Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379470 | XP_003602848.1 | 93.913 | 345 | 20 | 1 | 1 | 345 | 1 | 344 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379470 | G7J4G3 | 93.913 | 345 | 20 | 1 | 1 | 345 | 1 | 344 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038940 | Msa0379470 | 0.802061 | 6.707619e-49 | -8.615850e-47 |
| Msa0048510 | Msa0379470 | 0.800232 | 1.587341e-48 | -8.615850e-47 |
| Msa0077560 | Msa0379470 | 0.839075 | 1.968144e-57 | -8.615850e-47 |
| Msa0133150 | Msa0379470 | 0.801474 | 8.850595e-49 | -8.615850e-47 |
| Msa0181650 | Msa0379470 | 0.813972 | 1.952744e-51 | -8.615850e-47 |
| Msa0190730 | Msa0379470 | 0.816997 | 4.143076e-52 | -8.615850e-47 |
| Msa0204950 | Msa0379470 | 0.808018 | 3.806759e-50 | -8.615850e-47 |
| Msa0233020 | Msa0379470 | 0.801701 | 7.953085e-49 | -8.615850e-47 |
| Msa0367150 | Msa0379470 | 0.804479 | 2.117902e-49 | -8.615850e-47 |
| Msa0373500 | Msa0379470 | 0.806052 | 9.921069e-50 | -8.615850e-47 |
| Msa0379470 | Msa0380490 | 0.836860 | 7.306475e-57 | -8.615850e-47 |
| Msa0379470 | Msa0404130 | 0.833713 | 4.554482e-56 | -8.615850e-47 |
| Msa0379470 | Msa0409830 | 0.825689 | 4.087484e-54 | -8.615850e-47 |
| Msa0379470 | Msa0430000 | 0.826861 | 2.150420e-54 | -8.615850e-47 |
| Msa0379470 | Msa0432010 | 0.840490 | 8.426265e-58 | -8.615850e-47 |
| Msa0379470 | Msa0459740 | 0.822586 | 2.188668e-53 | -8.615850e-47 |
| Msa0379470 | Msa0481890 | 0.857777 | 1.295184e-62 | -8.615850e-47 |
| Msa0379470 | Msa0500570 | 0.831531 | 1.583368e-55 | -8.615850e-47 |
| Msa0379470 | Msa0502510 | 0.821355 | 4.218580e-53 | -8.615850e-47 |
| Msa0379470 | Msa0621710 | 0.802349 | 5.851367e-49 | -8.615850e-47 |
| Msa0379470 | Msa0624900 | 0.802359 | 5.824094e-49 | -8.615850e-47 |
| Msa0379470 | Msa0709440 | 0.859540 | 3.853459e-63 | -8.615850e-47 |
| Msa0379470 | Msa0754430 | 0.822104 | 2.831825e-53 | -8.615850e-47 |
| Msa0379470 | Msa0754450 | 0.812178 | 4.832302e-51 | -8.615850e-47 |
| Msa0379470 | Msa1035610 | 0.803609 | 3.212093e-49 | -8.615850e-47 |
| Msa0379470 | Msa1081390 | 0.802208 | 6.256050e-49 | -8.615850e-47 |
| Msa0379470 | Msa1084530 | 0.852426 | 4.652185e-61 | -8.615850e-47 |
| Msa0379470 | Msa1125820 | 0.857785 | 1.287838e-62 | -8.615850e-47 |
| Msa0379470 | Msa1125990 | 0.856910 | 2.336252e-62 | -8.615850e-47 |
| Msa0379470 | Msa1171290 | 0.861619 | 9.032502e-64 | -8.615850e-47 |
| Msa0379470 | Msa1192570 | 0.803940 | 2.742581e-49 | -8.615850e-47 |
| Msa0379470 | Msa1218820 | 0.815752 | 7.870871e-52 | -8.615850e-47 |
| Msa0379470 | Msa1254540 | 0.810989 | 8.762850e-51 | -8.615850e-47 |
| Msa0379470 | Msa1343170 | 0.816643 | 4.975816e-52 | -8.615850e-47 |
| Msa0379470 | Msa1366150 | 0.807231 | 5.593056e-50 | -8.615850e-47 |
| Msa0379470 | Msa1368750 | 0.840925 | 6.480263e-58 | -8.615850e-47 |
| Msa0379470 | Msa1374790 | 0.836087 | 1.149304e-56 | -8.615850e-47 |
| Msa0379470 | Msa1384150 | 0.818393 | 2.006313e-52 | -8.615850e-47 |
| Msa0379470 | Msa1387440 | 0.824155 | 9.407839e-54 | -8.615850e-47 |
| Msa0379470 | Msa1429070 | 0.817679 | 2.910644e-52 | -8.615850e-47 |
| Msa0379470 | Msa1451820 | 0.837767 | 4.279693e-57 | -8.615850e-47 |
| Msa0249850 | Msa0379470 | 0.802615 | 5.158257e-49 | -8.615850e-47 |
| Msa0269210 | Msa0379470 | 0.820303 | 7.367735e-53 | -8.615850e-47 |
| Msa0281470 | Msa0379470 | 0.812653 | 3.804456e-51 | -8.615850e-47 |
| Msa0320600 | Msa0379470 | 0.806662 | 7.377299e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379470 | MtrunA17_Chr3g0132461 | 93.913 | 345 | 20 | 1 | 1 | 345 | 1 | 344 | 0.0 | 548 |
| Msa0379470 | MtrunA17_Chr5g0426721 | 49.025 | 359 | 126 | 6 | 1 | 341 | 1 | 320 | 3.02e-78 | 243 |
| Msa0379470 | MtrunA17_Chr5g0426661 | 45.395 | 152 | 46 | 2 | 192 | 341 | 45 | 161 | 1.92e-14 | 70.5 |
| Msa0379470 | MtrunA17_Chr8g0337301 | 82.051 | 39 | 5 | 1 | 99 | 137 | 1 | 37 | 2.03e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379470 | AT4G09060.1 | 41.441 | 333 | 154 | 6 | 15 | 345 | 45 | 338 | 2.28e-62 | 202 |
| Msa0379470 | AT4G09060.2 | 39.444 | 360 | 155 | 8 | 15 | 348 | 45 | 367 | 3.06e-59 | 195 |
| Msa0379470 | AT1G14680.1 | 41.667 | 288 | 139 | 8 | 1 | 285 | 19 | 280 | 2.26e-55 | 183 |
Find 84 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCACTGGGCTACTTGTTT+TGG | 0.124089 | 3_1:+80602219 | None:intergenic |
| AGGGAAGCGTTGATGGAATT+TGG | 0.124394 | 3_1:-80604649 | Msa0379470:CDS |
| GTTGGAGGAGTTGATCTTTC+TGG | 0.156099 | 3_1:+80604904 | None:intergenic |
| ACACTAAAAGGGTTTGAATT+AGG | 0.165118 | 3_1:+80605130 | None:intergenic |
| TGATTCTACATATGCATTTC+TGG | 0.168736 | 3_1:-80603235 | Msa0379470:CDS |
| TTGAATTGGGTGACACTAAA+AGG | 0.199068 | 3_1:+80605118 | None:intergenic |
| TTTCTGAAGCGACTTGATTT+TGG | 0.213795 | 3_1:+80602926 | None:intergenic |
| TCCACTGAGCTACTTGTTCT+TGG | 0.215760 | 3_1:+80601928 | None:intergenic |
| GTTGGATGAAGGGCAGAATT+TGG | 0.224805 | 3_1:-80604701 | Msa0379470:CDS |
| TTCAAAAGAATTAGTTGAAT+TGG | 0.231495 | 3_1:+80605104 | None:intergenic |
| TTCCTTTCCTTCTGCTCCAC+TGG | 0.254723 | 3_1:+80602205 | None:intergenic |
| GAATTTATCTGACTCTCTTT+TGG | 0.280362 | 3_1:-80603280 | Msa0379470:CDS |
| AGCATTGAAGAAGTTTGATT+TGG | 0.299098 | 3_1:-80604758 | Msa0379470:CDS |
| ACAGGCTCAGTCGCGTGTTT+TGG | 0.300454 | 3_1:-80604602 | Msa0379470:CDS |
| TTGAAAATGAGTCATGTAAA+AGG | 0.302001 | 3_1:-80603203 | Msa0379470:CDS |
| CACTAAAAGGGTTTGAATTA+GGG | 0.305080 | 3_1:+80605131 | None:intergenic |
| GTATGTTTCTCGCCGGAGTT+GGG | 0.324190 | 3_1:+80602178 | None:intergenic |
| GGTATGTTTCTCGCCGGAGT+TGG | 0.339529 | 3_1:+80602177 | None:intergenic |
| TCAAAAGAATTAGTTGAATT+GGG | 0.344145 | 3_1:+80605105 | None:intergenic |
| CTACAGTCTGTGGAGTTATA+TGG | 0.352021 | 3_1:+80601850 | None:intergenic |
| GTATGTTTCTCGCCTGAACT+TGG | 0.360266 | 3_1:+80602680 | None:intergenic |
| GTTGATCTTTCTGGTTCAAT+TGG | 0.361089 | 3_1:+80604913 | None:intergenic |
| TTATATGGTAAGGGTGATAA+TGG | 0.368869 | 3_1:+80601865 | None:intergenic |
| TTGCGTTGTATGAACATGAT+AGG | 0.368898 | 3_1:-80604669 | Msa0379470:CDS |
| CTTCTTCTACATGCACAGTT+GGG | 0.379853 | 3_1:-80603308 | Msa0379470:CDS |
| GGGAAGCGTTGATGGAATTT+GGG | 0.384313 | 3_1:-80604648 | Msa0379470:CDS |
| TCCTTTCCTTCTGCTCCACT+GGG | 0.387253 | 3_1:+80602206 | None:intergenic |
| GGGATGATGAATTTCAAATT+CGG | 0.394019 | 3_1:+80605051 | None:intergenic |
| ACATGATAGGGAAGCGTTGA+TGG | 0.413511 | 3_1:-80604656 | Msa0379470:CDS |
| GAAAGGGATGACCCAAGTTC+AGG | 0.419002 | 3_1:-80602692 | Msa0379470:CDS |
| ATCTAACTCGCCTTGGAAGA+AGG | 0.424488 | 3_1:+80602650 | None:intergenic |
| GGGAAATCCTCCTAGTGAAA+TGG | 0.435106 | 3_1:-80605021 | Msa0379470:CDS |
| GTCTGTGGAGTTATATGGTA+AGG | 0.437588 | 3_1:+80601855 | None:intergenic |
| TCTTCTTCTACATGCACAGT+TGG | 0.448220 | 3_1:-80603309 | Msa0379470:CDS |
| GATCTTTCTGGTTCAATTGG+AGG | 0.449109 | 3_1:+80604916 | None:intergenic |
| GGCTGCTGAGTATGTGGAAC+TGG | 0.451776 | 3_1:-80603182 | Msa0379470:intron |
| CCGAAACCTTGTGGCGTTGG+AGG | 0.452249 | 3_1:+80604889 | None:intergenic |
| TCAATTGGAGGAGAAGAGAA+AGG | 0.453678 | 3_1:+80604928 | None:intergenic |
| TGAATTGGGTGACACTAAAA+GGG | 0.462597 | 3_1:+80605119 | None:intergenic |
| AATTTGTAGCTTAGAGCCAT+TGG | 0.470537 | 3_1:-80602973 | Msa0379470:intron |
| CGCCTTGGCAGATCGGCTGC+TGG | 0.478298 | 3_1:+80602156 | None:intergenic |
| CGCCTTGGAAGAAGGGCTGC+TGG | 0.481985 | 3_1:+80602658 | None:intergenic |
| TGTCAGAAATTGTTGGATGA+AGG | 0.493834 | 3_1:-80604712 | Msa0379470:CDS |
| AAACCGAAACCTTGTGGCGT+TGG | 0.495159 | 3_1:+80604886 | None:intergenic |
| AGCTGATGAACGTGAACGAC+AGG | 0.501328 | 3_1:-80604620 | Msa0379470:CDS |
| TGTTGAACAAGGCGAACAAA+AGG | 0.502215 | 3_1:-80602733 | Msa0379470:CDS |
| GAAAGGAACCACCCCAACTC+CGG | 0.512929 | 3_1:-80602190 | Msa0379470:CDS |
| AAGTAGCCCAGTGGAGCAGA+AGG | 0.514228 | 3_1:-80602212 | Msa0379470:CDS |
| TCTAACTCGCCTTGGAAGAA+GGG | 0.523478 | 3_1:+80602651 | None:intergenic |
| TGCGTTGTATGAACATGATA+GGG | 0.532202 | 3_1:-80604668 | Msa0379470:CDS |
| TCTAACTCGCCTTGGCAGAT+CGG | 0.540039 | 3_1:+80602149 | None:intergenic |
| GCCCAGTGGAGCAGAAGGAA+AGG | 0.542432 | 3_1:-80602207 | Msa0379470:CDS |
| CAAGCATCAAAACATTTCAA+TGG | 0.542860 | 3_1:-80604533 | Msa0379470:intron |
| TATGTTTCTCGCCTGAACTT+GGG | 0.543626 | 3_1:+80602681 | None:intergenic |
| TTCTTCTACATGCACAGTTG+GGG | 0.545979 | 3_1:-80603307 | Msa0379470:CDS |
| CAAGTCGCTTCAGAAAGATA+AGG | 0.550339 | 3_1:-80602919 | Msa0379470:CDS |
| TGAAGGGCAGAATTTGGAAA+AGG | 0.552431 | 3_1:-80604695 | Msa0379470:CDS |
| TCTTCACAAAGCTGAGGAGG+AGG | 0.555115 | 3_1:-80602880 | Msa0379470:intron |
| GTCAGAAATTGTTGGATGAA+GGG | 0.555361 | 3_1:-80604711 | Msa0379470:CDS |
| GTAAAAGGCTGCTGAGTATG+TGG | 0.556401 | 3_1:-80603188 | Msa0379470:CDS |
| ACAAGGCGAACAAAAGGCTA+TGG | 0.557371 | 3_1:-80602727 | Msa0379470:CDS |
| GACAAAACTCTATGAACCAA+TGG | 0.560149 | 3_1:+80602957 | None:intergenic |
| GTTTCTCGCCGGAGTTGGGG+TGG | 0.571301 | 3_1:+80602182 | None:intergenic |
| TACCAGCAGCCCTTCTTCCA+AGG | 0.572211 | 3_1:-80602660 | Msa0379470:intron |
| CTTACGTATTCTACAGTCTG+TGG | 0.573268 | 3_1:+80601822 | None:intergenic |
| ATGGAAGAAATGCAAGGAAA+GGG | 0.574271 | 3_1:-80602708 | Msa0379470:CDS |
| TACCAGCAGCCGATCTGCCA+AGG | 0.583286 | 3_1:-80602158 | Msa0379470:intron |
| TGTGGATATTCTACAGTCTG+TGG | 0.588698 | 3_1:+80601840 | None:intergenic |
| TATGGAAGAAATGCAAGGAA+AGG | 0.589608 | 3_1:-80602709 | Msa0379470:CDS |
| TAATCGTCCATTTCACTAGG+AGG | 0.593363 | 3_1:+80605014 | None:intergenic |
| TATGTTTCTCGCCGGAGTTG+GGG | 0.594478 | 3_1:+80602179 | None:intergenic |
| TAATCTTCACAAAGCTGAGG+AGG | 0.595349 | 3_1:-80602883 | Msa0379470:CDS |
| TCTGTGGAGTTATATGGTAA+GGG | 0.601908 | 3_1:+80601856 | None:intergenic |
| ATGTAATCGTCCATTTCACT+AGG | 0.603612 | 3_1:+80605011 | None:intergenic |
| GAACAAGTAGCTCAGTGGAG+AGG | 0.603667 | 3_1:-80601924 | Msa0379470:CDS |
| TCAACTCCTCCAACGCCACA+AGG | 0.620149 | 3_1:-80604895 | Msa0379470:intron |
| TCCAAGAACAAGTAGCTCAG+TGG | 0.636811 | 3_1:-80601929 | Msa0379470:CDS |
| GCTGCTGGTATGTTTCTCGC+CGG | 0.638632 | 3_1:+80602171 | None:intergenic |
| GGAGAATCAGAGACTTGCGT+CGG | 0.645431 | 3_1:-80604737 | Msa0379470:CDS |
| GTCGGCGTGTCAGAAATTGT+TGG | 0.645734 | 3_1:-80604719 | Msa0379470:CDS |
| AAGGCTATGGAAGAAATGCA+AGG | 0.653172 | 3_1:-80602714 | Msa0379470:CDS |
| AATTAATCTTCACAAAGCTG+AGG | 0.656091 | 3_1:-80602886 | Msa0379470:CDS |
| TGAAAACAATATGTTGAACA+AGG | 0.658608 | 3_1:-80602744 | Msa0379470:CDS |
| TCCCAAAACAAGTAGCCCAG+TGG | 0.700178 | 3_1:-80602221 | Msa0379470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTATCATAAAAAAAG+AGG | + | chr3_1:80602156-80602175 | None:intergenic | 10.0% |
| !! | TAATAATTTGAGTAATAATT+CGG | - | chr3_1:80602599-80602618 | Msa0379470:intron | 10.0% |
| !!! | AAATTTTATCAAATCAATAA+AGG | - | chr3_1:80602910-80602929 | Msa0379470:CDS | 10.0% |
| !! | AAACAATATTTCAAAAATAG+GGG | + | chr3_1:80602519-80602538 | None:intergenic | 15.0% |
| !! | CAAACAATATTTCAAAAATA+GGG | + | chr3_1:80602520-80602539 | None:intergenic | 15.0% |
| !! | TCAAACAATATTTCAAAAAT+AGG | + | chr3_1:80602521-80602540 | None:intergenic | 15.0% |
| !! | AAAAATAGATTATAATCACA+GGG | + | chr3_1:80603355-80603374 | None:intergenic | 15.0% |
| !! | AAAAAATAGATTATAATCAC+AGG | + | chr3_1:80603356-80603375 | None:intergenic | 15.0% |
| !! | TTACCATATTAATATGTAAA+GGG | + | chr3_1:80603608-80603627 | None:intergenic | 15.0% |
| !!! | TTAAATTATTTTTGACAAGA+AGG | - | chr3_1:80604389-80604408 | Msa0379470:intron | 15.0% |
| !! | ATATAAGTAAATATCATCAT+CGG | + | chr3_1:80604973-80604992 | None:intergenic | 15.0% |
| !! | TCAAAAGAATTAGTTGAATT+GGG | + | chr3_1:80601910-80601929 | None:intergenic | 20.0% |
| !! | TTCAAAAGAATTAGTTGAAT+TGG | + | chr3_1:80601911-80601930 | None:intergenic | 20.0% |
| !!! | TTGACTTAATTTTGTTGTTT+TGG | - | chr3_1:80602203-80602222 | Msa0379470:CDS | 20.0% |
| !! | AACAATATTTCAAAAATAGG+GGG | + | chr3_1:80602518-80602537 | None:intergenic | 20.0% |
| !! | TCTTAAATCATCAAAATAAG+TGG | + | chr3_1:80602552-80602571 | None:intergenic | 20.0% |
| !! | TACTATATAGATTAGTAGTT+TGG | - | chr3_1:80602797-80602816 | Msa0379470:intron | 20.0% |
| !!! | TATTTTAGCAATTAAGAGAA+TGG | - | chr3_1:80603109-80603128 | Msa0379470:intron | 20.0% |
| !! | ATTTCAAAATAGTAACCTAT+GGG | + | chr3_1:80603228-80603247 | None:intergenic | 20.0% |
| !! | AATTTCAAAATAGTAACCTA+TGG | + | chr3_1:80603229-80603248 | None:intergenic | 20.0% |
| !! | TTTCCCTTTACATATTAATA+TGG | - | chr3_1:80603602-80603621 | Msa0379470:intron | 20.0% |
| !! | GTTACCATATTAATATGTAA+AGG | + | chr3_1:80603609-80603628 | None:intergenic | 20.0% |
| !!! | TTGTAAATTATAGTTCCTTT+TGG | - | chr3_1:80603634-80603653 | Msa0379470:intron | 20.0% |
| !! | GAATAATCACTAAAGATTAA+TGG | + | chr3_1:80603891-80603910 | None:intergenic | 20.0% |
| !! | GAAATGGTTCAAAAAAATTA+GGG | + | chr3_1:80604174-80604193 | None:intergenic | 20.0% |
| !! | TGAAATGGTTCAAAAAAATT+AGG | + | chr3_1:80604175-80604194 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | + | chr3_1:80604580-80604599 | None:intergenic | 20.0% |
| !! | TTCAGTATAATTATTTGTGT+CGG | - | chr3_1:80604605-80604624 | Msa0379470:CDS | 20.0% |
| !! | AAATATACATATAATCCATC+AGG | + | chr3_1:80605002-80605021 | None:intergenic | 20.0% |
| !!! | TTGAATTAGGGTTTTTGATT+GGG | + | chr3_1:80601872-80601891 | None:intergenic | 25.0% |
| !! | TTTGAATTAGGGTTTTTGAT+TGG | + | chr3_1:80601873-80601892 | None:intergenic | 25.0% |
| !!! | AAGGTATTTTTGTGATTCTT+GGG | + | chr3_1:80602053-80602072 | None:intergenic | 25.0% |
| ! | TAATTTGAGTAATAATTCGG+TGG | - | chr3_1:80602602-80602621 | Msa0379470:intron | 25.0% |
| ! | TTCCTTCAAAACAAAGATAA+CGG | + | chr3_1:80602871-80602890 | None:intergenic | 25.0% |
| ! | TAAAGGAATCAAAATCAGTT+TGG | - | chr3_1:80602927-80602946 | Msa0379470:CDS | 25.0% |
| ! | TGTAAACTAGAAAATGTAAG+AGG | - | chr3_1:80603177-80603196 | Msa0379470:intron | 25.0% |
| !!! | AAAATGTAAGAGGAGTATTT+TGG | - | chr3_1:80603187-80603206 | Msa0379470:CDS | 25.0% |
| ! | TGAAATTTCATTATCTGATG+TGG | - | chr3_1:80603242-80603261 | Msa0379470:CDS | 25.0% |
| !!! | AATCTATTTTTTGTTTCCAG+TGG | - | chr3_1:80603364-80603383 | Msa0379470:intron | 25.0% |
| ! | TTGAAAATGAGTCATGTAAA+AGG | - | chr3_1:80603809-80603828 | Msa0379470:intron | 25.0% |
| ! | ATTAATGGCAAGATGAAAAA+TGG | + | chr3_1:80603876-80603895 | None:intergenic | 25.0% |
| !! | AACCATTTCATTTCTTTTGA+TGG | - | chr3_1:80604185-80604204 | Msa0379470:intron | 25.0% |
| ! | AACCATCAAAAGAAATGAAA+TGG | + | chr3_1:80604190-80604209 | None:intergenic | 25.0% |
| ! | TGAAAACAATATGTTGAACA+AGG | - | chr3_1:80604268-80604287 | Msa0379470:intron | 25.0% |
| ! | AGATACACATGATAACTATT+AGG | + | chr3_1:80604709-80604728 | None:intergenic | 25.0% |
| ! | AATTCAAATAGAATGAGATC+TGG | + | chr3_1:80604745-80604764 | None:intergenic | 25.0% |
| CACTAAAAGGGTTTGAATTA+GGG | + | chr3_1:80601884-80601903 | None:intergenic | 30.0% | |
| ACACTAAAAGGGTTTGAATT+AGG | + | chr3_1:80601885-80601904 | None:intergenic | 30.0% | |
| GGGATGATGAATTTCAAATT+CGG | + | chr3_1:80601964-80601983 | None:intergenic | 30.0% | |
| AAATTCATCATCCCCAAAAA+TGG | - | chr3_1:80601970-80601989 | Msa0379470:intron | 30.0% | |
| AATTCATCATCCCCAAAAAT+GGG | - | chr3_1:80601971-80601990 | Msa0379470:intron | 30.0% | |
| !!! | GAAGGTATTTTTGTGATTCT+TGG | + | chr3_1:80602054-80602073 | None:intergenic | 30.0% |
| ! | AGCATTGAAGAAGTTTGATT+TGG | - | chr3_1:80602254-80602273 | Msa0379470:intron | 30.0% |
| !! | AAGGAATTTGCTTTTGTTGA+TGG | - | chr3_1:80602440-80602459 | Msa0379470:intron | 30.0% |
| CAAGCATCAAAACATTTCAA+TGG | - | chr3_1:80602479-80602498 | Msa0379470:intron | 30.0% | |
| !!! | AGAGTTTTGCTAGCTTTAAA+TGG | - | chr3_1:80602637-80602656 | Msa0379470:intron | 30.0% |
| !!! | GAGTTTTGCTAGCTTTAAAT+GGG | - | chr3_1:80602638-80602657 | Msa0379470:intron | 30.0% |
| CAAGGAAAGATTAATCTGAT+GGG | + | chr3_1:80602692-80602711 | None:intergenic | 30.0% | |
| CATCAGATTAATCTTTCCTT+GGG | - | chr3_1:80602691-80602710 | Msa0379470:CDS | 30.0% | |
| ACATTAAACAATCTTACCCA+AGG | + | chr3_1:80602710-80602729 | None:intergenic | 30.0% | |
| GGTAAGATTGTTTAATGTGT+TGG | - | chr3_1:80602712-80602731 | Msa0379470:CDS | 30.0% | |
| TATAGATTAGTAGTTTGGAG+CGG | - | chr3_1:80602802-80602821 | Msa0379470:intron | 30.0% | |
| !!! | ATCCGTTATCTTTGTTTTGA+AGG | - | chr3_1:80602866-80602885 | Msa0379470:intron | 30.0% |
| !!! | ATCTTTGTTTTGAAGGAATC+AGG | - | chr3_1:80602873-80602892 | Msa0379470:intron | 30.0% |
| !!! | TCTTTGTTTTGAAGGAATCA+GGG | - | chr3_1:80602874-80602893 | Msa0379470:intron | 30.0% |
| GAATCAAAATCAGTTTGGAA+GGG | - | chr3_1:80602932-80602951 | Msa0379470:CDS | 30.0% | |
| ! | TTTTTCCAATTCTCCAGTTT+GGG | + | chr3_1:80602968-80602987 | None:intergenic | 30.0% |
| !!! | TTTTTTCCAATTCTCCAGTT+TGG | + | chr3_1:80602969-80602988 | None:intergenic | 30.0% |
| ATAGCAAAACTGAGTCTTTA+TGG | + | chr3_1:80603092-80603111 | None:intergenic | 30.0% | |
| ! | GATTGGTTGAAACTTGAAAT+CGG | - | chr3_1:80603147-80603166 | Msa0379470:intron | 30.0% |
| TTGTACTAACTCAAGAACTA+TGG | - | chr3_1:80603455-80603474 | Msa0379470:intron | 30.0% | |
| !! | AACTATGGATTGACTTTTGT+CGG | - | chr3_1:80603470-80603489 | Msa0379470:intron | 30.0% |
| GTGATAGAACTTCATTAACA+CGG | + | chr3_1:80603520-80603539 | None:intergenic | 30.0% | |
| ! | GAATTTATCTGACTCTCTTT+TGG | - | chr3_1:80603732-80603751 | Msa0379470:intron | 30.0% |
| TGATTCTACATATGCATTTC+TGG | - | chr3_1:80603777-80603796 | Msa0379470:intron | 30.0% | |
| AAGATGAAAAATGGAGAATG+AGG | + | chr3_1:80603867-80603886 | None:intergenic | 30.0% | |
| GTGAAATATGACTAGAAGTA+TGG | + | chr3_1:80603965-80603984 | None:intergenic | 30.0% | |
| AATTAATCTTCACAAAGCTG+AGG | - | chr3_1:80604126-80604145 | Msa0379470:intron | 30.0% | |
| ATACCTTATCTAACTTAGCA+TGG | - | chr3_1:80604219-80604238 | Msa0379470:intron | 30.0% | |
| ATACCATGCTAAGTTAGATA+AGG | + | chr3_1:80604225-80604244 | None:intergenic | 30.0% | |
| TAAAAAAATCTAACTCGCCT+TGG | + | chr3_1:80604372-80604391 | None:intergenic | 30.0% | |
| TCTCAAATTATTAGTGGTGT+CGG | + | chr3_1:80604574-80604593 | None:intergenic | 30.0% | |
| ! | ATAATTATTTGTGTCGGTGT+CGG | - | chr3_1:80604611-80604630 | Msa0379470:CDS | 30.0% |
| TTATCATGTGTATCTTCTGT+TGG | - | chr3_1:80604714-80604733 | Msa0379470:CDS | 30.0% | |
| TTTAAAAATCTAACTCGCCT+TGG | + | chr3_1:80604874-80604893 | None:intergenic | 30.0% | |
| AGTAAATATCATCATCGGAA+AGG | + | chr3_1:80604968-80604987 | None:intergenic | 30.0% | |
| TACTTATATAAGTTGCCTGA+TGG | - | chr3_1:80604984-80605003 | Msa0379470:CDS | 30.0% | |
| AGTCAAATATATATGAGACG+TGG | + | chr3_1:80605036-80605055 | None:intergenic | 30.0% | |
| TTATATGGTAAGGGTGATAA+TGG | + | chr3_1:80605150-80605169 | None:intergenic | 30.0% | |
| TGAATTGGGTGACACTAAAA+GGG | + | chr3_1:80601896-80601915 | None:intergenic | 35.0% | |
| TTGAATTGGGTGACACTAAA+AGG | + | chr3_1:80601897-80601916 | None:intergenic | 35.0% | |
| !! | TAGGAGGATTTCCCATTTTT+GGG | + | chr3_1:80601985-80602004 | None:intergenic | 35.0% |
| ATGTAATCGTCCATTTCACT+AGG | + | chr3_1:80602004-80602023 | None:intergenic | 35.0% | |
| !! | GTTGATCTTTCTGGTTCAAT+TGG | + | chr3_1:80602102-80602121 | None:intergenic | 35.0% |
| !!! | TGTTTTGGATTAGTCTGAAG+CGG | - | chr3_1:80602218-80602237 | Msa0379470:CDS | 35.0% |
| TGTCAGAAATTGTTGGATGA+AGG | - | chr3_1:80602300-80602319 | Msa0379470:intron | 35.0% | |
| GTCAGAAATTGTTGGATGAA+GGG | - | chr3_1:80602301-80602320 | Msa0379470:intron | 35.0% | |
| TTGCGTTGTATGAACATGAT+AGG | - | chr3_1:80602343-80602362 | Msa0379470:intron | 35.0% | |
| TGCGTTGTATGAACATGATA+GGG | - | chr3_1:80602344-80602363 | Msa0379470:intron | 35.0% | |
| CCAAGGAAAGATTAATCTGA+TGG | + | chr3_1:80602693-80602712 | None:intergenic | 35.0% | |
| CCATCAGATTAATCTTTCCT+TGG | - | chr3_1:80602690-80602709 | Msa0379470:CDS | 35.0% | |
| ! | TTCAAATTGAAGGCGTAACA+CGG | + | chr3_1:80602763-80602782 | None:intergenic | 35.0% |
| GGAATCAAAATCAGTTTGGA+AGG | - | chr3_1:80602931-80602950 | Msa0379470:CDS | 35.0% | |
| ! | TTTTCCAATTCTCCAGTTTG+GGG | + | chr3_1:80602967-80602986 | None:intergenic | 35.0% |
| GGAGAATTGGAAAAAACGAA+TGG | - | chr3_1:80602973-80602992 | Msa0379470:intron | 35.0% | |
| CAGATCATTAGCGATTGTTT+GGG | + | chr3_1:80603009-80603028 | None:intergenic | 35.0% | |
| TCAGATCATTAGCGATTGTT+TGG | + | chr3_1:80603010-80603029 | None:intergenic | 35.0% | |
| TTATACTGCAGTGCTTCTTA+AGG | - | chr3_1:80603043-80603062 | Msa0379470:intron | 35.0% | |
| TATACTGCAGTGCTTCTTAA+GGG | - | chr3_1:80603044-80603063 | Msa0379470:intron | 35.0% | |
| AGAATGGAAGTCATTTGATG+TGG | - | chr3_1:80603125-80603144 | Msa0379470:intron | 35.0% | |
| AACTTAAGTCACTTACCCAT+AGG | - | chr3_1:80603210-80603229 | Msa0379470:CDS | 35.0% | |
| GAACTTAATTCACTCACCAT+AGG | - | chr3_1:80603274-80603293 | Msa0379470:CDS | 35.0% | |
| ! | ATTTCTTGTTGTGTTACCAC+TGG | + | chr3_1:80603383-80603402 | None:intergenic | 35.0% |
| ATGGGAAAAGCAAATATCTG+GGG | + | chr3_1:80603673-80603692 | None:intergenic | 35.0% | |
| CATGGGAAAAGCAAATATCT+GGG | + | chr3_1:80603674-80603693 | None:intergenic | 35.0% | |
| TCATGGGAAAAGCAAATATC+TGG | + | chr3_1:80603675-80603694 | None:intergenic | 35.0% | |
| !! | GATATTTGCTTTTCCCATGA+AGG | - | chr3_1:80603675-80603694 | Msa0379470:intron | 35.0% |
| AATTTGTAGCTTAGAGCCAT+TGG | - | chr3_1:80604039-80604058 | Msa0379470:intron | 35.0% | |
| GACAAAACTCTATGAACCAA+TGG | + | chr3_1:80604058-80604077 | None:intergenic | 35.0% | |
| !!! | TTTCTGAAGCGACTTGATTT+TGG | + | chr3_1:80604089-80604108 | None:intergenic | 35.0% |
| TATGGAAGAAATGCAAGGAA+AGG | - | chr3_1:80604303-80604322 | Msa0379470:intron | 35.0% | |
| ATGGAAGAAATGCAAGGAAA+GGG | - | chr3_1:80604304-80604323 | Msa0379470:intron | 35.0% | |
| ATGCTATGTACTCGAATATG+TGG | - | chr3_1:80604441-80604460 | Msa0379470:intron | 35.0% | |
| TGCTATGTACTCGAATATGT+GGG | - | chr3_1:80604442-80604461 | Msa0379470:intron | 35.0% | |
| GATAAAATGAATTGCAACCC+TGG | + | chr3_1:80604939-80604958 | None:intergenic | 35.0% | |
| TCTGTGGAGTTATATGGTAA+GGG | + | chr3_1:80605159-80605178 | None:intergenic | 35.0% | |
| !! | AGGAGGATTTCCCATTTTTG+GGG | + | chr3_1:80601984-80602003 | None:intergenic | 40.0% |
| ! | CTAGGAGGATTTCCCATTTT+TGG | + | chr3_1:80601986-80602005 | None:intergenic | 40.0% |
| TAATCGTCCATTTCACTAGG+AGG | + | chr3_1:80602001-80602020 | None:intergenic | 40.0% | |
| !!! | GAGAAAGGTTTTGTTCACGA+AGG | + | chr3_1:80602072-80602091 | None:intergenic | 40.0% |
| TCAATTGGAGGAGAAGAGAA+AGG | + | chr3_1:80602087-80602106 | None:intergenic | 40.0% | |
| !! | GATCTTTCTGGTTCAATTGG+AGG | + | chr3_1:80602099-80602118 | None:intergenic | 40.0% |
| TGAAGGGCAGAATTTGGAAA+AGG | - | chr3_1:80602317-80602336 | Msa0379470:intron | 40.0% | |
| CCACTGACACTTCAAATTGA+AGG | + | chr3_1:80602773-80602792 | None:intergenic | 40.0% | |
| ! | CCTTCAATTTGAAGTGTCAG+TGG | - | chr3_1:80602770-80602789 | Msa0379470:intron | 40.0% |
| TCAAAATCAGTTTGGAAGGG+AGG | - | chr3_1:80602935-80602954 | Msa0379470:CDS | 40.0% | |
| CAAAATCAGTTTGGAAGGGA+GGG | - | chr3_1:80602936-80602955 | Msa0379470:CDS | 40.0% | |
| AAATCCCCAAACTGGAGAAT+TGG | - | chr3_1:80602960-80602979 | Msa0379470:CDS | 40.0% | |
| ATCATTAGCGATTGTTTGGG+AGG | + | chr3_1:80603006-80603025 | None:intergenic | 40.0% | |
| CGCTAATGATCTGAGTTAGT+CGG | - | chr3_1:80603016-80603035 | Msa0379470:intron | 40.0% | |
| ATACTGCAGTGCTTCTTAAG+GGG | - | chr3_1:80603045-80603064 | Msa0379470:intron | 40.0% | |
| TGCTTCTTAAGGGGATATCA+AGG | - | chr3_1:80603054-80603073 | Msa0379470:intron | 40.0% | |
| GCTTCTTAAGGGGATATCAA+GGG | - | chr3_1:80603055-80603074 | Msa0379470:intron | 40.0% | |
| GGAAGTCATTTGATGTGGAT+TGG | - | chr3_1:80603130-80603149 | Msa0379470:intron | 40.0% | |
| GGTCAACATTGACAACCAAA+AGG | + | chr3_1:80603652-80603671 | None:intergenic | 40.0% | |
| !! | TTTGCTTTTCCCATGAAGGT+TGG | - | chr3_1:80603679-80603698 | Msa0379470:intron | 40.0% |
| GAAGAAGAACCAACCTTCAT+GGG | + | chr3_1:80603691-80603710 | None:intergenic | 40.0% | |
| AGAAGAAGAACCAACCTTCA+TGG | + | chr3_1:80603692-80603711 | None:intergenic | 40.0% | |
| TCTTCTTCTACATGCACAGT+TGG | - | chr3_1:80603703-80603722 | Msa0379470:intron | 40.0% | |
| CTTCTTCTACATGCACAGTT+GGG | - | chr3_1:80603704-80603723 | Msa0379470:intron | 40.0% | |
| TTCTTCTACATGCACAGTTG+GGG | - | chr3_1:80603705-80603724 | Msa0379470:intron | 40.0% | |
| AAAATGGAGAATGAGGTTGC+AGG | + | chr3_1:80603860-80603879 | None:intergenic | 40.0% | |
| CAAGTCGCTTCAGAAAGATA+AGG | - | chr3_1:80604093-80604112 | Msa0379470:intron | 40.0% | |
| TAATCTTCACAAAGCTGAGG+AGG | - | chr3_1:80604129-80604148 | Msa0379470:intron | 40.0% | |
| TAACTTAGCATGGTATGTGC+AGG | - | chr3_1:80604229-80604248 | Msa0379470:intron | 40.0% | |
| TGTTGAACAAGGCGAACAAA+AGG | - | chr3_1:80604279-80604298 | Msa0379470:intron | 40.0% | |
| AAGGCTATGGAAGAAATGCA+AGG | - | chr3_1:80604298-80604317 | Msa0379470:intron | 40.0% | |
| TATGTTTCTCGCCTGAACTT+GGG | + | chr3_1:80604334-80604353 | None:intergenic | 40.0% | |
| GCTATGTACTCGAATATGTG+GGG | - | chr3_1:80604443-80604462 | Msa0379470:intron | 40.0% | |
| CTATGTACTCGAATATGTGG+GGG | - | chr3_1:80604444-80604463 | Msa0379470:intron | 40.0% | |
| TATGTACTCGAATATGTGGG+GGG | - | chr3_1:80604445-80604464 | Msa0379470:intron | 40.0% | |
| ATCGGCAACACTATGAAGTA+CGG | + | chr3_1:80604666-80604685 | None:intergenic | 40.0% | |
| ACCCAGATGGGTAATATCAT+CGG | + | chr3_1:80604684-80604703 | None:intergenic | 40.0% | |
| AACTATTAGGCAACCCAGAT+GGG | + | chr3_1:80604696-80604715 | None:intergenic | 40.0% | |
| TAACTATTAGGCAACCCAGA+TGG | + | chr3_1:80604697-80604716 | None:intergenic | 40.0% | |
| GTCTGTGGAGTTATATGGTA+AGG | + | chr3_1:80605160-80605179 | None:intergenic | 40.0% | |
| CTACAGTCTGTGGAGTTATA+TGG | + | chr3_1:80605165-80605184 | None:intergenic | 40.0% | |
| TGTGGATATTCTACAGTCTG+TGG | + | chr3_1:80605175-80605194 | None:intergenic | 40.0% | |
| CTTACGTATTCTACAGTCTG+TGG | + | chr3_1:80605193-80605212 | None:intergenic | 40.0% | |
| GGGAAATCCTCCTAGTGAAA+TGG | - | chr3_1:80601991-80602010 | Msa0379470:intron | 45.0% | |
| ! | GTTGGAGGAGTTGATCTTTC+TGG | + | chr3_1:80602111-80602130 | None:intergenic | 45.0% |
| GTTGGATGAAGGGCAGAATT+TGG | - | chr3_1:80602311-80602330 | Msa0379470:intron | 45.0% | |
| !! | ACATGATAGGGAAGCGTTGA+TGG | - | chr3_1:80602356-80602375 | Msa0379470:intron | 45.0% |
| !! | AGGGAAGCGTTGATGGAATT+TGG | - | chr3_1:80602363-80602382 | Msa0379470:intron | 45.0% |
| !! | GGGAAGCGTTGATGGAATTT+GGG | - | chr3_1:80602364-80602383 | Msa0379470:intron | 45.0% |
| !!! | TCAGTCGCGTGTTTTGGAAT+TGG | - | chr3_1:80602416-80602435 | Msa0379470:intron | 45.0% |
| !!! | CGCGTGTTTTGGAATTGGAA+AGG | - | chr3_1:80602421-80602440 | Msa0379470:intron | 45.0% |
| TAATCCCACTGTCCACTTGT+GGG | + | chr3_1:80602667-80602686 | None:intergenic | 45.0% | |
| ! | AGATTAGTAGTTTGGAGCGG+AGG | - | chr3_1:80602805-80602824 | Msa0379470:intron | 45.0% |
| ! | GATTAGTAGTTTGGAGCGGA+GGG | - | chr3_1:80602806-80602825 | Msa0379470:intron | 45.0% |
| ! | AGGGAAGGGTTTTTGACGAA+AGG | - | chr3_1:80602825-80602844 | Msa0379470:intron | 45.0% |
| ! | GGGAAGGGTTTTTGACGAAA+GGG | - | chr3_1:80602826-80602845 | Msa0379470:intron | 45.0% |
| ! | AAGGGTTTTTGACGAAAGGG+AGG | - | chr3_1:80602829-80602848 | Msa0379470:intron | 45.0% |
| ! | AGGGTTTTTGACGAAAGGGA+GGG | - | chr3_1:80602830-80602849 | Msa0379470:intron | 45.0% |
| TCACTCACCATAGGTTAGAG+TGG | - | chr3_1:80603283-80603302 | Msa0379470:CDS | 45.0% | |
| GTTTCAGCCACTCTAACCTA+TGG | + | chr3_1:80603293-80603312 | None:intergenic | 45.0% | |
| GTAAAAGGCTGCTGAGTATG+TGG | - | chr3_1:80603824-80603843 | Msa0379470:intron | 45.0% | |
| ACAAGGCGAACAAAAGGCTA+TGG | - | chr3_1:80604285-80604304 | Msa0379470:intron | 45.0% | |
| GTATGTTTCTCGCCTGAACT+TGG | + | chr3_1:80604335-80604354 | None:intergenic | 45.0% | |
| TCTAACTCGCCTTGGAAGAA+GGG | + | chr3_1:80604364-80604383 | None:intergenic | 45.0% | |
| ATCTAACTCGCCTTGGAAGA+AGG | + | chr3_1:80604365-80604384 | None:intergenic | 45.0% | |
| ATGTACTCGAATATGTGGGG+GGG | - | chr3_1:80604446-80604465 | Msa0379470:intron | 45.0% | |
| TGCTTCATAGTCGGCAAGAA+AGG | + | chr3_1:80604507-80604526 | None:intergenic | 45.0% | |
| ! | TTCTTGCCGACTATGAAGCA+CGG | - | chr3_1:80604507-80604526 | Msa0379470:intron | 45.0% |
| TATGAAGTACGGACGCTCTT+CGG | + | chr3_1:80604655-80604674 | None:intergenic | 45.0% | |
| TGCCGATGATATTACCCATC+TGG | - | chr3_1:80604679-80604698 | Msa0379470:CDS | 45.0% | |
| GCCGATGATATTACCCATCT+GGG | - | chr3_1:80604680-80604699 | Msa0379470:CDS | 45.0% | |
| !! | TCCACTGGGCTACTTGTTTT+GGG | + | chr3_1:80604795-80604814 | None:intergenic | 45.0% |
| ATGCAGAATATGCGCATTCC+AGG | - | chr3_1:80604918-80604937 | Msa0379470:CDS | 45.0% | |
| TGCAGAATATGCGCATTCCA+GGG | - | chr3_1:80604919-80604938 | Msa0379470:CDS | 45.0% | |
| TCCAAGAACAAGTAGCTCAG+TGG | - | chr3_1:80605083-80605102 | Msa0379470:five_prime_UTR | 45.0% | |
| TCCACTGAGCTACTTGTTCT+TGG | + | chr3_1:80605087-80605106 | None:intergenic | 45.0% | |
| AAACCGAAACCTTGTGGCGT+TGG | + | chr3_1:80602129-80602148 | None:intergenic | 50.0% | |
| GGATCGAAACCGAAACCTTG+TGG | + | chr3_1:80602135-80602154 | None:intergenic | 50.0% | |
| GGAGAATCAGAGACTTGCGT+CGG | - | chr3_1:80602275-80602294 | Msa0379470:intron | 50.0% | |
| GTCGGCGTGTCAGAAATTGT+TGG | - | chr3_1:80602293-80602312 | Msa0379470:intron | 50.0% | |
| AGCTGATGAACGTGAACGAC+AGG | - | chr3_1:80602392-80602411 | Msa0379470:intron | 50.0% | |
| AATCCCACTGTCCACTTGTG+GGG | + | chr3_1:80602666-80602685 | None:intergenic | 50.0% | |
| CTAATCCCACTGTCCACTTG+TGG | + | chr3_1:80602668-80602687 | None:intergenic | 50.0% | |
| ! | GGGTTTTTGACGAAAGGGAG+GGG | - | chr3_1:80602831-80602850 | Msa0379470:intron | 50.0% |
| ! | GGTTTTTGACGAAAGGGAGG+GGG | - | chr3_1:80602832-80602851 | Msa0379470:intron | 50.0% |
| TCTTCACAAAGCTGAGGAGG+AGG | - | chr3_1:80604132-80604151 | Msa0379470:intron | 50.0% | |
| GAAAGGGATGACCCAAGTTC+AGG | - | chr3_1:80604320-80604339 | Msa0379470:intron | 50.0% | |
| CCGTTTCCGTGCTTCATAGT+CGG | + | chr3_1:80604516-80604535 | None:intergenic | 50.0% | |
| CCGACTATGAAGCACGGAAA+CGG | - | chr3_1:80604513-80604532 | Msa0379470:intron | 50.0% | |
| ATGAAGCACGGAAACGGACA+TGG | - | chr3_1:80604519-80604538 | Msa0379470:intron | 50.0% | |
| TCCCAAAACAAGTAGCCCAG+TGG | - | chr3_1:80604791-80604810 | Msa0379470:intron | 50.0% | |
| ! | CTCCACTGGGCTACTTGTTT+TGG | + | chr3_1:80604796-80604815 | None:intergenic | 50.0% |
| TCCTTTCCTTCTGCTCCACT+GGG | + | chr3_1:80604809-80604828 | None:intergenic | 50.0% | |
| TTCCTTTCCTTCTGCTCCAC+TGG | + | chr3_1:80604810-80604829 | None:intergenic | 50.0% | |
| TATGTTTCTCGCCGGAGTTG+GGG | + | chr3_1:80604836-80604855 | None:intergenic | 50.0% | |
| GTATGTTTCTCGCCGGAGTT+GGG | + | chr3_1:80604837-80604856 | None:intergenic | 50.0% | |
| TCTAACTCGCCTTGGCAGAT+CGG | + | chr3_1:80604866-80604885 | None:intergenic | 50.0% | |
| GAACAAGTAGCTCAGTGGAG+AGG | - | chr3_1:80605088-80605107 | Msa0379470:five_prime_UTR | 50.0% | |
| TCAACTCCTCCAACGCCACA+AGG | - | chr3_1:80602117-80602136 | Msa0379470:intron | 55.0% | |
| CCTCCAACGCCACAAGGTTT+CGG | - | chr3_1:80602123-80602142 | Msa0379470:intron | 55.0% | |
| ! | ACAGGCTCAGTCGCGTGTTT+TGG | - | chr3_1:80602410-80602429 | Msa0379470:intron | 55.0% |
| TTAAATGGGCCCCCCACAAG+TGG | - | chr3_1:80602652-80602671 | Msa0379470:intron | 55.0% | |
| ATCCCACTGTCCACTTGTGG+GGG | + | chr3_1:80602665-80602684 | None:intergenic | 55.0% | |
| GCGTAACACGGTGTTCACAC+AGG | + | chr3_1:80602751-80602770 | None:intergenic | 55.0% | |
| ! | AGTAGTTTGGAGCGGAGGGA+AGG | - | chr3_1:80602810-80602829 | Msa0379470:intron | 55.0% |
| ! | GTAGTTTGGAGCGGAGGGAA+GGG | - | chr3_1:80602811-80602830 | Msa0379470:intron | 55.0% |
| GGGAGGGTAAATCCCCAAAC+TGG | - | chr3_1:80602952-80602971 | Msa0379470:CDS | 55.0% | |
| GGCTGCTGAGTATGTGGAAC+TGG | - | chr3_1:80603830-80603849 | Msa0379470:intron | 55.0% | |
| TACCAGCAGCCCTTCTTCCA+AGG | - | chr3_1:80604352-80604371 | Msa0379470:intron | 55.0% | |
| ACGGAAACGGACATGGACAC+CGG | - | chr3_1:80604526-80604545 | Msa0379470:intron | 55.0% | |
| GTCAATGTCCGTGTCGTGTC+CGG | + | chr3_1:80604548-80604567 | None:intergenic | 55.0% | |
| AAGTAGCCCAGTGGAGCAGA+AGG | - | chr3_1:80604800-80604819 | Msa0379470:intron | 55.0% | |
| GAAAGGAACCACCCCAACTC+CGG | - | chr3_1:80604822-80604841 | Msa0379470:intron | 55.0% | |
| GGTATGTTTCTCGCCGGAGT+TGG | + | chr3_1:80604838-80604857 | None:intergenic | 55.0% | |
| GCTGCTGGTATGTTTCTCGC+CGG | + | chr3_1:80604342-80604361 | None:intergenic | 55.0% | |
| ! | CCGAAACCTTGTGGCGTTGG+AGG | + | chr3_1:80602126-80602145 | None:intergenic | 60.0% |
| TCCCACTGTCCACTTGTGGG+GGG | + | chr3_1:80602664-80602683 | None:intergenic | 60.0% | |
| ACTCGAATATGTGGGGGGGC+AGG | - | chr3_1:80604450-80604469 | Msa0379470:intron | 60.0% | |
| CTCGAATATGTGGGGGGGCA+GGG | - | chr3_1:80604451-80604470 | Msa0379470:intron | 60.0% | |
| CATGGACACCGGACACGACA+CGG | - | chr3_1:80604537-80604556 | Msa0379470:CDS | 60.0% | |
| GCCCAGTGGAGCAGAAGGAA+AGG | - | chr3_1:80604805-80604824 | Msa0379470:intron | 60.0% | |
| TACCAGCAGCCGATCTGCCA+AGG | - | chr3_1:80604854-80604873 | Msa0379470:intron | 60.0% | |
| GCCCCCCACAAGTGGACAGT+GGG | - | chr3_1:80602660-80602679 | Msa0379470:intron | 65.0% | |
| CGCCTTGGAAGAAGGGCTGC+TGG | + | chr3_1:80604357-80604376 | None:intergenic | 65.0% | |
| GTTTCTCGCCGGAGTTGGGG+TGG | + | chr3_1:80604833-80604852 | None:intergenic | 65.0% | |
| GGCCCCCCACAAGTGGACAG+TGG | - | chr3_1:80602659-80602678 | Msa0379470:intron | 70.0% | |
| CGCCTTGGCAGATCGGCTGC+TGG | + | chr3_1:80604859-80604878 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 80601816 | 80605218 | 80601816 | ID=Msa0379470;Name=Msa0379470 |
| chr3_1 | mRNA | 80601816 | 80605218 | 80601816 | ID=Msa0379470-mRNA-1;Parent=Msa0379470;Name=Msa0379470-mRNA-1;_AED=0.05;_eAED=0.05;_QI=173|0.33|0.28|1|1|1|7|0|354 |
| chr3_1 | exon | 80601816 | 80601971 | 80601816 | ID=Msa0379470-mRNA-1:exon:20172;Parent=Msa0379470-mRNA-1 |
| chr3_1 | exon | 80602159 | 80602263 | 80602159 | ID=Msa0379470-mRNA-1:exon:20171;Parent=Msa0379470-mRNA-1 |
| chr3_1 | exon | 80602661 | 80602783 | 80602661 | ID=Msa0379470-mRNA-1:exon:20170;Parent=Msa0379470-mRNA-1 |
| chr3_1 | exon | 80602881 | 80602986 | 80602881 | ID=Msa0379470-mRNA-1:exon:20169;Parent=Msa0379470-mRNA-1 |
| chr3_1 | exon | 80603183 | 80603337 | 80603183 | ID=Msa0379470-mRNA-1:exon:20168;Parent=Msa0379470-mRNA-1 |
| chr3_1 | exon | 80604534 | 80604803 | 80604534 | ID=Msa0379470-mRNA-1:exon:20167;Parent=Msa0379470-mRNA-1 |
| chr3_1 | exon | 80604896 | 80605218 | 80604896 | ID=Msa0379470-mRNA-1:exon:20166;Parent=Msa0379470-mRNA-1 |
| chr3_1 | five_prime_UTR | 80605046 | 80605218 | 80605046 | ID=Msa0379470-mRNA-1:five_prime_utr;Parent=Msa0379470-mRNA-1 |
| chr3_1 | CDS | 80604896 | 80605045 | 80604896 | ID=Msa0379470-mRNA-1:cds;Parent=Msa0379470-mRNA-1 |
| chr3_1 | CDS | 80604534 | 80604803 | 80604534 | ID=Msa0379470-mRNA-1:cds;Parent=Msa0379470-mRNA-1 |
| chr3_1 | CDS | 80603183 | 80603337 | 80603183 | ID=Msa0379470-mRNA-1:cds;Parent=Msa0379470-mRNA-1 |
| chr3_1 | CDS | 80602881 | 80602986 | 80602881 | ID=Msa0379470-mRNA-1:cds;Parent=Msa0379470-mRNA-1 |
| chr3_1 | CDS | 80602661 | 80602783 | 80602661 | ID=Msa0379470-mRNA-1:cds;Parent=Msa0379470-mRNA-1 |
| chr3_1 | CDS | 80602159 | 80602263 | 80602159 | ID=Msa0379470-mRNA-1:cds;Parent=Msa0379470-mRNA-1 |
| chr3_1 | CDS | 80601816 | 80601971 | 80601816 | ID=Msa0379470-mRNA-1:cds;Parent=Msa0379470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
