AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1035610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035610 MtrunA17_Chr7g0259821 93.709 302 11 2 1 302 1 294 0.0 540
Msa1035610 MtrunA17_Chr8g0334431 48.837 129 64 1 166 292 169 297 7.65e-30 115
Msa1035610 MtrunA17_Chr7g0245331 31.429 280 143 8 38 288 92 351 9.91e-29 114
Msa1035610 MtrunA17_Chr3g0108551 35.565 239 115 6 70 293 161 375 6.01e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035610 AT4G02800.1 55.108 323 130 6 1 312 1 319 5.68e-102 302
Msa1035610 AT5G01970.2 37.441 211 120 4 77 283 6 208 1.74e-32 121
Msa1035610 AT5G01970.1 37.327 217 124 4 71 283 97 305 2.06e-32 123
Msa1035610 AT1G30050.1 55.556 108 47 1 168 274 183 290 1.48e-30 119
Msa1035610 AT2G30530.1 53.271 107 50 0 168 274 226 332 5.41e-23 98.2

Find 81 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTAATGAATCTAAGATTT+TGG 0.072285 7_1:+71568941 None:intergenic
AAGTGAATGTTTAATAAATT+TGG 0.149873 7_1:+71566696 None:intergenic
ACAGAGTCACAAACAGAAAA+TGG 0.208517 7_1:-71568187 Msa1035610:CDS
ACTAATATTATTATCACATT+TGG 0.275672 7_1:+71566883 None:intergenic
CTTCAGCTGGAAGCACTTCT+TGG 0.294756 7_1:-71567334 Msa1035610:CDS
CCATAGGGTGCAAGAGAATT+GGG 0.312480 7_1:-71568358 Msa1035610:intron
TCCATAGGGTGCAAGAGAAT+TGG 0.320035 7_1:-71568359 Msa1035610:intron
TAATTTGGACAATGCCTTGC+TGG 0.350274 7_1:-71568829 Msa1035610:intron
AATGTTTAATAAATTTGGTT+TGG 0.356208 7_1:+71566701 None:intergenic
GGAACCATTGTCACATTAGT+AGG 0.357230 7_1:+71566904 None:intergenic
CATCTTCCGATAAACGCTTC+TGG 0.357963 7_1:-71569013 Msa1035610:CDS
ATGTTTAATAAATTTGGTTT+GGG 0.383873 7_1:+71566702 None:intergenic
AAAATTTGGTTTGCATGAAA+TGG 0.390413 7_1:+71567002 None:intergenic
CACCAGAGAACTTGTAGAAA+TGG 0.394974 7_1:+71567057 None:intergenic
CGAAACCGTCACGCAATCTT+CGG 0.399997 7_1:+71567900 None:intergenic
CAGAGTCACAAACAGAAAAT+GGG 0.402856 7_1:-71568186 Msa1035610:CDS
GATTCGTTGTTGCTCATAAG+AGG 0.407447 7_1:-71568891 Msa1035610:CDS
TTGCGTGACGGTTTCGCTAA+AGG 0.407989 7_1:-71567893 Msa1035610:CDS
TTTGCAGATTGCAGTTTCAA+TGG 0.433732 7_1:-71568017 Msa1035610:intron
TTCTCCTCTTCACATCAAAC+AGG 0.442956 7_1:-71569166 Msa1035610:intron
AACCATTTCTACAAGTTCTC+TGG 0.444144 7_1:-71567059 Msa1035610:three_prime_UTR
AGAAGCAGAGAAAGAGAAAG+AGG 0.454038 7_1:-71568263 Msa1035610:CDS
TTCATCCCTTGTCTCTTCTC+CGG 0.455453 7_1:+71567144 None:intergenic
TCTCCACCACGATCAATTGC+CGG 0.462348 7_1:-71567163 Msa1035610:CDS
CAGGCCTGAGGAAGATGATC+TGG 0.475023 7_1:-71567867 Msa1035610:intron
CCACCAGCTGGTGAAGGCAT+TGG 0.478762 7_1:+71567263 None:intergenic
TGAAAGAGGAAAACGATTGA+AGG 0.478931 7_1:-71568916 Msa1035610:CDS
GATTCATTACAGAATGAAAG+AGG 0.481804 7_1:-71568930 Msa1035610:CDS
AGAAGTCCAAGCACATTCCT+TGG 0.491643 7_1:+71567188 None:intergenic
AGTGCTCCAGAAGCGTTTAT+CGG 0.496763 7_1:+71569007 None:intergenic
ACGGTTTCGCTAAAGGAGTC+AGG 0.501339 7_1:-71567886 Msa1035610:CDS
GGTGTAGGTGAGGCTTCAGC+TGG 0.502604 7_1:-71567347 Msa1035610:intron
CTTACCAGATCATCTTCCTC+AGG 0.509130 7_1:+71567863 None:intergenic
AATATATCAGTTAATGTGGG+TGG 0.516844 7_1:+71568331 None:intergenic
AAACCAATGCCTTCACCAGC+TGG 0.518473 7_1:-71567266 Msa1035610:CDS
AGACTGTCACATTATAATAG+TGG 0.519320 7_1:+71566847 None:intergenic
CAGAAGCGTTTATCGGAAGA+TGG 0.528157 7_1:+71569014 None:intergenic
GTAGAAATGGTTACTAGAGA+TGG 0.530230 7_1:+71567070 None:intergenic
TTACAGAGGGGATGTTATGA+TGG 0.536525 7_1:+71566973 None:intergenic
GGTTACTAGAGATGGTTCCT+TGG 0.537693 7_1:+71567078 None:intergenic
GGAAGCACTTCTTGGTGAGA+AGG 0.546681 7_1:-71567326 Msa1035610:CDS
AGTCATCCAAGGAATGTGCT+TGG 0.547639 7_1:-71567194 Msa1035610:CDS
TTTGAATATATCAGTTAATG+TGG 0.556491 7_1:+71568327 None:intergenic
AAAACCTGTTTGATGTGAAG+AGG 0.562179 7_1:+71569162 None:intergenic
TTGAATATATCAGTTAATGT+GGG 0.565772 7_1:+71568328 None:intergenic
AGTCAAAGCAAGGAGTAAAG+AGG 0.574305 7_1:-71568240 Msa1035610:CDS
GAAGAGACAAGGGATGAAGA+TGG 0.575725 7_1:-71567139 Msa1035610:CDS
ATTCGTTGTTGCTCATAAGA+GGG 0.576596 7_1:-71568890 Msa1035610:CDS
ATTTGCAGCATCATTACAGA+GGG 0.577586 7_1:+71566960 None:intergenic
TGTTTGATGTGAAGAGGAGA+AGG 0.578043 7_1:+71569168 None:intergenic
CAATTGCCGGAGAAGAGACA+AGG 0.585854 7_1:-71567150 Msa1035610:CDS
AAACACCATGACAACCTCGT+TGG 0.586010 7_1:-71569202 Msa1035610:exon
CATAGGGTGCAAGAGAATTG+GGG 0.596960 7_1:-71568357 Msa1035610:intron
AGTGAGATAATCTTAACTAA+CGG 0.602190 7_1:+71569272 None:intergenic
GATACTCCACCAGCTGGTGA+AGG 0.606126 7_1:+71567257 None:intergenic
TCTCCGGCAATTGATCGTGG+TGG 0.606421 7_1:+71567160 None:intergenic
TCTTCTCCGGCAATTGATCG+TGG 0.606721 7_1:+71567157 None:intergenic
TCATATGAGCAAGTCATCCA+AGG 0.609790 7_1:-71567205 Msa1035610:CDS
TTGCATGAAATGGTGATGGT+AGG 0.612666 7_1:+71567012 None:intergenic
CCAATGCCTTCACCAGCTGG+TGG 0.614590 7_1:-71567263 Msa1035610:CDS
TGGTTTGCATGAAATGGTGA+TGG 0.615131 7_1:+71567008 None:intergenic
TGTGTCCAACGAGGTTGTCA+TGG 0.617619 7_1:+71569197 None:intergenic
GCTCATAAGAGGGTTTGACT+CGG 0.617847 7_1:-71568880 Msa1035610:CDS
GAGAAAGAGGAGTCAAAGCA+AGG 0.618162 7_1:-71568250 Msa1035610:CDS
TCTTCCTACTAATGTGACAA+TGG 0.625282 7_1:-71566908 Msa1035610:three_prime_UTR
CGCTAAAGGAGTCAGGCCTG+AGG 0.629684 7_1:-71567879 Msa1035610:CDS
GTTGATGATACTCCACCAGC+TGG 0.633667 7_1:+71567251 None:intergenic
AGAGTCACAAACAGAAAATG+GGG 0.641781 7_1:-71568185 Msa1035610:CDS
TGTAATACTACTTACCAGCA+AGG 0.646639 7_1:+71568815 None:intergenic
ACATTATAATAGTGGCGGAG+TGG 0.655847 7_1:+71566855 None:intergenic
CTGTCACATTATAATAGTGG+CGG 0.659217 7_1:+71566850 None:intergenic
TATTTGCAGCATCATTACAG+AGG 0.660089 7_1:+71566959 None:intergenic
AATTGCCGGAGAAGAGACAA+GGG 0.670922 7_1:-71567149 Msa1035610:CDS
TCGGAAGATGGAGTGAACTG+AGG 0.679491 7_1:+71569026 None:intergenic
GAGAACCGAAGATTGCGTGA+CGG 0.684297 7_1:-71567905 Msa1035610:CDS
GAGAAGAACTATGAACACCA+AGG 0.704185 7_1:-71567095 Msa1035610:three_prime_UTR
GAAGCGAGTCAATTCTACAA+CGG 0.721187 7_1:+71568982 None:intergenic
CTTGCTCATATGACTCAGAG+AGG 0.724039 7_1:+71567215 None:intergenic
AGGAGAAGCTGTGTCCAACG+AGG 0.737241 7_1:+71569188 None:intergenic
GACTCGCTTCTCGATAAACG+CGG 0.746002 7_1:-71568969 Msa1035610:CDS
TTTGCAGCATCATTACAGAG+GGG 0.746992 7_1:+71566961 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTAAAACATTAATTAAT+TGG + chr7_1:71567228-71567247 None:intergenic 10.0%
!!! TTTAGAATTTCATTGATTTT+AGG - chr7_1:71568559-71568578 Msa1035610:intron 15.0%
!! ACTAATATTATTATCACATT+TGG + chr7_1:71569105-71569124 None:intergenic 15.0%
!!! ATGTTTTTTTTTAGAGTAAG+AGG + chr7_1:71566850-71566869 None:intergenic 20.0%
!!! TGTAATGAATCTAAGATTTT+GGG + chr7_1:71567046-71567065 None:intergenic 20.0%
!!! ATCTCTTTTGTCTAATAATT+TGG - chr7_1:71567141-71567160 Msa1035610:CDS 20.0%
!!! TTTTAACCATATCAAAAAAG+CGG + chr7_1:71567309-71567328 None:intergenic 20.0%
!!! TTTTTCTTCTATATTTGAGA+CGG + chr7_1:71567458-71567477 None:intergenic 20.0%
!! GAGTTATCTAGTTAAAAATT+TGG - chr7_1:71567492-71567511 Msa1035610:intron 20.0%
!! ACTAAAAAATCTACTTTATC+CGG + chr7_1:71567572-71567591 None:intergenic 20.0%
!!! ATTCAGATTATTTTTCCATA+GGG - chr7_1:71567612-71567631 Msa1035610:intron 20.0%
!! TTGAATATATCAGTTAATGT+GGG + chr7_1:71567660-71567679 None:intergenic 20.0%
!! TTTGAATATATCAGTTAATG+TGG + chr7_1:71567661-71567680 None:intergenic 20.0%
!! AATCTTAATCATATACCATA+TGG - chr7_1:71568155-71568174 Msa1035610:CDS 20.0%
!!! TTCAAATTCTTTTAACCATA+TGG + chr7_1:71568173-71568192 None:intergenic 20.0%
!! ATTGTAATTAGACATTAGTT+AGG - chr7_1:71568273-71568292 Msa1035610:CDS 20.0%
!! CATAATAATTTGAACAATTC+AGG + chr7_1:71568587-71568606 None:intergenic 20.0%
!! CTGAATTGTTCAAATTATTA+TGG - chr7_1:71568585-71568604 Msa1035610:intron 20.0%
!! CTAAAAAAATATATCTTGCA+TGG - chr7_1:71569173-71569192 Msa1035610:CDS 20.0%
! AGTGAGATAATCTTAACTAA+CGG + chr7_1:71566716-71566735 None:intergenic 25.0%
!! TGTTTTCGTTTTATAACAAC+AGG - chr7_1:71566907-71566926 Msa1035610:three_prime_UTR 25.0%
!!! CTGTAATGAATCTAAGATTT+TGG + chr7_1:71567047-71567066 None:intergenic 25.0%
!!! TAATAACCGCTTTTTTGATA+TGG - chr7_1:71567300-71567319 Msa1035610:CDS 25.0%
!!! TTTTTGTTTATATTCGAGAC+CGG - chr7_1:71567550-71567569 Msa1035610:intron 25.0%
!!! CATTCAGATTATTTTTCCAT+AGG - chr7_1:71567611-71567630 Msa1035610:intron 25.0%
! ATCAAGAAAGCAAAAAATGT+TGG - chr7_1:71567843-71567862 Msa1035610:intron 25.0%
! TCCTAGTTAGTAGATTATAT+TGG - chr7_1:71567908-71567927 Msa1035610:CDS 25.0%
! ACCAATATAATCTACTAACT+AGG + chr7_1:71567912-71567931 None:intergenic 25.0%
! TTCTTAAAACAATTGCATTG+AGG + chr7_1:71568392-71568411 None:intergenic 25.0%
!!! GAATCATTGTTGATAACAAT+AGG - chr7_1:71568416-71568435 Msa1035610:intron 25.0%
! ATTATGGAACTAATCTTATG+TGG - chr7_1:71568601-71568620 Msa1035610:intron 25.0%
!!! AAAATTTGGTTTGCATGAAA+TGG + chr7_1:71568986-71569005 None:intergenic 25.0%
!! TATGATGGTGCTAAAAAATT+TGG + chr7_1:71569000-71569019 None:intergenic 25.0%
GATTCATTACAGAATGAAAG+AGG - chr7_1:71567055-71567074 Msa1035610:three_prime_UTR 30.0%
AATATATCAGTTAATGTGGG+TGG + chr7_1:71567657-71567676 None:intergenic 30.0%
! TGTTTTATGCAAGAAAGATG+TGG - chr7_1:71568044-71568063 Msa1035610:intron 30.0%
!! CACAGTTTTTCTCTAGAAAT+TGG - chr7_1:71568323-71568342 Msa1035610:CDS 30.0%
!! TTTTTCTCTAGAAATTGGAG+TGG - chr7_1:71568328-71568347 Msa1035610:CDS 30.0%
TATTCTCTTTGAACAATTCC+AGG + chr7_1:71568512-71568531 None:intergenic 30.0%
AACTAATCTTATGTGGATGA+TGG - chr7_1:71568608-71568627 Msa1035610:intron 30.0%
! CATCAGATTTGCATTTTCAT+TGG + chr7_1:71568694-71568713 None:intergenic 30.0%
! TTATTTTCTGCGGTAATACA+AGG + chr7_1:71569054-71569073 None:intergenic 30.0%
! AGGAAGATCATTATTTTCTG+CGG + chr7_1:71569064-71569083 None:intergenic 30.0%
AGACTGTCACATTATAATAG+TGG + chr7_1:71569141-71569160 None:intergenic 30.0%
AAAACCTGTTTGATGTGAAG+AGG + chr7_1:71566826-71566845 None:intergenic 35.0%
TGAAAGAGGAAAACGATTGA+AGG - chr7_1:71567069-71567088 Msa1035610:three_prime_UTR 35.0%
ATTCGTTGTTGCTCATAAGA+GGG - chr7_1:71567095-71567114 Msa1035610:three_prime_UTR 35.0%
TGTAATACTACTTACCAGCA+AGG + chr7_1:71567173-71567192 None:intergenic 35.0%
ACAGAGTCACAAACAGAAAA+TGG - chr7_1:71567798-71567817 Msa1035610:intron 35.0%
CAGAGTCACAAACAGAAAAT+GGG - chr7_1:71567799-71567818 Msa1035610:intron 35.0%
AGAGTCACAAACAGAAAATG+GGG - chr7_1:71567800-71567819 Msa1035610:intron 35.0%
!! CTAGTACAATGGTTGATAAG+AGG + chr7_1:71567888-71567907 None:intergenic 35.0%
! ACTAACTAGGACTAGTACAA+TGG + chr7_1:71567899-71567918 None:intergenic 35.0%
!! TATATTGGTGCTGAAGTTTG+TGG - chr7_1:71567923-71567942 Msa1035610:CDS 35.0%
TTTGCAGATTGCAGTTTCAA+TGG - chr7_1:71567968-71567987 Msa1035610:CDS 35.0%
AACATCACTAACTCTTTCAC+AGG + chr7_1:71568202-71568221 None:intergenic 35.0%
ATTGGAGTGGTCTAGTTATT+TGG - chr7_1:71568341-71568360 Msa1035610:CDS 35.0%
! TGTGTTGATCAATTTAGTCC+TGG - chr7_1:71568491-71568510 Msa1035610:intron 35.0%
GTAGAAATGGTTACTAGAGA+TGG + chr7_1:71568918-71568937 None:intergenic 35.0%
AACCATTTCTACAAGTTCTC+TGG - chr7_1:71568926-71568945 Msa1035610:CDS 35.0%
ATTTGCAGCATCATTACAGA+GGG + chr7_1:71569028-71569047 None:intergenic 35.0%
TATTTGCAGCATCATTACAG+AGG + chr7_1:71569029-71569048 None:intergenic 35.0%
TCTTCCTACTAATGTGACAA+TGG - chr7_1:71569077-71569096 Msa1035610:intron 35.0%
CTGTCACATTATAATAGTGG+CGG + chr7_1:71569138-71569157 None:intergenic 35.0%
TGTTTGATGTGAAGAGGAGA+AGG + chr7_1:71566820-71566839 None:intergenic 40.0%
TTCTCCTCTTCACATCAAAC+AGG - chr7_1:71566819-71566838 Msa1035610:three_prime_UTR 40.0%
GAAGCGAGTCAATTCTACAA+CGG + chr7_1:71567006-71567025 None:intergenic 40.0%
GATTCGTTGTTGCTCATAAG+AGG - chr7_1:71567094-71567113 Msa1035610:three_prime_UTR 40.0%
TAATTTGGACAATGCCTTGC+TGG - chr7_1:71567156-71567175 Msa1035610:CDS 40.0%
AGAAGCAGAGAAAGAGAAAG+AGG - chr7_1:71567722-71567741 Msa1035610:intron 40.0%
AGTCAAAGCAAGGAGTAAAG+AGG - chr7_1:71567745-71567764 Msa1035610:intron 40.0%
! TATGTGGATGATGGTTTGTG+TGG - chr7_1:71568617-71568636 Msa1035610:intron 40.0%
TCATATGAGCAAGTCATCCA+AGG - chr7_1:71568780-71568799 Msa1035610:intron 40.0%
GAGAAGAACTATGAACACCA+AGG - chr7_1:71568890-71568909 Msa1035610:CDS 40.0%
CACCAGAGAACTTGTAGAAA+TGG + chr7_1:71568931-71568950 None:intergenic 40.0%
! CTCTGGTGAACTTTTGATGA+TGG - chr7_1:71568943-71568962 Msa1035610:CDS 40.0%
!! TTGCATGAAATGGTGATGGT+AGG + chr7_1:71568976-71568995 None:intergenic 40.0%
! TGGTTTGCATGAAATGGTGA+TGG + chr7_1:71568980-71568999 None:intergenic 40.0%
TTACAGAGGGGATGTTATGA+TGG + chr7_1:71569015-71569034 None:intergenic 40.0%
TTTGCAGCATCATTACAGAG+GGG + chr7_1:71569027-71569046 None:intergenic 40.0%
GGAACCATTGTCACATTAGT+AGG + chr7_1:71569084-71569103 None:intergenic 40.0%
! ACATTATAATAGTGGCGGAG+TGG + chr7_1:71569133-71569152 None:intergenic 40.0%
AAACACCATGACAACCTCGT+TGG - chr7_1:71566783-71566802 Msa1035610:three_prime_UTR 45.0%
!! CAGAAGCGTTTATCGGAAGA+TGG + chr7_1:71566974-71566993 None:intergenic 45.0%
CATCTTCCGATAAACGCTTC+TGG - chr7_1:71566972-71566991 Msa1035610:three_prime_UTR 45.0%
!! AGTGCTCCAGAAGCGTTTAT+CGG + chr7_1:71566981-71567000 None:intergenic 45.0%
GCTCATAAGAGGGTTTGACT+CGG - chr7_1:71567105-71567124 Msa1035610:exon 45.0%
TCCATAGGGTGCAAGAGAAT+TGG - chr7_1:71567626-71567645 Msa1035610:intron 45.0%
CCATAGGGTGCAAGAGAATT+GGG - chr7_1:71567627-71567646 Msa1035610:intron 45.0%
CATAGGGTGCAAGAGAATTG+GGG - chr7_1:71567628-71567647 Msa1035610:intron 45.0%
GAGAAAGAGGAGTCAAAGCA+AGG - chr7_1:71567735-71567754 Msa1035610:intron 45.0%
CTTACCAGATCATCTTCCTC+AGG + chr7_1:71568125-71568144 None:intergenic 45.0%
CTGAGGAAGATGATCTGGTA+AGG - chr7_1:71568123-71568142 Msa1035610:intron 45.0%
! GATGATGGTTTGTGTGGTGT+AGG - chr7_1:71568623-71568642 Msa1035610:intron 45.0%
CTTGCTCATATGACTCAGAG+AGG + chr7_1:71568773-71568792 None:intergenic 45.0%
AGTCATCCAAGGAATGTGCT+TGG - chr7_1:71568791-71568810 Msa1035610:intron 45.0%
AGAAGTCCAAGCACATTCCT+TGG + chr7_1:71568800-71568819 None:intergenic 45.0%
AATTGCCGGAGAAGAGACAA+GGG - chr7_1:71568836-71568855 Msa1035610:CDS 45.0%
TTCATCCCTTGTCTCTTCTC+CGG + chr7_1:71568844-71568863 None:intergenic 45.0%
GAAGAGACAAGGGATGAAGA+TGG - chr7_1:71568846-71568865 Msa1035610:CDS 45.0%
GGTTACTAGAGATGGTTCCT+TGG + chr7_1:71568910-71568929 None:intergenic 45.0%
TGTGTCCAACGAGGTTGTCA+TGG + chr7_1:71566791-71566810 None:intergenic 50.0%
TCGGAAGATGGAGTGAACTG+AGG + chr7_1:71566962-71566981 None:intergenic 50.0%
GACTCGCTTCTCGATAAACG+CGG - chr7_1:71567016-71567035 Msa1035610:three_prime_UTR 50.0%
CCCAATTCTCTTGCACCCTA+TGG + chr7_1:71567630-71567649 None:intergenic 50.0%
GAGAACCGAAGATTGCGTGA+CGG - chr7_1:71568080-71568099 Msa1035610:intron 50.0%
CGAAACCGTCACGCAATCTT+CGG + chr7_1:71568088-71568107 None:intergenic 50.0%
TTGCGTGACGGTTTCGCTAA+AGG - chr7_1:71568092-71568111 Msa1035610:intron 50.0%
ACGGTTTCGCTAAAGGAGTC+AGG - chr7_1:71568099-71568118 Msa1035610:intron 50.0%
! TGGTTTGTGTGGTGTAGGTG+AGG - chr7_1:71568628-71568647 Msa1035610:intron 50.0%
!! CTTCAGCTGGAAGCACTTCT+TGG - chr7_1:71568651-71568670 Msa1035610:intron 50.0%
!! GGAAGCACTTCTTGGTGAGA+AGG - chr7_1:71568659-71568678 Msa1035610:intron 50.0%
AAACCAATGCCTTCACCAGC+TGG - chr7_1:71568719-71568738 Msa1035610:intron 50.0%
!! GTTGATGATACTCCACCAGC+TGG + chr7_1:71568737-71568756 None:intergenic 50.0%
TCTCCACCACGATCAATTGC+CGG - chr7_1:71568822-71568841 Msa1035610:intron 50.0%
TCTTCTCCGGCAATTGATCG+TGG + chr7_1:71568831-71568850 None:intergenic 50.0%
CAATTGCCGGAGAAGAGACA+AGG - chr7_1:71568835-71568854 Msa1035610:CDS 50.0%
AGGAGAAGCTGTGTCCAACG+AGG + chr7_1:71566800-71566819 None:intergenic 55.0%
CAGGCCTGAGGAAGATGATC+TGG - chr7_1:71568118-71568137 Msa1035610:intron 55.0%
GATACTCCACCAGCTGGTGA+AGG + chr7_1:71568731-71568750 None:intergenic 55.0%
TCTCCGGCAATTGATCGTGG+TGG + chr7_1:71568828-71568847 None:intergenic 55.0%
CGCTAAAGGAGTCAGGCCTG+AGG - chr7_1:71568106-71568125 Msa1035610:intron 60.0%
GGTGTAGGTGAGGCTTCAGC+TGG - chr7_1:71568638-71568657 Msa1035610:intron 60.0%
! CCACCAGCTGGTGAAGGCAT+TGG + chr7_1:71568725-71568744 None:intergenic 60.0%
CCAATGCCTTCACCAGCTGG+TGG - chr7_1:71568722-71568741 Msa1035610:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 71566704 71569303 71566704 ID=Msa1035610;Name=Msa1035610
chr7_1 mRNA 71566704 71569303 71566704 ID=Msa1035610-mRNA-1;Parent=Msa1035610;Name=Msa1035610-mRNA-1;_AED=0.10;_eAED=0.10;_QI=66|1|1|1|0.8|0.66|6|413|312
chr7_1 exon 71566704 71567362 71566704 ID=Msa1035610-mRNA-1:exon:17293;Parent=Msa1035610-mRNA-1
chr7_1 exon 71567868 71568032 71567868 ID=Msa1035610-mRNA-1:exon:17292;Parent=Msa1035610-mRNA-1
chr7_1 exon 71568147 71568374 71568147 ID=Msa1035610-mRNA-1:exon:17291;Parent=Msa1035610-mRNA-1
chr7_1 exon 71568830 71569078 71568830 ID=Msa1035610-mRNA-1:exon:17290;Parent=Msa1035610-mRNA-1
chr7_1 exon 71569167 71569232 71569167 ID=Msa1035610-mRNA-1:exon:17289;Parent=Msa1035610-mRNA-1
chr7_1 exon 71569253 71569303 71569253 ID=Msa1035610-mRNA-1:exon:17288;Parent=Msa1035610-mRNA-1
chr7_1 five_prime_UTR 71569253 71569303 71569253 ID=Msa1035610-mRNA-1:five_prime_utr;Parent=Msa1035610-mRNA-1
chr7_1 five_prime_UTR 71569218 71569232 71569218 ID=Msa1035610-mRNA-1:five_prime_utr;Parent=Msa1035610-mRNA-1
chr7_1 CDS 71569167 71569217 71569167 ID=Msa1035610-mRNA-1:cds;Parent=Msa1035610-mRNA-1
chr7_1 CDS 71568830 71569078 71568830 ID=Msa1035610-mRNA-1:cds;Parent=Msa1035610-mRNA-1
chr7_1 CDS 71568147 71568374 71568147 ID=Msa1035610-mRNA-1:cds;Parent=Msa1035610-mRNA-1
chr7_1 CDS 71567868 71568032 71567868 ID=Msa1035610-mRNA-1:cds;Parent=Msa1035610-mRNA-1
chr7_1 CDS 71567117 71567362 71567117 ID=Msa1035610-mRNA-1:cds;Parent=Msa1035610-mRNA-1
chr7_1 three_prime_UTR 71566704 71567116 71566704 ID=Msa1035610-mRNA-1:three_prime_utr;Parent=Msa1035610-mRNA-1
Gene Sequence

>Msa1035610

ATGACAACCTCGTTGGACACAGCTTCTCCTTCTCCTCTTCACATCAAACAGGATGATACAAACGTTGTTAATTCTTCTTCTCCTCAGTTCACTCCATCTTCCGATAAACGCTTCTGGAGCACTCTCCGTTGTAGAATTGACTCGCTTCTCGATAAACGCGGTCAACCCAAAATCTTAGATTCATTACAGAATGAAAGAGGAAAACGATTGAAGGAAGATTCGTTGTTGCTCATAAGAGGGTTTGACTCGGTTTCTAATACACTATCTCTTTTGTCTAATAATTTGGACAATGCCTTGCTGGGTGCAAGAGAATTGGGGAATCCACCCACATTAACTGATATATTCAAAAGCAAAATTGATCAGTCAGAAAACAATGAAGAAGAGAATTCAGAAGCAGAGAAAGAGAAAGAGGAGTCAAAGCAAGGAGTAAAGAGGAAAATTGATGAATTCTATGAAGAAAATGTTACAGAGTCACAAACAGAAAATGGGGAAAAGATGCATGAAAAGCATATCAAGAAAGCAAAAAATATTGCAGTTTCAATGGCAAGCAAAGCAGCTTCACTTGCAAGAGAATTGAAGTCTCTTAAATCAGATTTATGTTTTATGCAAGAAAGATGTGGTCTGCTTGAAGAAGAGAACCGAAGATTGCGTGACGGTTTCGCTAAAGGAGTCAGGCCTGAGGAAGATGATCTGGTGAGGCTTCAGCTGGAAGCACTTCTTGGTGAGAAGGCAAGACTAGCCAATGAAAATGCAAATCTGATGAGAGAAAACCAATGCCTTCACCAGCTGGTGGAGTATCATCAACATACTTCACAAGACCTCTCTGAGTCATATGAGCAAGTCATCCAAGGAATGTGCTTGGACTTCTCATCTCCACCACGATCAATTGCCGGAGAAGAGACAAGGGATGAAGATGGTGCTGATGATGATGAGAAATAG

Protein sequence

>Msa1035610

MTTSLDTASPSPLHIKQDDTNVVNSSSPQFTPSSDKRFWSTLRCRIDSLLDKRGQPKILDSLQNERGKRLKEDSLLLIRGFDSVSNTLSLLSNNLDNALLGARELGNPPTLTDIFKSKIDQSENNEEENSEAEKEKEESKQGVKRKIDEFYEENVTESQTENGEKMHEKHIKKAKNIAVSMASKAASLARELKSLKSDLCFMQERCGLLEEENRRLRDGFAKGVRPEEDDLVRLQLEALLGEKARLANENANLMRENQCLHQLVEYHQHTSQDLSESYEQVIQGMCLDFSSPPRSIAGEETRDEDGADDDEK*