Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0871260 | XP_024641790.2 | 57.778 | 675 | 238 | 10 | 10 | 657 | 16 | 670 | 0.0 | 709 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0871260 | A0A2Z6NZX3 | 60.434 | 599 | 212 | 5 | 24 | 617 | 48 | 626 | 0.0 | 705 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001780 | Msa0871260 | 0.842117 | 3.145552e-58 | -8.615850e-47 |
Msa0003700 | Msa0871260 | 0.805675 | 1.190498e-49 | -8.615850e-47 |
Msa0017510 | Msa0871260 | 0.834609 | 2.715135e-56 | -8.615850e-47 |
Msa0020930 | Msa0871260 | 0.806683 | 7.304231e-50 | -8.615850e-47 |
Msa0021510 | Msa0871260 | 0.804122 | 2.513432e-49 | -8.615850e-47 |
Msa0032430 | Msa0871260 | 0.826490 | 2.635794e-54 | -8.615850e-47 |
Msa0047070 | Msa0871260 | 0.812545 | 4.017637e-51 | -8.615850e-47 |
Msa0063890 | Msa0871260 | 0.804560 | 2.036951e-49 | -8.615850e-47 |
Msa0068680 | Msa0871260 | 0.801330 | 9.475505e-49 | -8.615850e-47 |
Msa0094120 | Msa0871260 | 0.803247 | 3.818450e-49 | -8.615850e-47 |
Msa0101440 | Msa0871260 | 0.805905 | 1.064898e-49 | -8.615850e-47 |
Msa0110970 | Msa0871260 | 0.819505 | 1.121195e-52 | -8.615850e-47 |
Msa0114060 | Msa0871260 | 0.827121 | 1.863019e-54 | -8.615850e-47 |
Msa0625720 | Msa0871260 | 0.808933 | 2.427352e-50 | -8.615850e-47 |
Msa0627450 | Msa0871260 | 0.806782 | 6.958288e-50 | -8.615850e-47 |
Msa0648880 | Msa0871260 | 0.817554 | 3.104406e-52 | -8.615850e-47 |
Msa0663240 | Msa0871260 | 0.814039 | 1.887067e-51 | -8.615850e-47 |
Msa0663390 | Msa0871260 | 0.820978 | 5.155217e-53 | -8.615850e-47 |
Msa0669320 | Msa0871260 | 0.810002 | 1.431539e-50 | -8.615850e-47 |
Msa0677410 | Msa0871260 | 0.813858 | 2.069072e-51 | -8.615850e-47 |
Msa0683510 | Msa0871260 | 0.800026 | 1.748418e-48 | -8.615850e-47 |
Msa0688480 | Msa0871260 | 0.816471 | 5.436108e-52 | -8.615850e-47 |
Msa0691380 | Msa0871260 | 0.819233 | 1.293108e-52 | -8.615850e-47 |
Msa0709400 | Msa0871260 | 0.803126 | 4.045499e-49 | -8.615850e-47 |
Msa0723990 | Msa0871260 | 0.810384 | 1.183918e-50 | -8.615850e-47 |
Msa0762970 | Msa0871260 | 0.803794 | 2.940336e-49 | -8.615850e-47 |
Msa0764570 | Msa0871260 | 0.825101 | 5.631258e-54 | -8.615850e-47 |
Msa0767300 | Msa0871260 | 0.810151 | 1.329157e-50 | -8.615850e-47 |
Msa0796530 | Msa0871260 | 0.833706 | 4.571647e-56 | -8.615850e-47 |
Msa0806790 | Msa0871260 | 0.811186 | 7.938703e-51 | -8.615850e-47 |
Msa0828560 | Msa0871260 | 0.823079 | 1.680229e-53 | -8.615850e-47 |
Msa0124060 | Msa0871260 | 0.816167 | 6.357204e-52 | -8.615850e-47 |
Msa0139060 | Msa0871260 | 0.800262 | 1.564954e-48 | -8.615850e-47 |
Msa0157290 | Msa0871260 | 0.835154 | 1.979658e-56 | -8.615850e-47 |
Msa0159930 | Msa0871260 | 0.820727 | 5.888221e-53 | -8.615850e-47 |
Msa0172070 | Msa0871260 | 0.824502 | 7.797239e-54 | -8.615850e-47 |
Msa0211150 | Msa0871260 | 0.809828 | 1.560490e-50 | -8.615850e-47 |
Msa0212990 | Msa0871260 | 0.830118 | 3.516510e-55 | -8.615850e-47 |
Msa0225740 | Msa0871260 | 0.808334 | 3.259179e-50 | -8.615850e-47 |
Msa0234600 | Msa0871260 | 0.806599 | 7.605441e-50 | -8.615850e-47 |
Msa0380210 | Msa0871260 | 0.823900 | 1.079537e-53 | -8.615850e-47 |
Msa0392510 | Msa0871260 | 0.806021 | 1.006968e-49 | -8.615850e-47 |
Msa0410650 | Msa0871260 | 0.804456 | 2.141800e-49 | -8.615850e-47 |
Msa0417880 | Msa0871260 | 0.812838 | 3.466552e-51 | -8.615850e-47 |
Msa0440750 | Msa0871260 | 0.817626 | 2.990681e-52 | -8.615850e-47 |
Msa0464380 | Msa0871260 | 0.804083 | 2.561007e-49 | -8.615850e-47 |
Msa0467490 | Msa0871260 | 0.809894 | 1.509766e-50 | -8.615850e-47 |
Msa0469030 | Msa0871260 | 0.831955 | 1.244404e-55 | -8.615850e-47 |
Msa0479170 | Msa0871260 | 0.814155 | 1.779165e-51 | -8.615850e-47 |
Msa0481530 | Msa0871260 | 0.804832 | 1.787271e-49 | -8.615850e-47 |
Msa0244860 | Msa0871260 | 0.810670 | 1.027248e-50 | -8.615850e-47 |
Msa0261340 | Msa0871260 | 0.811221 | 7.804504e-51 | -8.615850e-47 |
Msa0283450 | Msa0871260 | 0.813277 | 2.776752e-51 | -8.615850e-47 |
Msa0283520 | Msa0871260 | 0.801339 | 9.433089e-49 | -8.615850e-47 |
Msa0284410 | Msa0871260 | 0.803570 | 3.273550e-49 | -8.615850e-47 |
Msa0287650 | Msa0871260 | 0.815864 | 7.431341e-52 | -8.615850e-47 |
Msa0291540 | Msa0871260 | 0.801338 | 9.440580e-49 | -8.615850e-47 |
Msa0292120 | Msa0871260 | 0.829002 | 6.567986e-55 | -8.615850e-47 |
Msa0309770 | Msa0871260 | 0.806961 | 6.378913e-50 | -8.615850e-47 |
Msa0330340 | Msa0871260 | 0.823243 | 1.537936e-53 | -8.615850e-47 |
Msa0332000 | Msa0871260 | 0.806013 | 1.011023e-49 | -8.615850e-47 |
Msa0345970 | Msa0871260 | 0.811214 | 7.829610e-51 | -8.615850e-47 |
Msa0487420 | Msa0871260 | 0.808441 | 3.091850e-50 | -8.615850e-47 |
Msa0488560 | Msa0871260 | 0.801344 | 9.411001e-49 | -8.615850e-47 |
Msa0498060 | Msa0871260 | 0.808251 | 3.395373e-50 | -8.615850e-47 |
Msa0507680 | Msa0871260 | 0.814721 | 1.334017e-51 | -8.615850e-47 |
Msa0529890 | Msa0871260 | 0.808055 | 3.736770e-50 | -8.615850e-47 |
Msa0546680 | Msa0871260 | 0.800928 | 1.145125e-48 | -8.615850e-47 |
Msa0577500 | Msa0871260 | 0.814108 | 1.822422e-51 | -8.615850e-47 |
Msa0585300 | Msa0871260 | 0.814069 | 1.858425e-51 | -8.615850e-47 |
Msa0585560 | Msa0871260 | 0.815402 | 9.416993e-52 | -8.615850e-47 |
Msa0597330 | Msa0871260 | 0.804295 | 2.313156e-49 | -8.615850e-47 |
Msa0602390 | Msa0871260 | 0.800925 | 1.146267e-48 | -8.615850e-47 |
Msa0602460 | Msa0871260 | 0.801715 | 7.901003e-49 | -8.615850e-47 |
Msa0845400 | Msa0871260 | 0.800354 | 1.499340e-48 | -8.615850e-47 |
Msa0866270 | Msa0871260 | 0.804114 | 2.523513e-49 | -8.615850e-47 |
Msa0866520 | Msa0871260 | 0.803263 | 3.790108e-49 | -8.615850e-47 |
Msa0871260 | Msa0871270 | 0.807578 | 4.720426e-50 | -8.615850e-47 |
Msa0871260 | Msa0880140 | 0.833787 | 4.363876e-56 | -8.615850e-47 |
Msa0871260 | Msa0925250 | 0.802060 | 6.709970e-49 | -8.615850e-47 |
Msa0871260 | Msa0925290 | 0.811286 | 7.553801e-51 | -8.615850e-47 |
Msa0871260 | Msa0938210 | 0.858656 | 7.092772e-63 | -8.615850e-47 |
Msa0871260 | Msa0938220 | 0.813023 | 3.156551e-51 | -8.615850e-47 |
Msa0871260 | Msa0945110 | 0.801609 | 8.304390e-49 | -8.615850e-47 |
Msa0871260 | Msa0945970 | 0.825819 | 3.806595e-54 | -8.615850e-47 |
Msa0871260 | Msa0947660 | 0.829577 | 4.761798e-55 | -8.615850e-47 |
Msa0871260 | Msa0959360 | 0.819237 | 1.290840e-52 | -8.615850e-47 |
Msa0871260 | Msa0975330 | 0.828828 | 7.236743e-55 | -8.615850e-47 |
Msa0871260 | Msa1002000 | 0.830204 | 3.349857e-55 | -8.615850e-47 |
Msa0871260 | Msa1014540 | 0.803262 | 3.791988e-49 | -8.615850e-47 |
Msa0871260 | Msa1020670 | 0.812784 | 3.562358e-51 | -8.615850e-47 |
Msa0871260 | Msa1029250 | 0.815085 | 1.107668e-51 | -8.615850e-47 |
Msa0871260 | Msa1047870 | 0.830364 | 3.062145e-55 | -8.615850e-47 |
Msa0871260 | Msa1051830 | 0.802395 | 5.724969e-49 | -8.615850e-47 |
Msa0871260 | Msa1085200 | 0.804349 | 2.254701e-49 | -8.615850e-47 |
Msa0871260 | Msa1111130 | 0.814280 | 1.669400e-51 | -8.615850e-47 |
Msa0871260 | Msa1123380 | 0.811318 | 7.433109e-51 | -8.615850e-47 |
Msa0871260 | Msa1124960 | 0.802730 | 4.883043e-49 | -8.615850e-47 |
Msa0871260 | Msa1140210 | 0.817712 | 2.860185e-52 | -8.615850e-47 |
Msa0871260 | Msa1151910 | 0.805976 | 1.029148e-49 | -8.615850e-47 |
Msa0871260 | Msa1154710 | 0.814502 | 1.491423e-51 | -8.615850e-47 |
Msa0871260 | Msa1167340 | 0.811737 | 6.028281e-51 | -8.615850e-47 |
Msa0871260 | Msa1186060 | 0.818359 | 2.042141e-52 | -8.615850e-47 |
Msa0871260 | Msa1209460 | 0.803499 | 3.386561e-49 | -8.615850e-47 |
Msa0871260 | Msa1283860 | 0.810559 | 1.085483e-50 | -8.615850e-47 |
Msa0871260 | Msa1306840 | 0.814124 | 1.807243e-51 | -8.615850e-47 |
Msa0871260 | Msa1309030 | 0.802000 | 6.903315e-49 | -8.615850e-47 |
Msa0871260 | Msa1320410 | 0.817885 | 2.614571e-52 | -8.615850e-47 |
Msa0871260 | Msa1324080 | 0.812919 | 3.326926e-51 | -8.615850e-47 |
Msa0871260 | Msa1327680 | 0.805894 | 1.070884e-49 | -8.615850e-47 |
Msa0871260 | Msa1353980 | 0.816922 | 4.307243e-52 | -8.615850e-47 |
Msa0871260 | Msa1365060 | 0.812127 | 4.957617e-51 | -8.615850e-47 |
Msa0871260 | Msa1387870 | 0.808252 | 3.393481e-50 | -8.615850e-47 |
Msa0871260 | Msa1388970 | 0.802310 | 5.961929e-49 | -8.615850e-47 |
Msa0871260 | Msa1398340 | 0.805428 | 1.341272e-49 | -8.615850e-47 |
Msa0871260 | Msa1409870 | 0.816407 | 5.617728e-52 | -8.615850e-47 |
Msa0871260 | Msa1411020 | 0.811161 | 8.039182e-51 | -8.615850e-47 |
Msa0871260 | Msa1419370 | 0.800641 | 1.310343e-48 | -8.615850e-47 |
Msa0871260 | Msa1423350 | 0.801838 | 7.454997e-49 | -8.615850e-47 |
Msa0871260 | Msa1424290 | 0.812828 | 3.484211e-51 | -8.615850e-47 |
Msa0871260 | Msa1434350 | 0.810596 | 1.065675e-50 | -8.615850e-47 |
Msa0871260 | Msa1439320 | 0.809276 | 2.049991e-50 | -8.615850e-47 |
Msa0871260 | Msa1451160 | 0.804778 | 1.834947e-49 | -8.615850e-47 |
Msa0871260 | Msa1452240 | 0.803020 | 4.254015e-49 | -8.615850e-47 |
Msa0871260 | Msa1460020 | 0.803365 | 3.609395e-49 | -8.615850e-47 |
Msa0871260 | Msa1461300 | 0.802496 | 5.458030e-49 | -8.615850e-47 |
Msa0871260 | Msa1464810 | 0.805681 | 1.186879e-49 | -8.615850e-47 |
Msa0871260 | Msa1466540 | 0.822030 | 2.946433e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0871260 | MtrunA17_Chr6g0454051 | 54.873 | 667 | 256 | 9 | 24 | 659 | 15 | 667 | 0.0 | 682 |
Msa0871260 | MtrunA17_Chr6g0455641 | 59.606 | 609 | 209 | 8 | 76 | 656 | 8 | 607 | 0.0 | 677 |
Msa0871260 | MtrunA17_Chr6g0454041 | 55.403 | 657 | 253 | 10 | 25 | 652 | 62 | 707 | 0.0 | 676 |
Msa0871260 | MtrunA17_Chr6g0454061 | 57.307 | 609 | 230 | 7 | 76 | 656 | 3 | 609 | 0.0 | 655 |
Msa0871260 | MtrunA17_Chr2g0302451 | 37.292 | 480 | 297 | 3 | 141 | 617 | 300 | 778 | 1.14e-103 | 335 |
Msa0871260 | MtrunA17_Chr3g0112101 | 34.043 | 470 | 304 | 3 | 136 | 603 | 189 | 654 | 3.08e-77 | 262 |
Msa0871260 | MtrunA17_Chr3g0126261 | 30.435 | 506 | 327 | 8 | 147 | 634 | 19 | 517 | 6.15e-74 | 248 |
Msa0871260 | MtrunA17_Chr6g0476101 | 35.145 | 276 | 177 | 2 | 264 | 538 | 17 | 291 | 1.05e-48 | 172 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0871260 | AT3G17450.2 | 34.698 | 464 | 297 | 6 | 144 | 603 | 299 | 760 | 4.20e-94 | 310 |
Msa0871260 | AT3G17450.1 | 34.698 | 464 | 297 | 6 | 144 | 603 | 299 | 760 | 4.20e-94 | 310 |
Msa0871260 | AT4G15020.2 | 35.498 | 462 | 292 | 3 | 134 | 592 | 178 | 636 | 4.14e-88 | 291 |
Msa0871260 | AT4G15020.1 | 35.498 | 462 | 292 | 3 | 134 | 592 | 178 | 636 | 4.14e-88 | 291 |
Msa0871260 | AT3G22220.3 | 32.287 | 446 | 297 | 2 | 150 | 595 | 193 | 633 | 6.13e-78 | 264 |
Msa0871260 | AT3G22220.4 | 32.287 | 446 | 297 | 2 | 150 | 595 | 193 | 633 | 6.13e-78 | 264 |
Msa0871260 | AT3G22220.2 | 32.287 | 446 | 297 | 2 | 150 | 595 | 193 | 633 | 6.13e-78 | 264 |
Msa0871260 | AT3G22220.1 | 32.287 | 446 | 297 | 2 | 150 | 595 | 193 | 633 | 6.13e-78 | 264 |
Msa0871260 | AT1G79740.1 | 27.634 | 579 | 388 | 10 | 29 | 603 | 6 | 557 | 9.72e-72 | 245 |
Msa0871260 | AT1G79740.4 | 27.634 | 579 | 388 | 10 | 29 | 603 | 6 | 557 | 9.72e-72 | 245 |
Msa0871260 | AT1G79740.3 | 30.575 | 435 | 287 | 6 | 173 | 603 | 1 | 424 | 1.58e-65 | 224 |
Msa0871260 | AT1G79740.2 | 30.575 | 435 | 287 | 6 | 173 | 603 | 1 | 424 | 1.58e-65 | 224 |
Msa0871260 | AT3G13020.1 | 28.472 | 576 | 371 | 15 | 31 | 590 | 8 | 558 | 3.99e-62 | 218 |
Msa0871260 | AT3G13030.3 | 28.074 | 488 | 334 | 7 | 105 | 590 | 14 | 486 | 2.17e-57 | 203 |
Msa0871260 | AT3G13030.4 | 28.074 | 488 | 334 | 7 | 105 | 590 | 14 | 486 | 2.17e-57 | 203 |
Msa0871260 | AT3G13030.1 | 28.074 | 488 | 334 | 7 | 105 | 590 | 14 | 486 | 2.17e-57 | 203 |
Msa0871260 | AT3G13030.2 | 28.074 | 488 | 334 | 7 | 105 | 590 | 14 | 486 | 2.17e-57 | 203 |
Msa0871260 | AT5G33406.1 | 36.059 | 269 | 168 | 3 | 352 | 617 | 2 | 269 | 8.99e-49 | 179 |
Msa0871260 | AT3G13010.1 | 26.335 | 562 | 366 | 14 | 31 | 589 | 8 | 524 | 1.83e-46 | 173 |
Msa0871260 | AT3G13030.5 | 25.820 | 488 | 312 | 8 | 105 | 590 | 14 | 453 | 6.30e-46 | 171 |
Msa0871260 | AT1G43260.1 | 32.911 | 237 | 158 | 1 | 151 | 386 | 39 | 275 | 7.13e-41 | 151 |
Msa0871260 | AT1G36095.1 | 33.537 | 164 | 109 | 0 | 257 | 420 | 135 | 298 | 8.68e-24 | 102 |
Msa0871260 | AT5G31412.1 | 38.281 | 128 | 77 | 1 | 199 | 326 | 115 | 240 | 7.48e-21 | 96.3 |
Find 163 sgRNAs with CRISPR-Local
Find 396 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGTCAAATATTTACCTTTA+AGG | 0.051897 | 6_1:-6167445 | None:intergenic |
TTTAGTATGTTCCTCTTCTT+TGG | 0.151097 | 6_1:-6167560 | None:intergenic |
TCCAGGACTATAGTGATATT+TGG | 0.181611 | 6_1:-6168484 | None:intergenic |
AGCTTGACATGCAGTTCTTA+TGG | 0.234883 | 6_1:+6168741 | Msa0871260:CDS |
AGAGCTATATGGAAGATAAA+AGG | 0.235932 | 6_1:+6167506 | Msa0871260:CDS |
ACCAAATCAGTAACATTCTT+TGG | 0.278283 | 6_1:-6166942 | None:intergenic |
GCTGCATCTTACCTAACTTT+AGG | 0.286313 | 6_1:+6167980 | Msa0871260:CDS |
AGGAATAGATTTGGTGAAAC+AGG | 0.295450 | 6_1:+6167943 | Msa0871260:CDS |
TTGTATTGTCTGTCACAATT+TGG | 0.299212 | 6_1:-6167715 | None:intergenic |
CACTATAGTCCTGGATTTAG+AGG | 0.304361 | 6_1:+6168492 | Msa0871260:CDS |
GCACATTGGTGGGACTGTTT+TGG | 0.304418 | 6_1:+6168675 | Msa0871260:CDS |
ACAATCAGAGCTAACAAAAT+TGG | 0.305053 | 6_1:+6168704 | Msa0871260:CDS |
GCCAAAGAATGTTACTGATT+TGG | 0.305432 | 6_1:+6166941 | Msa0871260:CDS |
CTCAATCTTAGCTCTTTCTT+CGG | 0.308027 | 6_1:-6168571 | None:intergenic |
TGGTTTAGATTCTAAGATAA+TGG | 0.310688 | 6_1:+6166917 | Msa0871260:CDS |
AGCTTAAATCTTAATGATAA+TGG | 0.313708 | 6_1:+6168984 | Msa0871260:CDS |
CCGTAAGGGCGGCTGATAAA+TGG | 0.325903 | 6_1:+6168646 | Msa0871260:CDS |
TTGCTCCAATGCCTCATAAA+TGG | 0.327403 | 6_1:-6168218 | None:intergenic |
ATATGTCGAGGATGTGGTTT+TGG | 0.335955 | 6_1:+6168093 | Msa0871260:CDS |
GGTTTAGATTCTAAGATAAT+GGG | 0.339023 | 6_1:+6166918 | Msa0871260:CDS |
GCTTGACATGCAGTTCTTAT+GGG | 0.340385 | 6_1:+6168742 | Msa0871260:CDS |
CATTCCTCGTCTTCGCCAAC+TGG | 0.340904 | 6_1:-6168066 | None:intergenic |
TTACGTCACTTGGCTGGAAC+TGG | 0.345492 | 6_1:+6167053 | Msa0871260:CDS |
ATCATCTTAAAGAGTTTGTT+AGG | 0.355223 | 6_1:-6167653 | None:intergenic |
CCAGGACTATAGTGATATTT+GGG | 0.359234 | 6_1:-6168483 | None:intergenic |
GAATGTTACTGATTTGGTTA+TGG | 0.361350 | 6_1:+6166947 | Msa0871260:CDS |
TCAATCTTAGCTCTTTCTTC+GGG | 0.361654 | 6_1:-6168570 | None:intergenic |
GGCATTGGAGCAAGCTAAAC+AGG | 0.361924 | 6_1:+6168228 | Msa0871260:CDS |
TGTAATTGTCTCTTCATGAA+TGG | 0.362539 | 6_1:-6167849 | None:intergenic |
TAAGTTGACAAGGGAAGCTT+TGG | 0.365983 | 6_1:+6167475 | Msa0871260:CDS |
TTACCTTTCTGTGACACCTT+TGG | 0.366893 | 6_1:-6168269 | None:intergenic |
TTGGTTTCAAGACATGGATT+AGG | 0.372024 | 6_1:+6167398 | Msa0871260:CDS |
GGTCCATCCATCAACCATTA+TGG | 0.374680 | 6_1:-6167534 | None:intergenic |
AACTTGATGATTTCGATAAA+CGG | 0.377584 | 6_1:+6168598 | Msa0871260:CDS |
CCTGGTTAAAGTGCTTTGTT+TGG | 0.388256 | 6_1:+6168165 | Msa0871260:CDS |
CATGAATACAACCTAAAGTT+AGG | 0.389412 | 6_1:-6167991 | None:intergenic |
ACACACAATTGAGATGATAT+TGG | 0.393937 | 6_1:+6167808 | Msa0871260:CDS |
CTTCACTAAAGGAATAGATT+TGG | 0.395812 | 6_1:+6167934 | Msa0871260:CDS |
TTAGTATGTTCCTCTTCTTT+GGG | 0.398516 | 6_1:-6167559 | None:intergenic |
GTAATTGTCTCTTCATGAAT+GGG | 0.406055 | 6_1:-6167848 | None:intergenic |
GGACAACTTGGACTTGGGTT+TGG | 0.414715 | 6_1:+6169028 | Msa0871260:CDS |
CCATTTATCAGCCGCCCTTA+CGG | 0.417710 | 6_1:-6168646 | None:intergenic |
ATGAAATTGTTGAAGAGGTT+GGG | 0.421082 | 6_1:+6167678 | Msa0871260:CDS |
AGAAGCCCTTGAATGAATAA+AGG | 0.422807 | 6_1:-6167891 | None:intergenic |
AGTCATGAGGAAGGGTGTGT+TGG | 0.428618 | 6_1:+6167161 | Msa0871260:CDS |
CTGGCTGGACTTCCACTCCT+TGG | 0.428723 | 6_1:-6168047 | None:intergenic |
AGCCACAGGTTCCATTTATG+AGG | 0.433469 | 6_1:+6168207 | Msa0871260:CDS |
TCATATAGAGACTTCAGATA+TGG | 0.434208 | 6_1:-6169056 | None:intergenic |
CAAGGGCTTCTCTCATTCCT+CGG | 0.436209 | 6_1:+6167903 | Msa0871260:CDS |
GTTCTAGAGATGATTTGAAA+AGG | 0.436323 | 6_1:+6167225 | Msa0871260:CDS |
GATGTGGACAACTTGGACTT+GGG | 0.442076 | 6_1:+6169023 | Msa0871260:CDS |
TGGAAGAACATAGAGCTATA+TGG | 0.444164 | 6_1:+6167495 | Msa0871260:CDS |
ACAACATACTACAAAGTTGC+TGG | 0.447151 | 6_1:+6167734 | Msa0871260:CDS |
CGAAAAGGACTAGGTTGTAT+TGG | 0.449104 | 6_1:+6167771 | Msa0871260:CDS |
GATAAAAGGGTGCACCATAA+TGG | 0.450002 | 6_1:+6167520 | Msa0871260:CDS |
TTGTTTGGTCAGTTCAATAG+AGG | 0.450742 | 6_1:+6168180 | Msa0871260:CDS |
TAAACCATCATTTCCAGAAA+AGG | 0.450880 | 6_1:-6166901 | None:intergenic |
CCCAAATATCACTATAGTCC+TGG | 0.451084 | 6_1:+6168483 | Msa0871260:CDS |
ACTTGATGATTTCGATAAAC+GGG | 0.452100 | 6_1:+6168599 | Msa0871260:CDS |
AAGGGAATGAAGTGGCTGTT+GGG | 0.455501 | 6_1:+6167201 | Msa0871260:CDS |
AATGATAATGGAGACATTGA+AGG | 0.456097 | 6_1:+6168996 | Msa0871260:CDS |
CTTAGCTCTTTCTTCGGGAT+CGG | 0.457185 | 6_1:-6168565 | None:intergenic |
CCTCGTCTTCGCCAACTGGC+TGG | 0.459626 | 6_1:-6168062 | None:intergenic |
TAACAAACTCTTTAAGATGA+TGG | 0.467474 | 6_1:+6167655 | Msa0871260:CDS |
CAGTTGGCGAAGACGAGGAA+TGG | 0.470149 | 6_1:+6168067 | Msa0871260:CDS |
CCTTTAAGGTCATCAAAAGA+AGG | 0.475758 | 6_1:-6167431 | None:intergenic |
ATCAGCCGCCCTTACGGCTA+CGG | 0.476259 | 6_1:-6168640 | None:intergenic |
GAGCTATATGGAAGATAAAA+GGG | 0.478658 | 6_1:+6167507 | Msa0871260:CDS |
TCATAAATGGAACCTGTGGC+TGG | 0.481667 | 6_1:-6168205 | None:intergenic |
TCAATAGAGGAGCCAGCCAC+AGG | 0.484351 | 6_1:+6168193 | Msa0871260:CDS |
TGGGTGATCCCGTAGCCGTA+AGG | 0.485493 | 6_1:+6168631 | Msa0871260:CDS |
TGAGGTGAGAGAGGAAATGC+TGG | 0.485652 | 6_1:+6167115 | Msa0871260:CDS |
AAAGGGAATGAAGTGGCTGT+TGG | 0.490439 | 6_1:+6167200 | Msa0871260:CDS |
GGGTGCACCATAATGGTTGA+TGG | 0.497106 | 6_1:+6167527 | Msa0871260:CDS |
AGGTTCCATTTATGAGGCAT+TGG | 0.499117 | 6_1:+6168213 | Msa0871260:CDS |
TGGGAAATATGTCGAGGATG+TGG | 0.500347 | 6_1:+6168087 | Msa0871260:CDS |
TTGCGTGATGAATATGCTAC+TGG | 0.500573 | 6_1:+6169092 | Msa0871260:CDS |
GATGAAATTGTTGAAGAGGT+TGG | 0.502560 | 6_1:+6167677 | Msa0871260:CDS |
CCTTAAAGGTAAATATTTGA+CGG | 0.503436 | 6_1:+6167445 | Msa0871260:CDS |
CTAGAGATGATTTGAAAAGG+AGG | 0.505092 | 6_1:+6167228 | Msa0871260:CDS |
CGGTTGCAGCACTTCACTAA+AGG | 0.505508 | 6_1:+6167923 | Msa0871260:CDS |
GATTTGAAAAGGAGGAGAGT+TGG | 0.505908 | 6_1:+6167236 | Msa0871260:CDS |
TATGTTCCTCTTCTTTGGGT+CGG | 0.509046 | 6_1:-6167555 | None:intergenic |
TTTAGCCTTTATTCATTCAA+GGG | 0.512486 | 6_1:+6167886 | Msa0871260:CDS |
AGTTGGCGAAGACGAGGAAT+GGG | 0.512875 | 6_1:+6168068 | Msa0871260:CDS |
AGATGTGGACAACTTGGACT+TGG | 0.514194 | 6_1:+6169022 | Msa0871260:CDS |
AGGTTTAGATGTGGACAACT+TGG | 0.514964 | 6_1:+6169016 | Msa0871260:CDS |
CACAGCCCCTTGCATACTGC+AGG | 0.516801 | 6_1:+6168447 | Msa0871260:CDS |
CGGAAGAAGTTAAGTTGACA+AGG | 0.518982 | 6_1:+6167465 | Msa0871260:CDS |
ACTGATTTGGTTATGGAGCA+TGG | 0.519145 | 6_1:+6166954 | Msa0871260:CDS |
AAACAGTCCCACCAATGTGC+AGG | 0.520573 | 6_1:-6168672 | None:intergenic |
GTGATGACTACTTGTCTCGC+GGG | 0.522896 | 6_1:+6167018 | Msa0871260:CDS |
AAAATAGCCTGCAGTATGCA+AGG | 0.524163 | 6_1:-6168454 | None:intergenic |
TGTTGATGGCGAAAAGGACT+AGG | 0.525094 | 6_1:+6167762 | Msa0871260:CDS |
GAAAAGAATGTTCACATCCA+AGG | 0.525160 | 6_1:+6168030 | Msa0871260:CDS |
CGTTGATGCGTCAAATATGT+TGG | 0.528217 | 6_1:+6167625 | Msa0871260:CDS |
TCAGCCGCCCTTACGGCTAC+GGG | 0.530821 | 6_1:-6168639 | None:intergenic |
GTTGAAGTTTGTGAGGGTGT+TGG | 0.532860 | 6_1:+6167089 | Msa0871260:CDS |
GGGTGATCCCGTAGCCGTAA+GGG | 0.533972 | 6_1:+6168632 | Msa0871260:CDS |
AAGCTTCTCGAGCGGTTGCA+AGG | 0.538858 | 6_1:+6167309 | Msa0871260:CDS |
TTTCCAAAGGTGTCACAGAA+AGG | 0.539920 | 6_1:+6168266 | Msa0871260:CDS |
TTAATATCACCTCTAAATCC+AGG | 0.541578 | 6_1:-6168501 | None:intergenic |
TTGTGAGGGTGTTGGTGATG+AGG | 0.542544 | 6_1:+6167097 | Msa0871260:CDS |
AATGGATTCCTGCACATTGG+TGG | 0.546930 | 6_1:+6168664 | Msa0871260:CDS |
AGAAAATTGTATAACAAGGA+TGG | 0.549016 | 6_1:+6168539 | Msa0871260:CDS |
CCAAACAAAGCACTTTAACC+AGG | 0.554111 | 6_1:-6168165 | None:intergenic |
GAGGAAGGGTGTGTTGGAGT+TGG | 0.555127 | 6_1:+6167167 | Msa0871260:CDS |
TGAAATTGTTGAAGAGGTTG+GGG | 0.557345 | 6_1:+6167679 | Msa0871260:CDS |
AGTTGCTGGTGAGATGTTGA+TGG | 0.565937 | 6_1:+6167748 | Msa0871260:CDS |
GTGAGATGTTGATGGCGAAA+AGG | 0.569828 | 6_1:+6167756 | Msa0871260:CDS |
TGTGAGTTGGTTTCAAGACA+TGG | 0.572437 | 6_1:+6167392 | Msa0871260:CDS |
CTTGACATGCAGTTCTTATG+GGG | 0.573706 | 6_1:+6168743 | Msa0871260:CDS |
GTTTATTACTATGTGTGAGT+TGG | 0.574917 | 6_1:+6167379 | Msa0871260:CDS |
TGTTGGTGATGAGGTGAGAG+AGG | 0.579278 | 6_1:+6167106 | Msa0871260:CDS |
ATGGATTCCTGCACATTGGT+GGG | 0.581348 | 6_1:+6168665 | Msa0871260:CDS |
GATGGATGAAATTGTTGAAG+AGG | 0.583327 | 6_1:+6167673 | Msa0871260:CDS |
TTATCATCTTACCATCTCGA+AGG | 0.584228 | 6_1:-6168784 | None:intergenic |
CAACATATTTGACGCATCAA+CGG | 0.585450 | 6_1:-6167624 | None:intergenic |
TTAGTGAAGTGCTGCAACCG+AGG | 0.586944 | 6_1:-6167920 | None:intergenic |
GAATGTTCACATCCAAGGAG+TGG | 0.588060 | 6_1:+6168035 | Msa0871260:CDS |
AAATAGCCTGCAGTATGCAA+GGG | 0.590672 | 6_1:-6168453 | None:intergenic |
TGTGATGACTACTTGTCTCG+CGG | 0.591359 | 6_1:+6167017 | Msa0871260:CDS |
CAAACAAAGCACTTTAACCA+GGG | 0.596306 | 6_1:-6168164 | None:intergenic |
ATGGTTAAGAAGACTTTGAG+AGG | 0.598226 | 6_1:+6167284 | Msa0871260:CDS |
ATATCTTAGTGAATAATCCC+AGG | 0.599732 | 6_1:+6167582 | Msa0871260:CDS |
TTGCAAGAGAGTCATGAGGA+AGG | 0.602697 | 6_1:+6167152 | Msa0871260:CDS |
GTCTAGAAAATTGTATAACA+AGG | 0.607022 | 6_1:+6168535 | Msa0871260:CDS |
TGCAAGAGAGTCATGAGGAA+GGG | 0.607581 | 6_1:+6167153 | Msa0871260:CDS |
AGACATTGAAGGTTTAGATG+TGG | 0.608979 | 6_1:+6169007 | Msa0871260:CDS |
GCACCATAATGGTTGATGGA+TGG | 0.610235 | 6_1:+6167531 | Msa0871260:CDS |
GGAATAGATTTGGTGAAACA+GGG | 0.611878 | 6_1:+6167944 | Msa0871260:CDS |
GATGGACCGACCCAAAGAAG+AGG | 0.613918 | 6_1:+6167549 | Msa0871260:CDS |
TAATCAGAGTGCCTTCGAGA+TGG | 0.615533 | 6_1:+6168773 | Msa0871260:CDS |
GTTTAGATTCTAAGATAATG+GGG | 0.628119 | 6_1:+6166919 | Msa0871260:CDS |
GGAGTGGAAGTCCAGCCAGT+TGG | 0.628223 | 6_1:+6168051 | Msa0871260:CDS |
AGCTATTGCTGTCAATAACA+TGG | 0.628294 | 6_1:+6167265 | Msa0871260:CDS |
TGGTTAAGAAGACTTTGAGA+GGG | 0.629677 | 6_1:+6167285 | Msa0871260:CDS |
GGTTGTATTCATGAGAACGA+AGG | 0.633370 | 6_1:+6168001 | Msa0871260:CDS |
TGCCTCATAAATGGAACCTG+TGG | 0.634402 | 6_1:-6168209 | None:intergenic |
TGTCAAGCTCAATATACGAA+TGG | 0.634622 | 6_1:-6168727 | None:intergenic |
AGGTGAGAGAGGAAATGCTG+GGG | 0.642079 | 6_1:+6167117 | Msa0871260:CDS |
CAATGACATACCGCTCGATG+CGG | 0.642376 | 6_1:+6167343 | Msa0871260:CDS |
TTGACATGCAGTTCTTATGG+GGG | 0.643346 | 6_1:+6168744 | Msa0871260:CDS |
GAGGTGAGAGAGGAAATGCT+GGG | 0.644686 | 6_1:+6167116 | Msa0871260:CDS |
AAATGATGTTGAAGTTTGTG+AGG | 0.647447 | 6_1:+6167082 | Msa0871260:CDS |
GAGAGGGGAAGCTTCTCGAG+CGG | 0.650063 | 6_1:+6167301 | Msa0871260:CDS |
TCAATTGTGTGTGTTGCACA+AGG | 0.651808 | 6_1:-6167797 | None:intergenic |
TGATTTGCAAGAGAGTCATG+AGG | 0.653227 | 6_1:+6167148 | Msa0871260:CDS |
AATGATGTTGAAGTTTGTGA+GGG | 0.658615 | 6_1:+6167083 | Msa0871260:CDS |
TCATGAAGAGACAATTACAA+AGG | 0.662380 | 6_1:+6167853 | Msa0871260:CDS |
ATAAATGGATTCCTGCACAT+TGG | 0.663493 | 6_1:+6168661 | Msa0871260:CDS |
GAGGAATGGGAAATATGTCG+AGG | 0.663935 | 6_1:+6168081 | Msa0871260:CDS |
AATAGCCTGCAGTATGCAAG+GGG | 0.664304 | 6_1:-6168452 | None:intergenic |
TGATGACTACTTGTCTCGCG+GGG | 0.665196 | 6_1:+6167019 | Msa0871260:CDS |
TCACTCTTTACCGCATCGAG+CGG | 0.667186 | 6_1:-6167353 | None:intergenic |
GGTTAAGAAGACTTTGAGAG+GGG | 0.667282 | 6_1:+6167286 | Msa0871260:CDS |
AAATTGTATAACAAGGATGG+TGG | 0.669219 | 6_1:+6168542 | Msa0871260:CDS |
ATACAAATGAGTCTTTCCAA+AGG | 0.676610 | 6_1:+6168253 | Msa0871260:CDS |
TTAAGGTCATCAAAAGAAGG+TGG | 0.677208 | 6_1:-6167428 | None:intergenic |
AAACAAAGCACTTTAACCAG+GGG | 0.695208 | 6_1:-6168163 | None:intergenic |
TCATTAATGATCTCCCATGG+AGG | 0.700841 | 6_1:-6168405 | None:intergenic |
GGAAGAAGTTAAGTTGACAA+GGG | 0.723485 | 6_1:+6167466 | Msa0871260:CDS |
GGTGATATTAAAGTTAAACG+TGG | 0.757074 | 6_1:+6168513 | Msa0871260:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATTAATTGTATTTGTAT+TGG | + | chr6_1:6168847-6168866 | Msa0871260:intron | 10.0% |
!! | TATATTAATTGTATTTGTAT+TGG | + | chr6_1:6168847-6168866 | Msa0871260:intron | 10.0% |
!!! | AAAAAGTGAATTACTTTTCA+CGG | - | chr6_1:6168365-6168384 | None:intergenic | 20.0% |
!! | AATTAATATAAGCAAGTAGT+AGG | - | chr6_1:6168837-6168856 | None:intergenic | 20.0% |
!!! | AATTGTATTTGTATTGGTAT+AGG | + | chr6_1:6168853-6168872 | Msa0871260:intron | 20.0% |
!! | AGCTTAAATCTTAATGATAA+TGG | + | chr6_1:6168984-6169003 | Msa0871260:CDS | 20.0% |
!!! | AAAAAGTGAATTACTTTTCA+CGG | - | chr6_1:6168365-6168384 | None:intergenic | 20.0% |
!! | AATTAATATAAGCAAGTAGT+AGG | - | chr6_1:6168837-6168856 | None:intergenic | 20.0% |
!!! | AATTGTATTTGTATTGGTAT+AGG | + | chr6_1:6168853-6168872 | Msa0871260:intron | 20.0% |
!! | AGCTTAAATCTTAATGATAA+TGG | + | chr6_1:6168984-6169003 | Msa0871260:CDS | 20.0% |
!!! | TGGTTTAGATTCTAAGATAA+TGG | + | chr6_1:6166917-6166936 | Msa0871260:CDS | 25.0% |
!!! | GGTTTAGATTCTAAGATAAT+GGG | + | chr6_1:6166918-6166937 | Msa0871260:CDS | 25.0% |
!!! | GTTTAGATTCTAAGATAATG+GGG | + | chr6_1:6166919-6166938 | Msa0871260:CDS | 25.0% |
! | CCTTAAAGGTAAATATTTGA+CGG | + | chr6_1:6167445-6167464 | Msa0871260:CDS | 25.0% |
!! | ATCATCTTAAAGAGTTTGTT+AGG | - | chr6_1:6167656-6167675 | None:intergenic | 25.0% |
!!! | TAACAAACTCTTTAAGATGA+TGG | + | chr6_1:6167655-6167674 | Msa0871260:CDS | 25.0% |
!!! | TTTTAGCCTTTATTCATTCA+AGG | + | chr6_1:6167885-6167904 | Msa0871260:CDS | 25.0% |
!! | TTTAGCCTTTATTCATTCAA+GGG | + | chr6_1:6167886-6167905 | Msa0871260:CDS | 25.0% |
! | GTCTAGAAAATTGTATAACA+AGG | + | chr6_1:6168535-6168554 | Msa0871260:CDS | 25.0% |
! | AGAAAATTGTATAACAAGGA+TGG | + | chr6_1:6168539-6168558 | Msa0871260:CDS | 25.0% |
!! | AACTTGATGATTTCGATAAA+CGG | + | chr6_1:6168598-6168617 | Msa0871260:CDS | 25.0% |
!!! | TGGTTTAGATTCTAAGATAA+TGG | + | chr6_1:6166917-6166936 | Msa0871260:CDS | 25.0% |
!!! | GGTTTAGATTCTAAGATAAT+GGG | + | chr6_1:6166918-6166937 | Msa0871260:CDS | 25.0% |
!!! | GTTTAGATTCTAAGATAATG+GGG | + | chr6_1:6166919-6166938 | Msa0871260:CDS | 25.0% |
! | CCTTAAAGGTAAATATTTGA+CGG | + | chr6_1:6167445-6167464 | Msa0871260:CDS | 25.0% |
!! | ATCATCTTAAAGAGTTTGTT+AGG | - | chr6_1:6167656-6167675 | None:intergenic | 25.0% |
!!! | TAACAAACTCTTTAAGATGA+TGG | + | chr6_1:6167655-6167674 | Msa0871260:CDS | 25.0% |
!!! | TTTTAGCCTTTATTCATTCA+AGG | + | chr6_1:6167885-6167904 | Msa0871260:CDS | 25.0% |
!! | TTTAGCCTTTATTCATTCAA+GGG | + | chr6_1:6167886-6167905 | Msa0871260:CDS | 25.0% |
! | GTCTAGAAAATTGTATAACA+AGG | + | chr6_1:6168535-6168554 | Msa0871260:CDS | 25.0% |
! | AGAAAATTGTATAACAAGGA+TGG | + | chr6_1:6168539-6168558 | Msa0871260:CDS | 25.0% |
!! | AACTTGATGATTTCGATAAA+CGG | + | chr6_1:6168598-6168617 | Msa0871260:CDS | 25.0% |
TAAACCATCATTTCCAGAAA+AGG | - | chr6_1:6166904-6166923 | None:intergenic | 30.0% | |
ACCAAATCAGTAACATTCTT+TGG | - | chr6_1:6166945-6166964 | None:intergenic | 30.0% | |
!! | GAATGTTACTGATTTGGTTA+TGG | + | chr6_1:6166947-6166966 | Msa0871260:CDS | 30.0% |
AAATGATGTTGAAGTTTGTG+AGG | + | chr6_1:6167082-6167101 | Msa0871260:CDS | 30.0% | |
AATGATGTTGAAGTTTGTGA+GGG | + | chr6_1:6167083-6167102 | Msa0871260:CDS | 30.0% | |
!! | GAGTTGGTGAAAAAAGAAAA+GGG | + | chr6_1:6167183-6167202 | Msa0871260:CDS | 30.0% |
AAAAAGAAAAGGGAATGAAG+TGG | + | chr6_1:6167193-6167212 | Msa0871260:CDS | 30.0% | |
!! | GTTCTAGAGATGATTTGAAA+AGG | + | chr6_1:6167225-6167244 | Msa0871260:CDS | 30.0% |
GTTTATTACTATGTGTGAGT+TGG | + | chr6_1:6167379-6167398 | Msa0871260:CDS | 30.0% | |
CCGTCAAATATTTACCTTTA+AGG | - | chr6_1:6167448-6167467 | None:intergenic | 30.0% | |
AGAGCTATATGGAAGATAAA+AGG | + | chr6_1:6167506-6167525 | Msa0871260:CDS | 30.0% | |
GAGCTATATGGAAGATAAAA+GGG | + | chr6_1:6167507-6167526 | Msa0871260:CDS | 30.0% | |
TTAGTATGTTCCTCTTCTTT+GGG | - | chr6_1:6167562-6167581 | None:intergenic | 30.0% | |
TTTAGTATGTTCCTCTTCTT+TGG | - | chr6_1:6167563-6167582 | None:intergenic | 30.0% | |
ATATCTTAGTGAATAATCCC+AGG | + | chr6_1:6167582-6167601 | Msa0871260:CDS | 30.0% | |
TTCAAAAAGAATGTTCTCCT+GGG | - | chr6_1:6167602-6167621 | None:intergenic | 30.0% | |
ATGAAATTGTTGAAGAGGTT+GGG | + | chr6_1:6167678-6167697 | Msa0871260:CDS | 30.0% | |
TTGTATTGTCTGTCACAATT+TGG | - | chr6_1:6167718-6167737 | None:intergenic | 30.0% | |
ACACACAATTGAGATGATAT+TGG | + | chr6_1:6167808-6167827 | Msa0871260:CDS | 30.0% | |
GTAATTGTCTCTTCATGAAT+GGG | - | chr6_1:6167851-6167870 | None:intergenic | 30.0% | |
TGTAATTGTCTCTTCATGAA+TGG | - | chr6_1:6167852-6167871 | None:intergenic | 30.0% | |
TCATGAAGAGACAATTACAA+AGG | + | chr6_1:6167853-6167872 | Msa0871260:CDS | 30.0% | |
CTTCACTAAAGGAATAGATT+TGG | + | chr6_1:6167934-6167953 | Msa0871260:CDS | 30.0% | |
CATGAATACAACCTAAAGTT+AGG | - | chr6_1:6167994-6168013 | None:intergenic | 30.0% | |
ATACAAATGAGTCTTTCCAA+AGG | + | chr6_1:6168253-6168272 | Msa0871260:CDS | 30.0% | |
! | TTTTCATTAATGATCTCCCA+TGG | - | chr6_1:6168411-6168430 | None:intergenic | 30.0% |
TTAATATCACCTCTAAATCC+AGG | - | chr6_1:6168504-6168523 | None:intergenic | 30.0% | |
GGTGATATTAAAGTTAAACG+TGG | + | chr6_1:6168513-6168532 | Msa0871260:CDS | 30.0% | |
AAATTGTATAACAAGGATGG+TGG | + | chr6_1:6168542-6168561 | Msa0871260:CDS | 30.0% | |
! | ACTTGATGATTTCGATAAAC+GGG | + | chr6_1:6168599-6168618 | Msa0871260:CDS | 30.0% |
ACAATCAGAGCTAACAAAAT+TGG | + | chr6_1:6168704-6168723 | Msa0871260:CDS | 30.0% | |
!! | AATGATAATGGAGACATTGA+AGG | + | chr6_1:6168996-6169015 | Msa0871260:CDS | 30.0% |
TCATATAGAGACTTCAGATA+TGG | - | chr6_1:6169059-6169078 | None:intergenic | 30.0% | |
TAAACCATCATTTCCAGAAA+AGG | - | chr6_1:6166904-6166923 | None:intergenic | 30.0% | |
ACCAAATCAGTAACATTCTT+TGG | - | chr6_1:6166945-6166964 | None:intergenic | 30.0% | |
!! | GAATGTTACTGATTTGGTTA+TGG | + | chr6_1:6166947-6166966 | Msa0871260:CDS | 30.0% |
AAATGATGTTGAAGTTTGTG+AGG | + | chr6_1:6167082-6167101 | Msa0871260:CDS | 30.0% | |
AATGATGTTGAAGTTTGTGA+GGG | + | chr6_1:6167083-6167102 | Msa0871260:CDS | 30.0% | |
!! | GAGTTGGTGAAAAAAGAAAA+GGG | + | chr6_1:6167183-6167202 | Msa0871260:CDS | 30.0% |
AAAAAGAAAAGGGAATGAAG+TGG | + | chr6_1:6167193-6167212 | Msa0871260:CDS | 30.0% | |
!! | GTTCTAGAGATGATTTGAAA+AGG | + | chr6_1:6167225-6167244 | Msa0871260:CDS | 30.0% |
GTTTATTACTATGTGTGAGT+TGG | + | chr6_1:6167379-6167398 | Msa0871260:CDS | 30.0% | |
CCGTCAAATATTTACCTTTA+AGG | - | chr6_1:6167448-6167467 | None:intergenic | 30.0% | |
AGAGCTATATGGAAGATAAA+AGG | + | chr6_1:6167506-6167525 | Msa0871260:CDS | 30.0% | |
GAGCTATATGGAAGATAAAA+GGG | + | chr6_1:6167507-6167526 | Msa0871260:CDS | 30.0% | |
TTAGTATGTTCCTCTTCTTT+GGG | - | chr6_1:6167562-6167581 | None:intergenic | 30.0% | |
TTTAGTATGTTCCTCTTCTT+TGG | - | chr6_1:6167563-6167582 | None:intergenic | 30.0% | |
ATATCTTAGTGAATAATCCC+AGG | + | chr6_1:6167582-6167601 | Msa0871260:CDS | 30.0% | |
TTCAAAAAGAATGTTCTCCT+GGG | - | chr6_1:6167602-6167621 | None:intergenic | 30.0% | |
ATGAAATTGTTGAAGAGGTT+GGG | + | chr6_1:6167678-6167697 | Msa0871260:CDS | 30.0% | |
TTGTATTGTCTGTCACAATT+TGG | - | chr6_1:6167718-6167737 | None:intergenic | 30.0% | |
ACACACAATTGAGATGATAT+TGG | + | chr6_1:6167808-6167827 | Msa0871260:CDS | 30.0% | |
GTAATTGTCTCTTCATGAAT+GGG | - | chr6_1:6167851-6167870 | None:intergenic | 30.0% | |
TGTAATTGTCTCTTCATGAA+TGG | - | chr6_1:6167852-6167871 | None:intergenic | 30.0% | |
TCATGAAGAGACAATTACAA+AGG | + | chr6_1:6167853-6167872 | Msa0871260:CDS | 30.0% | |
CTTCACTAAAGGAATAGATT+TGG | + | chr6_1:6167934-6167953 | Msa0871260:CDS | 30.0% | |
CATGAATACAACCTAAAGTT+AGG | - | chr6_1:6167994-6168013 | None:intergenic | 30.0% | |
ATACAAATGAGTCTTTCCAA+AGG | + | chr6_1:6168253-6168272 | Msa0871260:CDS | 30.0% | |
! | TTTTCATTAATGATCTCCCA+TGG | - | chr6_1:6168411-6168430 | None:intergenic | 30.0% |
TTAATATCACCTCTAAATCC+AGG | - | chr6_1:6168504-6168523 | None:intergenic | 30.0% | |
GGTGATATTAAAGTTAAACG+TGG | + | chr6_1:6168513-6168532 | Msa0871260:CDS | 30.0% | |
AAATTGTATAACAAGGATGG+TGG | + | chr6_1:6168542-6168561 | Msa0871260:CDS | 30.0% | |
! | ACTTGATGATTTCGATAAAC+GGG | + | chr6_1:6168599-6168618 | Msa0871260:CDS | 30.0% |
ACAATCAGAGCTAACAAAAT+TGG | + | chr6_1:6168704-6168723 | Msa0871260:CDS | 30.0% | |
!! | AATGATAATGGAGACATTGA+AGG | + | chr6_1:6168996-6169015 | Msa0871260:CDS | 30.0% |
TCATATAGAGACTTCAGATA+TGG | - | chr6_1:6169059-6169078 | None:intergenic | 30.0% | |
!! | GATTCCTTTTCTGGAAATGA+TGG | + | chr6_1:6166897-6166916 | Msa0871260:CDS | 35.0% |
! | GCCAAAGAATGTTACTGATT+TGG | + | chr6_1:6166941-6166960 | Msa0871260:CDS | 35.0% |
! | TTATGCGTTTTTACGTCACT+TGG | + | chr6_1:6167043-6167062 | Msa0871260:CDS | 35.0% |
!! | GGAGTTGGTGAAAAAAGAAA+AGG | + | chr6_1:6167182-6167201 | Msa0871260:CDS | 35.0% |
CTAGAGATGATTTGAAAAGG+AGG | + | chr6_1:6167228-6167247 | Msa0871260:CDS | 35.0% | |
AGCTATTGCTGTCAATAACA+TGG | + | chr6_1:6167265-6167284 | Msa0871260:CDS | 35.0% | |
ATGGTTAAGAAGACTTTGAG+AGG | + | chr6_1:6167284-6167303 | Msa0871260:CDS | 35.0% | |
! | TGGTTAAGAAGACTTTGAGA+GGG | + | chr6_1:6167285-6167304 | Msa0871260:CDS | 35.0% |
TTGGTTTCAAGACATGGATT+AGG | + | chr6_1:6167398-6167417 | Msa0871260:CDS | 35.0% | |
TTAAGGTCATCAAAAGAAGG+TGG | - | chr6_1:6167431-6167450 | None:intergenic | 35.0% | |
!! | CCTTTAAGGTCATCAAAAGA+AGG | - | chr6_1:6167434-6167453 | None:intergenic | 35.0% |
!! | CCTTCTTTTGATGACCTTAA+AGG | + | chr6_1:6167431-6167450 | Msa0871260:CDS | 35.0% |
!! | GGAAGAAGTTAAGTTGACAA+GGG | + | chr6_1:6167466-6167485 | Msa0871260:CDS | 35.0% |
TGGAAGAACATAGAGCTATA+TGG | + | chr6_1:6167495-6167514 | Msa0871260:CDS | 35.0% | |
CTTCAAAAAGAATGTTCTCC+TGG | - | chr6_1:6167603-6167622 | None:intergenic | 35.0% | |
CAACATATTTGACGCATCAA+CGG | - | chr6_1:6167627-6167646 | None:intergenic | 35.0% | |
GATGGATGAAATTGTTGAAG+AGG | + | chr6_1:6167673-6167692 | Msa0871260:CDS | 35.0% | |
GATGAAATTGTTGAAGAGGT+TGG | + | chr6_1:6167677-6167696 | Msa0871260:CDS | 35.0% | |
TGAAATTGTTGAAGAGGTTG+GGG | + | chr6_1:6167679-6167698 | Msa0871260:CDS | 35.0% | |
ACAACATACTACAAAGTTGC+TGG | + | chr6_1:6167734-6167753 | Msa0871260:CDS | 35.0% | |
AGAAGCCCTTGAATGAATAA+AGG | - | chr6_1:6167894-6167913 | None:intergenic | 35.0% | |
!! | AGGAATAGATTTGGTGAAAC+AGG | + | chr6_1:6167943-6167962 | Msa0871260:CDS | 35.0% |
!! | GGAATAGATTTGGTGAAACA+GGG | + | chr6_1:6167944-6167963 | Msa0871260:CDS | 35.0% |
GAAAAGAATGTTCACATCCA+AGG | + | chr6_1:6168030-6168049 | Msa0871260:CDS | 35.0% | |
! | AAACAAAGCACTTTAACCAG+GGG | - | chr6_1:6168166-6168185 | None:intergenic | 35.0% |
! | CAAACAAAGCACTTTAACCA+GGG | - | chr6_1:6168167-6168186 | None:intergenic | 35.0% |
TTGTTTGGTCAGTTCAATAG+AGG | + | chr6_1:6168180-6168199 | Msa0871260:CDS | 35.0% | |
GAAAGGTAAATATGTCTTGC+AGG | + | chr6_1:6168283-6168302 | Msa0871260:intron | 35.0% | |
!!! | GAGCTTTTGTTTTGTTGTCT+TGG | + | chr6_1:6168334-6168353 | Msa0871260:intron | 35.0% |
!! | TTTTCAGTTTTATGCCTCCA+TGG | + | chr6_1:6168391-6168410 | Msa0871260:intron | 35.0% |
!! | TTTCAGTTTTATGCCTCCAT+GGG | + | chr6_1:6168392-6168411 | Msa0871260:intron | 35.0% |
CCAGGACTATAGTGATATTT+GGG | - | chr6_1:6168486-6168505 | None:intergenic | 35.0% | |
TCCAGGACTATAGTGATATT+TGG | - | chr6_1:6168487-6168506 | None:intergenic | 35.0% | |
! | TCAATCTTAGCTCTTTCTTC+GGG | - | chr6_1:6168573-6168592 | None:intergenic | 35.0% |
! | CTCAATCTTAGCTCTTTCTT+CGG | - | chr6_1:6168574-6168593 | None:intergenic | 35.0% |
! | ATAAATGGATTCCTGCACAT+TGG | + | chr6_1:6168661-6168680 | Msa0871260:CDS | 35.0% |
TGTCAAGCTCAATATACGAA+TGG | - | chr6_1:6168730-6168749 | None:intergenic | 35.0% | |
TTATCATCTTACCATCTCGA+AGG | - | chr6_1:6168787-6168806 | None:intergenic | 35.0% | |
CTAAGAGAAGAAACCATTTG+AGG | + | chr6_1:6168882-6168901 | Msa0871260:intron | 35.0% | |
!!! | CCCTCAATATTGCTTTTTCT+CGG | - | chr6_1:6168957-6168976 | None:intergenic | 35.0% |
CCGAGAAAAAGCAATATTGA+GGG | + | chr6_1:6168954-6168973 | Msa0871260:CDS | 35.0% | |
AGACATTGAAGGTTTAGATG+TGG | + | chr6_1:6169007-6169026 | Msa0871260:CDS | 35.0% | |
!! | GATTCCTTTTCTGGAAATGA+TGG | + | chr6_1:6166897-6166916 | Msa0871260:CDS | 35.0% |
! | GCCAAAGAATGTTACTGATT+TGG | + | chr6_1:6166941-6166960 | Msa0871260:CDS | 35.0% |
! | TTATGCGTTTTTACGTCACT+TGG | + | chr6_1:6167043-6167062 | Msa0871260:CDS | 35.0% |
!! | GGAGTTGGTGAAAAAAGAAA+AGG | + | chr6_1:6167182-6167201 | Msa0871260:CDS | 35.0% |
CTAGAGATGATTTGAAAAGG+AGG | + | chr6_1:6167228-6167247 | Msa0871260:CDS | 35.0% | |
AGCTATTGCTGTCAATAACA+TGG | + | chr6_1:6167265-6167284 | Msa0871260:CDS | 35.0% | |
ATGGTTAAGAAGACTTTGAG+AGG | + | chr6_1:6167284-6167303 | Msa0871260:CDS | 35.0% | |
! | TGGTTAAGAAGACTTTGAGA+GGG | + | chr6_1:6167285-6167304 | Msa0871260:CDS | 35.0% |
TTGGTTTCAAGACATGGATT+AGG | + | chr6_1:6167398-6167417 | Msa0871260:CDS | 35.0% | |
TTAAGGTCATCAAAAGAAGG+TGG | - | chr6_1:6167431-6167450 | None:intergenic | 35.0% | |
!! | CCTTTAAGGTCATCAAAAGA+AGG | - | chr6_1:6167434-6167453 | None:intergenic | 35.0% |
!! | CCTTCTTTTGATGACCTTAA+AGG | + | chr6_1:6167431-6167450 | Msa0871260:CDS | 35.0% |
!! | GGAAGAAGTTAAGTTGACAA+GGG | + | chr6_1:6167466-6167485 | Msa0871260:CDS | 35.0% |
TGGAAGAACATAGAGCTATA+TGG | + | chr6_1:6167495-6167514 | Msa0871260:CDS | 35.0% | |
CTTCAAAAAGAATGTTCTCC+TGG | - | chr6_1:6167603-6167622 | None:intergenic | 35.0% | |
CAACATATTTGACGCATCAA+CGG | - | chr6_1:6167627-6167646 | None:intergenic | 35.0% | |
GATGGATGAAATTGTTGAAG+AGG | + | chr6_1:6167673-6167692 | Msa0871260:CDS | 35.0% | |
GATGAAATTGTTGAAGAGGT+TGG | + | chr6_1:6167677-6167696 | Msa0871260:CDS | 35.0% | |
TGAAATTGTTGAAGAGGTTG+GGG | + | chr6_1:6167679-6167698 | Msa0871260:CDS | 35.0% | |
ACAACATACTACAAAGTTGC+TGG | + | chr6_1:6167734-6167753 | Msa0871260:CDS | 35.0% | |
AGAAGCCCTTGAATGAATAA+AGG | - | chr6_1:6167894-6167913 | None:intergenic | 35.0% | |
!! | AGGAATAGATTTGGTGAAAC+AGG | + | chr6_1:6167943-6167962 | Msa0871260:CDS | 35.0% |
!! | GGAATAGATTTGGTGAAACA+GGG | + | chr6_1:6167944-6167963 | Msa0871260:CDS | 35.0% |
GAAAAGAATGTTCACATCCA+AGG | + | chr6_1:6168030-6168049 | Msa0871260:CDS | 35.0% | |
! | AAACAAAGCACTTTAACCAG+GGG | - | chr6_1:6168166-6168185 | None:intergenic | 35.0% |
! | CAAACAAAGCACTTTAACCA+GGG | - | chr6_1:6168167-6168186 | None:intergenic | 35.0% |
TTGTTTGGTCAGTTCAATAG+AGG | + | chr6_1:6168180-6168199 | Msa0871260:CDS | 35.0% | |
GAAAGGTAAATATGTCTTGC+AGG | + | chr6_1:6168283-6168302 | Msa0871260:intron | 35.0% | |
!!! | GAGCTTTTGTTTTGTTGTCT+TGG | + | chr6_1:6168334-6168353 | Msa0871260:intron | 35.0% |
!! | TTTTCAGTTTTATGCCTCCA+TGG | + | chr6_1:6168391-6168410 | Msa0871260:intron | 35.0% |
!! | TTTCAGTTTTATGCCTCCAT+GGG | + | chr6_1:6168392-6168411 | Msa0871260:intron | 35.0% |
CCAGGACTATAGTGATATTT+GGG | - | chr6_1:6168486-6168505 | None:intergenic | 35.0% | |
TCCAGGACTATAGTGATATT+TGG | - | chr6_1:6168487-6168506 | None:intergenic | 35.0% | |
! | TCAATCTTAGCTCTTTCTTC+GGG | - | chr6_1:6168573-6168592 | None:intergenic | 35.0% |
! | CTCAATCTTAGCTCTTTCTT+CGG | - | chr6_1:6168574-6168593 | None:intergenic | 35.0% |
! | ATAAATGGATTCCTGCACAT+TGG | + | chr6_1:6168661-6168680 | Msa0871260:CDS | 35.0% |
TGTCAAGCTCAATATACGAA+TGG | - | chr6_1:6168730-6168749 | None:intergenic | 35.0% | |
TTATCATCTTACCATCTCGA+AGG | - | chr6_1:6168787-6168806 | None:intergenic | 35.0% | |
CTAAGAGAAGAAACCATTTG+AGG | + | chr6_1:6168882-6168901 | Msa0871260:intron | 35.0% | |
!!! | CCCTCAATATTGCTTTTTCT+CGG | - | chr6_1:6168957-6168976 | None:intergenic | 35.0% |
CCGAGAAAAAGCAATATTGA+GGG | + | chr6_1:6168954-6168973 | Msa0871260:CDS | 35.0% | |
AGACATTGAAGGTTTAGATG+TGG | + | chr6_1:6169007-6169026 | Msa0871260:CDS | 35.0% | |
!!! | AGCTCTGTTGATTCCTTTTC+TGG | + | chr6_1:6166888-6166907 | Msa0871260:CDS | 40.0% |
!! | ACTGATTTGGTTATGGAGCA+TGG | + | chr6_1:6166954-6166973 | Msa0871260:CDS | 40.0% |
!!! | GAGCATGGTGTTTTAGTTGA+TGG | + | chr6_1:6166969-6166988 | Msa0871260:CDS | 40.0% |
! | TGATTTGCAAGAGAGTCATG+AGG | + | chr6_1:6167148-6167167 | Msa0871260:CDS | 40.0% |
GATTTGAAAAGGAGGAGAGT+TGG | + | chr6_1:6167236-6167255 | Msa0871260:CDS | 40.0% | |
! | GGTTAAGAAGACTTTGAGAG+GGG | + | chr6_1:6167286-6167305 | Msa0871260:CDS | 40.0% |
!! | TGTGAGTTGGTTTCAAGACA+TGG | + | chr6_1:6167392-6167411 | Msa0871260:CDS | 40.0% |
!! | CGGAAGAAGTTAAGTTGACA+AGG | + | chr6_1:6167465-6167484 | Msa0871260:CDS | 40.0% |
! | TAAGTTGACAAGGGAAGCTT+TGG | + | chr6_1:6167475-6167494 | Msa0871260:CDS | 40.0% |
! | GATAAAAGGGTGCACCATAA+TGG | + | chr6_1:6167520-6167539 | Msa0871260:CDS | 40.0% |
TATGTTCCTCTTCTTTGGGT+CGG | - | chr6_1:6167558-6167577 | None:intergenic | 40.0% | |
CGTTGATGCGTCAAATATGT+TGG | + | chr6_1:6167625-6167644 | Msa0871260:CDS | 40.0% | |
CGAAAAGGACTAGGTTGTAT+TGG | + | chr6_1:6167771-6167790 | Msa0871260:CDS | 40.0% | |
TCAATTGTGTGTGTTGCACA+AGG | - | chr6_1:6167800-6167819 | None:intergenic | 40.0% | |
GCTGCATCTTACCTAACTTT+AGG | + | chr6_1:6167980-6167999 | Msa0871260:CDS | 40.0% | |
GGTTGTATTCATGAGAACGA+AGG | + | chr6_1:6168001-6168020 | Msa0871260:CDS | 40.0% | |
! | ATATGTCGAGGATGTGGTTT+TGG | + | chr6_1:6168093-6168112 | Msa0871260:CDS | 40.0% |
!! | TTTTAAAAGTGCACATCCCC+TGG | + | chr6_1:6168147-6168166 | Msa0871260:CDS | 40.0% |
! | CCAAACAAAGCACTTTAACC+AGG | - | chr6_1:6168168-6168187 | None:intergenic | 40.0% |
! | CCTGGTTAAAGTGCTTTGTT+TGG | + | chr6_1:6168165-6168184 | Msa0871260:CDS | 40.0% |
AGGTTCCATTTATGAGGCAT+TGG | + | chr6_1:6168213-6168232 | Msa0871260:CDS | 40.0% | |
TTGCTCCAATGCCTCATAAA+TGG | - | chr6_1:6168221-6168240 | None:intergenic | 40.0% | |
!! | TTTCCAAAGGTGTCACAGAA+AGG | + | chr6_1:6168266-6168285 | Msa0871260:CDS | 40.0% |
TTACCTTTCTGTGACACCTT+TGG | - | chr6_1:6168272-6168291 | None:intergenic | 40.0% | |
TCATTAATGATCTCCCATGG+AGG | - | chr6_1:6168408-6168427 | None:intergenic | 40.0% | |
AAATAGCCTGCAGTATGCAA+GGG | - | chr6_1:6168456-6168475 | None:intergenic | 40.0% | |
AAAATAGCCTGCAGTATGCA+AGG | - | chr6_1:6168457-6168476 | None:intergenic | 40.0% | |
CCCAAATATCACTATAGTCC+TGG | + | chr6_1:6168483-6168502 | Msa0871260:CDS | 40.0% | |
CACTATAGTCCTGGATTTAG+AGG | + | chr6_1:6168492-6168511 | Msa0871260:CDS | 40.0% | |
! | GATAAACGGGCAGATTTTCT+GGG | + | chr6_1:6168612-6168631 | Msa0871260:CDS | 40.0% |
AGCTTGACATGCAGTTCTTA+TGG | + | chr6_1:6168741-6168760 | Msa0871260:CDS | 40.0% | |
GCTTGACATGCAGTTCTTAT+GGG | + | chr6_1:6168742-6168761 | Msa0871260:CDS | 40.0% | |
CTTGACATGCAGTTCTTATG+GGG | + | chr6_1:6168743-6168762 | Msa0871260:CDS | 40.0% | |
TTGACATGCAGTTCTTATGG+GGG | + | chr6_1:6168744-6168763 | Msa0871260:CDS | 40.0% | |
AATGGTTTCTTCTCTTAGCG+TGG | - | chr6_1:6168880-6168899 | None:intergenic | 40.0% | |
! | TACGAGTCTTTTGCCTCAAA+TGG | - | chr6_1:6168898-6168917 | None:intergenic | 40.0% |
GCCGAGAAAAAGCAATATTG+AGG | + | chr6_1:6168953-6168972 | Msa0871260:intron | 40.0% | |
AGGTTTAGATGTGGACAACT+TGG | + | chr6_1:6169016-6169035 | Msa0871260:CDS | 40.0% | |
TTGCGTGATGAATATGCTAC+TGG | + | chr6_1:6169092-6169111 | Msa0871260:CDS | 40.0% | |
!!! | AGCTCTGTTGATTCCTTTTC+TGG | + | chr6_1:6166888-6166907 | Msa0871260:CDS | 40.0% |
!! | ACTGATTTGGTTATGGAGCA+TGG | + | chr6_1:6166954-6166973 | Msa0871260:CDS | 40.0% |
!!! | GAGCATGGTGTTTTAGTTGA+TGG | + | chr6_1:6166969-6166988 | Msa0871260:CDS | 40.0% |
! | TGATTTGCAAGAGAGTCATG+AGG | + | chr6_1:6167148-6167167 | Msa0871260:CDS | 40.0% |
GATTTGAAAAGGAGGAGAGT+TGG | + | chr6_1:6167236-6167255 | Msa0871260:CDS | 40.0% | |
! | GGTTAAGAAGACTTTGAGAG+GGG | + | chr6_1:6167286-6167305 | Msa0871260:CDS | 40.0% |
!! | TGTGAGTTGGTTTCAAGACA+TGG | + | chr6_1:6167392-6167411 | Msa0871260:CDS | 40.0% |
!! | CGGAAGAAGTTAAGTTGACA+AGG | + | chr6_1:6167465-6167484 | Msa0871260:CDS | 40.0% |
! | TAAGTTGACAAGGGAAGCTT+TGG | + | chr6_1:6167475-6167494 | Msa0871260:CDS | 40.0% |
! | GATAAAAGGGTGCACCATAA+TGG | + | chr6_1:6167520-6167539 | Msa0871260:CDS | 40.0% |
TATGTTCCTCTTCTTTGGGT+CGG | - | chr6_1:6167558-6167577 | None:intergenic | 40.0% | |
CGTTGATGCGTCAAATATGT+TGG | + | chr6_1:6167625-6167644 | Msa0871260:CDS | 40.0% | |
CGAAAAGGACTAGGTTGTAT+TGG | + | chr6_1:6167771-6167790 | Msa0871260:CDS | 40.0% | |
TCAATTGTGTGTGTTGCACA+AGG | - | chr6_1:6167800-6167819 | None:intergenic | 40.0% | |
GCTGCATCTTACCTAACTTT+AGG | + | chr6_1:6167980-6167999 | Msa0871260:CDS | 40.0% | |
GGTTGTATTCATGAGAACGA+AGG | + | chr6_1:6168001-6168020 | Msa0871260:CDS | 40.0% | |
! | ATATGTCGAGGATGTGGTTT+TGG | + | chr6_1:6168093-6168112 | Msa0871260:CDS | 40.0% |
!! | TTTTAAAAGTGCACATCCCC+TGG | + | chr6_1:6168147-6168166 | Msa0871260:CDS | 40.0% |
! | CCAAACAAAGCACTTTAACC+AGG | - | chr6_1:6168168-6168187 | None:intergenic | 40.0% |
! | CCTGGTTAAAGTGCTTTGTT+TGG | + | chr6_1:6168165-6168184 | Msa0871260:CDS | 40.0% |
AGGTTCCATTTATGAGGCAT+TGG | + | chr6_1:6168213-6168232 | Msa0871260:CDS | 40.0% | |
TTGCTCCAATGCCTCATAAA+TGG | - | chr6_1:6168221-6168240 | None:intergenic | 40.0% | |
!! | TTTCCAAAGGTGTCACAGAA+AGG | + | chr6_1:6168266-6168285 | Msa0871260:CDS | 40.0% |
TTACCTTTCTGTGACACCTT+TGG | - | chr6_1:6168272-6168291 | None:intergenic | 40.0% | |
TCATTAATGATCTCCCATGG+AGG | - | chr6_1:6168408-6168427 | None:intergenic | 40.0% | |
AAATAGCCTGCAGTATGCAA+GGG | - | chr6_1:6168456-6168475 | None:intergenic | 40.0% | |
AAAATAGCCTGCAGTATGCA+AGG | - | chr6_1:6168457-6168476 | None:intergenic | 40.0% | |
CCCAAATATCACTATAGTCC+TGG | + | chr6_1:6168483-6168502 | Msa0871260:CDS | 40.0% | |
CACTATAGTCCTGGATTTAG+AGG | + | chr6_1:6168492-6168511 | Msa0871260:CDS | 40.0% | |
! | GATAAACGGGCAGATTTTCT+GGG | + | chr6_1:6168612-6168631 | Msa0871260:CDS | 40.0% |
AGCTTGACATGCAGTTCTTA+TGG | + | chr6_1:6168741-6168760 | Msa0871260:CDS | 40.0% | |
GCTTGACATGCAGTTCTTAT+GGG | + | chr6_1:6168742-6168761 | Msa0871260:CDS | 40.0% | |
CTTGACATGCAGTTCTTATG+GGG | + | chr6_1:6168743-6168762 | Msa0871260:CDS | 40.0% | |
TTGACATGCAGTTCTTATGG+GGG | + | chr6_1:6168744-6168763 | Msa0871260:CDS | 40.0% | |
AATGGTTTCTTCTCTTAGCG+TGG | - | chr6_1:6168880-6168899 | None:intergenic | 40.0% | |
! | TACGAGTCTTTTGCCTCAAA+TGG | - | chr6_1:6168898-6168917 | None:intergenic | 40.0% |
GCCGAGAAAAAGCAATATTG+AGG | + | chr6_1:6168953-6168972 | Msa0871260:intron | 40.0% | |
AGGTTTAGATGTGGACAACT+TGG | + | chr6_1:6169016-6169035 | Msa0871260:CDS | 40.0% | |
TTGCGTGATGAATATGCTAC+TGG | + | chr6_1:6169092-6169111 | Msa0871260:CDS | 40.0% | |
TGTGATGACTACTTGTCTCG+CGG | + | chr6_1:6167017-6167036 | Msa0871260:CDS | 45.0% | |
! | GTTGAAGTTTGTGAGGGTGT+TGG | + | chr6_1:6167089-6167108 | Msa0871260:CDS | 45.0% |
TTGCAAGAGAGTCATGAGGA+AGG | + | chr6_1:6167152-6167171 | Msa0871260:CDS | 45.0% | |
TGCAAGAGAGTCATGAGGAA+GGG | + | chr6_1:6167153-6167172 | Msa0871260:CDS | 45.0% | |
AAAGGGAATGAAGTGGCTGT+TGG | + | chr6_1:6167200-6167219 | Msa0871260:CDS | 45.0% | |
AAGGGAATGAAGTGGCTGTT+GGG | + | chr6_1:6167201-6167220 | Msa0871260:CDS | 45.0% | |
!! | GCACCATAATGGTTGATGGA+TGG | + | chr6_1:6167531-6167550 | Msa0871260:CDS | 45.0% |
GGTCCATCCATCAACCATTA+TGG | - | chr6_1:6167537-6167556 | None:intergenic | 45.0% | |
AGTTGCTGGTGAGATGTTGA+TGG | + | chr6_1:6167748-6167767 | Msa0871260:CDS | 45.0% | |
!! | GTGAGATGTTGATGGCGAAA+AGG | + | chr6_1:6167756-6167775 | Msa0871260:CDS | 45.0% |
!! | TGTTGATGGCGAAAAGGACT+AGG | + | chr6_1:6167762-6167781 | Msa0871260:CDS | 45.0% |
GAATGTTCACATCCAAGGAG+TGG | + | chr6_1:6168035-6168054 | Msa0871260:CDS | 45.0% | |
GAGGAATGGGAAATATGTCG+AGG | + | chr6_1:6168081-6168100 | Msa0871260:CDS | 45.0% | |
TGGGAAATATGTCGAGGATG+TGG | + | chr6_1:6168087-6168106 | Msa0871260:CDS | 45.0% | |
!!! | AGGATGTGGTTTTGGACACA+CGG | + | chr6_1:6168101-6168120 | Msa0871260:CDS | 45.0% |
!!! | TGGTTTTGGACACACGGTTT+TGG | + | chr6_1:6168107-6168126 | Msa0871260:CDS | 45.0% |
!!! | GGTTTTGGACACACGGTTTT+GGG | + | chr6_1:6168108-6168127 | Msa0871260:CDS | 45.0% |
TCATAAATGGAACCTGTGGC+TGG | - | chr6_1:6168208-6168227 | None:intergenic | 45.0% | |
AGCCACAGGTTCCATTTATG+AGG | + | chr6_1:6168207-6168226 | Msa0871260:CDS | 45.0% | |
TGCCTCATAAATGGAACCTG+TGG | - | chr6_1:6168212-6168231 | None:intergenic | 45.0% | |
AATAGCCTGCAGTATGCAAG+GGG | - | chr6_1:6168455-6168474 | None:intergenic | 45.0% | |
! | CTTAGCTCTTTCTTCGGGAT+CGG | - | chr6_1:6168568-6168587 | None:intergenic | 45.0% |
! | CGATAAACGGGCAGATTTTC+TGG | + | chr6_1:6168611-6168630 | Msa0871260:CDS | 45.0% |
! | AATGGATTCCTGCACATTGG+TGG | + | chr6_1:6168664-6168683 | Msa0871260:CDS | 45.0% |
ATGGATTCCTGCACATTGGT+GGG | + | chr6_1:6168665-6168684 | Msa0871260:CDS | 45.0% | |
! | TAATCAGAGTGCCTTCGAGA+TGG | + | chr6_1:6168773-6168792 | Msa0871260:CDS | 45.0% |
AGATGTGGACAACTTGGACT+TGG | + | chr6_1:6169022-6169041 | Msa0871260:CDS | 45.0% | |
GATGTGGACAACTTGGACTT+GGG | + | chr6_1:6169023-6169042 | Msa0871260:CDS | 45.0% | |
TGTGATGACTACTTGTCTCG+CGG | + | chr6_1:6167017-6167036 | Msa0871260:CDS | 45.0% | |
! | GTTGAAGTTTGTGAGGGTGT+TGG | + | chr6_1:6167089-6167108 | Msa0871260:CDS | 45.0% |
TTGCAAGAGAGTCATGAGGA+AGG | + | chr6_1:6167152-6167171 | Msa0871260:CDS | 45.0% | |
TGCAAGAGAGTCATGAGGAA+GGG | + | chr6_1:6167153-6167172 | Msa0871260:CDS | 45.0% | |
AAAGGGAATGAAGTGGCTGT+TGG | + | chr6_1:6167200-6167219 | Msa0871260:CDS | 45.0% | |
AAGGGAATGAAGTGGCTGTT+GGG | + | chr6_1:6167201-6167220 | Msa0871260:CDS | 45.0% | |
!! | GCACCATAATGGTTGATGGA+TGG | + | chr6_1:6167531-6167550 | Msa0871260:CDS | 45.0% |
GGTCCATCCATCAACCATTA+TGG | - | chr6_1:6167537-6167556 | None:intergenic | 45.0% | |
AGTTGCTGGTGAGATGTTGA+TGG | + | chr6_1:6167748-6167767 | Msa0871260:CDS | 45.0% | |
!! | GTGAGATGTTGATGGCGAAA+AGG | + | chr6_1:6167756-6167775 | Msa0871260:CDS | 45.0% |
!! | TGTTGATGGCGAAAAGGACT+AGG | + | chr6_1:6167762-6167781 | Msa0871260:CDS | 45.0% |
GAATGTTCACATCCAAGGAG+TGG | + | chr6_1:6168035-6168054 | Msa0871260:CDS | 45.0% | |
GAGGAATGGGAAATATGTCG+AGG | + | chr6_1:6168081-6168100 | Msa0871260:CDS | 45.0% | |
TGGGAAATATGTCGAGGATG+TGG | + | chr6_1:6168087-6168106 | Msa0871260:CDS | 45.0% | |
!!! | AGGATGTGGTTTTGGACACA+CGG | + | chr6_1:6168101-6168120 | Msa0871260:CDS | 45.0% |
!!! | TGGTTTTGGACACACGGTTT+TGG | + | chr6_1:6168107-6168126 | Msa0871260:CDS | 45.0% |
!!! | GGTTTTGGACACACGGTTTT+GGG | + | chr6_1:6168108-6168127 | Msa0871260:CDS | 45.0% |
TCATAAATGGAACCTGTGGC+TGG | - | chr6_1:6168208-6168227 | None:intergenic | 45.0% | |
AGCCACAGGTTCCATTTATG+AGG | + | chr6_1:6168207-6168226 | Msa0871260:CDS | 45.0% | |
TGCCTCATAAATGGAACCTG+TGG | - | chr6_1:6168212-6168231 | None:intergenic | 45.0% | |
AATAGCCTGCAGTATGCAAG+GGG | - | chr6_1:6168455-6168474 | None:intergenic | 45.0% | |
! | CTTAGCTCTTTCTTCGGGAT+CGG | - | chr6_1:6168568-6168587 | None:intergenic | 45.0% |
! | CGATAAACGGGCAGATTTTC+TGG | + | chr6_1:6168611-6168630 | Msa0871260:CDS | 45.0% |
! | AATGGATTCCTGCACATTGG+TGG | + | chr6_1:6168664-6168683 | Msa0871260:CDS | 45.0% |
ATGGATTCCTGCACATTGGT+GGG | + | chr6_1:6168665-6168684 | Msa0871260:CDS | 45.0% | |
! | TAATCAGAGTGCCTTCGAGA+TGG | + | chr6_1:6168773-6168792 | Msa0871260:CDS | 45.0% |
AGATGTGGACAACTTGGACT+TGG | + | chr6_1:6169022-6169041 | Msa0871260:CDS | 45.0% | |
GATGTGGACAACTTGGACTT+GGG | + | chr6_1:6169023-6169042 | Msa0871260:CDS | 45.0% | |
GTGATGACTACTTGTCTCGC+GGG | + | chr6_1:6167018-6167037 | Msa0871260:CDS | 50.0% | |
TGATGACTACTTGTCTCGCG+GGG | + | chr6_1:6167019-6167038 | Msa0871260:CDS | 50.0% | |
! | GCGTTTTTACGTCACTTGGC+TGG | + | chr6_1:6167047-6167066 | Msa0871260:CDS | 50.0% |
TTACGTCACTTGGCTGGAAC+TGG | + | chr6_1:6167053-6167072 | Msa0871260:CDS | 50.0% | |
!! | TTGTGAGGGTGTTGGTGATG+AGG | + | chr6_1:6167097-6167116 | Msa0871260:CDS | 50.0% |
!! | TGTTGGTGATGAGGTGAGAG+AGG | + | chr6_1:6167106-6167125 | Msa0871260:CDS | 50.0% |
TGAGGTGAGAGAGGAAATGC+TGG | + | chr6_1:6167115-6167134 | Msa0871260:CDS | 50.0% | |
GAGGTGAGAGAGGAAATGCT+GGG | + | chr6_1:6167116-6167135 | Msa0871260:CDS | 50.0% | |
AGGTGAGAGAGGAAATGCTG+GGG | + | chr6_1:6167117-6167136 | Msa0871260:CDS | 50.0% | |
! | AGTCATGAGGAAGGGTGTGT+TGG | + | chr6_1:6167161-6167180 | Msa0871260:CDS | 50.0% |
CAATGACATACCGCTCGATG+CGG | + | chr6_1:6167343-6167362 | Msa0871260:CDS | 50.0% | |
TCACTCTTTACCGCATCGAG+CGG | - | chr6_1:6167356-6167375 | None:intergenic | 50.0% | |
GGGTGCACCATAATGGTTGA+TGG | + | chr6_1:6167527-6167546 | Msa0871260:CDS | 50.0% | |
CAAGGGCTTCTCTCATTCCT+CGG | + | chr6_1:6167903-6167922 | Msa0871260:CDS | 50.0% | |
!! | TTAGTGAAGTGCTGCAACCG+AGG | - | chr6_1:6167923-6167942 | None:intergenic | 50.0% |
CGGTTGCAGCACTTCACTAA+AGG | + | chr6_1:6167923-6167942 | Msa0871260:CDS | 50.0% | |
AGTTGGCGAAGACGAGGAAT+GGG | + | chr6_1:6168068-6168087 | Msa0871260:CDS | 50.0% | |
! | GGCATTGGAGCAAGCTAAAC+AGG | + | chr6_1:6168228-6168247 | Msa0871260:CDS | 50.0% |
CCATTTATCAGCCGCCCTTA+CGG | - | chr6_1:6168649-6168668 | None:intergenic | 50.0% | |
AAACAGTCCCACCAATGTGC+AGG | - | chr6_1:6168675-6168694 | None:intergenic | 50.0% | |
! | GCACATTGGTGGGACTGTTT+TGG | + | chr6_1:6168675-6168694 | Msa0871260:CDS | 50.0% |
GGACAACTTGGACTTGGGTT+TGG | + | chr6_1:6169028-6169047 | Msa0871260:CDS | 50.0% | |
GTGATGACTACTTGTCTCGC+GGG | + | chr6_1:6167018-6167037 | Msa0871260:CDS | 50.0% | |
TGATGACTACTTGTCTCGCG+GGG | + | chr6_1:6167019-6167038 | Msa0871260:CDS | 50.0% | |
! | GCGTTTTTACGTCACTTGGC+TGG | + | chr6_1:6167047-6167066 | Msa0871260:CDS | 50.0% |
TTACGTCACTTGGCTGGAAC+TGG | + | chr6_1:6167053-6167072 | Msa0871260:CDS | 50.0% | |
!! | TTGTGAGGGTGTTGGTGATG+AGG | + | chr6_1:6167097-6167116 | Msa0871260:CDS | 50.0% |
!! | TGTTGGTGATGAGGTGAGAG+AGG | + | chr6_1:6167106-6167125 | Msa0871260:CDS | 50.0% |
TGAGGTGAGAGAGGAAATGC+TGG | + | chr6_1:6167115-6167134 | Msa0871260:CDS | 50.0% | |
GAGGTGAGAGAGGAAATGCT+GGG | + | chr6_1:6167116-6167135 | Msa0871260:CDS | 50.0% | |
AGGTGAGAGAGGAAATGCTG+GGG | + | chr6_1:6167117-6167136 | Msa0871260:CDS | 50.0% | |
! | AGTCATGAGGAAGGGTGTGT+TGG | + | chr6_1:6167161-6167180 | Msa0871260:CDS | 50.0% |
CAATGACATACCGCTCGATG+CGG | + | chr6_1:6167343-6167362 | Msa0871260:CDS | 50.0% | |
TCACTCTTTACCGCATCGAG+CGG | - | chr6_1:6167356-6167375 | None:intergenic | 50.0% | |
GGGTGCACCATAATGGTTGA+TGG | + | chr6_1:6167527-6167546 | Msa0871260:CDS | 50.0% | |
CAAGGGCTTCTCTCATTCCT+CGG | + | chr6_1:6167903-6167922 | Msa0871260:CDS | 50.0% | |
!! | TTAGTGAAGTGCTGCAACCG+AGG | - | chr6_1:6167923-6167942 | None:intergenic | 50.0% |
CGGTTGCAGCACTTCACTAA+AGG | + | chr6_1:6167923-6167942 | Msa0871260:CDS | 50.0% | |
AGTTGGCGAAGACGAGGAAT+GGG | + | chr6_1:6168068-6168087 | Msa0871260:CDS | 50.0% | |
! | GGCATTGGAGCAAGCTAAAC+AGG | + | chr6_1:6168228-6168247 | Msa0871260:CDS | 50.0% |
CCATTTATCAGCCGCCCTTA+CGG | - | chr6_1:6168649-6168668 | None:intergenic | 50.0% | |
AAACAGTCCCACCAATGTGC+AGG | - | chr6_1:6168675-6168694 | None:intergenic | 50.0% | |
! | GCACATTGGTGGGACTGTTT+TGG | + | chr6_1:6168675-6168694 | Msa0871260:CDS | 50.0% |
GGACAACTTGGACTTGGGTT+TGG | + | chr6_1:6169028-6169047 | Msa0871260:CDS | 50.0% | |
! | GAGGAAGGGTGTGTTGGAGT+TGG | + | chr6_1:6167167-6167186 | Msa0871260:CDS | 55.0% |
AAGCTTCTCGAGCGGTTGCA+AGG | + | chr6_1:6167309-6167328 | Msa0871260:CDS | 55.0% | |
GATGGACCGACCCAAAGAAG+AGG | + | chr6_1:6167549-6167568 | Msa0871260:CDS | 55.0% | |
CATTCCTCGTCTTCGCCAAC+TGG | - | chr6_1:6168069-6168088 | None:intergenic | 55.0% | |
CAGTTGGCGAAGACGAGGAA+TGG | + | chr6_1:6168067-6168086 | Msa0871260:CDS | 55.0% | |
TCAATAGAGGAGCCAGCCAC+AGG | + | chr6_1:6168193-6168212 | Msa0871260:CDS | 55.0% | |
CCGTAAGGGCGGCTGATAAA+TGG | + | chr6_1:6168646-6168665 | Msa0871260:CDS | 55.0% | |
! | GAGGAAGGGTGTGTTGGAGT+TGG | + | chr6_1:6167167-6167186 | Msa0871260:CDS | 55.0% |
AAGCTTCTCGAGCGGTTGCA+AGG | + | chr6_1:6167309-6167328 | Msa0871260:CDS | 55.0% | |
GATGGACCGACCCAAAGAAG+AGG | + | chr6_1:6167549-6167568 | Msa0871260:CDS | 55.0% | |
CATTCCTCGTCTTCGCCAAC+TGG | - | chr6_1:6168069-6168088 | None:intergenic | 55.0% | |
CAGTTGGCGAAGACGAGGAA+TGG | + | chr6_1:6168067-6168086 | Msa0871260:CDS | 55.0% | |
TCAATAGAGGAGCCAGCCAC+AGG | + | chr6_1:6168193-6168212 | Msa0871260:CDS | 55.0% | |
CCGTAAGGGCGGCTGATAAA+TGG | + | chr6_1:6168646-6168665 | Msa0871260:CDS | 55.0% | |
GAGAGGGGAAGCTTCTCGAG+CGG | + | chr6_1:6167301-6167320 | Msa0871260:CDS | 60.0% | |
CTGGCTGGACTTCCACTCCT+TGG | - | chr6_1:6168050-6168069 | None:intergenic | 60.0% | |
GGAGTGGAAGTCCAGCCAGT+TGG | + | chr6_1:6168051-6168070 | Msa0871260:CDS | 60.0% | |
CACAGCCCCTTGCATACTGC+AGG | + | chr6_1:6168447-6168466 | Msa0871260:CDS | 60.0% | |
TGGGTGATCCCGTAGCCGTA+AGG | + | chr6_1:6168631-6168650 | Msa0871260:CDS | 60.0% | |
GGGTGATCCCGTAGCCGTAA+GGG | + | chr6_1:6168632-6168651 | Msa0871260:CDS | 60.0% | |
TGATCCCGTAGCCGTAAGGG+CGG | + | chr6_1:6168635-6168654 | Msa0871260:CDS | 60.0% | |
ATCAGCCGCCCTTACGGCTA+CGG | - | chr6_1:6168643-6168662 | None:intergenic | 60.0% | |
GAGAGGGGAAGCTTCTCGAG+CGG | + | chr6_1:6167301-6167320 | Msa0871260:CDS | 60.0% | |
CTGGCTGGACTTCCACTCCT+TGG | - | chr6_1:6168050-6168069 | None:intergenic | 60.0% | |
GGAGTGGAAGTCCAGCCAGT+TGG | + | chr6_1:6168051-6168070 | Msa0871260:CDS | 60.0% | |
CACAGCCCCTTGCATACTGC+AGG | + | chr6_1:6168447-6168466 | Msa0871260:CDS | 60.0% | |
TGGGTGATCCCGTAGCCGTA+AGG | + | chr6_1:6168631-6168650 | Msa0871260:CDS | 60.0% | |
GGGTGATCCCGTAGCCGTAA+GGG | + | chr6_1:6168632-6168651 | Msa0871260:CDS | 60.0% | |
TGATCCCGTAGCCGTAAGGG+CGG | + | chr6_1:6168635-6168654 | Msa0871260:CDS | 60.0% | |
ATCAGCCGCCCTTACGGCTA+CGG | - | chr6_1:6168643-6168662 | None:intergenic | 60.0% | |
CCTCGTCTTCGCCAACTGGC+TGG | - | chr6_1:6168065-6168084 | None:intergenic | 65.0% | |
CCAGCCAGTTGGCGAAGACG+AGG | + | chr6_1:6168062-6168081 | Msa0871260:CDS | 65.0% | |
TCAGCCGCCCTTACGGCTAC+GGG | - | chr6_1:6168642-6168661 | None:intergenic | 65.0% | |
CCTCGTCTTCGCCAACTGGC+TGG | - | chr6_1:6168065-6168084 | None:intergenic | 65.0% | |
CCAGCCAGTTGGCGAAGACG+AGG | + | chr6_1:6168062-6168081 | Msa0871260:CDS | 65.0% | |
TCAGCCGCCCTTACGGCTAC+GGG | - | chr6_1:6168642-6168661 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 6166873 | 6169121 | 6166873 | ID=Msa0871260;Name=Msa0871260 |
chr6_1 | mRNA | 6166873 | 6169121 | 6166873 | ID=Msa0871260-mRNA-1;Parent=Msa0871260;Name=Msa0871260-mRNA-1;_AED=0.88;_eAED=0.97;_QI=0|0|0|0.66|1|1|3|0|659 |
chr6_1 | exon | 6166873 | 6168287 | 6166873 | ID=Msa0871260-mRNA-1:exon:1846;Parent=Msa0871260-mRNA-1 |
chr6_1 | exon | 6168398 | 6168794 | 6168398 | ID=Msa0871260-mRNA-1:exon:1847;Parent=Msa0871260-mRNA-1 |
chr6_1 | exon | 6168954 | 6169121 | 6168954 | ID=Msa0871260-mRNA-1:exon:1848;Parent=Msa0871260-mRNA-1 |
chr6_1 | CDS | 6166873 | 6168287 | 6166873 | ID=Msa0871260-mRNA-1:cds;Parent=Msa0871260-mRNA-1 |
chr6_1 | CDS | 6168398 | 6168794 | 6168398 | ID=Msa0871260-mRNA-1:cds;Parent=Msa0871260-mRNA-1 |
chr6_1 | CDS | 6168954 | 6169121 | 6168954 | ID=Msa0871260-mRNA-1:cds;Parent=Msa0871260-mRNA-1 |
Gene Sequence |
Protein sequence |