660:intron	35.0%
!	CTTAATTCTGTAGAGCCTTT+TGG	-	chr2_2:10924736-10924755	Msa0237660:intron	35.0%
!	CCAATAAAATGTGTTGATGC+TGG	+	chr2_2:10925275-10925294	None:intergenic	35.0%
!	CCAGCATCAACACATTTTAT+TGG	-	chr2_2:10925272-10925291	Msa0237660:intron	35.0%
	GAATACCAAGATCACTTTAG+TGG	-	chr2_2:10925543-10925562	Msa0237660:CDS	35.0%
	TGTCTTGATTGTAGGTTACT+TGG	-	chr2_2:10925664-10925683	Msa0237660:five_prime_UTR	35.0%
!!!	AGTGGTTTGGTTTTCCAGAT+TGG	-	chr2_2:10924080-10924099	Msa0237660:intron	40.0%
	GAAACACATTACCATTGGGA+TGG	+	chr2_2:10924250-10924269	None:intergenic	40.0%
	GTGGGAAACACATTACCATT+GGG	+	chr2_2:10924254-10924273	None:intergenic	40.0%
	AAAACATTAGTGAGAGGGGT+GGG	+	chr2_2:10924272-10924291	None:intergenic	40.0%
	AAAAACATTAGTGAGAGGGG+TGG	+	chr2_2:10924273-10924292	None:intergenic	40.0%
	AATAATGGCTTTCTACGTGC+AGG	-	chr2_2:10924421-10924440	Msa0237660:intron	40.0%
	ATTGAAAACGTGCACTTCCT+CGG	+	chr2_2:10924495-10924514	None:intergenic	40.0%
	GTGATCATATTTGGGCTTCA+AGG	-	chr2_2:10924622-10924641	Msa0237660:intron	40.0%
	GGTTACGGAAAATTACCTCA+AGG	+	chr2_2:10924653-10924672	None:intergenic	40.0%
	CTACTGTGACAAGTAGGTTA+CGG	+	chr2_2:10924668-10924687	None:intergenic	40.0%
	ACCTACTTGTCACAGTAGAA+AGG	-	chr2_2:10924670-10924689	Msa0237660:intron	40.0%
	TTGAACCTTGATAGAGTGAC+TGG	-	chr2_2:10924911-10924930	Msa0237660:intron	40.0%
!	ACAAAGAGTATGAGGGAAGA+TGG	-	chr2_2:10925135-10925154	Msa0237660:CDS	40.0%
	AAGGTCCACATTGAAGCATA+CGG	-	chr2_2:10925207-10925226	Msa0237660:intron	40.0%
	TCTTATCTAGTTGGTTGTGC+AGG	-	chr2_2:10925382-10925401	Msa0237660:intron	40.0%
	CTTATCTAGTTGGTTGTGCA+GGG	-	chr2_2:10925383-10925402	Msa0237660:intron	40.0%
	TTGTAGGTTACTTGGAAGAC+AGG	-	chr2_2:10925672-10925691	Msa0237660:five_prime_UTR	40.0%
!!!	AGTGGTTTGGTTTTCCAGAT+TGG	-	chr2_2:10924080-10924099	Msa0237660:intron	40.0%
	GAAACACATTACCATTGGGA+TGG	+	chr2_2:10924250-10924269	None:intergenic	40.0%
	GTGGGAAACACATTACCATT+GGG	+	chr2_2:10924254-10924273	None:intergenic	40.0%
	AAAACATTAGTGAGAGGGGT+GGG	+	chr2_2:10924272-10924291	None:intergenic	40.0%
	AAAAACATTAGTGAGAGGGG+TGG	+	chr2_2:10924273-10924292	None:intergenic	40.0%
	AATAATGGCTTTCTACGTGC+AGG	-	chr2_2:10924421-10924440	Msa0237660:intron	40.0%
	ATTGAAAACGTGCACTTCCT+CGG	+	chr2_2:10924495-10924514	None:intergenic	40.0%
	GTGATCATATTTGGGCTTCA+AGG	-	chr2_2:10924622-10924641	Msa0237660:intron	40.0%
	GGTTACGGAAAATTACCTCA+AGG	+	chr2_2:10924653-10924672	None:intergenic	40.0%
	CTACTGTGACAAGTAGGTTA+CGG	+	chr2_2:10924668-10924687	None:intergenic	40.0%
	ACCTACTTGTCACAGTAGAA+AGG	-	chr2_2:10924670-10924689	Msa0237660:intron	40.0%
	TTGAACCTTGATAGAGTGAC+TGG	-	chr2_2:10924911-10924930	Msa0237660:intron	40.0%
!	ACAAAGAGTATGAGGGAAGA+TGG	-	chr2_2:10925135-10925154	Msa0237660:CDS	40.0%
	AAGGTCCACATTGAAGCATA+CGG	-	chr2_2:10925207-10925226	Msa0237660:intron	40.0%
	TCTTATCTAGTTGGTTGTGC+AGG	-	chr2_2:10925382-10925401	Msa0237660:intron	40.0%
	CTTATCTAGTTGGTTGTGCA+GGG	-	chr2_2:10925383-10925402	Msa0237660:intron	40.0%
	TTGTAGGTTACTTGGAAGAC+AGG	-	chr2_2:10925672-10925691	Msa0237660:five_prime_UTR	40.0%
	TGCAAAACCGCATTGTTGCT+GGG	-	chr2_2:10924178-10924197	Msa0237660:intron	45.0%
	ATCATTCTCCACCATCCCAA+TGG	-	chr2_2:10924236-10924255	Msa0237660:intron	45.0%
	ACACATTACCATTGGGATGG+TGG	+	chr2_2:10924247-10924266	None:intergenic	45.0%
	GGTGGGAAACACATTACCAT+TGG	+	chr2_2:10924255-10924274	None:intergenic	45.0%
	GCCTTTCTACTGTGACAAGT+AGG	+	chr2_2:10924674-10924693	None:intergenic	45.0%
	CCATTCCAGTCACTCTATCA+AGG	+	chr2_2:10924919-10924938	None:intergenic	45.0%
	CCTTGATAGAGTGACTGGAA+TGG	-	chr2_2:10924916-10924935	Msa0237660:intron	45.0%
	GTCATGAATCGTAGAGTGAC+TGG	-	chr2_2:10924983-10925002	Msa0237660:intron	45.0%
	GAATCGTAGAGTGACTGGAA+TGG	-	chr2_2:10924988-10925007	Msa0237660:intron	45.0%
!	AAGAGTATGAGGGAAGATGG+AGG	-	chr2_2:10925138-10925157	Msa0237660:CDS	45.0%
	GAATCTATCCCTTCGTCACA+AGG	-	chr2_2:10925188-10925207	Msa0237660:intron	45.0%
	AATGTGGACCTTGTGACGAA+GGG	+	chr2_2:10925199-10925218	None:intergenic	45.0%
	CTTCTCCGTATGCTTCAATG+TGG	+	chr2_2:10925215-10925234	None:intergenic	45.0%
	CACATTGAAGCATACGGAGA+AGG	-	chr2_2:10925213-10925232	Msa0237660:intron	45.0%
	ACGGAGAAGGAAATGAGAGA+AGG	-	chr2_2:10925226-10925245	Msa0237660:intron	45.0%
	GAGACAGAGAAGAACAGCAA+AGG	-	chr2_2:10925441-10925460	Msa0237660:intron	45.0%
	TGCAAAACCGCATTGTTGCT+GGG	-	chr2_2:10924178-10924197	Msa0237660:intron	45.0%
	ATCATTCTCCACCATCCCAA+TGG	-	chr2_2:10924236-10924255	Msa0237660:intron	45.0%
	ACACATTACCATTGGGATGG+TGG	+	chr2_2:10924247-10924266	None:intergenic	45.0%
	GGTGGGAAACACATTACCAT+TGG	+	chr2_2:10924255-10924274	None:intergenic	45.0%
	GCCTTTCTACTGTGACAAGT+AGG	+	chr2_2:10924674-10924693	None:intergenic	45.0%
	CCATTCCAGTCACTCTATCA+AGG	+	chr2_2:10924919-10924938	None:intergenic	45.0%
	CCTTGATAGAGTGACTGGAA+TGG	-	chr2_2:10924916-10924935	Msa0237660:intron	45.0%
	GTCATGAATCGTAGAGTGAC+TGG	-	chr2_2:10924983-10925002	Msa0237660:intron	45.0%
	GAATCGTAGAGTGACTGGAA+TGG	-	chr2_2:10924988-10925007	Msa0237660:intron	45.0%
!	AAGAGTATGAGGGAAGATGG+AGG	-	chr2_2:10925138-10925157	Msa0237660:CDS	45.0%
	GAATCTATCCCTTCGTCACA+AGG	-	chr2_2:10925188-10925207	Msa0237660:intron	45.0%
	AATGTGGACCTTGTGACGAA+GGG	+	chr2_2:10925199-10925218	None:intergenic	45.0%
	CTTCTCCGTATGCTTCAATG+TGG	+	chr2_2:10925215-10925234	None:intergenic	45.0%
	CACATTGAAGCATACGGAGA+AGG	-	chr2_2:10925213-10925232	Msa0237660:intron	45.0%
	ACGGAGAAGGAAATGAGAGA+AGG	-	chr2_2:10925226-10925245	Msa0237660:intron	45.0%
	GAGACAGAGAAGAACAGCAA+AGG	-	chr2_2:10925441-10925460	Msa0237660:intron	45.0%
!!	TATTATCAATTATTTAATAA+TGG	-	chr2_2:10924406-10924425	Msa0237660:intron	5.0%
!!	TATTATCAATTATTTAATAA+TGG	-	chr2_2:10924406-10924425	Msa0237660:intron	5.0%
	CTGCAAAACCGCATTGTTGC+TGG	-	chr2_2:10924177-10924196	Msa0237660:intron	50.0%
	CAGACATCCCAGCAACAATG+CGG	+	chr2_2:10924188-10924207	None:intergenic	50.0%
!	TGCTGGGATGTCTGAAGCAA+TGG	-	chr2_2:10924194-10924213	Msa0237660:intron	50.0%
!	GCTGGGATGTCTGAAGCAAT+GGG	-	chr2_2:10924195-10924214	Msa0237660:intron	50.0%
	AAACGTGCACTTCCTCGGAT+AGG	+	chr2_2:10924490-10924509	None:intergenic	50.0%
	GGCTTCAAGGTACATCCTTG+AGG	-	chr2_2:10924635-10924654	Msa0237660:intron	50.0%
	TAGAGTGACTGGAATGGTGC+AGG	-	chr2_2:10924922-10924941	Msa0237660:intron	50.0%
	GGATCTCACACACCAATGAC+AGG	-	chr2_2:10924943-10924962	Msa0237660:intron	50.0%
	TAGAGTGACTGGAATGGTGC+AGG	-	chr2_2:10924922-10924941	Msa0237660:intron	50.0%
	GGATCTCACACACCAATGAC+AGG	-	chr2_2:10924943-10924962	Msa0237660:intron	50.0%
	GAGGGAAGATGGAGGATTTG+AGG	-	chr2_2:10925146-10925165	Msa0237660:CDS	50.0%
	CAATGTGGACCTTGTGACGA+AGG	+	chr2_2:10925200-10925219	None:intergenic	50.0%
	TTACTTGGAAGACAGGCGTC+TGG	-	chr2_2:10925679-10925698	Msa0237660:five_prime_UTR	50.0%
	CTGCAAAACCGCATTGTTGC+TGG	-	chr2_2:10924177-10924196	Msa0237660:intron	50.0%
	CAGACATCCCAGCAACAATG+CGG	+	chr2_2:10924188-10924207	None:intergenic	50.0%
!	TGCTGGGATGTCTGAAGCAA+TGG	-	chr2_2:10924194-10924213	Msa0237660:intron	50.0%
!	GCTGGGATGTCTGAAGCAAT+GGG	-	chr2_2:10924195-10924214	Msa0237660:intron	50.0%
	AAACGTGCACTTCCTCGGAT+AGG	+	chr2_2:10924490-10924509	None:intergenic	50.0%
	GGCTTCAAGGTACATCCTTG+AGG	-	chr2_2:10924635-10924654	Msa0237660:intron	50.0%
	TAGAGTGACTGGAATGGTGC+AGG	-	chr2_2:10924922-10924941	Msa0237660:intron	50.0%
	GGATCTCACACACCAATGAC+AGG	-	chr2_2:10924943-10924962	Msa0237660:intron	50.0%
	TAGAGTGACTGGAATGGTGC+AGG	-	chr2_2:10924922-10924941	Msa0237660:intron	50.0%
	GGATCTCACACACCAATGAC+AGG	-	chr2_2:10924943-10924962	Msa0237660:intron	50.0%
	GAGGGAAGATGGAGGATTTG+AGG	-	chr2_2:10925146-10925165	Msa0237660:CDS	50.0%
	CAATGTGGACCTTGTGACGA+AGG	+	chr2_2:10925200-10925219	None:intergenic	50.0%
	TTACTTGGAAGACAGGCGTC+TGG	-	chr2_2:10925679-10925698	Msa0237660:five_prime_UTR	50.0%
	ACACACACACACACACGCAG+TGG	-	chr2_2:10924062-10924081	Msa0237660:CDS	55.0%
	CACACACACACGCAGTGGTT+TGG	-	chr2_2:10924067-10924086	Msa0237660:CDS	55.0%
	CCACACAGATCGAGCATCCA+CGG	+	chr2_2:10925418-10925437	None:intergenic	55.0%
	CGTGGATGCTCGATCTGTGT+GGG	-	chr2_2:10925416-10925435	Msa0237660:intron	55.0%
	ACACACACACACACACGCAG+TGG	-	chr2_2:10924062-10924081	Msa0237660:CDS	55.0%
	CACACACACACGCAGTGGTT+TGG	-	chr2_2:10924067-10924086	Msa0237660:CDS	55.0%
	CCACACAGATCGAGCATCCA+CGG	+	chr2_2:10925418-10925437	None:intergenic	55.0%
	CGTGGATGCTCGATCTGTGT+GGG	-	chr2_2:10925416-10925435	Msa0237660:intron	55.0%
	GTGCAGGGAGTTGCTAACCG+TGG	-	chr2_2:10925398-10925417	Msa0237660:intron	60.0%
	CCGTGGATGCTCGATCTGTG+TGG	-	chr2_2:10925415-10925434	Msa0237660:intron	60.0%
!	CAGGCGTCTGGCTTCGAACA+TGG	-	chr2_2:10925691-10925710	Msa0237660:five_prime_UTR	60.0%
	GTGCAGGGAGTTGCTAACCG+TGG	-	chr2_2:10925398-10925417	Msa0237660:intron	60.0%
	CCGTGGATGCTCGATCTGTG+TGG	-	chr2_2:10925415-10925434	Msa0237660:intron	60.0%
!	CAGGCGTCTGGCTTCGAACA+TGG	-	chr2_2:10925691-10925710	Msa0237660:five_prime_UTR	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	10924000	10925769	10924000	ID=Msa0237660;Name=Msa0237660
chr2_2	mRNA	10924000	10925769	10924000	ID=Msa0237660-mRNA-1;Parent=Msa0237660;Name=Msa0237660-mRNA-1;_AED=0.45;_eAED=0.54;_QI=201\|0.25\|0.4\|1\|1\|1\|5\|0\|129
chr2_2	exon	10924000	10924091	10924000	ID=Msa0237660-mRNA-1:exon:4806;Parent=Msa0237660-mRNA-1
chr2_2	exon	10924307	10924365	10924307	ID=Msa0237660-mRNA-1:exon:4805;Parent=Msa0237660-mRNA-1
chr2_2	exon	10924522	10924635	10924522	ID=Msa0237660-mRNA-1:exon:4804;Parent=Msa0237660-mRNA-1
chr2_2	exon	10925126	10925193	10925126	ID=Msa0237660-mRNA-1:exon:4803;Parent=Msa0237660-mRNA-1
chr2_2	exon	10925512	10925769	10925512	ID=Msa0237660-mRNA-1:exon:4802;Parent=Msa0237660-mRNA-1
chr2_2	five_prime_UTR	10925569	10925769	10925569	ID=Msa0237660-mRNA-1:five_prime_utr;Parent=Msa0237660-mRNA-1
chr2_2	CDS	10925512	10925568	10925512	ID=Msa0237660-mRNA-1:cds;Parent=Msa0237660-mRNA-1
chr2_2	CDS	10925126	10925193	10925126	ID=Msa0237660-mRNA-1:cds;Parent=Msa0237660-mRNA-1
chr2_2	CDS	10924522	10924635	10924522	ID=Msa0237660-mRNA-1:cds;Parent=Msa0237660-mRNA-1
chr2_2	CDS	10924307	10924365	10924307	ID=Msa0237660-mRNA-1:cds;Parent=Msa0237660-mRNA-1
chr2_2	CDS	10924000	10924091	10924000	ID=Msa0237660-mRNA-1:cds;Parent=Msa0237660-mRNA-1

Gene Sequence

>Msa0237660

ATGTCTGAAGCAATGGGTAGTTTCTATGATCTAGTATCATTCTCCACCATCCCAATGAAAATAAGAATTTGGTCTATGGCTTCTGCAAATTGTGTTAAAGCTAGTGATCATATTTGGGCTTCAAGTACAAAGAGTATGAGGGAAGATGGAGGATTTGAGGTAATAAAGAAGGCAATTTCGAATCTATCCCTTCGTCACAAGGTCCACATTGAAGCATACGGAGAAGGAAATGAGAGAAGGGAGTTGCTAACCGTGGATGCTCGATCTGTGTGGGAAGAGACAGAGAAGAACAGCAAAGGTTACTTGGAAGACAGGCGTCTGGCTTCGAACATGGATCCATATGATAACAGCATTATTGGTAGAGTACATTATTGTGGGAGCCAACTCTAA

Protein sequence

>Msa0237660

MSEAMGSFYDLVSFSTIPMKIRIWSMASANCVKASDHIWASSTKSMREDGGFEVIKKAISNLSLRHKVHIEAYGEGNERRELLTVDARSVWEETEKNSKGYLEDRRLASNMDPYDNSIIGRVHYCGSQL*