AlfalfaGEDB | Msa0038940

M. sativa cultivar zhongmu-4 / Msa0038940

KEGG: K01534
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016040	Msa0038940	0.805037	1.619427e-49	-8.615850e-47
Msa0020540	Msa0038940	0.801477	8.837913e-49	-8.615850e-47
Msa0032980	Msa0038940	0.808587	2.877673e-50	-8.615850e-47
Msa0038940	Msa0048510	0.836296	1.017072e-56	-8.615850e-47
Msa0038940	Msa0062340	0.814154	1.779788e-51	-8.615850e-47
Msa0038940	Msa0074360	0.852734	3.800092e-61	-8.615850e-47
Msa0038940	Msa0075530	0.828646	8.006624e-55	-8.615850e-47
Msa0038940	Msa0077340	0.811212	7.838787e-51	-8.615850e-47
Msa0038940	Msa0077560	0.871445	6.795797e-67	-8.615850e-47
Msa0038940	Msa0078130	0.809658	1.697250e-50	-8.615850e-47
Msa0038940	Msa0094780	0.826092	3.279953e-54	-8.615850e-47
Msa0038940	Msa0094790	0.820936	5.269542e-53	-8.615850e-47
Msa0038940	Msa0122330	0.818817	1.607650e-52	-8.615850e-47
Msa0038940	Msa0123320	0.801487	8.798407e-49	-8.615850e-47
Msa0038940	Msa0125360	0.812179	4.828250e-51	-8.615850e-47
Msa0038940	Msa0133150	0.810504	1.115512e-50	-8.615850e-47
Msa0038940	Msa0140280	0.801146	1.033049e-48	-8.615850e-47
Msa0038940	Msa0159590	0.824968	6.053332e-54	-8.615850e-47
Msa0038940	Msa0159620	0.810449	1.146521e-50	-8.615850e-47
Msa0038940	Msa0168050	0.826582	2.506429e-54	-8.615850e-47
Msa0038940	Msa0181650	0.982188	1.877698e-154	-8.615850e-47
Msa0038940	Msa0185290	0.804141	2.490315e-49	-8.615850e-47
Msa0038940	Msa0190730	0.863511	2.363017e-64	-8.615850e-47
Msa0038940	Msa0204950	0.830728	2.494449e-55	-8.615850e-47
Msa0038940	Msa0213030	0.816694	4.845606e-52	-8.615850e-47
Msa0038940	Msa0225610	0.811768	5.933908e-51	-8.615850e-47
Msa0038940	Msa0232760	0.832246	1.054449e-55	-8.615850e-47
Msa0038940	Msa0233020	0.819992	8.680291e-53	-8.615850e-47
Msa0038940	Msa0233070	0.803619	3.197878e-49	-8.615850e-47
Msa0038940	Msa0242590	0.800482	1.411707e-48	-8.615850e-47
Msa0038940	Msa0249850	0.835988	1.217955e-56	-8.615850e-47
Msa0038940	Msa0269210	0.867694	1.132905e-65	-8.615850e-47
Msa0038940	Msa0272260	0.824274	8.819149e-54	-8.615850e-47
Msa0038940	Msa0274320	0.801377	9.265131e-49	-8.615850e-47
Msa0038940	Msa0280790	0.801469	8.875291e-49	-8.615850e-47
Msa0038940	Msa0281470	0.804249	2.365722e-49	-8.615850e-47
Msa0038940	Msa0298470	0.805028	1.626324e-49	-8.615850e-47
Msa0038940	Msa0298580	0.814860	1.242098e-51	-8.615850e-47
Msa0038940	Msa0301820	0.804160	2.468634e-49	-8.615850e-47
Msa0038940	Msa0307270	0.807011	6.223810e-50	-8.615850e-47
Msa0038940	Msa0320600	0.831806	1.354427e-55	-8.615850e-47
Msa0038940	Msa0343010	0.846589	1.975286e-59	-8.615850e-47
Msa0038940	Msa0367150	0.827142	1.841676e-54	-8.615850e-47
Msa0038940	Msa0367520	0.842899	1.950910e-58	-8.615850e-47
Msa0038940	Msa0368860	0.806900	6.569954e-50	-8.615850e-47
Msa0038940	Msa0373500	0.868092	8.438563e-66	-8.615850e-47
Msa0038940	Msa0373590	0.814340	1.619341e-51	-8.615850e-47
Msa0038940	Msa0377710	0.851325	9.552497e-61	-8.615850e-47
Msa0038940	Msa0379470	0.802061	6.707619e-49	-8.615850e-47
Msa0038940	Msa0380490	0.824890	6.314631e-54	-8.615850e-47
Msa0038940	Msa0380670	0.800353	1.499985e-48	-8.615850e-47
Msa0038940	Msa0409830	0.827666	1.379154e-54	-8.615850e-47
Msa0038940	Msa0414880	0.808292	3.326554e-50	-8.615850e-47
Msa0038940	Msa0416160	0.837895	3.968307e-57	-8.615850e-47
Msa0038940	Msa0419540	0.822706	2.052345e-53	-8.615850e-47
Msa0038940	Msa0430000	0.805689	1.182315e-49	-8.615850e-47
Msa0038940	Msa0432010	0.856514	3.055719e-62	-8.615850e-47
Msa0038940	Msa0436330	0.829937	3.891578e-55	-8.615850e-47
Msa0038940	Msa0454560	0.845947	2.954016e-59	-8.615850e-47
Msa0038940	Msa0459740	0.852208	5.366214e-61	-8.615850e-47
Msa0038940	Msa0462780	0.840224	9.889866e-58	-8.615850e-47
Msa0038940	Msa0465530	0.807522	4.850533e-50	-8.615850e-47
Msa0038940	Msa0466880	0.812289	4.569367e-51	-8.615850e-47
Msa0038940	Msa0468620	0.846095	2.694112e-59	-8.615850e-47
Msa0038940	Msa0481890	0.891189	4.985049e-74	-8.615850e-47
Msa0038940	Msa0500570	0.809244	2.082042e-50	-8.615850e-47
Msa0038940	Msa0500650	0.800582	1.347298e-48	-8.615850e-47
Msa0038940	Msa0502510	0.857208	1.908828e-62	-8.615850e-47
Msa0038940	Msa0511470	0.804449	2.148411e-49	-8.615850e-47
Msa0038940	Msa0514500	0.847916	8.540073e-60	-8.615850e-47
Msa0038940	Msa0520870	0.817698	2.881472e-52	-8.615850e-47
Msa0038940	Msa0521680	0.805524	1.280748e-49	-8.615850e-47
Msa0038940	Msa0529030	0.806342	8.618860e-50	-8.615850e-47
Msa0038940	Msa0531960	0.809585	1.759162e-50	-8.615850e-47
Msa0038940	Msa0534720	0.805841	1.098788e-49	-8.615850e-47
Msa0038940	Msa0545920	0.828699	7.776247e-55	-8.615850e-47
Msa0038940	Msa0556440	0.810440	1.151319e-50	-8.615850e-47
Msa0038940	Msa0567170	0.816618	5.039308e-52	-8.615850e-47
Msa0038940	Msa0574900	0.812888	3.380380e-51	-8.615850e-47
Msa0038940	Msa0577280	0.833505	5.130592e-56	-8.615850e-47
Msa0038940	Msa0577330	0.830604	2.673899e-55	-8.615850e-47
Msa0038940	Msa0577450	0.807752	4.334941e-50	-8.615850e-47
Msa0038940	Msa0577820	0.817838	2.678863e-52	-8.615850e-47
Msa0038940	Msa0580370	0.805264	1.451524e-49	-8.615850e-47
Msa0038940	Msa0580810	0.807937	3.960302e-50	-8.615850e-47
Msa0038940	Msa0590200	0.800499	1.400601e-48	-8.615850e-47
Msa0038940	Msa0601720	0.833609	4.833970e-56	-8.615850e-47
Msa0038940	Msa0606100	0.804088	2.555033e-49	-8.615850e-47
Msa0038940	Msa0607800	0.847950	8.359757e-60	-8.615850e-47
Msa0038940	Msa0621710	0.851956	6.330198e-61	-8.615850e-47
Msa0038940	Msa0622920	0.827750	1.316430e-54	-8.615850e-47
Msa0038940	Msa0624900	0.808536	2.951303e-50	-8.615850e-47
Msa0038940	Msa0641990	0.836898	7.141995e-57	-8.615850e-47
Msa0038940	Msa0648040	0.837528	4.929409e-57	-8.615850e-47
Msa0038940	Msa0657700	0.806848	6.739270e-50	-8.615850e-47
Msa0038940	Msa0658640	0.819131	1.364447e-52	-8.615850e-47
Msa0038940	Msa0666700	0.812613	3.882805e-51	-8.615850e-47
Msa0038940	Msa0681050	0.834783	2.454955e-56	-8.615850e-47
Msa0038940	Msa0690740	0.827163	1.820788e-54	-8.615850e-47
Msa0038940	Msa0694500	0.829326	5.478767e-55	-8.615850e-47
Msa0038940	Msa0702810	0.812774	3.579275e-51	-8.615850e-47
Msa0038940	Msa0703600	0.830689	2.549358e-55	-8.615850e-47
Msa0038940	Msa0709200	0.829931	3.905076e-55	-8.615850e-47
Msa0038940	Msa0709440	0.889748	1.834371e-73	-8.615850e-47
Msa0038940	Msa0709630	0.838042	3.637848e-57	-8.615850e-47
Msa0038940	Msa0714520	0.820132	8.063143e-53	-8.615850e-47
Msa0038940	Msa0714790	0.844922	5.597704e-59	-8.615850e-47
Msa0038940	Msa0716890	0.844965	5.452100e-59	-8.615850e-47
Msa0038940	Msa0717830	0.807823	4.187369e-50	-8.615850e-47
Msa0038940	Msa0722220	0.812207	4.760824e-51	-8.615850e-47
Msa0038940	Msa0735780	0.825104	5.623037e-54	-8.615850e-47
Msa0038940	Msa0743440	0.835961	1.237185e-56	-8.615850e-47
Msa0038940	Msa0745720	0.848398	6.286898e-60	-8.615850e-47
Msa0038940	Msa0754430	0.862186	6.056871e-64	-8.615850e-47
Msa0038940	Msa0754450	0.875183	3.766938e-68	-8.615850e-47
Msa0038940	Msa0755760	0.846242	2.456356e-59	-8.615850e-47
Msa0038940	Msa0756820	0.832672	8.271508e-56	-8.615850e-47
Msa0038940	Msa0758030	0.804886	1.741831e-49	-8.615850e-47
Msa0038940	Msa0758650	0.837880	4.003226e-57	-8.615850e-47
Msa0038940	Msa0763550	0.814404	1.567411e-51	-8.615850e-47
Msa0038940	Msa0773630	0.829649	4.573796e-55	-8.615850e-47
Msa0038940	Msa0777750	0.811089	8.334762e-51	-8.615850e-47
Msa0038940	Msa0780910	0.827670	1.376482e-54	-8.615850e-47
Msa0038940	Msa0783930	0.806355	8.562769e-50	-8.615850e-47
Msa0038940	Msa0787590	0.802729	4.884913e-49	-8.615850e-47
Msa0038940	Msa0795870	0.813501	2.478832e-51	-8.615850e-47
Msa0038940	Msa0804000	0.832523	9.002840e-56	-8.615850e-47
Msa0038940	Msa0805680	0.831464	1.644930e-55	-8.615850e-47
Msa0038940	Msa0811020	0.816966	4.209738e-52	-8.615850e-47
Msa0038940	Msa0818880	0.817369	3.418107e-52	-8.615850e-47
Msa0038940	Msa0821160	0.810411	1.168312e-50	-8.615850e-47
Msa0038940	Msa0824450	0.820084	8.266700e-53	-8.615850e-47
Msa0038940	Msa0828970	0.819151	1.349964e-52	-8.615850e-47
Msa0038940	Msa0833650	0.807688	4.473720e-50	-8.615850e-47
Msa0038940	Msa0835900	0.824559	7.557932e-54	-8.615850e-47
Msa0038940	Msa0837710	0.819638	1.045829e-52	-8.615850e-47
Msa0038940	Msa0842070	0.829127	6.123737e-55	-8.615850e-47
Msa0038940	Msa0843050	0.818511	1.886983e-52	-8.615850e-47
Msa0038940	Msa0855230	0.807071	6.046799e-50	-8.615850e-47
Msa0038940	Msa0863620	0.857112	2.037153e-62	-8.615850e-47
Msa0038940	Msa0867110	0.850285	1.874229e-60	-8.615850e-47
Msa0038940	Msa0878280	0.814522	1.476317e-51	-8.615850e-47
Msa0038940	Msa0879920	0.820723	5.899544e-53	-8.615850e-47
Msa0038940	Msa0888790	0.818886	1.551096e-52	-8.615850e-47
Msa0038940	Msa0931590	0.844063	9.532273e-59	-8.615850e-47
Msa0038940	Msa0989370	0.814741	1.320168e-51	-8.615850e-47
Msa0038940	Msa1033920	0.804958	1.682163e-49	-8.615850e-47
Msa0038940	Msa1034400	0.809660	1.695151e-50	-8.615850e-47
Msa0038940	Msa1035610	0.809403	1.924815e-50	-8.615850e-47
Msa0038940	Msa1037540	0.831920	1.269820e-55	-8.615850e-47
Msa0038940	Msa1042880	0.823110	1.652246e-53	-8.615850e-47
Msa0038940	Msa1059020	0.801419	9.086396e-49	-8.615850e-47
Msa0038940	Msa1072940	0.806840	6.765498e-50	-8.615850e-47
Msa0038940	Msa1074900	0.810021	1.417707e-50	-8.615850e-47
Msa0038940	Msa1084530	0.891147	5.180385e-74	-8.615850e-47
Msa0038940	Msa1092420	0.808502	3.001346e-50	-8.615850e-47
Msa0038940	Msa1114630	0.832927	7.147482e-56	-8.615850e-47
Msa0038940	Msa1125820	0.887143	1.848620e-72	-8.615850e-47
Msa0038940	Msa1125990	0.884427	1.936001e-71	-8.615850e-47
Msa0038940	Msa1127470	0.859035	5.463534e-63	-8.615850e-47
Msa0038940	Msa1130420	0.818880	1.555532e-52	-8.615850e-47
Msa0038940	Msa1132530	0.832638	8.432097e-56	-8.615850e-47
Msa0038940	Msa1132840	0.805609	1.229054e-49	-8.615850e-47
Msa0038940	Msa1159590	0.840859	6.744838e-58	-8.615850e-47
Msa0038940	Msa1160920	0.809863	1.533439e-50	-8.615850e-47
Msa0038940	Msa1171290	0.895427	9.686975e-76	-8.615850e-47
Msa0038940	Msa1192560	0.814488	1.502173e-51	-8.615850e-47
Msa0038940	Msa1192570	0.849719	2.700078e-60	-8.615850e-47
Msa0038940	Msa1192590	0.808895	2.473243e-50	-8.615850e-47
Msa0038940	Msa1201540	0.814116	1.814517e-51	-8.615850e-47
Msa0038940	Msa1201780	0.819769	9.761202e-53	-8.615850e-47
Msa0038940	Msa1208950	0.815404	9.407767e-52	-8.615850e-47
Msa0038940	Msa1211640	0.800803	1.214004e-48	-8.615850e-47
Msa0038940	Msa1213830	0.802763	4.807038e-49	-8.615850e-47
Msa0038940	Msa1214350	0.812174	4.840117e-51	-8.615850e-47
Msa0038940	Msa1215870	0.830816	2.373711e-55	-8.615850e-47
Msa0038940	Msa1218820	0.848643	5.377733e-60	-8.615850e-47
Msa0038940	Msa1226520	0.817588	3.050106e-52	-8.615850e-47
Msa0038940	Msa1254540	0.836568	8.670416e-57	-8.615850e-47
Msa0038940	Msa1263740	0.820895	5.386671e-53	-8.615850e-47
Msa0038940	Msa1263780	0.835309	1.808821e-56	-8.615850e-47
Msa0038940	Msa1263900	0.801468	8.877577e-49	-8.615850e-47
Msa0038940	Msa1294460	0.821363	4.201486e-53	-8.615850e-47
Msa0038940	Msa1300460	0.805574	1.249975e-49	-8.615850e-47
Msa0038940	Msa1301700	0.800548	1.368698e-48	-8.615850e-47
Msa0038940	Msa1306790	0.813245	2.822216e-51	-8.615850e-47
Msa0038940	Msa1307630	0.806972	6.345455e-50	-8.615850e-47
Msa0038940	Msa1332950	0.839581	1.454584e-57	-8.615850e-47
Msa0038940	Msa1343170	0.805420	1.346779e-49	-8.615850e-47
Msa0038940	Msa1362130	0.858848	6.214274e-63	-8.615850e-47
Msa0038940	Msa1365500	0.821115	4.793048e-53	-8.615850e-47
Msa0038940	Msa1366150	0.874203	8.114317e-68	-8.615850e-47
Msa0038940	Msa1367180	0.806247	9.026351e-50	-8.615850e-47
Msa0038940	Msa1368750	0.861436	1.027638e-63	-8.615850e-47
Msa0038940	Msa1374790	0.855951	4.469586e-62	-8.615850e-47
Msa0038940	Msa1381470	0.812057	5.133458e-51	-8.615850e-47
Msa0038940	Msa1384150	0.854658	1.063351e-61	-8.615850e-47
Msa0038940	Msa1387440	0.869247	3.572792e-66	-8.615850e-47
Msa0038940	Msa1397270	0.812053	5.144110e-51	-8.615850e-47
Msa0038940	Msa1405460	0.809863	1.533523e-50	-8.615850e-47
Msa0038940	Msa1429070	0.863875	1.821700e-64	-8.615850e-47
Msa0038940	Msa1432520	0.802568	5.274959e-49	-8.615850e-47
Msa0038940	Msa1445120	0.839961	1.158259e-57	-8.615850e-47
Msa0038940	Msa1446100	0.822548	2.233291e-53	-8.615850e-47
Msa0038940	Msa1450190	0.800730	1.256459e-48	-8.615850e-47
Msa0038940	Msa1451820	0.857345	1.738700e-62	-8.615850e-47
Msa0038940	Msa1454010	0.812291	4.564624e-51	-8.615850e-47
Msa0038940	Msa1459010	0.816798	4.592885e-52	-8.615850e-47
Msa0038940	Msa1465360	0.813751	2.184024e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0038940	MtrunA17_Chr1g0202751	96.691	272	9	0	1	272	1	272	0.0	540

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 69 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCACTCATTCACATAATT+TGG	0.078016	1_1:+68426707	Msa0038930:intron
GATAATATTGCTTAGAATAT+TGG	0.195303	1_1:-68426855	Msa0038940:three_prime_UTR
TCAACAATATTATCAGTTAA+AGG	0.201695	1_1:+68426749	Msa0038930:intron
TAACATGATCAATGGCATTT+TGG	0.230952	1_1:+68428050	None:intergenic
CAATTATTACTGTATTCTTT+TGG	0.246495	1_1:-68426941	Msa0038940:three_prime_UTR
AATGCCATTGATCATGTTAA+TGG	0.254040	1_1:-68428046	Msa0038940:intron
ATTGAAATCCTTGAAAATTC+TGG	0.276980	1_1:+68427092	Msa0038930:CDS
AACAATAGTGGGGTTGTTCT+TGG	0.286826	1_1:+68427750	None:intergenic
CCTATGATTGCAATTATTGC+TGG	0.293251	1_1:-68426654	Msa0038940:three_prime_UTR
TCTGGACTCTTGCAGCATAC+TGG	0.312031	1_1:+68427110	Msa0038930:CDS
TCAGTCTGATGATGCATTCC+TGG	0.314010	1_1:-68427195	Msa0038940:intron
CAGGCATCTCCTTCAATTCC+AGG	0.329164	1_1:+68427177	Msa0038930:CDS
TAGCTACTTTAACCGCAAAA+TGG	0.345953	1_1:-68428101	Msa0038940:exon
TGTGTACTTCATATTGTTGC+AGG	0.348192	1_1:+68426996	Msa0038930:intron
GCAGATGGAGACGGCATATC+AGG	0.349775	1_1:+68427146	Msa0038930:CDS
TTGCAGGAAAGATGAAATCT+AGG	0.354095	1_1:-68427903	Msa0038940:CDS
TTTCCATCTACTATATCAAT+AGG	0.355572	1_1:+68427835	None:intergenic
TTCTTGGACTTGAGTAGATT+TGG	0.362992	1_1:+68427766	None:intergenic
CGCTCTTCGGCGATTGCATC+AGG	0.383202	1_1:+68427529	None:intergenic
GGCATATCAGGCAACTCTTC+AGG	0.388449	1_1:+68427158	Msa0038930:CDS
GTGAAATTGCAATCGAAAGC+TGG	0.396566	1_1:+68427059	Msa0038930:CDS
TTTAATTGTGCTACCATTGA+AGG	0.397307	1_1:+68427807	None:intergenic
AGCACTCATTCACATAATTT+GGG	0.398276	1_1:+68426708	Msa0038930:intron
ATCCTTATGTAGAACAATAG+TGG	0.407861	1_1:+68427738	None:intergenic
CTGGACTCTTGCAGCATACT+GGG	0.413396	1_1:+68427111	Msa0038930:CDS
AAGCCTATTGATATAGTAGA+TGG	0.426272	1_1:-68427838	Msa0038940:CDS
TCCTTATGTAGAACAATAGT+GGG	0.435174	1_1:+68427739	None:intergenic
GCTTCTAAGAAGTCAAATAC+TGG	0.435698	1_1:-68427655	Msa0038940:CDS
CCAGCAATAATTGCAATCAT+AGG	0.437264	1_1:+68426654	Msa0038930:intron
ATCAATAGGCTTCACTGCAT+TGG	0.447906	1_1:+68427849	None:intergenic
CTTGAAATCAACAAAAGAAC+TGG	0.448659	1_1:-68427685	Msa0038940:CDS
ATTATGAAACATCCGCTCTT+CGG	0.450015	1_1:+68427516	None:intergenic
CCCCACTATTGTTCTACATA+AGG	0.466740	1_1:-68427740	Msa0038940:CDS
ACCTTCAGTTTGCTAAAAGC+AGG	0.486566	1_1:+68427291	None:intergenic
AACTGATAATATTGTTGAGA+AGG	0.486615	1_1:-68426744	Msa0038940:three_prime_UTR
TGATGCATTCCTGGAATTGA+AGG	0.486995	1_1:-68427186	Msa0038940:CDS
AAAATCACAAAGTCATGCAT+TGG	0.496042	1_1:-68427479	Msa0038940:CDS
TATTGTTCTACATAAGGATA+AGG	0.500681	1_1:-68427734	Msa0038940:CDS
ATATTATCAGTTAAAGGTAA+TGG	0.505834	1_1:+68426755	Msa0038930:intron
GATGGAAAGAAGGCCTTCAA+TGG	0.509301	1_1:-68427820	Msa0038940:CDS
CACAAAATACTATCAAGAAA+AGG	0.510043	1_1:+68426682	Msa0038930:intron
AATACCATTAACATGATCAA+TGG	0.510674	1_1:+68428042	None:intergenic
TGCAGGAAAGATGAAATCTA+GGG	0.516990	1_1:-68427902	Msa0038940:CDS
AATATCTAAAACAAACAGTA+AGG	0.520906	1_1:+68426615	Msa0038930:intron
TTTGGTGTTTGATTGACAGA+GGG	0.545419	1_1:+68427784	None:intergenic
TAAGGAAGTTGTTTCTGCCA+AGG	0.545987	1_1:-68427716	Msa0038940:CDS
TGAAATTGCAATCGAAAGCT+GGG	0.549449	1_1:+68427060	Msa0038930:CDS
AGAAGTCAAATACTGGCAGC+AGG	0.552216	1_1:-68427648	Msa0038940:CDS
TGATATAGTAGATGGAAAGA+AGG	0.559608	1_1:-68427830	Msa0038940:CDS
CTTTAAAAGAACTAGTGTCC+AGG	0.560073	1_1:+68427566	None:intergenic
TTTCAAGACTGCTATACTTG+GGG	0.563438	1_1:-68427443	Msa0038940:CDS
AAGGAAGTTGTTTCTGCCAA+GGG	0.563895	1_1:-68427715	Msa0038940:CDS
ATTTGGTGTTTGATTGACAG+AGG	0.569171	1_1:+68427783	None:intergenic
GGAAAGATGAAATCTAGGGC+TGG	0.572546	1_1:-68427898	Msa0038940:CDS
GGGGAACCATGCTTAGCAGA+TGG	0.575621	1_1:+68427131	Msa0038930:CDS
CCGTCTCCATCTGCTAAGCA+TGG	0.588140	1_1:-68427137	Msa0038940:CDS
AAGACTGCTATACTTGGGGA+TGG	0.598286	1_1:-68427439	Msa0038940:intron
CTGATGCAATCGCCGAAGAG+CGG	0.620812	1_1:-68427528	Msa0038940:CDS
AATAATTGCCATCACAAGAG+TGG	0.626500	1_1:+68426956	Msa0038930:intron
AATAATTGCAATCATAGGAG+TGG	0.634076	1_1:+68426659	Msa0038930:intron
CCATGCTTAGCAGATGGAGA+CGG	0.635945	1_1:+68427137	Msa0038930:CDS
AATAGATGCCAACACAAGAG+TGG	0.651321	1_1:+68426810	Msa0038930:intron
AAGATGAAATCTAGGGCTGG+AGG	0.656807	1_1:-68427895	Msa0038940:CDS
ATATTGTGCCACTCTTGTGA+TGG	0.665318	1_1:-68426964	Msa0038940:three_prime_UTR
TGGACTCTTGCAGCATACTG+GGG	0.672423	1_1:+68427112	Msa0038930:CDS
GCTGGAGGAAGAAAACCACT+TGG	0.686170	1_1:-68427880	Msa0038940:CDS
TTAAAGGTAATGGCTAAACA+AGG	0.692527	1_1:+68426765	Msa0038930:intron
CCTTATGTAGAACAATAGTG+GGG	0.709845	1_1:+68427740	None:intergenic
GCATTGGATAGATCACCAAG+TGG	0.747744	1_1:+68427865	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAATCATATATTGTAAAA+GGG	+	chr1_1:68426984-68427003	Msa0038930:intron	10.0%
!!	AAAAATCATATATTGTAAAA+GGG	+	chr1_1:68426984-68427003	Msa0038930:intron	10.0%
!!	CAAAAATCATATATTGTAAA+AGG	+	chr1_1:68426985-68427004	Msa0038930:intron	15.0%
!!	CAAAAATCATATATTGTAAA+AGG	+	chr1_1:68426985-68427004	Msa0038930:intron	15.0%
!!	ATTCTTTCTTTAATGTTGAT+TGG	-	chr1_1:68426688-68426707	Msa0038940:three_prime_UTR	20.0%
!!!	AAAGAAATGTATTGATTGTT+GGG	-	chr1_1:68426806-68426825	Msa0038940:three_prime_UTR	20.0%
!!!	TATGATTTTTGTGTTTACAT+TGG	-	chr1_1:68426869-68426888	Msa0038940:three_prime_UTR	20.0%
!!!	AAATCGTAAGTTTTCTTTTT+GGG	-	chr1_1:68427036-68427055	Msa0038940:CDS	20.0%
!!	AATAGTTGAAAAATCAAAAC+AGG	+	chr1_1:68428333-68428352	None:intergenic	20.0%
!!!	GTTTTGATTTTTCAACTATT+TGG	-	chr1_1:68428333-68428352	Msa0038940:intron	20.0%
!!!	CAATTATTACTGTATTCTTT+TGG	-	chr1_1:68428619-68428638	Msa0038940:intron	20.0%
!!	GATAATATTGCTTAGAATAT+TGG	-	chr1_1:68428705-68428724	Msa0038940:intron	20.0%
!!!	ATCTATTGCTGTATTTTTTT+GGG	-	chr1_1:68428766-68428785	Msa0038940:intron	20.0%
!!	ATATTATCAGTTAAAGGTAA+TGG	+	chr1_1:68428808-68428827	None:intergenic	20.0%
!!	TCAACAATATTATCAGTTAA+AGG	+	chr1_1:68428814-68428833	None:intergenic	20.0%
!!!	AATATCTAAAACAAACAGTA+AGG	+	chr1_1:68428948-68428967	None:intergenic	20.0%
!!	ATTCTTTCTTTAATGTTGAT+TGG	-	chr1_1:68426688-68426707	Msa0038940:three_prime_UTR	20.0%
!!!	AAAGAAATGTATTGATTGTT+GGG	-	chr1_1:68426806-68426825	Msa0038940:three_prime_UTR	20.0%
!!!	TATGATTTTTGTGTTTACAT+TGG	-	chr1_1:68426869-68426888	Msa0038940:three_prime_UTR	20.0%
!!!	AAATCGTAAGTTTTCTTTTT+GGG	-	chr1_1:68427036-68427055	Msa0038940:CDS	20.0%
!!	AATAGTTGAAAAATCAAAAC+AGG	+	chr1_1:68428333-68428352	None:intergenic	20.0%
!!!	GTTTTGATTTTTCAACTATT+TGG	-	chr1_1:68428333-68428352	Msa0038940:intron	20.0%
!!!	CAATTATTACTGTATTCTTT+TGG	-	chr1_1:68428619-68428638	Msa0038940:intron	20.0%
!!	GATAATATTGCTTAGAATAT+TGG	-	chr1_1:68428705-68428724	Msa0038940:intron	20.0%
!!!	ATCTATTGCTGTATTTTTTT+GGG	-	chr1_1:68428766-68428785	Msa0038940:intron	20.0%
!!	ATATTATCAGTTAAAGGTAA+TGG	+	chr1_1:68428808-68428827	None:intergenic	20.0%
!!	TCAACAATATTATCAGTTAA+AGG	+	chr1_1:68428814-68428833	None:intergenic	20.0%
!!!	AATATCTAAAACAAACAGTA+AGG	+	chr1_1:68428948-68428967	None:intergenic	20.0%
!!	TTTCTTTAATGTTGATTGGT+AGG	-	chr1_1:68426692-68426711	Msa0038940:three_prime_UTR	25.0%
!!!	CAAAGAAATGTATTGATTGT+TGG	-	chr1_1:68426805-68426824	Msa0038940:three_prime_UTR	25.0%
!!!	TTTACATTGGATTTTGATGA+AGG	-	chr1_1:68426882-68426901	Msa0038940:three_prime_UTR	25.0%
!!	GAAATCGTAAGTTTTCTTTT+TGG	-	chr1_1:68427035-68427054	Msa0038940:CDS	25.0%
!!	GGTTTCAAACTTTAGATTTT+GGG	-	chr1_1:68427057-68427076	Msa0038940:CDS	25.0%
!	TGAATTCATAACAATGTTCA+TGG	+	chr1_1:68427218-68427237	None:intergenic	25.0%
!	GTAAAATTAATCAGTTTCAG+AGG	+	chr1_1:68427257-68427276	None:intergenic	25.0%
!!	TATGTGAAAGATTTCTAAGA+TGG	-	chr1_1:68427395-68427414	Msa0038940:intron	25.0%
!	AATACCATTAACATGATCAA+TGG	+	chr1_1:68427521-68427540	None:intergenic	25.0%
!!	TCATGTTAATGGTATTTTTC+TGG	-	chr1_1:68427525-68427544	Msa0038940:CDS	25.0%
!	AATTGTTTATGTGTGTAGAA+TGG	-	chr1_1:68427577-68427596	Msa0038940:CDS	25.0%
!	TTTCCATCTACTATATCAAT+AGG	+	chr1_1:68427728-68427747	None:intergenic	25.0%
!	TATTGTTCTACATAAGGATA+AGG	-	chr1_1:68427826-68427845	Msa0038940:CDS	25.0%
!	TGTACCTGATATGAAAAATA+AGG	-	chr1_1:68427967-68427986	Msa0038940:intron	25.0%
!!	AGATTCTGTTATGGTAATTT+TGG	-	chr1_1:68428166-68428185	Msa0038940:intron	25.0%
!	ATACATAACTTGATCAGATT+TGG	-	chr1_1:68428217-68428236	Msa0038940:intron	25.0%
!	ATTGAAATCCTTGAAAATTC+TGG	+	chr1_1:68428471-68428490	None:intergenic	25.0%
!!!	AATTTTCAAGGATTTCAATG+TGG	-	chr1_1:68428472-68428491	Msa0038940:intron	25.0%
!!!	ATTTTCAAGGATTTCAATGT+GGG	-	chr1_1:68428473-68428492	Msa0038940:intron	25.0%
!!!	AATCAGTTTTTAGACGATTT+GGG	+	chr1_1:68428540-68428559	None:intergenic	25.0%
!!!	CATCTATTGCTGTATTTTTT+TGG	-	chr1_1:68428765-68428784	Msa0038940:intron	25.0%
!	AACTGATAATATTGTTGAGA+AGG	-	chr1_1:68428816-68428835	Msa0038940:intron	25.0%
!	CACAAAATACTATCAAGAAA+AGG	+	chr1_1:68428881-68428900	None:intergenic	25.0%
!!	TTTCTTTAATGTTGATTGGT+AGG	-	chr1_1:68426692-68426711	Msa0038940:three_prime_UTR	25.0%
!!!	CAAAGAAATGTATTGATTGT+TGG	-	chr1_1:68426805-68426824	Msa0038940:three_prime_UTR	25.0%
!!!	TTTACATTGGATTTTGATGA+AGG	-	chr1_1:68426882-68426901	Msa0038940:three_prime_UTR	25.0%
!!	GAAATCGTAAGTTTTCTTTT+TGG	-	chr1_1:68427035-68427054	Msa0038940:CDS	25.0%
!!	GGTTTCAAACTTTAGATTTT+GGG	-	chr1_1:68427057-68427076	Msa0038940:CDS	25.0%
!	TGAATTCATAACAATGTTCA+TGG	+	chr1_1:68427218-68427237	None:intergenic	25.0%
!	GTAAAATTAATCAGTTTCAG+AGG	+	chr1_1:68427257-68427276	None:intergenic	25.0%
!!	TATGTGAAAGATTTCTAAGA+TGG	-	chr1_1:68427395-68427414	Msa0038940:intron	25.0%
!	AATACCATTAACATGATCAA+TGG	+	chr1_1:68427521-68427540	None:intergenic	25.0%
!!	TCATGTTAATGGTATTTTTC+TGG	-	chr1_1:68427525-68427544	Msa0038940:CDS	25.0%
!	AATTGTTTATGTGTGTAGAA+TGG	-	chr1_1:68427577-68427596	Msa0038940:CDS	25.0%
!	TTTCCATCTACTATATCAAT+AGG	+	chr1_1:68427728-68427747	None:intergenic	25.0%
!	TATTGTTCTACATAAGGATA+AGG	-	chr1_1:68427826-68427845	Msa0038940:CDS	25.0%
!	TGTACCTGATATGAAAAATA+AGG	-	chr1_1:68427967-68427986	Msa0038940:intron	25.0%
!!	AGATTCTGTTATGGTAATTT+TGG	-	chr1_1:68428166-68428185	Msa0038940:intron	25.0%
!	ATACATAACTTGATCAGATT+TGG	-	chr1_1:68428217-68428236	Msa0038940:intron	25.0%
!	ATTGAAATCCTTGAAAATTC+TGG	+	chr1_1:68428471-68428490	None:intergenic	25.0%
!!!	AATTTTCAAGGATTTCAATG+TGG	-	chr1_1:68428472-68428491	Msa0038940:intron	25.0%
!!!	ATTTTCAAGGATTTCAATGT+GGG	-	chr1_1:68428473-68428492	Msa0038940:intron	25.0%
!!!	AATCAGTTTTTAGACGATTT+GGG	+	chr1_1:68428540-68428559	None:intergenic	25.0%
!!!	CATCTATTGCTGTATTTTTT+TGG	-	chr1_1:68428765-68428784	Msa0038940:intron	25.0%
!	AACTGATAATATTGTTGAGA+AGG	-	chr1_1:68428816-68428835	Msa0038940:intron	25.0%
!	CACAAAATACTATCAAGAAA+AGG	+	chr1_1:68428881-68428900	None:intergenic	25.0%
!	GTTTACATTCAAGTTAGATG+AGG	-	chr1_1:68427006-68427025	Msa0038940:exon	30.0%
!	GGGTTTCAAACTTTAGATTT+TGG	-	chr1_1:68427056-68427075	Msa0038940:CDS	30.0%
!!!	AGATTTTGGGTTTCTTTTGA+TGG	-	chr1_1:68427070-68427089	Msa0038940:CDS	30.0%
	TGGTTGGGAAATTTAAATGT+TGG	-	chr1_1:68427090-68427109	Msa0038940:CDS	30.0%
	GGTTGGGAAATTTAAATGTT+GGG	-	chr1_1:68427091-68427110	Msa0038940:CDS	30.0%
!!	GGACTTTTAATTATGCAGAA+AGG	+	chr1_1:68427197-68427216	Msa0038930:CDS	30.0%
!	AACCCTTTTACAATATTTGC+AGG	-	chr1_1:68427421-68427440	Msa0038940:intron	30.0%
!	ACCCTTTTACAATATTTGCA+GGG	-	chr1_1:68427422-68427441	Msa0038940:intron	30.0%
	ACCCTGCAAATATTGTAAAA+GGG	+	chr1_1:68427426-68427445	None:intergenic	30.0%
!	TAACATGATCAATGGCATTT+TGG	+	chr1_1:68427513-68427532	None:intergenic	30.0%
	AATGCCATTGATCATGTTAA+TGG	-	chr1_1:68427514-68427533	Msa0038940:CDS	30.0%
	CTACACACATAAACAATTGA+TGG	+	chr1_1:68427575-68427594	None:intergenic	30.0%
!	TCTATAAAGACAGATTTTGC+AGG	-	chr1_1:68427641-68427660	Msa0038940:CDS	30.0%
	AAGCCTATTGATATAGTAGA+TGG	-	chr1_1:68427722-68427741	Msa0038940:CDS	30.0%
	TGATATAGTAGATGGAAAGA+AGG	-	chr1_1:68427730-68427749	Msa0038940:CDS	30.0%
	TTTAATTGTGCTACCATTGA+AGG	+	chr1_1:68427756-68427775	None:intergenic	30.0%
	TCCTTATGTAGAACAATAGT+GGG	+	chr1_1:68427824-68427843	None:intergenic	30.0%
	ATCCTTATGTAGAACAATAG+TGG	+	chr1_1:68427825-68427844	None:intergenic	30.0%
!!!	GATTTCAAGATTTTTTCCCT+TGG	+	chr1_1:68427864-68427883	None:intergenic	30.0%
	CTTGAAATCAACAAAAGAAC+TGG	-	chr1_1:68427875-68427894	Msa0038940:CDS	30.0%
!!!	CTGTCCTTATTTTTCATATC+AGG	+	chr1_1:68427974-68427993	None:intergenic	30.0%
!!	TGGACACTAGTTCTTTTAAA+GGG	-	chr1_1:68427996-68428015	Msa0038940:intron	30.0%
	AAAATCACAAAGTCATGCAT+TGG	-	chr1_1:68428081-68428100	Msa0038940:CDS	30.0%
!!!	TTTTTCAAGACTGCTATACT+TGG	-	chr1_1:68428115-68428134	Msa0038940:five_prime_UTR	30.0%
!!	TTTTCAAGACTGCTATACTT+GGG	-	chr1_1:68428116-68428135	Msa0038940:five_prime_UTR	30.0%
!	ACTGATTCTAGATTCTGTTA+TGG	-	chr1_1:68428157-68428176	Msa0038940:intron	30.0%
!!	GAATCAGTTTTTAGACGATT+TGG	+	chr1_1:68428541-68428560	None:intergenic	30.0%
!!	TCTTTTGGAGATGTCTTTAA+TGG	-	chr1_1:68428634-68428653	Msa0038940:intron	30.0%
!	TTAAAGGTAATGGCTAAACA+AGG	+	chr1_1:68428798-68428817	None:intergenic	30.0%
	AGCACTCATTCACATAATTT+GGG	+	chr1_1:68428855-68428874	None:intergenic	30.0%
	AAGCACTCATTCACATAATT+TGG	+	chr1_1:68428856-68428875	None:intergenic	30.0%
	AATAATTGCAATCATAGGAG+TGG	+	chr1_1:68428904-68428923	None:intergenic	30.0%
!	GTTTACATTCAAGTTAGATG+AGG	-	chr1_1:68427006-68427025	Msa0038940:exon	30.0%
!	GGGTTTCAAACTTTAGATTT+TGG	-	chr1_1:68427056-68427075	Msa0038940:CDS	30.0%
!!!	AGATTTTGGGTTTCTTTTGA+TGG	-	chr1_1:68427070-68427089	Msa0038940:CDS	30.0%
	TGGTTGGGAAATTTAAATGT+TGG	-	chr1_1:68427090-68427109	Msa0038940:CDS	30.0%
	GGTTGGGAAATTTAAATGTT+GGG	-	chr1_1:68427091-68427110	Msa0038940:CDS	30.0%
!!	GGACTTTTAATTATGCAGAA+AGG	+	chr1_1:68427197-68427216	Msa0038930:CDS	30.0%
!	AACCCTTTTACAATATTTGC+AGG	-	chr1_1:68427421-68427440	Msa0038940:intron	30.0%
!	ACCCTTTTACAATATTTGCA+GGG	-	chr1_1:68427422-68427441	Msa0038940:intron	30.0%
	ACCCTGCAAATATTGTAAAA+GGG	+	chr1_1:68427426-68427445	None:intergenic	30.0%
!	TAACATGATCAATGGCATTT+TGG	+	chr1_1:68427513-68427532	None:intergenic	30.0%
	AATGCCATTGATCATGTTAA+TGG	-	chr1_1:68427514-68427533	Msa0038940:CDS	30.0%
	CTACACACATAAACAATTGA+TGG	+	chr1_1:68427575-68427594	None:intergenic	30.0%
!	TCTATAAAGACAGATTTTGC+AGG	-	chr1_1:68427641-68427660	Msa0038940:CDS	30.0%
	AAGCCTATTGATATAGTAGA+TGG	-	chr1_1:68427722-68427741	Msa0038940:CDS	30.0%
	TGATATAGTAGATGGAAAGA+AGG	-	chr1_1:68427730-68427749	Msa0038940:CDS	30.0%
	TTTAATTGTGCTACCATTGA+AGG	+	chr1_1:68427756-68427775	None:intergenic	30.0%
	TCCTTATGTAGAACAATAGT+GGG	+	chr1_1:68427824-68427843	None:intergenic	30.0%
	ATCCTTATGTAGAACAATAG+TGG	+	chr1_1:68427825-68427844	None:intergenic	30.0%
!!!	GATTTCAAGATTTTTTCCCT+TGG	+	chr1_1:68427864-68427883	None:intergenic	30.0%
	CTTGAAATCAACAAAAGAAC+TGG	-	chr1_1:68427875-68427894	Msa0038940:CDS	30.0%
!!!	CTGTCCTTATTTTTCATATC+AGG	+	chr1_1:68427974-68427993	None:intergenic	30.0%
!!	TGGACACTAGTTCTTTTAAA+GGG	-	chr1_1:68427996-68428015	Msa0038940:intron	30.0%
	AAAATCACAAAGTCATGCAT+TGG	-	chr1_1:68428081-68428100	Msa0038940:CDS	30.0%
!!!	TTTTTCAAGACTGCTATACT+TGG	-	chr1_1:68428115-68428134	Msa0038940:five_prime_UTR	30.0%
!!	TTTTCAAGACTGCTATACTT+GGG	-	chr1_1:68428116-68428135	Msa0038940:five_prime_UTR	30.0%
!	ACTGATTCTAGATTCTGTTA+TGG	-	chr1_1:68428157-68428176	Msa0038940:intron	30.0%
!!	GAATCAGTTTTTAGACGATT+TGG	+	chr1_1:68428541-68428560	None:intergenic	30.0%
!!	TCTTTTGGAGATGTCTTTAA+TGG	-	chr1_1:68428634-68428653	Msa0038940:intron	30.0%
!	TTAAAGGTAATGGCTAAACA+AGG	+	chr1_1:68428798-68428817	None:intergenic	30.0%
	AGCACTCATTCACATAATTT+GGG	+	chr1_1:68428855-68428874	None:intergenic	30.0%
	AAGCACTCATTCACATAATT+TGG	+	chr1_1:68428856-68428875	None:intergenic	30.0%
	AATAATTGCAATCATAGGAG+TGG	+	chr1_1:68428904-68428923	None:intergenic	30.0%
!	GAAACCCTAGGTTTTCATTT+GGG	-	chr1_1:68426911-68426930	Msa0038940:three_prime_UTR	35.0%
!	AAACCCTAGGTTTTCATTTG+GGG	-	chr1_1:68426912-68426931	Msa0038940:three_prime_UTR	35.0%
!!	TTTGGGTTTCTTTTGATGGT+TGG	-	chr1_1:68427074-68427093	Msa0038940:CDS	35.0%
!!	TTGGGTTTCTTTTGATGGTT+GGG	-	chr1_1:68427075-68427094	Msa0038940:CDS	35.0%
	ATTCTTTCCGAAGAATCAGA+CGG	-	chr1_1:68427161-68427180	Msa0038940:CDS	35.0%
	AAATTCTCCGTCTGATTCTT+CGG	+	chr1_1:68427171-68427190	Msa0038930:CDS	35.0%
	CACCCTGCAAATATTGTAAA+AGG	+	chr1_1:68427427-68427446	None:intergenic	35.0%
!	TAGCTACTTTAACCGCAAAA+TGG	-	chr1_1:68427459-68427478	Msa0038940:CDS	35.0%
	TTTATGTGTGTAGAATGGCT+AGG	-	chr1_1:68427582-68427601	Msa0038940:CDS	35.0%
	TTGCAGGAAAGATGAAATCT+AGG	-	chr1_1:68427657-68427676	Msa0038940:CDS	35.0%
	TGCAGGAAAGATGAAATCTA+GGG	-	chr1_1:68427658-68427677	Msa0038940:CDS	35.0%
!!	TTTGGTGTTTGATTGACAGA+GGG	+	chr1_1:68427779-68427798	None:intergenic	35.0%
!!	ATTTGGTGTTTGATTGACAG+AGG	+	chr1_1:68427780-68427799	None:intergenic	35.0%
	TTCTTGGACTTGAGTAGATT+TGG	+	chr1_1:68427797-68427816	None:intergenic	35.0%
	CCTTATGTAGAACAATAGTG+GGG	+	chr1_1:68427823-68427842	None:intergenic	35.0%
!	GCTTCTAAGAAGTCAAATAC+TGG	-	chr1_1:68427905-68427924	Msa0038940:CDS	35.0%
	TATGAAAAATAAGGACAGCC+TGG	-	chr1_1:68427976-68427995	Msa0038940:intron	35.0%
!	CTTTAAAAGAACTAGTGTCC+AGG	+	chr1_1:68427997-68428016	None:intergenic	35.0%
!!	CTGGACACTAGTTCTTTTAA+AGG	-	chr1_1:68427995-68428014	Msa0038940:intron	35.0%
	ATTATGAAACATCCGCTCTT+CGG	+	chr1_1:68428047-68428066	None:intergenic	35.0%
	TTTCAAGACTGCTATACTTG+GGG	-	chr1_1:68428117-68428136	Msa0038940:five_prime_UTR	35.0%
	TGAAATTGCAATCGAAAGCT+GGG	+	chr1_1:68428503-68428522	None:intergenic	35.0%
	TGTGTACTTCATATTGTTGC+AGG	+	chr1_1:68428567-68428586	None:intergenic	35.0%
	AATAATTGCCATCACAAGAG+TGG	+	chr1_1:68428607-68428626	None:intergenic	35.0%
	CCAGCAATAATTGCAATCAT+AGG	+	chr1_1:68428909-68428928	None:intergenic	35.0%
	CCTATGATTGCAATTATTGC+TGG	-	chr1_1:68428906-68428925	Msa0038940:intron	35.0%
!	GAAACCCTAGGTTTTCATTT+GGG	-	chr1_1:68426911-68426930	Msa0038940:three_prime_UTR	35.0%
!	AAACCCTAGGTTTTCATTTG+GGG	-	chr1_1:68426912-68426931	Msa0038940:three_prime_UTR	35.0%
!!	TTTGGGTTTCTTTTGATGGT+TGG	-	chr1_1:68427074-68427093	Msa0038940:CDS	35.0%
!!	TTGGGTTTCTTTTGATGGTT+GGG	-	chr1_1:68427075-68427094	Msa0038940:CDS	35.0%
	ATTCTTTCCGAAGAATCAGA+CGG	-	chr1_1:68427161-68427180	Msa0038940:CDS	35.0%
	AAATTCTCCGTCTGATTCTT+CGG	+	chr1_1:68427171-68427190	Msa0038930:CDS	35.0%
	CACCCTGCAAATATTGTAAA+AGG	+	chr1_1:68427427-68427446	None:intergenic	35.0%
!	TAGCTACTTTAACCGCAAAA+TGG	-	chr1_1:68427459-68427478	Msa0038940:CDS	35.0%
	TTTATGTGTGTAGAATGGCT+AGG	-	chr1_1:68427582-68427601	Msa0038940:CDS	35.0%
	TTGCAGGAAAGATGAAATCT+AGG	-	chr1_1:68427657-68427676	Msa0038940:CDS	35.0%
	TGCAGGAAAGATGAAATCTA+GGG	-	chr1_1:68427658-68427677	Msa0038940:CDS	35.0%
!!	TTTGGTGTTTGATTGACAGA+GGG	+	chr1_1:68427779-68427798	None:intergenic	35.0%
!!	ATTTGGTGTTTGATTGACAG+AGG	+	chr1_1:68427780-68427799	None:intergenic	35.0%
	TTCTTGGACTTGAGTAGATT+TGG	+	chr1_1:68427797-68427816	None:intergenic	35.0%
	CCTTATGTAGAACAATAGTG+GGG	+	chr1_1:68427823-68427842	None:intergenic	35.0%
!	GCTTCTAAGAAGTCAAATAC+TGG	-	chr1_1:68427905-68427924	Msa0038940:CDS	35.0%
	TATGAAAAATAAGGACAGCC+TGG	-	chr1_1:68427976-68427995	Msa0038940:intron	35.0%
!	CTTTAAAAGAACTAGTGTCC+AGG	+	chr1_1:68427997-68428016	None:intergenic	35.0%
!!	CTGGACACTAGTTCTTTTAA+AGG	-	chr1_1:68427995-68428014	Msa0038940:intron	35.0%
	ATTATGAAACATCCGCTCTT+CGG	+	chr1_1:68428047-68428066	None:intergenic	35.0%
	TTTCAAGACTGCTATACTTG+GGG	-	chr1_1:68428117-68428136	Msa0038940:five_prime_UTR	35.0%
	TGAAATTGCAATCGAAAGCT+GGG	+	chr1_1:68428503-68428522	None:intergenic	35.0%
	TGTGTACTTCATATTGTTGC+AGG	+	chr1_1:68428567-68428586	None:intergenic	35.0%
	AATAATTGCCATCACAAGAG+TGG	+	chr1_1:68428607-68428626	None:intergenic	35.0%
	CCAGCAATAATTGCAATCAT+AGG	+	chr1_1:68428909-68428928	None:intergenic	35.0%
	CCTATGATTGCAATTATTGC+TGG	-	chr1_1:68428906-68428925	Msa0038940:intron	35.0%
!	TTCCACTGTTTGTTAATCGC+TGG	-	chr1_1:68426744-68426763	Msa0038940:three_prime_UTR	40.0%
	TTCCAGCGATTAACAAACAG+TGG	+	chr1_1:68426749-68426768	Msa0038930:intron	40.0%
	GGGTTTGTCTGCACTTTATT+AGG	-	chr1_1:68426826-68426845	Msa0038940:three_prime_UTR	40.0%
	TGAAGGAAAATCGAAACCCT+AGG	-	chr1_1:68426899-68426918	Msa0038940:three_prime_UTR	40.0%
!	CGAAACCCTAGGTTTTCATT+TGG	-	chr1_1:68426910-68426929	Msa0038940:three_prime_UTR	40.0%
	AAGCCCCAAATGAAAACCTA+GGG	+	chr1_1:68426918-68426937	Msa0038930:intron	40.0%
!	TTCATTTGGGGCTTCACAAT+TGG	-	chr1_1:68426924-68426943	Msa0038940:three_prime_UTR	40.0%
!	TCATTTGGGGCTTCACAATT+GGG	-	chr1_1:68426925-68426944	Msa0038940:three_prime_UTR	40.0%
!	GGCTTCACAATTGGGATTTT+GGG	-	chr1_1:68426933-68426952	Msa0038940:three_prime_UTR	40.0%
!	GCTTCACAATTGGGATTTTG+GGG	-	chr1_1:68426934-68426953	Msa0038940:three_prime_UTR	40.0%
!!!	GGATTTTGGGGTTTCTTTTG+TGG	-	chr1_1:68426946-68426965	Msa0038940:three_prime_UTR	40.0%
	ATCAATAGGCTTCACTGCAT+TGG	+	chr1_1:68427714-68427733	None:intergenic	40.0%
!	AACAATAGTGGGGTTGTTCT+TGG	+	chr1_1:68427813-68427832	None:intergenic	40.0%
	CCCCACTATTGTTCTACATA+AGG	-	chr1_1:68427820-68427839	Msa0038940:CDS	40.0%
!!	TAAGGAAGTTGTTTCTGCCA+AGG	-	chr1_1:68427844-68427863	Msa0038940:CDS	40.0%
!!	AAGGAAGTTGTTTCTGCCAA+GGG	-	chr1_1:68427845-68427864	Msa0038940:CDS	40.0%
!!	ACCTTCAGTTTGCTAAAAGC+AGG	+	chr1_1:68428272-68428291	None:intergenic	40.0%
	CATCATCAGACTGAAAAGCA+GGG	+	chr1_1:68428359-68428378	None:intergenic	40.0%
	TGATGCATTCCTGGAATTGA+AGG	-	chr1_1:68428374-68428393	Msa0038940:intron	40.0%
!	GCAAGAGTCCAGAATTTTCA+AGG	-	chr1_1:68428460-68428479	Msa0038940:intron	40.0%
	GTGAAATTGCAATCGAAAGC+TGG	+	chr1_1:68428504-68428523	None:intergenic	40.0%
!	ATATTGTGCCACTCTTGTGA+TGG	-	chr1_1:68428596-68428615	Msa0038940:intron	40.0%
!!	ATTTTGTGCCACTCTTGTGT+TGG	-	chr1_1:68428742-68428761	Msa0038940:intron	40.0%
	AATAGATGCCAACACAAGAG+TGG	+	chr1_1:68428753-68428772	None:intergenic	40.0%
!	TTCCACTGTTTGTTAATCGC+TGG	-	chr1_1:68426744-68426763	Msa0038940:three_prime_UTR	40.0%
	TTCCAGCGATTAACAAACAG+TGG	+	chr1_1:68426749-68426768	Msa0038930:intron	40.0%
	GGGTTTGTCTGCACTTTATT+AGG	-	chr1_1:68426826-68426845	Msa0038940:three_prime_UTR	40.0%
	TGAAGGAAAATCGAAACCCT+AGG	-	chr1_1:68426899-68426918	Msa0038940:three_prime_UTR	40.0%
!	CGAAACCCTAGGTTTTCATT+TGG	-	chr1_1:68426910-68426929	Msa0038940:three_prime_UTR	40.0%
	AAGCCCCAAATGAAAACCTA+GGG	+	chr1_1:68426918-68426937	Msa0038930:intron	40.0%
!	TTCATTTGGGGCTTCACAAT+TGG	-	chr1_1:68426924-68426943	Msa0038940:three_prime_UTR	40.0%
!	TCATTTGGGGCTTCACAATT+GGG	-	chr1_1:68426925-68426944	Msa0038940:three_prime_UTR	40.0%
!	GGCTTCACAATTGGGATTTT+GGG	-	chr1_1:68426933-68426952	Msa0038940:three_prime_UTR	40.0%
!	GCTTCACAATTGGGATTTTG+GGG	-	chr1_1:68426934-68426953	Msa0038940:three_prime_UTR	40.0%
!!!	GGATTTTGGGGTTTCTTTTG+TGG	-	chr1_1:68426946-68426965	Msa0038940:three_prime_UTR	40.0%
	ATCAATAGGCTTCACTGCAT+TGG	+	chr1_1:68427714-68427733	None:intergenic	40.0%
!	AACAATAGTGGGGTTGTTCT+TGG	+	chr1_1:68427813-68427832	None:intergenic	40.0%
	CCCCACTATTGTTCTACATA+AGG	-	chr1_1:68427820-68427839	Msa0038940:CDS	40.0%
!!	TAAGGAAGTTGTTTCTGCCA+AGG	-	chr1_1:68427844-68427863	Msa0038940:CDS	40.0%
!!	AAGGAAGTTGTTTCTGCCAA+GGG	-	chr1_1:68427845-68427864	Msa0038940:CDS	40.0%
!!	ACCTTCAGTTTGCTAAAAGC+AGG	+	chr1_1:68428272-68428291	None:intergenic	40.0%
	CATCATCAGACTGAAAAGCA+GGG	+	chr1_1:68428359-68428378	None:intergenic	40.0%
	TGATGCATTCCTGGAATTGA+AGG	-	chr1_1:68428374-68428393	Msa0038940:intron	40.0%
!	GCAAGAGTCCAGAATTTTCA+AGG	-	chr1_1:68428460-68428479	Msa0038940:intron	40.0%
	GTGAAATTGCAATCGAAAGC+TGG	+	chr1_1:68428504-68428523	None:intergenic	40.0%
!	ATATTGTGCCACTCTTGTGA+TGG	-	chr1_1:68428596-68428615	Msa0038940:intron	40.0%
!!	ATTTTGTGCCACTCTTGTGT+TGG	-	chr1_1:68428742-68428761	Msa0038940:intron	40.0%
	AATAGATGCCAACACAAGAG+TGG	+	chr1_1:68428753-68428772	None:intergenic	40.0%
	GAAGCCCCAAATGAAAACCT+AGG	+	chr1_1:68426919-68426938	Msa0038930:intron	45.0%
!	GGGCTTCACAATTGGGATTT+TGG	-	chr1_1:68426932-68426951	Msa0038940:three_prime_UTR	45.0%
!	GCTAGGCTGATTCTTAATGC+TGG	-	chr1_1:68427599-68427618	Msa0038940:CDS	45.0%
!	GGAAAGATGAAATCTAGGGC+TGG	-	chr1_1:68427662-68427681	Msa0038940:CDS	45.0%
!	AAGATGAAATCTAGGGCTGG+AGG	-	chr1_1:68427665-68427684	Msa0038940:CDS	45.0%
	GCATTGGATAGATCACCAAG+TGG	+	chr1_1:68427698-68427717	None:intergenic	45.0%
	GATGGAAAGAAGGCCTTCAA+TGG	-	chr1_1:68427740-68427759	Msa0038940:CDS	45.0%
	AGAAGTCAAATACTGGCAGC+AGG	-	chr1_1:68427912-68427931	Msa0038940:CDS	45.0%
	AAGACTGCTATACTTGGGGA+TGG	-	chr1_1:68428121-68428140	Msa0038940:intron	45.0%
!!	GCCTGCTTTTAGCAAACTGA+AGG	-	chr1_1:68428268-68428287	Msa0038940:intron	45.0%
	GCATCATCAGACTGAAAAGC+AGG	+	chr1_1:68428360-68428379	None:intergenic	45.0%
!	TCAGTCTGATGATGCATTCC+TGG	-	chr1_1:68428365-68428384	Msa0038940:intron	45.0%
	GAAGCCCCAAATGAAAACCT+AGG	+	chr1_1:68426919-68426938	Msa0038930:intron	45.0%
!	GGGCTTCACAATTGGGATTT+TGG	-	chr1_1:68426932-68426951	Msa0038940:three_prime_UTR	45.0%
!	GCTAGGCTGATTCTTAATGC+TGG	-	chr1_1:68427599-68427618	Msa0038940:CDS	45.0%
!	GGAAAGATGAAATCTAGGGC+TGG	-	chr1_1:68427662-68427681	Msa0038940:CDS	45.0%
!	AAGATGAAATCTAGGGCTGG+AGG	-	chr1_1:68427665-68427684	Msa0038940:CDS	45.0%
	GCATTGGATAGATCACCAAG+TGG	+	chr1_1:68427698-68427717	None:intergenic	45.0%
	GATGGAAAGAAGGCCTTCAA+TGG	-	chr1_1:68427740-68427759	Msa0038940:CDS	45.0%
	AGAAGTCAAATACTGGCAGC+AGG	-	chr1_1:68427912-68427931	Msa0038940:CDS	45.0%
	AAGACTGCTATACTTGGGGA+TGG	-	chr1_1:68428121-68428140	Msa0038940:intron	45.0%
!!	GCCTGCTTTTAGCAAACTGA+AGG	-	chr1_1:68428268-68428287	Msa0038940:intron	45.0%
	GCATCATCAGACTGAAAAGC+AGG	+	chr1_1:68428360-68428379	None:intergenic	45.0%
!	TCAGTCTGATGATGCATTCC+TGG	-	chr1_1:68428365-68428384	Msa0038940:intron	45.0%
!!!	TTCTTTATTTTATTTTATTT+TGG	-	chr1_1:68427115-68427134	Msa0038940:CDS	5.0%
!!!	TTCTTTATTTTATTTTATTT+TGG	-	chr1_1:68427115-68427134	Msa0038940:CDS	5.0%
!!	CAGTTCGTGCAGCCATTTTG+CGG	+	chr1_1:68427474-68427493	None:intergenic	50.0%
	CTTAATGCTGGTGCAGATGC+AGG	-	chr1_1:68427611-68427630	Msa0038940:CDS	50.0%
	GCTGGAGGAAGAAAACCACT+TGG	-	chr1_1:68427680-68427699	Msa0038940:CDS	50.0%
	CAGGCATCTCCTTCAATTCC+AGG	+	chr1_1:68428386-68428405	None:intergenic	50.0%
	GGCATATCAGGCAACTCTTC+AGG	+	chr1_1:68428405-68428424	None:intergenic	50.0%
	CCATGCTTAGCAGATGGAGA+CGG	+	chr1_1:68428426-68428445	None:intergenic	50.0%
	TGGACTCTTGCAGCATACTG+GGG	+	chr1_1:68428451-68428470	None:intergenic	50.0%
	CTGGACTCTTGCAGCATACT+GGG	+	chr1_1:68428452-68428471	None:intergenic	50.0%
	TCTGGACTCTTGCAGCATAC+TGG	+	chr1_1:68428453-68428472	None:intergenic	50.0%
!!	CAGTTCGTGCAGCCATTTTG+CGG	+	chr1_1:68427474-68427493	None:intergenic	50.0%
	CTTAATGCTGGTGCAGATGC+AGG	-	chr1_1:68427611-68427630	Msa0038940:CDS	50.0%
	GCTGGAGGAAGAAAACCACT+TGG	-	chr1_1:68427680-68427699	Msa0038940:CDS	50.0%
	CAGGCATCTCCTTCAATTCC+AGG	+	chr1_1:68428386-68428405	None:intergenic	50.0%
	GGCATATCAGGCAACTCTTC+AGG	+	chr1_1:68428405-68428424	None:intergenic	50.0%
	CCATGCTTAGCAGATGGAGA+CGG	+	chr1_1:68428426-68428445	None:intergenic	50.0%
	TGGACTCTTGCAGCATACTG+GGG	+	chr1_1:68428451-68428470	None:intergenic	50.0%
	CTGGACTCTTGCAGCATACT+GGG	+	chr1_1:68428452-68428471	None:intergenic	50.0%
	TCTGGACTCTTGCAGCATAC+TGG	+	chr1_1:68428453-68428472	None:intergenic	50.0%
	CTGATGCAATCGCCGAAGAG+CGG	-	chr1_1:68428032-68428051	Msa0038940:intron	55.0%
	GCAGATGGAGACGGCATATC+AGG	+	chr1_1:68428417-68428436	None:intergenic	55.0%
	CCGTCTCCATCTGCTAAGCA+TGG	-	chr1_1:68428423-68428442	Msa0038940:intron	55.0%
	GGGGAACCATGCTTAGCAGA+TGG	+	chr1_1:68428432-68428451	None:intergenic	55.0%
	CTGATGCAATCGCCGAAGAG+CGG	-	chr1_1:68428032-68428051	Msa0038940:intron	55.0%
	GCAGATGGAGACGGCATATC+AGG	+	chr1_1:68428417-68428436	None:intergenic	55.0%
	CCGTCTCCATCTGCTAAGCA+TGG	-	chr1_1:68428423-68428442	Msa0038940:intron	55.0%
	GGGGAACCATGCTTAGCAGA+TGG	+	chr1_1:68428432-68428451	None:intergenic	55.0%
	CGCTCTTCGGCGATTGCATC+AGG	+	chr1_1:68428034-68428053	None:intergenic	60.0%
	CGCTCTTCGGCGATTGCATC+AGG	+	chr1_1:68428034-68428053	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	68426585	68428997	68426585	ID=Msa0038940;Name=Msa0038940
chr1_1	mRNA	68426585	68428997	68426585	ID=Msa0038940-mRNA-1;Parent=Msa0038940;Name=Msa0038940-mRNA-1;_AED=0.03;_eAED=0.03;_QI=99\|1\|1\|1\|0.75\|0.6\|5\|440\|272
chr1_1	exon	68426585	68427213	68426585	ID=Msa0038940-mRNA-1:exon:22327;Parent=Msa0038940-mRNA-1
chr1_1	exon	68427293	68427348	68427293	ID=Msa0038940-mRNA-1:exon:22326;Parent=Msa0038940-mRNA-1
chr1_1	exon	68427440	68427955	68427440	ID=Msa0038940-mRNA-1:exon:22325;Parent=Msa0038940-mRNA-1
chr1_1	exon	68428047	68428139	68428047	ID=Msa0038940-mRNA-1:exon:22324;Parent=Msa0038940-mRNA-1
chr1_1	exon	68428934	68428997	68428934	ID=Msa0038940-mRNA-1:exon:22323;Parent=Msa0038940-mRNA-1
chr1_1	five_prime_UTR	68428934	68428997	68428934	ID=Msa0038940-mRNA-1:five_prime_utr;Parent=Msa0038940-mRNA-1
chr1_1	five_prime_UTR	68428105	68428139	68428105	ID=Msa0038940-mRNA-1:five_prime_utr;Parent=Msa0038940-mRNA-1
chr1_1	CDS	68428047	68428104	68428047	ID=Msa0038940-mRNA-1:cds;Parent=Msa0038940-mRNA-1
chr1_1	CDS	68427440	68427955	68427440	ID=Msa0038940-mRNA-1:cds;Parent=Msa0038940-mRNA-1
chr1_1	CDS	68427293	68427348	68427293	ID=Msa0038940-mRNA-1:cds;Parent=Msa0038940-mRNA-1
chr1_1	CDS	68427025	68427213	68427025	ID=Msa0038940-mRNA-1:cds;Parent=Msa0038940-mRNA-1
chr1_1	three_prime_UTR	68426585	68427024	68426585	ID=Msa0038940-mRNA-1:three_prime_utr;Parent=Msa0038940-mRNA-1

Gene Sequence

>Msa0038940

ATGGCTGCACGAACTGTTCGTTTGTTTCAAGACCAAAATGCCATTGATCATGTTAATGATGCAGGAACTATGTCTATAAAGACAGATTTTGCAGGAAAGATGAAATCTAGGGCTGGAGGAAGAAAACCACTTGGTGATCTATCCAATGCAGTGAAGCCTATTGATATAGTAGATGGAAAGAAGGCCTTCAATGGTAGCACAATTAAACCCTCTGTCAATCAAACACCAAATCTACTCAAGTCCAAGAACAACCCCACTATTGTTCTACATAAGGATAAGGAAGTTGTTTCTGCCAAGGGAAAAAATCTTGAAATCAACAAAAGAACTGGCAGCAAAGCTTCTAAGAAGTCAAATACTGGCAGCAGGAGAGCACTTACTGATATCTCAAACTCGCTGCATGTACCTGATATGAAAAATAAGGACAGCCTGGACACTAGTTCTTTTAAAGGGAAATATCTTCATCCTGATGCAATCGCCGAAGAGCGGATGTTTCATAATCATGAAGAATGTATAAAATCACAAAGTCATGCATTGGATATGCATCATTTTTTCAAGACTGCTATACTTGGGGATGATTTGGATGATGACATGAAAATTTCATTTGAACAGCCTGCTTTTAGCAAACTGAAGTCTGATGATGCATTCCTGGAATTGAAGGAGATGCCTGAAGAGTTGCCTGATATGCCGTCTCCATCTGCTAAGCATGGTTCCCCAGTATGCTGCAAGAGTCCAGAATTTTCAAGGATTTCAATGTGGGATGACCCAGCTTTCGATTGCAATTTCACTTTGATAGAATCACCCAAATCGTCTAAAAACTGA

Protein sequence

>Msa0038940

MAARTVRLFQDQNAIDHVNDAGTMSIKTDFAGKMKSRAGGRKPLGDLSNAVKPIDIVDGKKAFNGSTIKPSVNQTPNLLKSKNNPTIVLHKDKEVVSAKGKNLEINKRTGSKASKKSNTGSRRALTDISNSLHVPDMKNKDSLDTSSFKGKYLHPDAIAEERMFHNHEECIKSQSHALDMHHFFKTAILGDDLDDDMKISFEQPAFSKLKSDDAFLELKEMPEELPDMPSPSAKHGSPVCCKSPEFSRISMWDDPAFDCNFTLIESPKSSKN*