AlfalfaGEDB | Msa0786500

M. sativa cultivar zhongmu-4 / Msa0786500

KEGG: K11838
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00917.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786500	AET00387.2	58.048	789	259	11	21	741	8	792	0.0	820

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786500	sp\|Q9FPT1\|UBP12_ARATH	50.847	295	134	6	165	452	530	820	5.77e-72	258
Msa0786500	sp\|Q9FPT1\|UBP12_ARATH	42.553	188	96	5	29	208	34	217	6.12e-35	146

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786500	G7KD59	58.048	789	259	11	21	741	8	792	0.0	820

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000190	Msa0786500	0.810733	9.953044e-51	-8.615850e-47
Msa0001780	Msa0786500	0.809506	1.829246e-50	-8.615850e-47
Msa0008670	Msa0786500	0.802997	4.300812e-49	-8.615850e-47
Msa0017510	Msa0786500	0.874003	9.484254e-68	-8.615850e-47
Msa0020430	Msa0786500	0.815841	7.518924e-52	-8.615850e-47
Msa0028640	Msa0786500	0.825946	3.551040e-54	-8.615850e-47
Msa0075220	Msa0786500	0.816863	4.441587e-52	-8.615850e-47
Msa0076250	Msa0786500	0.807860	4.112274e-50	-8.615850e-47
Msa0110970	Msa0786500	0.830558	2.744705e-55	-8.615850e-47
Msa0120400	Msa0786500	0.810112	1.354917e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786500	MtrunA17_Chr5g0442971	56.454	767	209	15	19	714	16	728	0.0	744
Msa0786500	MtrunA17_Chr5g0443151	57.066	559	175	7	245	741	18	573	0.0	572
Msa0786500	MtrunA17_Chr5g0443194	55.309	405	165	7	40	431	15	416	2.15e-131	398
Msa0786500	MtrunA17_Chr5g0443181	47.794	408	148	7	84	480	1	354	7.93e-109	335
Msa0786500	MtrunA17_Chr5g0443141	53.314	347	128	4	397	741	2	316	2.11e-92	291
Msa0786500	MtrunA17_Chr5g0439971	61.151	278	99	4	165	435	534	809	2.09e-85	292
Msa0786500	MtrunA17_Chr5g0439971	51.613	186	81	5	28	208	41	222	2.15e-45	175
Msa0786500	MtrunA17_Chr5g0443161	61.905	231	83	3	21	246	8	238	8.85e-84	266
Msa0786500	MtrunA17_Chr3g0119031	55.593	295	121	5	165	451	529	821	1.35e-80	279
Msa0786500	MtrunA17_Chr3g0119031	49.468	188	84	5	28	208	34	217	7.29e-43	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786500	AT5G06600.3	50.847	295	134	6	165	452	530	820	2.29e-73	257
Msa0786500	AT5G06600.3	42.553	188	96	5	29	208	34	217	6.39e-36	146
Msa0786500	AT5G06600.2	50.847	295	134	6	165	452	529	819	5.72e-73	258
Msa0786500	AT5G06600.2	42.553	188	96	5	29	208	33	216	6.11e-36	146
Msa0786500	AT5G06600.1	50.847	295	134	6	165	452	530	820	5.87e-73	258
Msa0786500	AT5G06600.1	42.553	188	96	5	29	208	34	217	6.22e-36	146
Msa0786500	AT3G11910.3	50.000	278	129	5	165	435	528	802	1.23e-70	251
Msa0786500	AT3G11910.3	38.144	194	115	4	16	208	27	216	2.29e-34	141
Msa0786500	AT3G11910.1	50.000	278	129	5	165	435	528	802	1.23e-70	251
Msa0786500	AT3G11910.1	38.144	194	115	4	16	208	27	216	2.29e-34	141

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Find 162 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATACTAATTCCACT+AGG	0.684563	5_2:+72028726	None:intergenic
AAAAGTAGTCAGTGTAGACT+TGG	0.523638	5_2:-72027291	Msa0786500:CDS
AAAATGAAAGTAGAATTTCG+GGG	0.772340	5_2:-72033410	Msa0786500:CDS
AAAATGCTTGCTAAAGAGTT+TGG	0.349882	5_2:-72029586	Msa0786500:CDS
AAAGAAGGACTAAGTAGTTG+GGG	0.551683	5_2:-72031707	Msa0786500:CDS
AAATACATAAATCAAAATGG+AGG	0.626859	5_2:+72026552	None:intergenic
AAATCCCAGCATTCTGTCCA+AGG	0.547345	5_2:-72027188	Msa0786500:CDS
AACAACATTGTGAGGATGCT+TGG	0.373950	5_2:-72026957	Msa0786500:CDS
AACAGCAACGCCTACCAAAT+AGG	0.401629	5_2:+72026456	None:intergenic
AACCTTGCTAAGATTTCTGA+TGG	0.532238	5_2:+72028368	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATTCATTCATTCATGTGT+TGG	-	chr5_2:72026551-72026570	Msa0786500:exon	30.0%
GAAATTAAGCCATGTTTGTT+TGG	+	chr5_2:72026662-72026681	None:intergenic	30.0%
AACATGGCTTAATTTCTTCT+TGG	-	chr5_2:72026666-72026685	Msa0786500:CDS	30.0%
TAGATCCAAGAATTGATTGA+GGG	+	chr5_2:72027105-72027124	None:intergenic	30.0%
TTAGATCCAAGAATTGATTG+AGG	+	chr5_2:72027106-72027125	None:intergenic	30.0%
AAAAAAACAAACCAACGGAA+GGG	+	chr5_2:72027192-72027211	None:intergenic	30.0%
TAAAAAAACAAACCAACGGA+AGG	+	chr5_2:72027193-72027212	None:intergenic	30.0%
GTGTACTAACTTATCCAAAA+GGG	-	chr5_2:72027225-72027244	Msa0786500:CDS	30.0%
TGTACTAACTTATCCAAAAG+GGG	-	chr5_2:72027226-72027245	Msa0786500:CDS	30.0%
AATAAGAACTCAGTAAGAAG+AGG	-	chr5_2:72027359-72027378	Msa0786500:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	72026446	72033773	72026446	ID=Msa0786500;Name=Msa0786500
chr5_2	mRNA	72026446	72033773	72026446	ID=Msa0786500-mRNA-1;Parent=Msa0786500;Name=Msa0786500-mRNA-1;_AED=0.12;_eAED=0.12;_QI=71\|0.53\|0.35\|1\|0.92\|0.85\|14\|117\|741
chr5_2	exon	72026446	72027486	72026446	ID=Msa0786500-mRNA-1:exon:21839;Parent=Msa0786500-mRNA-1
chr5_2	exon	72027614	72027724	72027614	ID=Msa0786500-mRNA-1:exon:21838;Parent=Msa0786500-mRNA-1
chr5_2	exon	72027804	72027906	72027804	ID=Msa0786500-mRNA-1:exon:21837;Parent=Msa0786500-mRNA-1
chr5_2	exon	72028371	72028430	72028371	ID=Msa0786500-mRNA-1:exon:21836;Parent=Msa0786500-mRNA-1
chr5_2	exon	72028521	72028609	72028521	ID=Msa0786500-mRNA-1:exon:21835;Parent=Msa0786500-mRNA-1
chr5_2	exon	72028706	72028780	72028706	ID=Msa0786500-mRNA-1:exon:21834;Parent=Msa0786500-mRNA-1
chr5_2	exon	72029483	72029608	72029483	ID=Msa0786500-mRNA-1:exon:21833;Parent=Msa0786500-mRNA-1
chr5_2	exon	72030941	72031060	72030941	ID=Msa0786500-mRNA-1:exon:21832;Parent=Msa0786500-mRNA-1
chr5_2	exon	72031175	72031255	72031175	ID=Msa0786500-mRNA-1:exon:21831;Parent=Msa0786500-mRNA-1
chr5_2	exon	72031583	72031746	72031583	ID=Msa0786500-mRNA-1:exon:21830;Parent=Msa0786500-mRNA-1
chr5_2	exon	72032839	72032996	72032839	ID=Msa0786500-mRNA-1:exon:21829;Parent=Msa0786500-mRNA-1
chr5_2	exon	72033136	72033268	72033136	ID=Msa0786500-mRNA-1:exon:21828;Parent=Msa0786500-mRNA-1
chr5_2	exon	72033370	72033456	72033370	ID=Msa0786500-mRNA-1:exon:21827;Parent=Msa0786500-mRNA-1
chr5_2	exon	72033708	72033773	72033708	ID=Msa0786500-mRNA-1:exon:21826;Parent=Msa0786500-mRNA-1
chr5_2	five_prime_UTR	72033708	72033773	72033708	ID=Msa0786500-mRNA-1:five_prime_utr;Parent=Msa0786500-mRNA-1
chr5_2	five_prime_UTR	72033452	72033456	72033452	ID=Msa0786500-mRNA-1:five_prime_utr;Parent=Msa0786500-mRNA-1
chr5_2	CDS	72033370	72033451	72033370	ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2	CDS	72033136	72033268	72033136	ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2	CDS	72032839	72032996	72032839	ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2	CDS	72031583	72031746	72031583	ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2	CDS	72031175	72031255	72031175	ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2	CDS	72030941	72031060	72030941	ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2	CDS	72029483	72029608	72029483	ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2	CDS	72028706	72028780	72028706	ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2	CDS	72028521	72028609	72028521	ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2	CDS	72028371	72028430	72028371	ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2	CDS	72027804	72027906	72027804	ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2	CDS	72027614	72027724	72027614	ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2	CDS	72026563	72027486	72026563	ID=Msa0786500-mRNA-1:cds;Parent=Msa0786500-mRNA-1
chr5_2	three_prime_UTR	72026446	72026562	72026446	ID=Msa0786500-mRNA-1:three_prime_utr;Parent=Msa0786500-mRNA-1

Gene Sequence

>Msa0786500

ATGGGAGGAGGAGGTAGCGAAAATGAAAGTAGAATTTCGGGGATAGGTCCGTTATATAAGAAAAGAAAAACAACAAATTCAGTTGTTGCTCAACCTGAAACTGCCAACACTGTGGATCCTTCGCCGTTTCAATTCAAATGGACAATTGACAGATTTTCAAAGATGAATGAGAAACATCTCTATTCAGATGTATTTGAAGTTGGGGGTTATAAATGGCGTGTACTAACTTATCCAAAAGGGGCCGTTGTGATGGGCTATTTGTCCTTGTATTTGGAACTAGATTCAACAAGTTTGCCCAACGGTTGGAGTGTTAATCCACAAATTAGCATGACGATAGTTAATCAAATCACGAATAAGAACTCAGTAAGAAGAGATATGCAGCTCCAATTCAAAGAAGGACTAAGTAGTTGGGGTTTTGCGTCCTTCATATCTCAAGGTGAATTGTATGATCATTATAAAGGGTTTCTTGTGAATGACACTCTTGTAGTTGAAGTAACTTGCAGTGTGGCCGAGAAAGACATTGCAGAGCATTTAACGAAGAGATTGAAGAGAGAACAGGAAGACAAAAATAAAAAAAATAAAGAAAAGGCAGAGGCTCACCTCTACAGTATCATAAAGGTAGTACGAGACGAAGACCTTGCAGAACAGATTGGAAGGGATATATATTTTGATCTTGTAGACCCTGACAAAGTGAGGAGTTTTCATGTTTCCAAGAAGATGACTATTAAAGATTTCAAGAAAATGCTTGCTAAAGAGTTTGGTATACCAGCTCGATCCCAGCGCTTGTGGTATTGGAGTAGGCGTCAAAACCATACATATCGTCCTAGTAGGCCAATGAAACCCTCTTTTGAAGCAGCAGCACATGTTGGACAATTTGTAAACTTTCCAAGGGGTGGCCTAGTGGAATTAGTATTGTTTTTGGAAGTGGAGCGTGGGCGGGATTTACGCCCCATTCCACTACTCAAGAAGAGATGGGGTGATATATTACTTTTTTTCAAGTTATACGATCCTGAAAAAGAGGAGTTACGTTATGTTGGAAGCCTCATTGTGAACTGGAGGAATGAAAAGCCATCAGAAATCTTAGCAAGTGTTCGTGAGTTTATTATGCGTATTTGTGTGCAGGAAATCGCGTTTGAACCAAATGTTATTTGTGAGCATGTCGACAAGAAGTTAACATTTGAAGAAAACAAGTTAGAAAATGGTGGTATTATATGCTTTCAGAAAGTTTCTGCAATGGATAATGTGAAACATATCCGACATCCTGATGTGCCTTCATACTTAGAATATGTGCACAGTGGCCAGATTCCTCTATCTCCATCAGACAAAGAATCCAAGGATGAAGAATCAGTGGAGGAGCAAAATGAAAACATTATAGACCAACAGACGAATGTTGACAAAAACATTGAAGCTCAACAGTCAAAAGAGGACATAGAGACCACTTATGATGATGAAGGCACCTGGAAATCCAACACTTCAAAAGTAGTCAGTGTAGACTTGGAAGAAATTGATGCTATGATAGATGAAGACGTCATTGCTGCAATCGACAGAGTTTTATCAGAAGGGATTAATATTTCCTTAAAATCCCAGCATTCTGTCCAAGGACAAGTTTCGAAACTGGATCCCAACCTCTCGGAGCAACTTCTTCAGGAACTGAGGGATATCACCTTTAAAGAGGACGTGATTGAAAAATTTAAAGAAGGTCTCACTCCTGAAGTTAAGTTCAAGGCAGTCATAGACAAAATTAACGCTAATGCCAGCGCGTTTTCCTCTCACCAATTAGAACAAGTCGGTGTTGTTGTTAACCTTCTCAACAACATTGTGAGGATGCTTGGGAAACTACATTTTTTGAAAAAAGAGCTAGACTCAGCTAAGAAGAGCACCGATCAAGATAATGAAGCATTGAAGGAGAAAAGACAGAAAATATTGACCTTAAAGACTTCCGTCACAGATCAACAAACACAGCTCAACTCTCTTGATGTTGAGATTGCTGATCTTGAAGCCAAACTCAAAAAACGACAAGTTGACAGGGCCAAAATTGCTGAGATTCAAGATAAAAAGAATGACAAAATCACATCTTTGAACAAAGAAGTTAAATCAATTTTCCATCGACTCGCTGATGATCAAATCAAGTTAAAAAGTGTTGAAGATCAAATTCCAAAGGCTCAAACTGAATTGGAAAGTCACGAGAAGCTCTATCGAGTCTTCAAGGCTATCCCTCCATTTTGA

Protein sequence

>Msa0786500

MGGGGSENESRISGIGPLYKKRKTTNSVVAQPETANTVDPSPFQFKWTIDRFSKMNEKHLYSDVFEVGGYKWRVLTYPKGAVVMGYLSLYLELDSTSLPNGWSVNPQISMTIVNQITNKNSVRRDMQLQFKEGLSSWGFASFISQGELYDHYKGFLVNDTLVVEVTCSVAEKDIAEHLTKRLKREQEDKNKKNKEKAEAHLYSIIKVVRDEDLAEQIGRDIYFDLVDPDKVRSFHVSKKMTIKDFKKMLAKEFGIPARSQRLWYWSRRQNHTYRPSRPMKPSFEAAAHVGQFVNFPRGGLVELVLFLEVERGRDLRPIPLLKKRWGDILLFFKLYDPEKEELRYVGSLIVNWRNEKPSEILASVREFIMRICVQEIAFEPNVICEHVDKKLTFEENKLENGGIICFQKVSAMDNVKHIRHPDVPSYLEYVHSGQIPLSPSDKESKDEESVEEQNENIIDQQTNVDKNIEAQQSKEDIETTYDDEGTWKSNTSKVVSVDLEEIDAMIDEDVIAAIDRVLSEGINISLKSQHSVQGQVSKLDPNLSEQLLQELRDITFKEDVIEKFKEGLTPEVKFKAVIDKINANASAFSSHQLEQVGVVVNLLNNIVRMLGKLHFLKKELDSAKKSTDQDNEALKEKRQKILTLKTSVTDQQTQLNSLDVEIADLEAKLKKRQVDRAKIAEIQDKKNDKITSLNKEVKSIFHRLADDQIKLKSVEDQIPKAQTELESHEKLYRVFKAIPPF*