AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0786500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0786500 MtrunA17_Chr5g0442971 56.454 767 209 15 19 714 16 728 0.0 744
Msa0786500 MtrunA17_Chr5g0443151 57.066 559 175 7 245 741 18 573 0.0 572
Msa0786500 MtrunA17_Chr5g0443194 55.309 405 165 7 40 431 15 416 2.15e-131 398
Msa0786500 MtrunA17_Chr5g0443181 47.794 408 148 7 84 480 1 354 7.93e-109 335
Msa0786500 MtrunA17_Chr5g0443141 53.314 347 128 4 397 741 2 316 2.11e-92 291
Msa0786500 MtrunA17_Chr5g0439971 61.151 278 99 4 165 435 534 809 2.09e-85 292
Msa0786500 MtrunA17_Chr5g0439971 51.613 186 81 5 28 208 41 222 2.15e-45 175
Msa0786500 MtrunA17_Chr5g0443161 61.905 231 83 3 21 246 8 238 8.85e-84 266
Msa0786500 MtrunA17_Chr3g0119031 55.593 295 121 5 165 451 529 821 1.35e-80 279
Msa0786500 MtrunA17_Chr3g0119031 49.468 188 84 5 28 208 34 217 7.29e-43 167
Msa0786500 MtrunA17_Chr1g0170261 53.737 281 116 6 165 435 531 807 4.73e-72 254
Msa0786500 MtrunA17_Chr1g0170261 45.270 148 72 4 29 169 38 183 1.01e-31 132
Msa0786500 MtrunA17_Chr4g0043811 58.915 129 34 2 483 610 39 149 3.16e-35 130
Msa0786500 MtrunA17_Chr1g0166871 28.082 146 103 2 44 187 13 158 2.57e-19 89.7
Msa0786500 MtrunA17_Chr1g0176331 33.858 127 82 2 44 170 10 134 4.36e-17 83.6
Msa0786500 MtrunA17_Chr7g0268251 32.000 125 78 4 44 163 13 135 3.42e-14 75.1
Msa0786500 MtrunA17_Chr3g0137501 32.000 125 75 3 46 163 70 191 2.11e-13 74.3
Msa0786500 MtrunA17_Chr3g0137501 28.462 130 82 3 44 162 406 535 3.77e-11 67.0
Msa0786500 MtrunA17_Chr1g0168221 33.594 128 79 4 44 169 65 188 8.86e-13 72.4
Msa0786500 MtrunA17_Chr1g0186411 33.636 110 71 2 44 152 62 170 8.92e-13 72.4
Msa0786500 MtrunA17_Chr1g0186421 31.250 128 84 4 44 169 49 174 1.46e-12 70.1
Msa0786500 MtrunA17_Chr5g0441861 71.429 42 12 0 390 431 2 43 1.95e-12 63.2
Msa0786500 MtrunA17_Chr4g0069161 33.582 134 85 4 39 169 171 303 1.02e-11 66.6
Msa0786500 MtrunA17_Chr8g0338771 30.303 165 94 7 41 189 8 167 8.74e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0786500 AT5G06600.3 50.847 295 134 6 165 452 530 820 2.29e-73 257
Msa0786500 AT5G06600.3 42.553 188 96 5 29 208 34 217 6.39e-36 146
Msa0786500 AT5G06600.2 50.847 295 134 6 165 452 529 819 5.72e-73 258
Msa0786500 AT5G06600.2 42.553 188 96 5 29 208 33 216 6.11e-36 146
Msa0786500 AT5G06600.1 50.847 295 134 6 165 452 530 820 5.87e-73 258
Msa0786500 AT5G06600.1 42.553 188 96 5 29 208 34 217 6.22e-36 146
Msa0786500 AT3G11910.3 50.000 278 129 5 165 435 528 802 1.23e-70 251
Msa0786500 AT3G11910.3 38.144 194 115 4 16 208 27 216 2.29e-34 141
Msa0786500 AT3G11910.1 50.000 278 129 5 165 435 528 802 1.23e-70 251
Msa0786500 AT3G11910.1 38.144 194 115 4 16 208 27 216 2.29e-34 141
Msa0786500 AT3G11910.4 50.000 278 129 5 165 435 527 801 1.31e-70 251
Msa0786500 AT3G11910.4 38.144 194 115 4 16 208 26 215 2.46e-34 141
Msa0786500 AT3G11910.2 50.000 278 129 5 165 435 527 801 1.31e-70 251
Msa0786500 AT3G11910.2 38.144 194 115 4 16 208 26 215 2.46e-34 141
Msa0786500 AT3G58250.1 40.769 130 75 2 44 171 10 139 3.50e-21 95.5
Msa0786500 AT3G58260.1 38.168 131 77 1 45 171 9 139 7.43e-21 94.7
Msa0786500 AT3G58220.1 35.714 168 97 6 44 202 12 177 1.71e-20 94.4
Msa0786500 AT3G58220.2 35.714 168 97 6 44 202 12 177 1.93e-20 95.5
Msa0786500 AT3G58270.3 41.085 129 74 2 44 171 8 135 2.51e-20 93.6
Msa0786500 AT3G58270.2 41.085 129 74 2 44 171 8 135 2.51e-20 93.6
Msa0786500 AT3G58270.1 41.085 129 74 2 44 171 8 135 2.51e-20 93.6
Msa0786500 AT3G58210.1 38.849 139 78 3 44 180 8 141 3.08e-20 93.2
Msa0786500 AT3G58220.3 38.889 126 72 4 44 165 12 136 3.13e-20 91.7
Msa0786500 AT3G58220.4 38.889 126 72 4 44 165 12 136 3.97e-20 93.2
Msa0786500 AT3G58220.5 38.889 126 72 4 44 165 12 136 4.02e-20 92.4
Msa0786500 AT2G01790.1 37.956 137 77 3 47 180 11 142 2.34e-19 89.4
Msa0786500 AT2G05410.2 39.130 138 78 4 36 171 3 136 2.49e-19 89.7
Msa0786500 AT3G27040.1 36.567 134 79 2 44 176 9 137 4.12e-19 88.6
Msa0786500 AT3G58370.1 40.945 127 70 3 44 165 9 135 5.63e-19 89.0
Msa0786500 AT3G58350.2 37.500 128 77 2 47 171 11 138 6.00e-18 85.9
Msa0786500 AT3G58350.1 37.500 128 77 2 47 171 11 138 6.00e-18 85.9
Msa0786500 AT3G58340.2 37.190 121 74 2 44 163 8 127 1.59e-17 84.7
Msa0786500 AT3G58410.2 37.405 131 72 4 44 173 8 129 1.61e-17 84.7
Msa0786500 AT3G58340.1 37.190 121 74 2 44 163 8 127 1.75e-17 84.7
Msa0786500 AT3G58200.1 34.483 116 75 1 44 158 8 123 1.94e-17 84.7
Msa0786500 AT3G58440.1 36.641 131 76 3 44 174 10 133 2.01e-16 84.0
Msa0786500 AT3G58290.1 34.559 136 79 3 38 163 5 140 5.02e-16 79.7
Msa0786500 AT3G58360.1 39.259 135 75 3 47 180 11 139 5.70e-16 79.7
Msa0786500 AT3G44800.1 33.333 138 86 2 44 180 5 137 5.78e-16 80.5
Msa0786500 AT2G05420.1 36.620 142 77 5 47 176 12 152 4.02e-15 77.4
Msa0786500 AT1G31390.1 39.130 115 67 2 47 158 11 125 4.20e-15 76.6
Msa0786500 AT3G58400.1 40.708 113 60 3 65 176 24 130 6.78e-15 76.6
Msa0786500 AT3G58410.1 35.878 131 60 4 44 173 29 136 1.42e-14 76.3
Msa0786500 AT3G44790.1 34.228 149 86 5 44 184 5 149 4.21e-14 74.7
Msa0786500 AT5G43560.2 37.600 125 70 5 47 169 73 191 8.39e-14 75.9
Msa0786500 AT5G43560.1 37.600 125 70 5 47 169 73 191 8.39e-14 75.9
Msa0786500 AT3G58240.1 32.667 150 99 2 39 187 3 151 2.21e-13 72.4
Msa0786500 AT2G25320.1 30.952 126 76 4 46 163 74 196 5.01e-13 73.6
Msa0786500 AT2G25320.1 27.132 129 84 2 44 162 404 532 5.47e-11 67.0
Msa0786500 AT2G25320.3 30.952 126 76 4 46 163 75 197 5.19e-13 73.6
Msa0786500 AT2G25320.3 27.132 129 84 2 44 162 405 533 5.56e-11 67.0
Msa0786500 AT2G25320.2 30.952 126 76 4 46 163 75 197 7.86e-13 72.8
Msa0786500 AT1G04300.1 34.234 111 69 3 44 152 69 177 1.10e-11 68.9
Msa0786500 AT5G52330.4 32.710 107 70 2 47 152 23 128 1.25e-11 67.8
Msa0786500 AT5G52330.3 32.710 107 70 2 47 152 23 128 1.25e-11 67.8
Msa0786500 AT5G52330.1 32.710 107 70 2 47 152 23 128 1.25e-11 67.8
Msa0786500 AT2G25330.1 30.159 126 77 4 46 163 49 171 2.67e-11 67.4
Msa0786500 AT1G04300.3 32.203 118 70 3 44 152 69 185 5.38e-11 67.0

Find 162 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATCACGTCCTCTTTAA+AGG 0.153438 5_2:+72027103 None:intergenic
TCCACAGTGTTGGCAGTTTC+AGG 0.182689 5_2:+72033235 None:intergenic
ATCTGTGACGGAAGTCTTTA+AGG 0.203508 5_2:+72026839 None:intergenic
ATCTTGAATCTCAGCAATTT+TGG 0.207291 5_2:+72026737 None:intergenic
GGGCTATTTGTCCTTGTATT+TGG 0.227095 5_2:-72032938 Msa0786500:CDS
ATCTTTAATAGTCATCTTCT+TGG 0.246146 5_2:+72030947 None:intergenic
CAACACCGACTTGTTCTAAT+TGG 0.246269 5_2:+72026994 None:intergenic
ATGAATGAAGGTACCTTCTT+TGG 0.255107 5_2:+72033694 None:intergenic
CTCCACTGATTCTTCATCCT+TGG 0.262128 5_2:+72027436 None:intergenic
GAAAATGAAAGTAGAATTTC+GGG 0.263886 5_2:-72033411 Msa0786500:CDS
TCCAATTCAGTTTGAGCCTT+TGG 0.282013 5_2:+72026612 None:intergenic
CGAAAATGAAAGTAGAATTT+CGG 0.293627 5_2:-72033412 Msa0786500:CDS
TACTTAGTCCTTCTTTGAAT+TGG 0.295233 5_2:+72031714 None:intergenic
CCCATCACAACGGCCCCTTT+TGG 0.305317 5_2:+72032958 None:intergenic
AGCAAATACATAAATCAAAA+TGG 0.312364 5_2:+72026549 None:intergenic
GAATTGTATGATCATTATAA+AGG 0.322594 5_2:-72031659 Msa0786500:CDS
CTCAAATATCACAGCCTAGA+TGG 0.329099 5_2:-72033448 Msa0786500:intron
ATTCAGATGTATTTGAAGTT+GGG 0.347725 5_2:-72033147 Msa0786500:CDS
GATCCCAGCGCTTGTGGTAT+TGG 0.349017 5_2:-72029552 Msa0786500:CDS
AAAATGCTTGCTAAAGAGTT+TGG 0.349882 5_2:-72029586 Msa0786500:CDS
CTCTTCTTGAGTAGTGGAAT+GGG 0.349955 5_2:+72028578 None:intergenic
TCCAAAGGCTCAAACTGAAT+TGG 0.358844 5_2:-72026613 Msa0786500:CDS
CCATGAATGCAGTTAGAAAA+TGG 0.362772 5_2:-72027714 Msa0786500:intron
AACAACATTGTGAGGATGCT+TGG 0.373950 5_2:-72026957 Msa0786500:CDS
CCTCTCGGAGCAACTTCTTC+AGG 0.378616 5_2:-72027141 Msa0786500:CDS
TGAAAACTCCTCACTTTGTC+AGG 0.379245 5_2:+72030975 None:intergenic
ATGCTCTGCAATGTCTTTCT+CGG 0.379671 5_2:+72031589 None:intergenic
GAGGGTTTCATTGGCCTACT+AGG 0.383208 5_2:+72029502 None:intergenic
CTTCGCCGTTTCAATTCAAA+TGG 0.383390 5_2:-72033210 Msa0786500:CDS
TACCAAATAGGAGTAAAATT+AGG 0.385479 5_2:+72026468 None:intergenic
GCTTCAAAAGAGGGTTTCAT+TGG 0.387471 5_2:+72029493 None:intergenic
GATGACTATTAAAGATTTCA+AGG 0.389171 5_2:-72030940 Msa0786500:intron
TCCTTGGATTCTTTGTCTGA+TGG 0.392224 5_2:+72027452 None:intergenic
TATTCAGATGTATTTGAAGT+TGG 0.397400 5_2:-72033148 Msa0786500:CDS
CCAAGGACAAGTTTCGAAAC+TGG 0.399880 5_2:-72027171 Msa0786500:CDS
CAAAGAAGGACTAAGTAGTT+GGG 0.401227 5_2:-72031708 Msa0786500:CDS
AACAGCAACGCCTACCAAAT+AGG 0.401629 5_2:+72026456 None:intergenic
ACTATCGTCATGCTAATTTG+TGG 0.408717 5_2:+72032874 None:intergenic
CACTCCTGAAGTTAAGTTCA+AGG 0.414921 5_2:-72027063 Msa0786500:CDS
AATTGTATGATCATTATAAA+GGG 0.416343 5_2:-72031658 Msa0786500:CDS
GCTACCTCCTCCTCCCATCT+AGG 0.417040 5_2:+72033434 None:intergenic
CTTGTCCTTGGACAGAATGC+TGG 0.421534 5_2:+72027183 None:intergenic
CCAGTTTCGAAACTTGTCCT+TGG 0.422010 5_2:+72027171 None:intergenic
ACATGCTCACAAATAACATT+TGG 0.424960 5_2:+72027835 None:intergenic
ATTTGAATATTATGAATACT+TGG 0.426319 5_2:-72026516 Msa0786500:three_prime_UTR
GACAATTTGTAAACTTTCCA+AGG 0.434498 5_2:-72028754 Msa0786500:CDS
TCAAGATAATGAAGCATTGA+AGG 0.435892 5_2:-72026883 Msa0786500:CDS
TCTTTGTCTGATGGAGATAG+AGG 0.436738 5_2:+72027461 None:intergenic
TCAAAGAAGGACTAAGTAGT+TGG 0.439642 5_2:-72031709 Msa0786500:CDS
GAAGCTCTATCGAGTCTTCA+AGG 0.440130 5_2:-72026580 Msa0786500:CDS
TCTAAGTATGAAGGCACATC+AGG 0.441956 5_2:+72027633 None:intergenic
TCCAAAAGGGGCCGTTGTGA+TGG 0.448334 5_2:-72032959 Msa0786500:CDS
AGACATTGCAGAGCATTTAA+CGG 0.453190 5_2:-72031582 Msa0786500:intron
CAATGCTTCATTATCTTGAT+CGG 0.454327 5_2:+72026887 None:intergenic
ATTGTCCATTTGAATTGAAA+CGG 0.458446 5_2:+72033205 None:intergenic
TATTATGCGTATTTGTGTGC+AGG 0.459102 5_2:-72027872 Msa0786500:CDS
TCACCTCTACAGTATCATAA+AGG 0.465662 5_2:-72031174 Msa0786500:intron
CGTGTACTAACTTATCCAAA+AGG 0.469553 5_2:-72032973 Msa0786500:CDS
GCCTACTAGGACGATATGTA+TGG 0.476770 5_2:+72029515 None:intergenic
TCTCTTCTTGAGTAGTGGAA+TGG 0.477728 5_2:+72028577 None:intergenic
ACAACATTGTGAGGATGCTT+GGG 0.483719 5_2:-72026956 Msa0786500:CDS
TGGATTAACACTCCAACCGT+TGG 0.484317 5_2:+72032894 None:intergenic
GGATTAACACTCCAACCGTT+GGG 0.484770 5_2:+72032895 None:intergenic
AGAAGTTGCTCCGAGAGGTT+GGG 0.485470 5_2:+72027146 None:intergenic
CTTTGGACTGCTGCTGTGTG+TGG 0.488793 5_2:+72033711 None:intergenic
AAGAAGTTGCTCCGAGAGGT+TGG 0.491831 5_2:+72027145 None:intergenic
CCCTTTCATTGCAGTTATGT+TGG 0.494112 5_2:-72028422 Msa0786500:intron
ACCATACATATCGTCCTAGT+AGG 0.494117 5_2:-72029516 Msa0786500:CDS
GAAGAGATTGAAGAGAGAAC+AGG 0.497870 5_2:-72031234 Msa0786500:CDS
TTCAGATGTATTTGAAGTTG+GGG 0.498270 5_2:-72033146 Msa0786500:CDS
ACTGCCTTGAACTTAACTTC+AGG 0.499717 5_2:+72027059 None:intergenic
TTTGGAAGTGGAGCGTGGGC+GGG 0.501458 5_2:-72028705 Msa0786500:intron
TCAAATATCACAGCCTAGAT+GGG 0.501649 5_2:-72033447 Msa0786500:intron
TACTCCAATACCACAAGCGC+TGG 0.507089 5_2:+72029548 None:intergenic
CCAAAAGGGGCCGTTGTGAT+GGG 0.509312 5_2:-72032958 Msa0786500:CDS
AGAATATGTGCACAGTGGCC+AGG 0.511624 5_2:-72027613 Msa0786500:intron
TTGGAAGCCTCATTGTGAAC+TGG 0.511660 5_2:-72028403 Msa0786500:CDS
CAGCTCGATCCCAGCGCTTG+TGG 0.512727 5_2:-72029558 Msa0786500:CDS
GTGTACTAACTTATCCAAAA+GGG 0.516847 5_2:-72032972 Msa0786500:CDS
TCCTCACAATGTTGTTGAGA+AGG 0.519498 5_2:+72026964 None:intergenic
TTCCACTACTCAAGAAGAGA+TGG 0.519896 5_2:-72028574 Msa0786500:CDS
CCCCATCTCTTCTTGAGTAG+TGG 0.520996 5_2:+72028572 None:intergenic
CTTTCAGAAAGTTTCTGCAA+TGG 0.522053 5_2:-72027679 Msa0786500:CDS
TTGTCCTTGGACAGAATGCT+GGG 0.522537 5_2:+72027184 None:intergenic
AAAAGTAGTCAGTGTAGACT+TGG 0.523638 5_2:-72027291 Msa0786500:CDS
GACTGCTGCTGTGTGTGGAT+CGG 0.525059 5_2:+72033716 None:intergenic
CAATTCACCTTGAGATATGA+AGG 0.525316 5_2:+72031676 None:intergenic
GAAAGTAGAATTTCGGGGAT+AGG 0.529525 5_2:-72033405 Msa0786500:CDS
GAAGACCTTGCAGAACAGAT+TGG 0.529742 5_2:-72031026 Msa0786500:CDS
TGAATCTAGTTCCAAATACA+AGG 0.531193 5_2:+72032927 None:intergenic
CAACAAGTTTGCCCAACGGT+TGG 0.531595 5_2:-72032906 Msa0786500:CDS
AACCTTGCTAAGATTTCTGA+TGG 0.532238 5_2:+72028368 None:intergenic
ACAGCCTAGATGGGAGGAGG+AGG 0.532969 5_2:-72033438 Msa0786500:intron
TTTGCGTCCTTCATATCTCA+AGG 0.535613 5_2:-72031683 Msa0786500:CDS
CATTCCTCCAGTTCACAATG+AGG 0.537900 5_2:+72028396 None:intergenic
TGCACATATTCTAAGTATGA+AGG 0.544373 5_2:+72027624 None:intergenic
AAATCCCAGCATTCTGTCCA+AGG 0.547345 5_2:-72027188 Msa0786500:CDS
CTTTCCAAGGGGTGGCCTAG+TGG 0.547506 5_2:-72028741 Msa0786500:CDS
ACAATTTGTAAACTTTCCAA+GGG 0.550611 5_2:-72028753 Msa0786500:CDS
TGAAGCTCAACAGTCAAAAG+AGG 0.550892 5_2:-72027363 Msa0786500:CDS
AAAGAAGGACTAAGTAGTTG+GGG 0.551683 5_2:-72031707 Msa0786500:CDS
ATGTGCTGCTGCTTCAAAAG+AGG 0.552241 5_2:+72029483 None:intergenic
ACCTTGCAGAACAGATTGGA+AGG 0.552440 5_2:-72031022 Msa0786500:CDS
TTTGATCATCAGCGAGTCGA+TGG 0.552856 5_2:+72026664 None:intergenic
ATGCAGCTCCAATTCAAAGA+AGG 0.552858 5_2:-72031722 Msa0786500:CDS
TGTGCTGCTGCTTCAAAAGA+GGG 0.554196 5_2:+72029484 None:intergenic
TTTGTAAACTTTCCAAGGGG+TGG 0.558885 5_2:-72028749 Msa0786500:CDS
AATTCCACTAGGCCACCCCT+TGG 0.561693 5_2:+72028737 None:intergenic
TCCACTACTCAAGAAGAGAT+GGG 0.565117 5_2:-72028573 Msa0786500:CDS
ACCTTCTCAACAACATTGTG+AGG 0.565464 5_2:-72026965 Msa0786500:CDS
CACAAGCGCTGGGATCGAGC+TGG 0.568401 5_2:+72029559 None:intergenic
AATAAGAACTCAGTAAGAAG+AGG 0.568583 5_2:-72032838 Msa0786500:intron
TCCATCAGACAAAGAATCCA+AGG 0.568868 5_2:-72027453 Msa0786500:CDS
ACACAGCAGCAGTCCAAAGA+AGG 0.571241 5_2:-72033707 Msa0786500:intron
CTGTGTTTGTTGATCTGTGA+CGG 0.571968 5_2:+72026827 None:intergenic
GAGACCACTTATGATGATGA+AGG 0.572219 5_2:-72027335 Msa0786500:CDS
ATCCAAGGATGAAGAATCAG+TGG 0.576691 5_2:-72027438 Msa0786500:CDS
ATCACAGCCTAGATGGGAGG+AGG 0.579747 5_2:-72033441 Msa0786500:intron
GAGGGATATCACCTTTAAAG+AGG 0.580479 5_2:-72027114 Msa0786500:CDS
GGTGCCTTCATCATCATAAG+TGG 0.581753 5_2:+72027331 None:intergenic
CCCTTCCAATCTGTTCTGCA+AGG 0.582966 5_2:+72031021 None:intergenic
CTTATGATGATGAAGGCACC+TGG 0.589307 5_2:-72027328 Msa0786500:CDS
TGCTGCTGTGTGTGGATCGG+CGG 0.590302 5_2:+72033719 None:intergenic
CATTTGAATTGAAACGGCGA+AGG 0.594367 5_2:+72033211 None:intergenic
CGGCGAAGGATCCACAGTGT+TGG 0.595048 5_2:+72033225 None:intergenic
AGCAACTTCTTCAGGAACTG+AGG 0.598392 5_2:-72027133 Msa0786500:CDS
GAAACTGGATCCCAACCTCT+CGG 0.598734 5_2:-72027156 Msa0786500:CDS
AGCGCTTGTGGTATTGGAGT+AGG 0.598872 5_2:-72029546 Msa0786500:CDS
ACTCCAATACCACAAGCGCT+GGG 0.599744 5_2:+72029549 None:intergenic
AATACATAAATCAAAATGGA+GGG 0.601241 5_2:+72026553 None:intergenic
TGTGTGTGGATCGGCGGCGA+CGG 0.603192 5_2:+72033725 None:intergenic
ATGAAGGCACATCAGGATGT+CGG 0.607045 5_2:+72027640 None:intergenic
TTGTAGACCCTGACAAAGTG+AGG 0.613477 5_2:-72030983 Msa0786500:CDS
GCAACTTCTTCAGGAACTGA+GGG 0.613995 5_2:-72027132 Msa0786500:CDS
GTTAACATTTGAAGAAAACA+AGG 0.626165 5_2:-72027803 Msa0786500:intron
AAATACATAAATCAAAATGG+AGG 0.626859 5_2:+72026552 None:intergenic
GACTTGTTCTAATTGGTGAG+AGG 0.630409 5_2:+72027001 None:intergenic
GAAAACTCCTCACTTTGTCA+GGG 0.633216 5_2:+72030976 None:intergenic
TCAGATGTATTTGAAGTTGG+GGG 0.638171 5_2:-72033145 Msa0786500:CDS
TGTTGAAGATCAAATTCCAA+AGG 0.638703 5_2:-72026628 Msa0786500:CDS
GAAGCCTCATTGTGAACTGG+AGG 0.639398 5_2:-72028400 Msa0786500:CDS
GATTCAACAAGTTTGCCCAA+CGG 0.644999 5_2:-72032910 Msa0786500:CDS
AGCCATCAGAAATCTTAGCA+AGG 0.646289 5_2:-72028370 Msa0786500:intron
TCTTCTTGAGTAGTGGAATG+GGG 0.649036 5_2:+72028579 None:intergenic
GCGAGTAGAGCTGTAGAGAG+AGG 0.651306 5_2:-72033753 Msa0786500:five_prime_UTR
TTGGTGAGAGGAAAACGCGC+TGG 0.658794 5_2:+72027013 None:intergenic
TGTACTAACTTATCCAAAAG+GGG 0.660438 5_2:-72032971 Msa0786500:CDS
AGACCTTTATGATACTGTAG+AGG 0.661673 5_2:+72031171 None:intergenic
CCTGAAGAAGTTGCTCCGAG+AGG 0.667819 5_2:+72027141 None:intergenic
CAAGGATGAAGAATCAGTGG+AGG 0.673024 5_2:-72027435 Msa0786500:CDS
CCTTGCAGAACAGATTGGAA+GGG 0.676124 5_2:-72031021 Msa0786500:CDS
CCACTACTCAAGAAGAGATG+GGG 0.676676 5_2:-72028572 Msa0786500:CDS
AATATCACAGCCTAGATGGG+AGG 0.678489 5_2:-72033444 Msa0786500:intron
ACCTGAAACTGCCAACACTG+TGG 0.681026 5_2:-72033236 Msa0786500:CDS
CAATTTGTAAACTTTCCAAG+GGG 0.681164 5_2:-72028752 Msa0786500:CDS
AAAACAATACTAATTCCACT+AGG 0.684563 5_2:+72028726 None:intergenic
GGACAAATAGCCCATCACAA+CGG 0.688032 5_2:+72032948 None:intergenic
TCTCACCAATTAGAACAAGT+CGG 0.697541 5_2:-72026999 Msa0786500:CDS
TGAATGCAGTTAGAAAATGG+TGG 0.711237 5_2:-72027711 Msa0786500:intron
TACTTAGAATATGTGCACAG+TGG 0.754135 5_2:-72027618 Msa0786500:CDS
AGTTGAAGTAACTTGCAGTG+TGG 0.768866 5_2:-72031612 Msa0786500:CDS
AAAATGAAAGTAGAATTTCG+GGG 0.772340 5_2:-72033410 Msa0786500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAATTGTTTTTATTTTC+TGG + chr5_2:72026629-72026648 None:intergenic 10.0%
!!! TACTTTTCTTTTTTAAATTA+AGG - chr5_2:72027519-72027538 Msa0786500:intron 10.0%
!!! GTTTTTCTTTTCTTATATAA+CGG + chr5_2:72026819-72026838 None:intergenic 15.0%
!! TAATTATAAACATGGATATT+GGG + chr5_2:72026876-72026895 None:intergenic 15.0%
!! ATAATTATAAACATGGATAT+TGG + chr5_2:72026877-72026896 None:intergenic 15.0%
!! AAACTATTTGAATAAAAGAA+TGG + chr5_2:72027892-72027911 None:intergenic 15.0%
!! AATTGTATGATCATTATAAA+GGG - chr5_2:72028539-72028558 Msa0786500:CDS 15.0%
!!! GATAACATATAATACTTTTT+AGG - chr5_2:72029137-72029156 Msa0786500:intron 15.0%
!! AACATTTCTTATAATAACAT+TGG + chr5_2:72030020-72030039 None:intergenic 15.0%
!! ATGTTATTATAAGAAATGTT+TGG - chr5_2:72030020-72030039 Msa0786500:intron 15.0%
!!! GAAAATAATAATTTGCATAT+TGG + chr5_2:72030376-72030395 None:intergenic 15.0%
!! TCAAAATAAAACATAAATGA+GGG + chr5_2:72030905-72030924 None:intergenic 15.0%
!! TTCAAAATAAAACATAAATG+AGG + chr5_2:72030906-72030925 None:intergenic 15.0%
!!! ATCTTTATTTTCACTAAAAA+TGG - chr5_2:72031187-72031206 Msa0786500:CDS 15.0%
!! GACAAATTACATTATTATTT+AGG - chr5_2:72031588-72031607 Msa0786500:CDS 15.0%
!! TATGAAAAGGATAAAAATAT+TGG + chr5_2:72032677-72032696 None:intergenic 15.0%
!! ATTTGAATATTATGAATACT+TGG - chr5_2:72033681-72033700 Msa0786500:intron 15.0%
!! AAAAGAAAAACAACAAATTC+AGG - chr5_2:72026828-72026847 Msa0786500:CDS 20.0%
!! TTCATATTATAACAACTGTA+AGG + chr5_2:72027403-72027422 None:intergenic 20.0%
!!! TGAAAATTTATGAGTTTTCA+AGG + chr5_2:72028308-72028327 None:intergenic 20.0%
!! GTTTAATGTTAAATGCTAAA+GGG + chr5_2:72028371-72028390 None:intergenic 20.0%
!! TGTTTAATGTTAAATGCTAA+AGG + chr5_2:72028372-72028391 None:intergenic 20.0%
!! AACATTAAACAAAATGAAAG+AGG - chr5_2:72028381-72028400 Msa0786500:CDS 20.0%
!! GAATTGTATGATCATTATAA+AGG - chr5_2:72028538-72028557 Msa0786500:CDS 20.0%
!!! GATTAAAAAGTTATTGGTTT+AGG + chr5_2:72028798-72028817 None:intergenic 20.0%
!! GAAACAGATTAAAAAGTTAT+TGG + chr5_2:72028804-72028823 None:intergenic 20.0%
!!! TTCTATTGTACTATTTCTAT+TGG - chr5_2:72028894-72028913 Msa0786500:intron 20.0%
!!! CTATTTCTATTGGTTTATAT+TGG - chr5_2:72028904-72028923 Msa0786500:intron 20.0%
!! ACAAACAATACAAATTTCTA+GGG + chr5_2:72029065-72029084 None:intergenic 20.0%
!! TTTCTTGATTATGATTTATG+AGG + chr5_2:72029388-72029407 None:intergenic 20.0%
!! GTTCATTCATGATAATTAAT+AGG + chr5_2:72029985-72030004 None:intergenic 20.0%
!! AAATGCACTTATTGAAAATT+AGG + chr5_2:72030302-72030321 None:intergenic 20.0%
!!! AATTTTCAATAAGTGCATTT+TGG - chr5_2:72030302-72030321 Msa0786500:intron 20.0%
!! TTAAAAAATTGTTCTCTATG+AGG + chr5_2:72030406-72030425 None:intergenic 20.0%
!! AAAAAGTCATAAAATAACAG+GGG + chr5_2:72030790-72030809 None:intergenic 20.0%
!! GAAAAAGTCATAAAATAACA+GGG + chr5_2:72030791-72030810 None:intergenic 20.0%
!! TGAAAAAGTCATAAAATAAC+AGG + chr5_2:72030792-72030811 None:intergenic 20.0%
!! AAAATAAAACATAAATGAGG+GGG + chr5_2:72030903-72030922 None:intergenic 20.0%
!! CAAAATAAAACATAAATGAG+GGG + chr5_2:72030904-72030923 None:intergenic 20.0%
!!! ATGTCATTTTCTCAAATTAT+CGG - chr5_2:72031092-72031111 Msa0786500:intron 20.0%
!! AAAGATAAACAAAGTTAACA+TGG + chr5_2:72031173-72031192 None:intergenic 20.0%
!!! TGGTTTTAGTATGATTATTT+TGG - chr5_2:72031281-72031300 Msa0786500:intron 20.0%
!!! GGTTTTAGTATGATTATTTT+GGG - chr5_2:72031282-72031301 Msa0786500:intron 20.0%
!!! TGTTTGATTTTAACATATGT+TGG - chr5_2:72031715-72031734 Msa0786500:CDS 20.0%
!!! GTTTGATTTTAACATATGTT+GGG - chr5_2:72031716-72031735 Msa0786500:CDS 20.0%
!! TGAAGAGATTAAACTTTATA+AGG - chr5_2:72031879-72031898 Msa0786500:intron 20.0%
!! TTAGTTGTCTGATTTATTAT+TGG - chr5_2:72031908-72031927 Msa0786500:intron 20.0%
!! AAAATCAATAAAACAACCAA+TGG + chr5_2:72032458-72032477 None:intergenic 20.0%
!! GTGATTGAAAAATTTAAAGA+AGG - chr5_2:72033108-72033127 Msa0786500:intron 20.0%
!! AATACATAAATCAAAATGGA+GGG + chr5_2:72033647-72033666 None:intergenic 20.0%
!! AAATACATAAATCAAAATGG+AGG + chr5_2:72033648-72033667 None:intergenic 20.0%
!! AGCAAATACATAAATCAAAA+TGG + chr5_2:72033651-72033670 None:intergenic 20.0%
! TGAATGAATGAATGAAATGA+GGG + chr5_2:72026546-72026565 None:intergenic 25.0%
! ATGAATGAATGAATGAAATG+AGG + chr5_2:72026547-72026566 None:intergenic 25.0%
! AACTGTAATTGCTTAGTTAT+TGG - chr5_2:72026720-72026739 Msa0786500:CDS 25.0%
! ACTGTAATTGCTTAGTTATT+GGG - chr5_2:72026721-72026740 Msa0786500:CDS 25.0%
! CGAAAATGAAAGTAGAATTT+CGG - chr5_2:72026785-72026804 Msa0786500:CDS 25.0%
! GAAAATGAAAGTAGAATTTC+GGG - chr5_2:72026786-72026805 Msa0786500:CDS 25.0%
! AAAATGAAAGTAGAATTTCG+GGG - chr5_2:72026787-72026806 Msa0786500:CDS 25.0%
! TGACGACATAATTATAAACA+TGG + chr5_2:72026884-72026903 None:intergenic 25.0%
! ATTGTCCATTTGAATTGAAA+CGG + chr5_2:72026995-72027014 None:intergenic 25.0%
!! TATTCAGATGTATTTGAAGT+TGG - chr5_2:72027049-72027068 Msa0786500:CDS 25.0%
!! ATTCAGATGTATTTGAAGTT+GGG - chr5_2:72027050-72027069 Msa0786500:CDS 25.0%
! AGAGTAAAAAAACAAACCAA+CGG + chr5_2:72027197-72027216 None:intergenic 25.0%
! AATGCTGGAAATAAAAACAA+AGG - chr5_2:72027448-72027467 Msa0786500:CDS 25.0%
! ATGCTGGAAATAAAAACAAA+GGG - chr5_2:72027449-72027468 Msa0786500:CDS 25.0%
! ACATATATTCTTTCCCTTAT+AGG - chr5_2:72027968-72027987 Msa0786500:intron 25.0%
! TCCAAAATGTTATCCTATAA+GGG + chr5_2:72027984-72028003 None:intergenic 25.0%
! ATCCAAAATGTTATCCTATA+AGG + chr5_2:72027985-72028004 None:intergenic 25.0%
! TAGATATCCTTATGTACTTT+AGG - chr5_2:72028642-72028661 Msa0786500:intron 25.0%
! AGATATCCTTATGTACTTTA+GGG - chr5_2:72028643-72028662 Msa0786500:intron 25.0%
!!! TTTAGCTTGAAATACTCATA+AGG + chr5_2:72028839-72028858 None:intergenic 25.0%
! AAAAAATAAAGAAAAGGCAG+AGG - chr5_2:72028999-72029018 Msa0786500:intron 25.0%
! GACAAACAATACAAATTTCT+AGG + chr5_2:72029066-72029085 None:intergenic 25.0%
! ATCTTTAATAGTCATCTTCT+TGG + chr5_2:72029253-72029272 None:intergenic 25.0%
! GATGACTATTAAAGATTTCA+AGG - chr5_2:72029257-72029276 Msa0786500:intron 25.0%
!! AAATTGACTCTTGTTAATTG+AGG - chr5_2:72029322-72029341 Msa0786500:intron 25.0%
! TATGTAATTGGCACTAATTT+GGG + chr5_2:72029443-72029462 None:intergenic 25.0%
! ATATGTAATTGGCACTAATT+TGG + chr5_2:72029444-72029463 None:intergenic 25.0%
! AGTGTTGCAATATATGTAAT+TGG + chr5_2:72029455-72029474 None:intergenic 25.0%
! GGAAAGAAAGTTATATATGA+AGG + chr5_2:72029912-72029931 None:intergenic 25.0%
! TTCTTATAATAACATTGGTG+TGG + chr5_2:72030015-72030034 None:intergenic 25.0%
!! AAAAGGTCAAGAACATTTTT+GGG - chr5_2:72030210-72030229 Msa0786500:intron 25.0%
! ACTTATTGAAAATTAGGACT+TGG + chr5_2:72030296-72030315 None:intergenic 25.0%
!! TAAAAGCATGATGATTTAGT+TGG - chr5_2:72030443-72030462 Msa0786500:intron 25.0%
! CTAATATAGACCTCTTAAAA+AGG + chr5_2:72031228-72031247 None:intergenic 25.0%
!!! TTTTTGAGATTCATTGTCTT+AGG - chr5_2:72031352-72031371 Msa0786500:intron 25.0%
! ACTTCAGATCATAGATAAAT+TGG + chr5_2:72031384-72031403 None:intergenic 25.0%
! AAAACAATACTAATTCCACT+AGG + chr5_2:72031474-72031493 None:intergenic 25.0%
!! AGTGGAATTAGTATTGTTTT+TGG - chr5_2:72031474-72031493 Msa0786500:intron 25.0%
!!! ATTAGTATTGTTTTTGGAAG+TGG - chr5_2:72031480-72031499 Msa0786500:intron 25.0%
! TTAACATATGTTGGGATAAA+AGG - chr5_2:72031724-72031743 Msa0786500:CDS 25.0%
! CTTAGCAAGGTTAAATAAAT+TGG - chr5_2:72031840-72031859 Msa0786500:intron 25.0%
! TAAAGTTTAATCTCTTCATC+AGG + chr5_2:72031877-72031896 None:intergenic 25.0%
! GAGATTAAACTTTATAAGGT+TGG - chr5_2:72031883-72031902 Msa0786500:intron 25.0%
! TATTAATCAATCATAACCGT+TGG - chr5_2:72031972-72031991 Msa0786500:intron 25.0%
! ATTATGATTAAAGTCACCAA+CGG + chr5_2:72031991-72032010 None:intergenic 25.0%
! GTTAACATTTGAAGAAAACA+AGG - chr5_2:72032394-72032413 Msa0786500:intron 25.0%
!! TTCAAGTTAAGCTTATGAAA+AGG + chr5_2:72032690-72032709 None:intergenic 25.0%
!! TTCCTAATTTTACTCCTATT+TGG - chr5_2:72033727-72033746 Msa0786500:five_prime_UTR 25.0%
! TACCAAATAGGAGTAAAATT+AGG + chr5_2:72033732-72033751 None:intergenic 25.0%
!! TAATTTTACTCCTATTTGGT+AGG - chr5_2:72033731-72033750 Msa0786500:five_prime_UTR 25.0%
TCATTCATTCATTCATGTGT+TGG - chr5_2:72026551-72026570 Msa0786500:exon 30.0%
!! ACTCTAAAACTTCTGATTGA+AGG + chr5_2:72026602-72026621 None:intergenic 30.0%
GAAATTAAGCCATGTTTGTT+TGG + chr5_2:72026662-72026681 None:intergenic 30.0%
AACATGGCTTAATTTCTTCT+TGG - chr5_2:72026666-72026685 Msa0786500:CDS 30.0%
! TTCAGATGTATTTGAAGTTG+GGG - chr5_2:72027051-72027070 Msa0786500:CDS 30.0%
TAGATCCAAGAATTGATTGA+GGG + chr5_2:72027105-72027124 None:intergenic 30.0%
TTAGATCCAAGAATTGATTG+AGG + chr5_2:72027106-72027125 None:intergenic 30.0%
AAAAAAACAAACCAACGGAA+GGG + chr5_2:72027192-72027211 None:intergenic 30.0%
TAAAAAAACAAACCAACGGA+AGG + chr5_2:72027193-72027212 None:intergenic 30.0%
!!! TTTGTTTTTTTACTCTGAGC+AGG - chr5_2:72027201-72027220 Msa0786500:CDS 30.0%
GTGTACTAACTTATCCAAAA+GGG - chr5_2:72027225-72027244 Msa0786500:CDS 30.0%
TGTACTAACTTATCCAAAAG+GGG - chr5_2:72027226-72027245 Msa0786500:CDS 30.0%
! TGAATCTAGTTCCAAATACA+AGG + chr5_2:72027273-72027292 None:intergenic 30.0%
AATAAGAACTCAGTAAGAAG+AGG - chr5_2:72027359-72027378 Msa0786500:CDS 30.0%
!!! TATGTTTGGGAGTTGTTTTT+TGG + chr5_2:72027658-72027677 None:intergenic 30.0%
TAAATGCAACAAACAGCTAA+GGG + chr5_2:72027681-72027700 None:intergenic 30.0%
!! ATTGATTTTTCTTACCTCGT+GGG - chr5_2:72027793-72027812 Msa0786500:intron 30.0%
TTTACATCAACAACAGCAAA+AGG + chr5_2:72027824-72027843 None:intergenic 30.0%
! GGAAATAAACTAGTTTAGCA+AGG + chr5_2:72027855-72027874 None:intergenic 30.0%
! GTTTATTTCCACTTGTTAGT+TGG - chr5_2:72027865-72027884 Msa0786500:CDS 30.0%
AACGTAGAATTTGAATGAGA+GGG + chr5_2:72027924-72027943 None:intergenic 30.0%
TAACGTAGAATTTGAATGAG+AGG + chr5_2:72027925-72027944 None:intergenic 30.0%
GGAAAGAATATATGTACAAG+TGG + chr5_2:72027963-72027982 None:intergenic 30.0%
! TCCCTTATAGGATAACATTT+TGG - chr5_2:72027980-72027999 Msa0786500:intron 30.0%
!! TTGACTTGTTGAATGAAAGA+AGG - chr5_2:72028054-72028073 Msa0786500:intron 30.0%
!! TGACTTGTTGAATGAAAGAA+GGG - chr5_2:72028055-72028074 Msa0786500:intron 30.0%
AGAGAGAGAAAGAGTAATAT+AGG - chr5_2:72028140-72028159 Msa0786500:intron 30.0%
ACAATGAATATTTGCCCTAA+AGG - chr5_2:72028190-72028209 Msa0786500:intron 30.0%
CAACATATCATCTACCTTTA+GGG + chr5_2:72028207-72028226 None:intergenic 30.0%
ACAACATATCATCTACCTTT+AGG + chr5_2:72028208-72028227 None:intergenic 30.0%
! GGTTGTTGTTGTTGTTATAA+AGG - chr5_2:72028268-72028287 Msa0786500:intron 30.0%
TACTTAGTCCTTCTTTGAAT+TGG + chr5_2:72028486-72028505 None:intergenic 30.0%
! TACTTCGCCTGATTTAATTT+GGG + chr5_2:72028669-72028688 None:intergenic 30.0%
TAGCAAACTATTGCCATATT+CGG - chr5_2:72028687-72028706 Msa0786500:intron 30.0%
AACTCGATAACAGTTCTTTA+TGG - chr5_2:72028726-72028745 Msa0786500:CDS 30.0%
TTTAGGCAGAGTTCAAATTT+CGG + chr5_2:72028781-72028800 None:intergenic 30.0%
CAATAGAAAGTGAAAGTTAG+CGG + chr5_2:72028882-72028901 None:intergenic 30.0%
TTATATTGGAATATCTGCAC+TGG - chr5_2:72028918-72028937 Msa0786500:intron 30.0%
! ACTAATTTGGGATAGAGTAT+CGG + chr5_2:72029431-72029450 None:intergenic 30.0%
ATTATGTGCAAAGATCCTAT+GGG + chr5_2:72029686-72029705 None:intergenic 30.0%
AATTATGTGCAAAGATCCTA+TGG + chr5_2:72029687-72029706 None:intergenic 30.0%
TAGTGTTTGTGAAAGTGATA+TGG + chr5_2:72029736-72029755 None:intergenic 30.0%
AAGAGGATTATTACTCAAGA+AGG + chr5_2:72029933-72029952 None:intergenic 30.0%
! ATCCTTAAGTATTTGAAGTC+TGG + chr5_2:72029962-72029981 None:intergenic 30.0%
AAGAAATGTTTGGTTAGTGT+TGG - chr5_2:72030030-72030049 Msa0786500:intron 30.0%
!! AGTCAATACCATTAACTTGT+GGG + chr5_2:72030073-72030092 None:intergenic 30.0%
! TAGTCAATACCATTAACTTG+TGG + chr5_2:72030074-72030093 None:intergenic 30.0%
TTTAGAGAAACAGGTAGATT+GGG + chr5_2:72030179-72030198 None:intergenic 30.0%
!! TTTTAGAGAAACAGGTAGAT+TGG + chr5_2:72030180-72030199 None:intergenic 30.0%
! TCTAAAATGTCTCTCTGAAA+AGG - chr5_2:72030193-72030212 Msa0786500:intron 30.0%
! GAAAAGGTCAAGAACATTTT+TGG - chr5_2:72030209-72030228 Msa0786500:intron 30.0%
ATGATGATTTAGTTGGAAGA+AGG - chr5_2:72030450-72030469 Msa0786500:intron 30.0%
GAAGGTAAAAATTTGCCATA+TGG - chr5_2:72030468-72030487 Msa0786500:intron 30.0%
! AAAATGCTTGCTAAAGAGTT+TGG - chr5_2:72030611-72030630 Msa0786500:intron 30.0%
TTGAAGTAATTCACATAACC+CGG - chr5_2:72030856-72030875 Msa0786500:intron 30.0%
ATGGCAAACATTATATTAGC+AGG + chr5_2:72030952-72030971 None:intergenic 30.0%
AAATCTAATGCAATCAGTCA+TGG + chr5_2:72030971-72030990 None:intergenic 30.0%
TTCAATGTAATCACATGTGT+CGG + chr5_2:72031070-72031089 None:intergenic 30.0%
GAATTAATGAAGCACAAACA+CGG + chr5_2:72031147-72031166 None:intergenic 30.0%
CTCATTCTGATTTAAATTGC+AGG - chr5_2:72031417-72031436 Msa0786500:intron 30.0%
TTCTGATTTAAATTGCAGGT+TGG - chr5_2:72031421-72031440 Msa0786500:intron 30.0%
AAGCTTGATTACTAAACAAC+TGG + chr5_2:72032150-72032169 None:intergenic 30.0%
TTGCATATAACTTACCAGAA+GGG - chr5_2:72032221-72032240 Msa0786500:intron 30.0%
ACTGAAGATACCAAAAGAAA+AGG + chr5_2:72032253-72032272 None:intergenic 30.0%
ACATGCTCACAAATAACATT+TGG + chr5_2:72032365-72032384 None:intergenic 30.0%
TGCACATATTCTAAGTATGA+AGG + chr5_2:72032576-72032595 None:intergenic 30.0%
AACCTCAAAAAGAAAATACC+TGG + chr5_2:72032605-72032624 None:intergenic 30.0%
CAATGCTTCATTATCTTGAT+CGG + chr5_2:72033313-72033332 None:intergenic 30.0%
!! TCAAGATAATGAAGCATTGA+AGG - chr5_2:72033314-72033333 Msa0786500:intron 30.0%
!!! AACTTGTCGTTTTTTGAGTT+TGG + chr5_2:72033433-72033452 None:intergenic 30.0%
! ATCTTGAATCTCAGCAATTT+TGG + chr5_2:72033463-72033482 None:intergenic 30.0%
TGTTGAAGATCAAATTCCAA+AGG - chr5_2:72033569-72033588 Msa0786500:intron 30.0%
!! ATGAATGAAGGTACCTTCTT+TGG + chr5_2:72026506-72026525 None:intergenic 35.0%
TCAAATATCACAGCCTAGAT+GGG - chr5_2:72026750-72026769 Msa0786500:CDS 35.0%
! TCAGATGTATTTGAAGTTGG+GGG - chr5_2:72027052-72027071 Msa0786500:CDS 35.0%
TTGAAGTTGGGGGTTATAAA+TGG - chr5_2:72027062-72027081 Msa0786500:CDS 35.0%
ACATTCCCTCAATCAATTCT+TGG - chr5_2:72027097-72027116 Msa0786500:CDS 35.0%
CGTGTACTAACTTATCCAAA+AGG - chr5_2:72027224-72027243 Msa0786500:CDS 35.0%
ACTATCGTCATGCTAATTTG+TGG + chr5_2:72027326-72027345 None:intergenic 35.0%
CTGTAAGGAACAAACTGAAT+AGG + chr5_2:72027388-72027407 None:intergenic 35.0%
TGTATGTTAAAGAGCAATGC+TGG - chr5_2:72027433-72027452 Msa0786500:CDS 35.0%
! GTAACTTGTAAGGGTATGTT+TGG - chr5_2:72027476-72027495 Msa0786500:intron 35.0%
! AAACAGCTAAGGGTATGTTT+GGG + chr5_2:72027671-72027690 None:intergenic 35.0%
GTAAATGCAACAAACAGCTA+AGG + chr5_2:72027682-72027701 None:intergenic 35.0%
CACGAGGTAAGAAAAATCAA+TGG + chr5_2:72027794-72027813 None:intergenic 35.0%
!!! CATTGATTTTTCTTACCTCG+TGG - chr5_2:72027792-72027811 Msa0786500:intron 35.0%
TCTCTTCTTTCTCATCCAAA+AGG + chr5_2:72028105-72028124 None:intergenic 35.0%
AATATAGGAGAGAGATAGAG+AGG - chr5_2:72028155-72028174 Msa0786500:intron 35.0%
TCAAAGAAGGACTAAGTAGT+TGG - chr5_2:72028488-72028507 Msa0786500:intron 35.0%
CAAAGAAGGACTAAGTAGTT+GGG - chr5_2:72028489-72028508 Msa0786500:intron 35.0%
AAAGAAGGACTAAGTAGTTG+GGG - chr5_2:72028490-72028509 Msa0786500:intron 35.0%
CAATTCACCTTGAGATATGA+AGG + chr5_2:72028524-72028543 None:intergenic 35.0%
! AGACATTGCAGAGCATTTAA+CGG - chr5_2:72028615-72028634 Msa0786500:intron 35.0%
! TTTAGGGCCCAAATTAAATC+AGG - chr5_2:72028659-72028678 Msa0786500:intron 35.0%
CTACTTCGCCTGATTTAATT+TGG + chr5_2:72028670-72028689 None:intergenic 35.0%
TTGATTGCAATAGCCGAATA+TGG + chr5_2:72028703-72028722 None:intergenic 35.0%
TTAGGCAGAGTTCAAATTTC+GGG + chr5_2:72028780-72028799 None:intergenic 35.0%
TCACCTCTACAGTATCATAA+AGG - chr5_2:72029023-72029042 Msa0786500:intron 35.0%
AGACCTTTATGATACTGTAG+AGG + chr5_2:72029029-72029048 None:intergenic 35.0%
CATTAGTTACACTATTGCAG+TGG - chr5_2:72029286-72029305 Msa0786500:intron 35.0%
AAATGTAAGCTGGGAATGAT+TGG + chr5_2:72029501-72029520 None:intergenic 35.0%
TCAATTGGCAAATGTAAGCT+GGG + chr5_2:72029510-72029529 None:intergenic 35.0%
TTCAATTGGCAAATGTAAGC+TGG + chr5_2:72029511-72029530 None:intergenic 35.0%
TTTGCCAATTGAAGTTCAGT+AGG - chr5_2:72029518-72029537 Msa0786500:CDS 35.0%
TTGCCAATTGAAGTTCAGTA+GGG - chr5_2:72029519-72029538 Msa0786500:CDS 35.0%
GTTAGAAAAACCAACATGAG+AGG - chr5_2:72029554-72029573 Msa0786500:CDS 35.0%
AGAGAAATTACCTCTCATGT+TGG + chr5_2:72029567-72029586 None:intergenic 35.0%
TTATGTGCAAAGATCCTATG+GGG + chr5_2:72029685-72029704 None:intergenic 35.0%
GATCTTTGCACATAATTTCG+AGG - chr5_2:72029690-72029709 Msa0786500:intron 35.0%
GTGATAGATGGTTTACCTTA+GGG + chr5_2:72029857-72029876 None:intergenic 35.0%
TGTGATAGATGGTTTACCTT+AGG + chr5_2:72029858-72029877 None:intergenic 35.0%
ACACTTATGCAGATTATGCA+GGG + chr5_2:72029886-72029905 None:intergenic 35.0%
AACACTTATGCAGATTATGC+AGG + chr5_2:72029887-72029906 None:intergenic 35.0%
TTGAGTAATAATCCTCTTCC+AGG - chr5_2:72029935-72029954 Msa0786500:intron 35.0%
GACCAGACTTCAAATACTTA+AGG - chr5_2:72029957-72029976 Msa0786500:intron 35.0%
! ATGTTTGGTTAGTGTTGGAT+AGG - chr5_2:72030035-72030054 Msa0786500:intron 35.0%
! TGAGTTTTCCCACAAGTTAA+TGG - chr5_2:72030062-72030081 Msa0786500:intron 35.0%
AATCTTGTGATTCTGCTCAA+TGG - chr5_2:72030133-72030152 Msa0786500:intron 35.0%
ATCTTGTGATTCTGCTCAAT+GGG - chr5_2:72030134-72030153 Msa0786500:intron 35.0%
!! GAGAGACATTTTAGAGAAAC+AGG + chr5_2:72030188-72030207 None:intergenic 35.0%
GACATCAAGATAACCTTGTT+TGG - chr5_2:72030232-72030251 Msa0786500:intron 35.0%
! AAGATAACCTTGTTTGGAGT+AGG - chr5_2:72030238-72030257 Msa0786500:intron 35.0%
! TGAAGTACTTTCTTGGATAG+AGG + chr5_2:72030267-72030286 None:intergenic 35.0%
!! TCTATCCAAGAAAGTACTTC+AGG - chr5_2:72030266-72030285 Msa0786500:intron 35.0%
! GAAAACCTGAAGTACTTTCT+TGG + chr5_2:72030274-72030293 None:intergenic 35.0%
!! GCATTTTGGCATTAAAAGCA+TGG - chr5_2:72030316-72030335 Msa0786500:intron 35.0%
! TCAAAAGTGTAAAAACCGCA+AGG + chr5_2:72030496-72030515 None:intergenic 35.0%
! GCTGTCTTTTAGTCATATGT+TGG - chr5_2:72030821-72030840 Msa0786500:intron 35.0%
!! GATCAGAAGTGTTAGTGTTA+CGG + chr5_2:72031024-72031043 None:intergenic 35.0%
!! GTTCATGCATCCTTTTTAAG+AGG - chr5_2:72031215-72031234 Msa0786500:CDS 35.0%
ACGAGAAGAAAAAGAAACTG+TGG + chr5_2:72031310-72031329 None:intergenic 35.0%
GTTATACGATCCTGAAAAAG+AGG - chr5_2:72031669-72031688 Msa0786500:CDS 35.0%
ATCCTGAAAAAGAGGAGTTA+CGG - chr5_2:72031677-72031696 Msa0786500:CDS 35.0%
ACATATGTTGGGATAAAAGG+TGG - chr5_2:72031727-72031746 Msa0786500:CDS 35.0%
AATGCATATGATGTCCACTA+TGG + chr5_2:72031754-72031773 None:intergenic 35.0%
CCAACATAACTGCAATGAAA+GGG + chr5_2:72031778-72031797 None:intergenic 35.0%
TCCAACATAACTGCAATGAA+AGG + chr5_2:72031779-72031798 None:intergenic 35.0%
AACCTTGCTAAGATTTCTGA+TGG + chr5_2:72031832-72031851 None:intergenic 35.0%
TCAAGCTTGCACGTTATTAA+TGG - chr5_2:72032162-72032181 Msa0786500:intron 35.0%
CTTGCATATAACTTACCAGA+AGG - chr5_2:72032220-72032239 Msa0786500:intron 35.0%
! AGGGAAATGACCTTTTCTTT+TGG - chr5_2:72032240-72032259 Msa0786500:intron 35.0%
TATTATGCGTATTTGTGTGC+AGG - chr5_2:72032325-72032344 Msa0786500:intron 35.0%
! CCATTTTCTAACTGCATTCA+TGG + chr5_2:72032486-72032505 None:intergenic 35.0%
CCATGAATGCAGTTAGAAAA+TGG - chr5_2:72032483-72032502 Msa0786500:intron 35.0%
TGAATGCAGTTAGAAAATGG+TGG - chr5_2:72032486-72032505 Msa0786500:intron 35.0%
CTTTCAGAAAGTTTCTGCAA+TGG - chr5_2:72032518-72032537 Msa0786500:intron 35.0%
TACTTAGAATATGTGCACAG+TGG - chr5_2:72032579-72032598 Msa0786500:intron 35.0%
! TTTTGTCAACATTCGTCTGT+TGG + chr5_2:72032810-72032829 None:intergenic 35.0%
!!! TTTTGAAGTGTTGGATTTCC+AGG + chr5_2:72032890-72032909 None:intergenic 35.0%
!!! ACTGACTACTTTTGAAGTGT+TGG + chr5_2:72032899-72032918 None:intergenic 35.0%
AAAAGTAGTCAGTGTAGACT+TGG - chr5_2:72032906-72032925 Msa0786500:CDS 35.0%
!! ATCGACAGAGTTTTATCAGA+AGG - chr5_2:72032970-72032989 Msa0786500:CDS 35.0%
!! TCGACAGAGTTTTATCAGAA+GGG - chr5_2:72032971-72032990 Msa0786500:CDS 35.0%
TTCAATCACGTCCTCTTTAA+AGG + chr5_2:72033097-72033116 None:intergenic 35.0%
TCTCACCAATTAGAACAAGT+CGG - chr5_2:72033198-72033217 Msa0786500:CDS 35.0%
! TCAAAAAACGACAAGTTGAC+AGG - chr5_2:72033436-72033455 Msa0786500:exon 35.0%
! CAAAAAACGACAAGTTGACA+GGG - chr5_2:72033437-72033456 Msa0786500:exon 35.0%
GCAGTAAGCATGATGAATGA+AGG + chr5_2:72026518-72026537 None:intergenic 40.0%
! TTCATTCATGTGTTGGTGCT+AGG - chr5_2:72026558-72026577 Msa0786500:exon 40.0%
CTCCTCAAACCAAACAAACA+TGG - chr5_2:72026650-72026669 Msa0786500:CDS 40.0%
!! AGCCATGTTTGTTTGGTTTG+AGG + chr5_2:72026655-72026674 None:intergenic 40.0%
CTCAAATATCACAGCCTAGA+TGG - chr5_2:72026749-72026768 Msa0786500:CDS 40.0%
GAAAGTAGAATTTCGGGGAT+AGG - chr5_2:72026792-72026811 Msa0786500:CDS 40.0%
CATTTGAATTGAAACGGCGA+AGG + chr5_2:72026989-72027008 None:intergenic 40.0%
CTTCGCCGTTTCAATTCAAA+TGG - chr5_2:72026987-72027006 Msa0786500:CDS 40.0%
GGGCTATTTGTCCTTGTATT+TGG - chr5_2:72027259-72027278 Msa0786500:CDS 40.0%
GATTCAACAAGTTTGCCCAA+CGG - chr5_2:72027287-72027306 Msa0786500:CDS 40.0%
!! AAAGGGCGTTGTAACTTGTA+AGG - chr5_2:72027466-72027485 Msa0786500:CDS 40.0%
!! AAGGGCGTTGTAACTTGTAA+GGG - chr5_2:72027467-72027486 Msa0786500:CDS 40.0%
! CTTGTAAGGGTATGTTTGGA+TGG - chr5_2:72027480-72027499 Msa0786500:intron 40.0%
!!! GAGTTGTTTTTTGGAGGCTT+AGG + chr5_2:72027649-72027668 None:intergenic 40.0%
!!! GTTTGGGAGTTGTTTTTTGG+AGG + chr5_2:72027655-72027674 None:intergenic 40.0%
! CAAACAGCTAAGGGTATGTT+TGG + chr5_2:72027672-72027691 None:intergenic 40.0%
ACAATCTACCACAATCATGC+AGG + chr5_2:72027760-72027779 None:intergenic 40.0%
AGAATGGTCCAACTAACAAG+TGG + chr5_2:72027876-72027895 None:intergenic 40.0%
! AAGTCTTATCCCACTAAGTG+AGG + chr5_2:72028248-72028267 None:intergenic 40.0%
TCACTTAGTGGGATAAGACT+TGG - chr5_2:72028247-72028266 Msa0786500:intron 40.0%
ATTGGAGCTGCATATCTACA+TGG + chr5_2:72028468-72028487 None:intergenic 40.0%
ATGCAGCTCCAATTCAAAGA+AGG - chr5_2:72028475-72028494 Msa0786500:intron 40.0%
TTTGCGTCCTTCATATCTCA+AGG - chr5_2:72028514-72028533 Msa0786500:intron 40.0%
! AGTTGAAGTAACTTGCAGTG+TGG - chr5_2:72028585-72028604 Msa0786500:CDS 40.0%
ATGCTCTGCAATGTCTTTCT+CGG + chr5_2:72028611-72028630 None:intergenic 40.0%
TTTGGGCCCTAAAGTACATA+AGG + chr5_2:72028652-72028671 None:intergenic 40.0%
TAGGCAGAGTTCAAATTTCG+GGG + chr5_2:72028779-72028798 None:intergenic 40.0%
TCTGCACTGGATTTGTACAT+TGG - chr5_2:72028931-72028950 Msa0786500:intron 40.0%
CTGCACTGGATTTGTACATT+GGG - chr5_2:72028932-72028951 Msa0786500:intron 40.0%
GAAGAGATTGAAGAGAGAAC+AGG - chr5_2:72028963-72028982 Msa0786500:intron 40.0%
GAAAACTCCTCACTTTGTCA+GGG + chr5_2:72029224-72029243 None:intergenic 40.0%
TGAAAACTCCTCACTTTGTC+AGG + chr5_2:72029225-72029244 None:intergenic 40.0%
CATCCCTACTGAACTTCAAT+TGG + chr5_2:72029525-72029544 None:intergenic 40.0%
TTGAAGTTCAGTAGGGATGA+TGG - chr5_2:72029526-72029545 Msa0786500:CDS 40.0%
!! TAAGTTGATCTCTATGTGCC+TGG - chr5_2:72029598-72029617 Msa0786500:intron 40.0%
TGGTACTACCATGTTGTACT+GGG - chr5_2:72029618-72029637 Msa0786500:intron 40.0%
TTATCATAGAGTAGCCCCAT+AGG - chr5_2:72029668-72029687 Msa0786500:intron 40.0%
!! GAGGAAGCATTTCGAGTTAT+GGG + chr5_2:72029762-72029781 None:intergenic 40.0%
! CAGGGCTACTGCATATTTTT+GGG + chr5_2:72029803-72029822 None:intergenic 40.0%
! TCAGGGCTACTGCATATTTT+TGG + chr5_2:72029804-72029823 None:intergenic 40.0%
AAAAATATGCAGTAGCCCTG+AGG - chr5_2:72029803-72029822 Msa0786500:intron 40.0%
! AAGTATTTGAAGTCTGGTCC+TGG + chr5_2:72029956-72029975 None:intergenic 40.0%
TATTGAGCCTTCTCTACTTG+TGG - chr5_2:72030092-72030111 Msa0786500:intron 40.0%
ATTGAGCCTTCTCTACTTGT+GGG - chr5_2:72030093-72030112 Msa0786500:intron 40.0%
! GGCATTAAAAGCATGGAAGT+AGG - chr5_2:72030323-72030342 Msa0786500:intron 40.0%
! AAAAGCATGGAAGTAGGACT+TGG - chr5_2:72030329-72030348 Msa0786500:intron 40.0%
AAAGCATGGAAGTAGGACTT+GGG - chr5_2:72030330-72030349 Msa0786500:intron 40.0%
ATTTGCCATATGGTTCCTTG+CGG - chr5_2:72030478-72030497 Msa0786500:intron 40.0%
AAAAACCGCAAGGAACCATA+TGG + chr5_2:72030486-72030505 None:intergenic 40.0%
ACCATACATATCGTCCTAGT+AGG - chr5_2:72030681-72030700 Msa0786500:intron 40.0%
GCTTCAAAAGAGGGTTTCAT+TGG + chr5_2:72030707-72030726 None:intergenic 40.0%
!! AAGAAGCTCCAAGTTTTGTC+CGG + chr5_2:72030878-72030897 None:intergenic 40.0%
TAGATTTCATTTCCTGTGCC+AGG - chr5_2:72030984-72031003 Msa0786500:CDS 40.0%
GTGTTACGGAGATTAACTGT+TGG + chr5_2:72031010-72031029 None:intergenic 40.0%
TATGCAACAACACATGCTAG+TGG - chr5_2:72031261-72031280 Msa0786500:intron 40.0%
TTCTTCTCGTAATGCTTGTG+AGG - chr5_2:72031320-72031339 Msa0786500:intron 40.0%
TTTGTAAACTTTCCAAGGGG+TGG - chr5_2:72031448-72031467 Msa0786500:intron 40.0%
! TCTTCTTGAGTAGTGGAATG+GGG + chr5_2:72031621-72031640 None:intergenic 40.0%
! CTCTTCTTGAGTAGTGGAAT+GGG + chr5_2:72031622-72031641 None:intergenic 40.0%
! TCTCTTCTTGAGTAGTGGAA+TGG + chr5_2:72031623-72031642 None:intergenic 40.0%
TTCCACTACTCAAGAAGAGA+TGG - chr5_2:72031623-72031642 Msa0786500:CDS 40.0%
TCCACTACTCAAGAAGAGAT+GGG - chr5_2:72031624-72031643 Msa0786500:CDS 40.0%
! TACCGTAACTCCTCTTTTTC+AGG + chr5_2:72031682-72031701 None:intergenic 40.0%
GAAAAAGAGGAGTTACGGTA+CGG - chr5_2:72031682-72031701 Msa0786500:CDS 40.0%
CCCTTTCATTGCAGTTATGT+TGG - chr5_2:72031775-72031794 Msa0786500:intron 40.0%
AGCCATCAGAAATCTTAGCA+AGG - chr5_2:72031827-72031846 Msa0786500:intron 40.0%
AGAAAAGGTCATTTCCCTTC+TGG + chr5_2:72032238-72032257 None:intergenic 40.0%
ACACTGAGTTACTGTACCAT+TGG - chr5_2:72032439-72032458 Msa0786500:intron 40.0%
! TCTAAGTATGAAGGCACATC+AGG + chr5_2:72032567-72032586 None:intergenic 40.0%
! GGCCAGGTATTTTCTTTTTG+AGG - chr5_2:72032600-72032619 Msa0786500:intron 40.0%
TCTTTGTCTGATGGAGATAG+AGG + chr5_2:72032739-72032758 None:intergenic 40.0%
TCCATCAGACAAAGAATCCA+AGG - chr5_2:72032744-72032763 Msa0786500:intron 40.0%
TCCTTGGATTCTTTGTCTGA+TGG + chr5_2:72032748-72032767 None:intergenic 40.0%
ATCCAAGGATGAAGAATCAG+TGG - chr5_2:72032759-72032778 Msa0786500:intron 40.0%
TGAAGCTCAACAGTCAAAAG+AGG - chr5_2:72032834-72032853 Msa0786500:intron 40.0%
! GAGACCACTTATGATGATGA+AGG - chr5_2:72032862-72032881 Msa0786500:CDS 40.0%
! GACAGAATGCTGGGATTTTA+AGG + chr5_2:72033007-72033026 None:intergenic 40.0%
! GAGGGATATCACCTTTAAAG+AGG - chr5_2:72033083-72033102 Msa0786500:intron 40.0%
CACTCCTGAAGTTAAGTTCA+AGG - chr5_2:72033134-72033153 Msa0786500:intron 40.0%
ACTGCCTTGAACTTAACTTC+AGG + chr5_2:72033141-72033160 None:intergenic 40.0%
! GACTTGTTCTAATTGGTGAG+AGG + chr5_2:72033199-72033218 None:intergenic 40.0%
!! CAACACCGACTTGTTCTAAT+TGG + chr5_2:72033206-72033225 None:intergenic 40.0%
ACCTTCTCAACAACATTGTG+AGG - chr5_2:72033232-72033251 Msa0786500:CDS 40.0%
TCCTCACAATGTTGTTGAGA+AGG + chr5_2:72033236-72033255 None:intergenic 40.0%
AACAACATTGTGAGGATGCT+TGG - chr5_2:72033240-72033259 Msa0786500:CDS 40.0%
ACAACATTGTGAGGATGCTT+GGG - chr5_2:72033241-72033260 Msa0786500:CDS 40.0%
! ATCTGTGACGGAAGTCTTTA+AGG + chr5_2:72033361-72033380 None:intergenic 40.0%
! CTGTGTTTGTTGATCTGTGA+CGG + chr5_2:72033373-72033392 None:intergenic 40.0%
TCCAAAGGCTCAAACTGAAT+TGG - chr5_2:72033584-72033603 Msa0786500:intron 40.0%
TCCAATTCAGTTTGAGCCTT+TGG + chr5_2:72033588-72033607 None:intergenic 40.0%
! CTTCTGATTGAAGGTGTGTC+TGG + chr5_2:72026593-72026612 None:intergenic 45.0%
AATATCACAGCCTAGATGGG+AGG - chr5_2:72026753-72026772 Msa0786500:CDS 45.0%
GGACAAATAGCCCATCACAA+CGG + chr5_2:72027252-72027271 None:intergenic 45.0%
GGATTAACACTCCAACCGTT+GGG + chr5_2:72027305-72027324 None:intergenic 45.0%
TGGATTAACACTCCAACCGT+TGG + chr5_2:72027306-72027325 None:intergenic 45.0%
! GTAAGGGTATGTTTGGATGG+AGG - chr5_2:72027483-72027502 Msa0786500:intron 45.0%
CTGACAAACCTGCATGATTG+TGG - chr5_2:72027749-72027768 Msa0786500:intron 45.0%
! AGCAAAAGGTTTTTCCCACG+AGG + chr5_2:72027810-72027829 None:intergenic 45.0%
AAGACGATCCACTCGTTAGT+TGG + chr5_2:72028082-72028101 None:intergenic 45.0%
ATAGGAGAGAGATAGAGAGG+AGG - chr5_2:72028158-72028177 Msa0786500:intron 45.0%
CTTATCCCACTAAGTGAGGT+CGG + chr5_2:72028244-72028263 None:intergenic 45.0%
AACTCTTTCCAAGTTCCCGA+GGG - chr5_2:72028341-72028360 Msa0786500:intron 45.0%
GAAGACCTTGCAGAACAGAT+TGG - chr5_2:72029171-72029190 Msa0786500:intron 45.0%
ACCTTGCAGAACAGATTGGA+AGG - chr5_2:72029175-72029194 Msa0786500:intron 45.0%
CCTTGCAGAACAGATTGGAA+GGG - chr5_2:72029176-72029195 Msa0786500:intron 45.0%
TTGTAGACCCTGACAAAGTG+AGG - chr5_2:72029214-72029233 Msa0786500:intron 45.0%
! CATCCATTCACCAGCTTTAG+GGG + chr5_2:72029478-72029497 None:intergenic 45.0%
GCATCCATTCACCAGCTTTA+GGG + chr5_2:72029479-72029498 None:intergenic 45.0%
CAGTACAACATGGTAGTACC+AGG + chr5_2:72029619-72029638 None:intergenic 45.0%
CTGGTACTACCATGTTGTAC+TGG - chr5_2:72029617-72029636 Msa0786500:intron 45.0%
TGGGTTGCATGCAATGCAAA+TGG - chr5_2:72029637-72029656 Msa0786500:intron 45.0%
!! GGAGGAAGCATTTCGAGTTA+TGG + chr5_2:72029763-72029782 None:intergenic 45.0%
!! GATGAAACTTGCTGACATGG+AGG + chr5_2:72029781-72029800 None:intergenic 45.0%
!! TGGGATGAAACTTGCTGACA+TGG + chr5_2:72029784-72029803 None:intergenic 45.0%
! ATGGTTTACCTTAGGGTGCT+GGG + chr5_2:72029850-72029869 None:intergenic 45.0%
GCAGGGTCAATTGTGATAGA+TGG + chr5_2:72029869-72029888 None:intergenic 45.0%
GCCTACTAGGACGATATGTA+TGG + chr5_2:72030685-72030704 None:intergenic 45.0%
! TGTGCTGCTGCTTCAAAAGA+GGG + chr5_2:72030716-72030735 None:intergenic 45.0%
! ATGTGCTGCTGCTTCAAAAG+AGG + chr5_2:72030717-72030736 None:intergenic 45.0%
CACATAACCCGGACAAAACT+TGG - chr5_2:72030867-72030886 Msa0786500:intron 45.0%
!! AGAAGCTCCAAGTTTTGTCC+GGG + chr5_2:72030877-72030896 None:intergenic 45.0%
! GTAATCACATGTGTCGGTGT+CGG + chr5_2:72031064-72031083 None:intergenic 45.0%
!!! TTGTTTTTGGAAGTGGAGCG+TGG - chr5_2:72031487-72031506 Msa0786500:intron 45.0%
!!! TGTTTTTGGAAGTGGAGCGT+GGG - chr5_2:72031488-72031507 Msa0786500:intron 45.0%
CCACTACTCAAGAAGAGATG+GGG - chr5_2:72031625-72031644 Msa0786500:CDS 45.0%
GGATAAAAGGTGGACCATAG+TGG - chr5_2:72031737-72031756 Msa0786500:intron 45.0%
TTGGAAGCCTCATTGTGAAC+TGG - chr5_2:72031794-72031813 Msa0786500:intron 45.0%
CATTCCTCCAGTTCACAATG+AGG + chr5_2:72031804-72031823 None:intergenic 45.0%
CCATGACTGCTTAACATGCA+AGG + chr5_2:72032125-72032144 None:intergenic 45.0%
CCTTGCATGTTAAGCAGTCA+TGG - chr5_2:72032122-72032141 Msa0786500:intron 45.0%
! ATGAAGGCACATCAGGATGT+CGG + chr5_2:72032560-72032579 None:intergenic 45.0%
GAGATAGAGGAATCTGGACA+AGG + chr5_2:72032726-72032745 None:intergenic 45.0%
CTGATGGAGATAGAGGAATC+TGG + chr5_2:72032732-72032751 None:intergenic 45.0%
!! CTCCACTGATTCTTCATCCT+TGG + chr5_2:72032764-72032783 None:intergenic 45.0%
CAAGGATGAAGAATCAGTGG+AGG - chr5_2:72032762-72032781 Msa0786500:intron 45.0%
GGTGCCTTCATCATCATAAG+TGG + chr5_2:72032869-72032888 None:intergenic 45.0%
!! CTTATGATGATGAAGGCACC+TGG - chr5_2:72032869-72032888 Msa0786500:CDS 45.0%
AAATCCCAGCATTCTGTCCA+AGG - chr5_2:72033009-72033028 Msa0786500:intron 45.0%
TTGTCCTTGGACAGAATGCT+GGG + chr5_2:72033016-72033035 None:intergenic 45.0%
CCAGTTTCGAAACTTGTCCT+TGG + chr5_2:72033029-72033048 None:intergenic 45.0%
CCAAGGACAAGTTTCGAAAC+TGG - chr5_2:72033026-72033045 Msa0786500:intron 45.0%
AGCAACTTCTTCAGGAACTG+AGG - chr5_2:72033064-72033083 Msa0786500:intron 45.0%
GCAACTTCTTCAGGAACTGA+GGG - chr5_2:72033065-72033084 Msa0786500:intron 45.0%
TTTGATCATCAGCGAGTCGA+TGG + chr5_2:72033536-72033555 None:intergenic 45.0%
GAAGCTCTATCGAGTCTTCA+AGG - chr5_2:72033617-72033636 Msa0786500:intron 45.0%
AACAGCAACGCCTACCAAAT+AGG + chr5_2:72033744-72033763 None:intergenic 45.0%
!! AAATAAAAAAAATAAAGAAA+AGG - chr5_2:72028993-72029012 Msa0786500:intron 5.0%
ACACAGCAGCAGTCCAAAGA+AGG - chr5_2:72026490-72026509 Msa0786500:three_prime_UTR 50.0%
ACCTGAAACTGCCAACACTG+TGG - chr5_2:72026961-72026980 Msa0786500:CDS 50.0%
!! TCCACAGTGTTGGCAGTTTC+AGG + chr5_2:72026965-72026984 None:intergenic 50.0%
TCTTCAGTGATCCCTTCCGT+TGG - chr5_2:72027178-72027197 Msa0786500:CDS 50.0%
CAACAAGTTTGCCCAACGGT+TGG - chr5_2:72027291-72027310 Msa0786500:CDS 50.0%
TTTGGATGGAGGCAAGCAGA+TGG - chr5_2:72027494-72027513 Msa0786500:intron 50.0%
AGAAGGGTCCAACTAACGAG+TGG - chr5_2:72028071-72028090 Msa0786500:intron 50.0%
! CGAGTGGATCGTCTTCCTTT+TGG - chr5_2:72028087-72028106 Msa0786500:intron 50.0%
TGTAAGCCGACCTCACTTAG+TGG - chr5_2:72028235-72028254 Msa0786500:intron 50.0%
GTAAGCCGACCTCACTTAGT+GGG - chr5_2:72028236-72028255 Msa0786500:intron 50.0%
GAACTCTTTCCAAGTTCCCG+AGG - chr5_2:72028340-72028359 Msa0786500:intron 50.0%
! AATGCTAAAGGGTGTGCCCT+CGG + chr5_2:72028360-72028379 None:intergenic 50.0%
CCCTTCCAATCTGTTCTGCA+AGG + chr5_2:72029179-72029198 None:intergenic 50.0%
TTGCAACACTCCCCTAAAGC+TGG - chr5_2:72029465-72029484 Msa0786500:intron 50.0%
ACTCCCCTAAAGCTGGTGAA+TGG - chr5_2:72029472-72029491 Msa0786500:intron 50.0%
GGCATCCATTCACCAGCTTT+AGG + chr5_2:72029480-72029499 None:intergenic 50.0%
GCATGCAACCCAGTACAACA+TGG + chr5_2:72029629-72029648 None:intergenic 50.0%
GTTGGTCGATGGTTACCTCA+GGG + chr5_2:72029821-72029840 None:intergenic 50.0%
TGTTGGTCGATGGTTACCTC+AGG + chr5_2:72029822-72029841 None:intergenic 50.0%
CTGGGTCAATTGTTGGTCGA+TGG + chr5_2:72029832-72029851 None:intergenic 50.0%
!! TAGGGTGCTGGGTCAATTGT+TGG + chr5_2:72029839-72029858 None:intergenic 50.0%
ACAATTGACCCAGCACCCTA+AGG - chr5_2:72029839-72029858 Msa0786500:intron 50.0%
GATGGTTTACCTTAGGGTGC+TGG + chr5_2:72029851-72029870 None:intergenic 50.0%
TTGAAGTCTGGTCCTGGAAG+AGG + chr5_2:72029950-72029969 None:intergenic 50.0%
GAAGAGCCCACAAGTAGAGA+AGG + chr5_2:72030102-72030121 None:intergenic 50.0%
GAGGTTGCCTACTCCAAACA+AGG + chr5_2:72030248-72030267 None:intergenic 50.0%
ACTCCAATACCACAAGCGCT+GGG + chr5_2:72030651-72030670 None:intergenic 50.0%
TACTCCAATACCACAAGCGC+TGG + chr5_2:72030652-72030671 None:intergenic 50.0%
! AGCGCTTGTGGTATTGGAGT+AGG - chr5_2:72030651-72030670 Msa0786500:intron 50.0%
! GAGGGTTTCATTGGCCTACT+AGG + chr5_2:72030698-72030717 None:intergenic 50.0%
! ATTAACTGTTGGCCTGGCAC+AGG + chr5_2:72030999-72031018 None:intergenic 50.0%
ACGGAGATTAACTGTTGGCC+TGG + chr5_2:72031005-72031024 None:intergenic 50.0%
CCCCATCTCTTCTTGAGTAG+TGG + chr5_2:72031628-72031647 None:intergenic 50.0%
GAAGCCTCATTGTGAACTGG+AGG - chr5_2:72031797-72031816 Msa0786500:intron 50.0%
AGAATATGTGCACAGTGGCC+AGG - chr5_2:72032584-72032603 Msa0786500:intron 50.0%
CTTGTCCTTGGACAGAATGC+TGG + chr5_2:72033017-72033036 None:intergenic 50.0%
GAAACTGGATCCCAACCTCT+CGG - chr5_2:72033041-72033060 Msa0786500:intron 50.0%
AGAAGTTGCTCCGAGAGGTT+GGG + chr5_2:72033054-72033073 None:intergenic 50.0%
AAGAAGTTGCTCCGAGAGGT+TGG + chr5_2:72033055-72033074 None:intergenic 50.0%
GACTGCTGCTGTGTGTGGAT+CGG + chr5_2:72026484-72026503 None:intergenic 55.0%
CTTTGGACTGCTGCTGTGTG+TGG + chr5_2:72026489-72026508 None:intergenic 55.0%
ATCACAGCCTAGATGGGAGG+AGG - chr5_2:72026756-72026775 Msa0786500:CDS 55.0%
TCCAAAAGGGGCCGTTGTGA+TGG - chr5_2:72027238-72027257 Msa0786500:CDS 55.0%
CCAAAAGGGGCCGTTGTGAT+GGG - chr5_2:72027239-72027258 Msa0786500:CDS 55.0%
! ATGCTAAAGGGTGTGCCCTC+GGG + chr5_2:72028359-72028378 None:intergenic 55.0%
GATCCCAGCGCTTGTGGTAT+TGG - chr5_2:72030645-72030664 Msa0786500:intron 55.0%
AATTCCACTAGGCCACCCCT+TGG + chr5_2:72031463-72031482 None:intergenic 55.0%
!! TTTTGGAAGTGGAGCGTGGG+CGG - chr5_2:72031491-72031510 Msa0786500:intron 55.0%
CCTGAAGAAGTTGCTCCGAG+AGG + chr5_2:72033059-72033078 None:intergenic 55.0%
CCTCTCGGAGCAACTTCTTC+AGG - chr5_2:72033056-72033075 Msa0786500:intron 55.0%
TTGGTGAGAGGAAAACGCGC+TGG + chr5_2:72033187-72033206 None:intergenic 55.0%
TGCTGCTGTGTGTGGATCGG+CGG + chr5_2:72026481-72026500 None:intergenic 60.0%
ACAGCCTAGATGGGAGGAGG+AGG - chr5_2:72026759-72026778 Msa0786500:CDS 60.0%
GCTACCTCCTCCTCCCATCT+AGG + chr5_2:72026766-72026785 None:intergenic 60.0%
CGGCGAAGGATCCACAGTGT+TGG + chr5_2:72026975-72026994 None:intergenic 60.0%
! CCCATCACAACGGCCCCTTT+TGG + chr5_2:72027242-72027261 None:intergenic 60.0%
CTTTCCAAGGGGTGGCCTAG+TGG - chr5_2:72031456-72031475 Msa0786500:intron 60.0%
TTTGGAAGTGGAGCGTGGGC+GGG - chr5_2:72031492-72031511 Msa0786500:intron 60.0%
TGTGTGTGGATCGGCGGCGA+CGG + chr5_2:72026475-72026494 None:intergenic 65.0%
AGGGTGTGCCCTCGGGAACT+TGG + chr5_2:72028352-72028371 None:intergenic 65.0%
!! CACAAGCGCTGGGATCGAGC+TGG + chr5_2:72030641-72030660 None:intergenic 65.0%
CAGCTCGATCCCAGCGCTTG+TGG - chr5_2:72030639-72030658 Msa0786500:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 72026446 72033773 72026446 ID=Msa0786500;Name=Msa0786500
chr5_2 mRNA 72026446 72033773 72026446 ID=Msa0786500-mRNA-1;Parent=Msa0786500;Name=Msa0786500-mRNA-1;_AED=0.12;_eAED=0.12;_QI=71|0.53|0.35|1|0.92|0.85|14|117|741
chr5_2 exon 72026446 72027486 72026446 ID=Msa0786500-mRNA-1:exon:21839;Parent=Msa0786500-mRNA-1
chr5_2 exon 72027614 72027724 72027614 ID=Msa0786500-mRNA-1:exon:21838;Parent=Msa0786500-mRNA-1
chr5_2 exon 72027804 72027906 72027804 ID=Msa0786500-mRNA-1:exon:21837;Parent=Msa0786500-mRNA-1
chr5_2 exon 72028371 72028430 72028371 ID=Msa0786500-mRNA-1:exon:21836;Parent=Msa0786500-mRNA-1
chr5_2 exon 72028521 72028609 72028521 ID=Msa0786500-mRNA-1:exon:21835;Parent=Msa0786500-mRNA-1
chr5_2 exon 72028706 72028780 72028706 ID=Msa0786500-mRNA-1:exon:21834;Parent=Msa0786500-mRNA-1
chr5_2 exon 72029483 72029608 72029483 ID=Msa0786500-mRNA-1:exon:21833;Parent=Msa0786500-mRNA-1
chr5_2 exon 72030941 72031060 72030941 ID=Msa0786500-mRNA-1:exon:21832;Parent=Msa0786500-mRNA-1
chr5_2 exon 72031175 72031255 72031175 ID=Msa0786500-mRNA-1:exon:21831;Parent=Msa0786500-mRNA-1
chr5_2 exon 72031583 72031746 72031583 ID=Msa0786500-mRNA-1:exon:21830;Parent=Msa0786500-mRNA-1
chr5_2 exon 72032839 72032996 72032839 ID=Msa0786500-mRNA-1:exon:21829;Parent=Msa0786500-mRNA-1
chr5_2 exon 72033136 72033268 72033136 ID=Msa0786500-mRNA-1:exon:21828;Parent=Msa0786500-mRNA-1
chr5_2 exon 72033370 72033456 72033370 ID=Msa0786500-mRNA-1:exon:21827;Parent=Msa0786500-mRNA-1
chr5_2 exon 72033708 72033773 72033708 ID=Msa0786500-mRNA-1:exon:21826;Parent=Msa0786500-mRNA-1
chr5_2 five_prime_UTR 72033708 72033773 72033708 ID=Msa0786500-mRNA-1:five_prime_utr;Parent=Msa0786500-mRNA-1
chr5_2 five_prime_UTR 72033452 72033456 72033452 ID=Msa0786500-mRNA-1:five_prime_utr;Parent=Msa0786500-mRNA-1
chr5_2 CDS 72033370 72033451 72033370 ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2 CDS 72033136 72033268 72033136 ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2 CDS 72032839 72032996 72032839 ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2 CDS 72031583 72031746 72031583 ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2 CDS 72031175 72031255 72031175 ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2 CDS 72030941 72031060 72030941 ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2 CDS 72029483 72029608 72029483 ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2 CDS 72028706 72028780 72028706 ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2 CDS 72028521 72028609 72028521 ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2 CDS 72028371 72028430 72028371 ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2 CDS 72027804 72027906 72027804 ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2 CDS 72027614 72027724 72027614 ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2 CDS 72026563 72027486 72026563 ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2 three_prime_UTR 72026446 72026562 72026446 ID=Msa0786500-mRNA-1:three_prime_utr;Parent=Msa0786500-mRNA-1
Gene Sequence

>Msa0786500

ATGGGAGGAGGAGGTAGCGAAAATGAAAGTAGAATTTCGGGGATAGGTCCGTTATATAAGAAAAGAAAAACAACAAATTCAGTTGTTGCTCAACCTGAAACTGCCAACACTGTGGATCCTTCGCCGTTTCAATTCAAATGGACAATTGACAGATTTTCAAAGATGAATGAGAAACATCTCTATTCAGATGTATTTGAAGTTGGGGGTTATAAATGGCGTGTACTAACTTATCCAAAAGGGGCCGTTGTGATGGGCTATTTGTCCTTGTATTTGGAACTAGATTCAACAAGTTTGCCCAACGGTTGGAGTGTTAATCCACAAATTAGCATGACGATAGTTAATCAAATCACGAATAAGAACTCAGTAAGAAGAGATATGCAGCTCCAATTCAAAGAAGGACTAAGTAGTTGGGGTTTTGCGTCCTTCATATCTCAAGGTGAATTGTATGATCATTATAAAGGGTTTCTTGTGAATGACACTCTTGTAGTTGAAGTAACTTGCAGTGTGGCCGAGAAAGACATTGCAGAGCATTTAACGAAGAGATTGAAGAGAGAACAGGAAGACAAAAATAAAAAAAATAAAGAAAAGGCAGAGGCTCACCTCTACAGTATCATAAAGGTAGTACGAGACGAAGACCTTGCAGAACAGATTGGAAGGGATATATATTTTGATCTTGTAGACCCTGACAAAGTGAGGAGTTTTCATGTTTCCAAGAAGATGACTATTAAAGATTTCAAGAAAATGCTTGCTAAAGAGTTTGGTATACCAGCTCGATCCCAGCGCTTGTGGTATTGGAGTAGGCGTCAAAACCATACATATCGTCCTAGTAGGCCAATGAAACCCTCTTTTGAAGCAGCAGCACATGTTGGACAATTTGTAAACTTTCCAAGGGGTGGCCTAGTGGAATTAGTATTGTTTTTGGAAGTGGAGCGTGGGCGGGATTTACGCCCCATTCCACTACTCAAGAAGAGATGGGGTGATATATTACTTTTTTTCAAGTTATACGATCCTGAAAAAGAGGAGTTACGTTATGTTGGAAGCCTCATTGTGAACTGGAGGAATGAAAAGCCATCAGAAATCTTAGCAAGTGTTCGTGAGTTTATTATGCGTATTTGTGTGCAGGAAATCGCGTTTGAACCAAATGTTATTTGTGAGCATGTCGACAAGAAGTTAACATTTGAAGAAAACAAGTTAGAAAATGGTGGTATTATATGCTTTCAGAAAGTTTCTGCAATGGATAATGTGAAACATATCCGACATCCTGATGTGCCTTCATACTTAGAATATGTGCACAGTGGCCAGATTCCTCTATCTCCATCAGACAAAGAATCCAAGGATGAAGAATCAGTGGAGGAGCAAAATGAAAACATTATAGACCAACAGACGAATGTTGACAAAAACATTGAAGCTCAACAGTCAAAAGAGGACATAGAGACCACTTATGATGATGAAGGCACCTGGAAATCCAACACTTCAAAAGTAGTCAGTGTAGACTTGGAAGAAATTGATGCTATGATAGATGAAGACGTCATTGCTGCAATCGACAGAGTTTTATCAGAAGGGATTAATATTTCCTTAAAATCCCAGCATTCTGTCCAAGGACAAGTTTCGAAACTGGATCCCAACCTCTCGGAGCAACTTCTTCAGGAACTGAGGGATATCACCTTTAAAGAGGACGTGATTGAAAAATTTAAAGAAGGTCTCACTCCTGAAGTTAAGTTCAAGGCAGTCATAGACAAAATTAACGCTAATGCCAGCGCGTTTTCCTCTCACCAATTAGAACAAGTCGGTGTTGTTGTTAACCTTCTCAACAACATTGTGAGGATGCTTGGGAAACTACATTTTTTGAAAAAAGAGCTAGACTCAGCTAAGAAGAGCACCGATCAAGATAATGAAGCATTGAAGGAGAAAAGACAGAAAATATTGACCTTAAAGACTTCCGTCACAGATCAACAAACACAGCTCAACTCTCTTGATGTTGAGATTGCTGATCTTGAAGCCAAACTCAAAAAACGACAAGTTGACAGGGCCAAAATTGCTGAGATTCAAGATAAAAAGAATGACAAAATCACATCTTTGAACAAAGAAGTTAAATCAATTTTCCATCGACTCGCTGATGATCAAATCAAGTTAAAAAGTGTTGAAGATCAAATTCCAAAGGCTCAAACTGAATTGGAAAGTCACGAGAAGCTCTATCGAGTCTTCAAGGCTATCCCTCCATTTTGA
Protein sequence

>Msa0786500

MGGGGSENESRISGIGPLYKKRKTTNSVVAQPETANTVDPSPFQFKWTIDRFSKMNEKHLYSDVFEVGGYKWRVLTYPKGAVVMGYLSLYLELDSTSLPNGWSVNPQISMTIVNQITNKNSVRRDMQLQFKEGLSSWGFASFISQGELYDHYKGFLVNDTLVVEVTCSVAEKDIAEHLTKRLKREQEDKNKKNKEKAEAHLYSIIKVVRDEDLAEQIGRDIYFDLVDPDKVRSFHVSKKMTIKDFKKMLAKEFGIPARSQRLWYWSRRQNHTYRPSRPMKPSFEAAAHVGQFVNFPRGGLVELVLFLEVERGRDLRPIPLLKKRWGDILLFFKLYDPEKEELRYVGSLIVNWRNEKPSEILASVREFIMRICVQEIAFEPNVICEHVDKKLTFEENKLENGGIICFQKVSAMDNVKHIRHPDVPSYLEYVHSGQIPLSPSDKESKDEESVEEQNENIIDQQTNVDKNIEAQQSKEDIETTYDDEGTWKSNTSKVVSVDLEEIDAMIDEDVIAAIDRVLSEGINISLKSQHSVQGQVSKLDPNLSEQLLQELRDITFKEDVIEKFKEGLTPEVKFKAVIDKINANASAFSSHQLEQVGVVVNLLNNIVRMLGKLHFLKKELDSAKKSTDQDNEALKEKRQKILTLKTSVTDQQTQLNSLDVEIADLEAKLKKRQVDRAKIAEIQDKKNDKITSLNKEVKSIFHRLADDQIKLKSVEDQIPKAQTELESHEKLYRVFKAIPPF*