AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1112210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112210 MtrunA17_Chr7g0247871 100.000 169 0 0 1 169 366 534 8.29e-118 343
Msa1112210 MtrunA17_Chr8g0348761 96.450 169 6 0 1 169 420 588 8.79e-113 332
Msa1112210 MtrunA17_Chr3g0104361 82.840 169 29 0 1 169 348 516 1.84e-102 303
Msa1112210 MtrunA17_Chr2g0290941 100.000 132 0 0 1 132 1 132 3.13e-94 270
Msa1112210 MtrunA17_Chr7g0241591 42.604 169 96 1 1 168 338 506 2.65e-41 144
Msa1112210 MtrunA17_Chr4g0013731 40.884 181 95 2 1 169 263 443 5.05e-37 132
Msa1112210 MtrunA17_Chr5g0429461 35.714 168 107 1 1 167 423 590 1.24e-33 124
Msa1112210 MtrunA17_Chr4g0064801 42.012 169 94 3 1 165 356 524 1.33e-33 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112210 AT4G00370.1 94.675 169 9 0 1 169 373 541 5.20e-113 332
Msa1112210 AT2G29650.3 79.882 169 34 0 1 169 232 400 3.00e-99 291
Msa1112210 AT2G29650.4 79.882 169 34 0 1 169 222 390 3.31e-99 291
Msa1112210 AT2G29650.1 79.882 169 34 0 1 169 344 512 7.09e-98 292
Msa1112210 AT2G38060.1 42.604 169 96 1 1 168 344 512 2.73e-38 137
Msa1112210 AT3G46980.6 39.286 168 101 1 1 167 116 283 6.07e-36 126
Msa1112210 AT3G46980.8 39.286 168 101 1 1 167 180 347 2.48e-35 126
Msa1112210 AT3G46980.2 39.286 168 101 1 1 167 180 347 2.48e-35 126
Msa1112210 AT3G46980.5 39.286 168 101 1 1 167 180 347 2.78e-35 126
Msa1112210 AT3G46980.7 39.286 168 101 1 1 167 180 347 2.78e-35 126
Msa1112210 AT3G46980.1 39.286 168 101 1 1 167 360 527 3.47e-34 126
Msa1112210 AT3G46980.3 39.286 168 101 1 1 167 360 527 3.68e-34 125
Msa1112210 AT3G46980.4 39.286 168 101 1 1 167 408 575 5.10e-34 125
Msa1112210 AT5G20380.2 40.351 171 96 4 1 166 392 561 5.21e-32 120
Msa1112210 AT5G20380.1 40.351 171 96 4 1 166 340 509 5.57e-32 120
Msa1112210 AT5G44370.1 37.569 181 101 2 1 169 252 432 2.05e-31 117
Msa1112210 AT2G38060.2 43.860 114 64 0 1 114 344 457 2.36e-24 99.0
Msa1112210 AT2G29650.2 74.545 55 14 0 1 55 344 398 1.19e-21 90.5

Find 152 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTATTATGCGTGCCTTTA+TGG 0.088357 7_3:+58182807 Msa1112210:five_prime_UTR
TTTAGATTCTTGGTGGTATA+TGG 0.202523 7_3:+58182680 Msa1112210:intron
TTCTTGGAATGACGTGTTTA+AGG 0.216470 7_3:+58184827 Msa1112210:CDS
GGTGTGCTTGCTGGCGTCTT+TGG 0.227575 7_3:+58184680 Msa1112210:CDS
GAAGCATCTGGTTTGCCTTT+TGG 0.244662 7_3:+58183434 Msa1112210:five_prime_UTR
AAGTTCAACCTCACTGAATC+TGG 0.253604 7_3:+58183909 Msa1112210:CDS
CTTATTATGCGTGCCTTTAT+GGG 0.279316 7_3:+58182808 Msa1112210:five_prime_UTR
CAATGTCACAAGAGTTTAAC+TGG 0.281775 7_3:+58182489 Msa1112210:five_prime_UTR
TTCACCACTTTCATTGCTTC+AGG 0.283006 7_3:+58181128 Msa1112210:five_prime_UTR
ACACCTATTGCTGCAAGAAT+TGG 0.294493 7_3:+58182772 Msa1112210:five_prime_UTR
CTGATGGCCACCCAAGGTTT+TGG 0.299035 7_3:-58183387 None:intergenic
CAGAAAAGGTATTTGCAAAA+AGG 0.300898 7_3:-58185197 None:intergenic
CCGAGATCCGGGTCATCTTT+TGG 0.301202 7_3:-58183619 None:intergenic
ATGGCCGTGTTTGCAAATAT+TGG 0.302731 7_3:+58183960 Msa1112210:CDS
TTCTATCAAAAGCACCAGTT+TGG 0.314560 7_3:+58183715 Msa1112210:five_prime_UTR
TCTCTCATTTCTGCCACAAT+TGG 0.328674 7_3:+58183748 Msa1112210:five_prime_UTR
GTCCAAGTGGATTCCAGTTT+CGG 0.337421 7_3:+58183282 Msa1112210:five_prime_UTR
TACCTTTCGAACAGTTGTTA+TGG 0.353371 7_3:-58184021 None:intergenic
TCAATTTCAGGGCGTATTGC+TGG 0.355168 7_3:+58184640 Msa1112210:intron
CATTTCAAATCAGTATTAGA+TGG 0.356536 7_3:+58185129 Msa1112210:three_prime_UTR
ATGCAATCAATCGGGTTTCT+AGG 0.357772 7_3:+58184199 Msa1112210:CDS
TCTGTTGCATTATACATAAT+AGG 0.358132 7_3:+58184852 Msa1112210:CDS
GATCTGCTTCTCTCCGAAAC+TGG 0.362948 7_3:-58183295 None:intergenic
CAAAAGGGTTACTCGCAATC+TGG 0.368248 7_3:-58181846 None:intergenic
CTCTCATTTCTGCCACAATT+GGG 0.368700 7_3:+58183749 Msa1112210:five_prime_UTR
TTGGATCCCTTGGAAGCATC+TGG 0.370421 7_3:+58183422 Msa1112210:five_prime_UTR
CTTGGACAGTATATTATTCA+TGG 0.377433 7_3:-58183266 None:intergenic
GGGAAGGTCGTGCTAGGATT+TGG 0.384068 7_3:+58182718 Msa1112210:five_prime_UTR
ACATCTGTTCGGACATTCCT+TGG 0.389351 7_3:+58183685 Msa1112210:five_prime_UTR
GGCTCTTATGTGTTCTTCCA+TGG 0.389923 7_3:+58183931 Msa1112210:CDS
AATACAGCAGGTGTGCTTGC+TGG 0.392626 7_3:+58184671 Msa1112210:CDS
AACCTCACCGATTCCCATAA+AGG 0.393601 7_3:-58182821 None:intergenic
TCTATCAAAAGCACCAGTTT+GGG 0.404421 7_3:+58183716 Msa1112210:five_prime_UTR
CAAAAGATGACCCGGATCTC+GGG 0.407606 7_3:+58183620 Msa1112210:five_prime_UTR
GCAATTCTATTGGAAGGAAA+TGG 0.413376 7_3:+58182027 Msa1112210:five_prime_UTR
ATACATCCCTTGCTATATAT+AGG 0.416319 7_3:-58184953 None:intergenic
GATGCCTACTTACTATAATC+AGG 0.418993 7_3:+58183794 Msa1112210:exon
AACAGGCGAAGCAATTCTAT+TGG 0.419363 7_3:+58182017 Msa1112210:five_prime_UTR
GTCTTTGGCACAGCTGCAAC+TGG 0.422764 7_3:+58184695 Msa1112210:CDS
TTAGATTCTTGGTGGTATAT+GGG 0.427769 7_3:+58182681 Msa1112210:intron
CACCTATTGCTGCAAGAATT+GGG 0.432187 7_3:+58182773 Msa1112210:five_prime_UTR
CCTTGGTTCTGTGGTAGGCT+TGG 0.435784 7_3:+58183345 Msa1112210:five_prime_UTR
ATGTACCTTGGTTCTGTGGT+AGG 0.451338 7_3:+58183340 Msa1112210:five_prime_UTR
TGGCAGATCATGCAATCAAT+CGG 0.452349 7_3:+58184190 Msa1112210:intron
CAATTTCAGGGCGTATTGCT+GGG 0.455105 7_3:+58184641 Msa1112210:intron
TGCTAGGATTTGGAGTTGTA+TGG 0.455824 7_3:+58182728 Msa1112210:five_prime_UTR
TTTCTTCTTTAGATTCTTGG+TGG 0.455978 7_3:+58182673 Msa1112210:intron
CCAAAAGATGACCCGGATCT+CGG 0.456410 7_3:+58183619 Msa1112210:five_prime_UTR
ATGCGTGCCTTTATGGGAAT+CGG 0.457296 7_3:+58182814 Msa1112210:five_prime_UTR
ATTGAACAAAGAGAAGTATA+CGG 0.459678 7_3:+58181886 Msa1112210:five_prime_UTR
ATTGTGCATGGCATGCAGTC+AGG 0.462532 7_3:+58184276 Msa1112210:CDS
TCGGATGCCTTCTCACAGTC+TGG 0.475944 7_3:+58184437 Msa1112210:CDS
CTCCGAAACTGGAATCCACT+TGG 0.479863 7_3:-58183284 None:intergenic
AGCCCAATTCTTGCAGCAAT+AGG 0.485315 7_3:-58182775 None:intergenic
GGCAGCAACTTCCTAAGCGC+TGG 0.486573 7_3:+58182070 Msa1112210:five_prime_UTR
TATTCCAATCATCAAGACAT+TGG 0.488754 7_3:+58184464 Msa1112210:CDS
ATATATTCTAACATGTGATA+AGG 0.492149 7_3:+58181025 Msa1112210:five_prime_UTR
ATTAAACCACTTATAGCCAT+TGG 0.496105 7_3:-58181092 None:intergenic
ACATAATAGGCACACTGGTA+TGG 0.496734 7_3:+58184865 Msa1112210:CDS
GTGGCATCTGATGAAGGAAC+AGG 0.503282 7_3:+58182000 Msa1112210:five_prime_UTR
CTGGGGCTATCTACTTACTC+AGG 0.504684 7_3:+58182550 Msa1112210:five_prime_UTR
TGGTCCAATGTCTTGATGAT+TGG 0.505896 7_3:-58184468 None:intergenic
TTTCCTCTACCCCGAGATCC+GGG 0.506435 7_3:-58183630 None:intergenic
CCCTCCAATATTTGCAAACA+CGG 0.508594 7_3:-58183964 None:intergenic
CATTATCAACATAGCACCAA+TGG 0.509318 7_3:+58181076 Msa1112210:five_prime_UTR
AGGCAAACCAGATGCTTCCA+AGG 0.509648 7_3:-58183429 None:intergenic
TTTGATAGAATTAATTTCCA+AGG 0.514333 7_3:-58183702 None:intergenic
CAGTTAAACTCTTGTGACAT+TGG 0.514473 7_3:-58182488 None:intergenic
GACAGTATATTATTCATGGC+GGG 0.516181 7_3:-58183262 None:intergenic
ATGGTTCGCTGGTATCTCCT+TGG 0.520372 7_3:+58182046 Msa1112210:five_prime_UTR
AAAGTGAGAAGTTAAAATCA+AGG 0.525786 7_3:-58185015 None:intergenic
TTCTTATCCAAAACCTTGGG+TGG 0.525807 7_3:+58183380 Msa1112210:five_prime_UTR
GAGATTATAAGAGCCCAAAC+TGG 0.527723 7_3:-58183729 None:intergenic
TGACCCGGATCTCGGGGTAG+AGG 0.528268 7_3:+58183627 Msa1112210:five_prime_UTR
TATATTATTCATGGCGGGCA+TGG 0.532851 7_3:-58183257 None:intergenic
AGGATCTATCACTTCAAAGA+GGG 0.533143 7_3:+58181800 Msa1112210:five_prime_UTR
GGTATATGGGCAGACAAACT+TGG 0.535648 7_3:+58182694 Msa1112210:five_prime_UTR
CAATTTCAAACTGTCATGCA+TGG 0.540340 7_3:-58180986 None:intergenic
GATCCTGTGGCATCTGATGA+AGG 0.540723 7_3:+58181994 Msa1112210:five_prime_UTR
ATATATTTCAAGTTTGATTG+TGG 0.540761 7_3:-58185277 None:intergenic
ATTACGATAAGCCAGCGCTT+AGG 0.542049 7_3:-58182081 None:intergenic
GGCAGATCATGCAATCAATC+GGG 0.542373 7_3:+58184191 Msa1112210:intron
ACCTTTGCTAACTAACGTGT+CGG 0.543679 7_3:-58183994 None:intergenic
TGGAGTTGTATGGTGGTCAA+TGG 0.544883 7_3:+58182738 Msa1112210:five_prime_UTR
GAATAAATGTTCCCCAATTG+TGG 0.546749 7_3:-58183761 None:intergenic
GTATATAGCGGCATGTACCT+TGG 0.546888 7_3:+58183328 Msa1112210:five_prime_UTR
GCGTATCGAAAACATCTGTT+CGG 0.547067 7_3:+58183674 Msa1112210:five_prime_UTR
GTTCGCTGGTATCTCCTTGG+TGG 0.550695 7_3:+58182049 Msa1112210:five_prime_UTR
CAAAGAGAAGTATACGGACT+AGG 0.551941 7_3:+58181892 Msa1112210:five_prime_UTR
CTTGGTGGGAAGGTCGTGCT+AGG 0.552485 7_3:+58182712 Msa1112210:five_prime_UTR
CGGCATGTACCTTGGTTCTG+TGG 0.552939 7_3:+58183336 Msa1112210:five_prime_UTR
TTCCATAACAACTGTTCGAA+AGG 0.559878 7_3:+58184019 Msa1112210:CDS
TCTCATTTCTGCCACAATTG+GGG 0.559881 7_3:+58183750 Msa1112210:five_prime_UTR
AAATGTATATCAGTTAAGAA+AGG 0.560962 7_3:+58181780 Msa1112210:five_prime_UTR
ATGCACAATACTGCCATGGC+GGG 0.561244 7_3:-58184262 None:intergenic
TGAAGAGTGTGATGATGTAA+AGG 0.564550 7_3:+58184921 Msa1112210:exon
ATGTATAGAGAGAGATACCA+TGG 0.565302 7_3:+58184970 Msa1112210:three_prime_UTR
GGCGAAGCAATTCTATTGGA+AGG 0.565577 7_3:+58182021 Msa1112210:five_prime_UTR
GAACATTTATTCTATTAACA+TGG 0.567906 7_3:+58183772 Msa1112210:five_prime_UTR
CGCCATGGCAGTATTGTGCA+TGG 0.568359 7_3:+58184264 Msa1112210:CDS
AGTTCAACCTCACTGAATCT+GGG 0.568787 7_3:+58183910 Msa1112210:CDS
ATTGGAAGGAAATGGTTCGC+TGG 0.569594 7_3:+58182035 Msa1112210:five_prime_UTR
AGAAGTTAAAATCAAGGCCA+CGG 0.579729 7_3:-58185009 None:intergenic
CCATGTCAAAACACCCGCCA+TGG 0.580413 7_3:+58184249 Msa1112210:CDS
GGCAGACAAACTTGGTGGGA+AGG 0.582949 7_3:+58182702 Msa1112210:five_prime_UTR
GCCGTGTTTGCAAATATTGG+AGG 0.583856 7_3:+58183963 Msa1112210:CDS
CTGGGACTATCGAATACAGC+AGG 0.588965 7_3:+58184659 Msa1112210:CDS
ATAACCTGATTATAGTAAGT+AGG 0.589115 7_3:-58183798 None:intergenic
CCAAATGAGTAAAACACTGA+TGG 0.590761 7_3:-58183403 None:intergenic
GAAAGTGGTGAAGCTTCTGT+TGG 0.590828 7_3:-58181117 None:intergenic
ATAGCACCAATGGCTATAAG+TGG 0.591240 7_3:+58181086 Msa1112210:five_prime_UTR
GGCAAACCAGATGCTTCCAA+GGG 0.591797 7_3:-58183428 None:intergenic
GTTCCTTCATCAGATGCCAC+AGG 0.595225 7_3:-58181997 None:intergenic
AATATTTGCAAACACGGCCA+TGG 0.597293 7_3:-58183958 None:intergenic
AACTGGAACAGTGCAACAGT+TGG 0.597654 7_3:+58182506 Msa1112210:five_prime_UTR
TGTGTGGCCTATATATAGCA+AGG 0.599611 7_3:+58184946 Msa1112210:three_prime_UTR
TGAACCTGAAGCAATGAAAG+TGG 0.603403 7_3:-58181132 None:intergenic
GAGAACTGTATCAGTGAGAG+TGG 0.604888 7_3:-58181048 None:intergenic
TGTTCTTCCATGGTTAACCA+TGG 0.609195 7_3:+58183941 Msa1112210:CDS
TTTGCATCTAAAGTAAGCAA+AGG 0.609849 7_3:+58185066 Msa1112210:three_prime_UTR
CTGCACATAAAATTTGACAC+AGG 0.612237 7_3:+58185217 Msa1112210:three_prime_UTR
TGCCATGCACAATACTGCCA+TGG 0.612350 7_3:-58184266 None:intergenic
AAGGATCTATCACTTCAAAG+AGG 0.613342 7_3:+58181799 Msa1112210:five_prime_UTR
ATGTTCTTATAAACTGAGTG+TGG 0.623337 7_3:-58185169 None:intergenic
TATGGGCAGACAAACTTGGT+GGG 0.623534 7_3:+58182698 Msa1112210:five_prime_UTR
TAGATGCAAACTCACTTCAG+AGG 0.627690 7_3:-58185053 None:intergenic
ATATGGGCAGACAAACTTGG+TGG 0.628033 7_3:+58182697 Msa1112210:five_prime_UTR
TGAATAATATACTGTCCAAG+TGG 0.631779 7_3:+58183269 Msa1112210:five_prime_UTR
TAGGATTTGGAGTTGTATGG+TGG 0.635420 7_3:+58182731 Msa1112210:five_prime_UTR
TAGCTCACCAAAAGATGACC+CGG 0.637431 7_3:+58183612 Msa1112210:five_prime_UTR
AACACGGCCATGGTTAACCA+TGG 0.638076 7_3:-58183948 None:intergenic
ATTATACATAATAGGCACAC+TGG 0.640114 7_3:+58184860 Msa1112210:CDS
AAAAGATGACCCGGATCTCG+GGG 0.643756 7_3:+58183621 Msa1112210:five_prime_UTR
GGATCTATCACTTCAAAGAG+GGG 0.643907 7_3:+58181801 Msa1112210:five_prime_UTR
ATAAAGACCAGACTGTGAGA+AGG 0.653878 7_3:-58184444 None:intergenic
CCGTGTTTGCAAATATTGGA+GGG 0.658652 7_3:+58183964 Msa1112210:CDS
TGTTTGCAAATATTGGAGGG+TGG 0.661112 7_3:+58183967 Msa1112210:CDS
GCACGCATAATAAGCAAACA+AGG 0.665091 7_3:-58182799 None:intergenic
AAAACACTGATGGCCACCCA+AGG 0.665588 7_3:-58183393 None:intergenic
ACTGGATACATACTTCAAAG+AGG 0.666637 7_3:+58184713 Msa1112210:CDS
GTGTGGCCTATATATAGCAA+GGG 0.666762 7_3:+58184947 Msa1112210:three_prime_UTR
GGACAGTATATTATTCATGG+CGG 0.671998 7_3:-58183263 None:intergenic
ATATGACATTGATGAAACGA+AGG 0.676264 7_3:+58181969 Msa1112210:five_prime_UTR
TGCCTTTATGGGAATCGGTG+AGG 0.677573 7_3:+58182819 Msa1112210:five_prime_UTR
TCACTTTCGCTAGTATATAG+CGG 0.679969 7_3:+58183316 Msa1112210:five_prime_UTR
TTAGGAAGTTGCTGCCACCA+AGG 0.680539 7_3:-58182063 None:intergenic
TGAAACGAAGGTAGATCCTG+TGG 0.681518 7_3:+58181981 Msa1112210:five_prime_UTR
TGATGATGTAAAGGAATGTG+TGG 0.694227 7_3:+58184930 Msa1112210:three_prime_UTR
CATGCACAATACTGCCATGG+CGG 0.706051 7_3:-58184263 None:intergenic
CCAAGCCTACCACAGAACCA+AGG 0.711808 7_3:-58183345 None:intergenic
AAATTACTCACAGCATAACG+TGG 0.722801 7_3:-58184488 None:intergenic
ATAAGAGCCCAGATTCAGTG+AGG 0.769613 7_3:-58183917 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTGTAAAAAAAAAAAAATTA+TGG - chr7_3:58184414-58184433 None:intergenic 10.0%
!!! CATAATTTTTTTTTTTTTAC+AGG + chr7_3:58184412-58184431 Msa1112210:intron 10.0%
!! TTTCAAATAAAAAAATTTGG+TGG + chr7_3:58181229-58181248 Msa1112210:intron 15.0%
!! AAAAATTAATACAAAAAGAC+AGG - chr7_3:58181325-58181344 None:intergenic 15.0%
!!! TTGATATTTTGATAAAACTA+TGG + chr7_3:58181493-58181512 Msa1112210:intron 15.0%
!! CTTAATATATATGGATAATA+TGG + chr7_3:58184170-58184189 Msa1112210:intron 15.0%
!! AAAAAATTATGGTTTGAATT+AGG - chr7_3:58184403-58184422 None:intergenic 15.0%
!! ATATATTCTAACATGTGATA+AGG + chr7_3:58181025-58181044 Msa1112210:five_prime_UTR 20.0%
!! TAATACAATTCATAAAATGC+TGG - chr7_3:58181258-58181277 None:intergenic 20.0%
!!! CAAAGCATTGATATTATTTT+AGG + chr7_3:58181586-58181605 Msa1112210:intron 20.0%
!! TACAATCATATTTACAAATG+AGG - chr7_3:58181738-58181757 None:intergenic 20.0%
!! AAATGTATATCAGTTAAGAA+AGG + chr7_3:58181780-58181799 Msa1112210:five_prime_UTR 20.0%
!! ATATGAAATCAATTCTTGTT+AGG - chr7_3:58182611-58182630 None:intergenic 20.0%
!! ATAACATTGTTATGTTATGA+TGG + chr7_3:58182646-58182665 Msa1112210:intron 20.0%
!!! TTTTTTCTTCTTTAGATTCT+TGG + chr7_3:58182670-58182689 Msa1112210:intron 20.0%
!!! AGAATTATTTTGTGTTAAGA+GGG - chr7_3:58183214-58183233 None:intergenic 20.0%
!!! TAGAATTATTTTGTGTTAAG+AGG - chr7_3:58183215-58183234 None:intergenic 20.0%
!!! AATTCTAACTATTTGTTTTC+AGG + chr7_3:58183228-58183247 Msa1112210:intron 20.0%
!!! ATTCTAACTATTTGTTTTCA+GGG + chr7_3:58183229-58183248 Msa1112210:intron 20.0%
!! ACTATTCATGATATGTTAAA+TGG + chr7_3:58183530-58183549 Msa1112210:intron 20.0%
!! TTTGATAGAATTAATTTCCA+AGG - chr7_3:58183705-58183724 None:intergenic 20.0%
!! GAACATTTATTCTATTAACA+TGG + chr7_3:58183772-58183791 Msa1112210:five_prime_UTR 20.0%
!! AAATGTATTATACAAAGCAT+AGG - chr7_3:58183827-58183846 None:intergenic 20.0%
!! TATTCTGCTCTTAATATATA+TGG + chr7_3:58184161-58184180 Msa1112210:intron 20.0%
!!! TTTTTTTTTTTTACAGGGAT+CGG + chr7_3:58184418-58184437 Msa1112210:intron 20.0%
!! CTTTGCAATTTATATATCAT+TGG + chr7_3:58184774-58184793 Msa1112210:intron 20.0%
!!! TATGGAATATATTTTCTACT+GGG + chr7_3:58184883-58184902 Msa1112210:CDS 20.0%
!!! ATATATTTCAAGTTTGATTG+TGG - chr7_3:58185280-58185299 None:intergenic 20.0%
! TAGTGAAAATTAAAGTGATG+AGG - chr7_3:58181162-58181181 None:intergenic 25.0%
!!! ATTTTAGGACTTGTATAGTT+TGG + chr7_3:58181601-58181620 Msa1112210:intron 25.0%
!!! GGATCACTATATTTTAAACT+AGG + chr7_3:58181662-58181681 Msa1112210:intron 25.0%
! TTGTAGTAACTCTTTGATAT+TGG + chr7_3:58181753-58181772 Msa1112210:intron 25.0%
!! ATTGAACAAAGAGAAGTATA+CGG + chr7_3:58181886-58181905 Msa1112210:five_prime_UTR 25.0%
! TCCTTCATATTGTAATATAC+AGG + chr7_3:58182442-58182461 Msa1112210:intron 25.0%
! ACCTGTATATTACAATATGA+AGG - chr7_3:58182446-58182465 None:intergenic 25.0%
! AGAAAAAAGATGACTGAATT+AGG - chr7_3:58182532-58182551 None:intergenic 25.0%
!!! TAATTCAGTCATCTTTTTTC+TGG + chr7_3:58182531-58182550 Msa1112210:five_prime_UTR 25.0%
!!! AATTCAGTCATCTTTTTTCT+GGG + chr7_3:58182532-58182551 Msa1112210:five_prime_UTR 25.0%
! TAACATAACAATGTTATGCT+AGG - chr7_3:58182643-58182662 None:intergenic 25.0%
! TTCATAGCAAAACTGATAAT+TGG - chr7_3:58182926-58182945 None:intergenic 25.0%
!! AAGATAGTTTCTCTTTTGAA+TGG + chr7_3:58183009-58183028 Msa1112210:intron 25.0%
! TAACATATAAATACAGCTTG+TGG - chr7_3:58183091-58183110 None:intergenic 25.0%
! TTGTAAGCAAGTTAGTTATA+TGG + chr7_3:58183131-58183150 Msa1112210:intron 25.0%
! GTAGATTTCATCGAAATTAA+GGG - chr7_3:58183482-58183501 None:intergenic 25.0%
! AGTAGATTTCATCGAAATTA+AGG - chr7_3:58183483-58183502 None:intergenic 25.0%
! ACATATCATGAATAGTGATA+TGG - chr7_3:58183526-58183545 None:intergenic 25.0%
! TTCATGATATGTTAAATGGA+AGG + chr7_3:58183534-58183553 Msa1112210:intron 25.0%
! TCATGATATGTTAAATGGAA+GGG + chr7_3:58183535-58183554 Msa1112210:intron 25.0%
! ATAACCTGATTATAGTAAGT+AGG - chr7_3:58183801-58183820 None:intergenic 25.0%
!!! AAATTAGCTTGTTGATTCAA+TGG - chr7_3:58183870-58183889 None:intergenic 25.0%
!!! AGCTAATTTGTCATTTTATC+AGG + chr7_3:58183881-58183900 Msa1112210:intron 25.0%
! ATTTGTAATAGTTGTTGATC+TGG - chr7_3:58184079-58184098 None:intergenic 25.0%
! ATTTGAGGAATTCAAACTAA+AGG - chr7_3:58184323-58184342 None:intergenic 25.0%
!! AGTTTGAATTCCTCAAATTT+TGG + chr7_3:58184325-58184344 Msa1112210:intron 25.0%
! AAATTATGGTTTGAATTAGG+TGG - chr7_3:58184400-58184419 None:intergenic 25.0%
!! TATATGTGATTTTTCATTGC+AGG + chr7_3:58184804-58184823 Msa1112210:intron 25.0%
! TCTGTTGCATTATACATAAT+AGG + chr7_3:58184852-58184871 Msa1112210:CDS 25.0%
!! GTATGGAATATATTTTCTAC+TGG + chr7_3:58184882-58184901 Msa1112210:CDS 25.0%
!! ATGGAATATATTTTCTACTG+GGG + chr7_3:58184884-58184903 Msa1112210:CDS 25.0%
! AAAGTGAGAAGTTAAAATCA+AGG - chr7_3:58185018-58185037 None:intergenic 25.0%
! CATTTCAAATCAGTATTAGA+TGG + chr7_3:58185129-58185148 Msa1112210:three_prime_UTR 25.0%
!!! AGAAAAGGTATTTGCAAAAA+GGG - chr7_3:58185199-58185218 None:intergenic 25.0%
!! TCAAATTTTATGTGCAGAAA+AGG - chr7_3:58185214-58185233 None:intergenic 25.0%
!! AATAGACAATGTTTTACATG+TGG - chr7_3:58185249-58185268 None:intergenic 25.0%
ATTAAACCACTTATAGCCAT+TGG - chr7_3:58181095-58181114 None:intergenic 30.0%
! ATTTTCCCACAAACTTTTCA+TGG + chr7_3:58181398-58181417 Msa1112210:intron 30.0%
TCTTACCATGAAAAGTTTGT+GGG - chr7_3:58181406-58181425 None:intergenic 30.0%
TTGTGCGATATTTGTTTATG+TGG + chr7_3:58181463-58181482 Msa1112210:intron 30.0%
TCCACATAAACCAAATTAGA+GGG - chr7_3:58181645-58181664 None:intergenic 30.0%
ATCCACATAAACCAAATTAG+AGG - chr7_3:58181646-58181665 None:intergenic 30.0%
! ACTAGGCTTAAATGTAGTTT+TGG + chr7_3:58181679-58181698 Msa1112210:intron 30.0%
!!! GACTTCTACTTTTTGCAAAA+GGG - chr7_3:58181864-58181883 None:intergenic 30.0%
!!! TGACTTCTACTTTTTGCAAA+AGG - chr7_3:58181865-58181884 None:intergenic 30.0%
ATATGACATTGATGAAACGA+AGG + chr7_3:58181969-58181988 Msa1112210:five_prime_UTR 30.0%
! AGCTTTTCTTTTATGCAACA+TGG + chr7_3:58182116-58182135 Msa1112210:five_prime_UTR 30.0%
CTATGTGTACAATGTATGTT+TGG + chr7_3:58182180-58182199 Msa1112210:intron 30.0%
TGTACAATGTATGTTTGGAT+TGG + chr7_3:58182185-58182204 Msa1112210:intron 30.0%
AAGATATATGACAGTGTGTT+TGG - chr7_3:58182331-58182350 None:intergenic 30.0%
! TACATTCGAAATTTGAGACA+TGG - chr7_3:58182362-58182381 None:intergenic 30.0%
!!! ATTCAGTCATCTTTTTTCTG+GGG + chr7_3:58182533-58182552 Msa1112210:five_prime_UTR 30.0%
TTTCTTCTTTAGATTCTTGG+TGG + chr7_3:58182673-58182692 Msa1112210:intron 30.0%
! TTTAGATTCTTGGTGGTATA+TGG + chr7_3:58182680-58182699 Msa1112210:intron 30.0%
! TTAGATTCTTGGTGGTATAT+GGG + chr7_3:58182681-58182700 Msa1112210:intron 30.0%
! GTTTTGCATAACACAAAAGA+TGG - chr7_3:58182904-58182923 None:intergenic 30.0%
AAGAGAAACTATCTTCGATT+TGG - chr7_3:58183004-58183023 None:intergenic 30.0%
TTAGTAAGCTATACTCTACA+CGG - chr7_3:58183050-58183069 None:intergenic 30.0%
CTTGGACAGTATATTATTCA+TGG - chr7_3:58183269-58183288 None:intergenic 30.0%
TGAATAATATACTGTCCAAG+TGG + chr7_3:58183269-58183288 Msa1112210:five_prime_UTR 30.0%
! CTTTTCTTATCCAAAACCTT+GGG + chr7_3:58183377-58183396 Msa1112210:five_prime_UTR 30.0%
!! ACTTACTTTTCTCAACCAAA+AGG - chr7_3:58183452-58183471 None:intergenic 30.0%
CATGATATGTTAAATGGAAG+GGG + chr7_3:58183536-58183555 Msa1112210:intron 30.0%
GACAATATTTCAGTAACAAG+TGG - chr7_3:58184053-58184072 None:intergenic 30.0%
!! CATAAAAGTGCCAAAATTTG+AGG - chr7_3:58184338-58184357 None:intergenic 30.0%
CATATGCAAACATGTTGTAT+TGG - chr7_3:58184361-58184380 None:intergenic 30.0%
TATTCCAATCATCAAGACAT+TGG + chr7_3:58184464-58184483 Msa1112210:CDS 30.0%
! CTATGAAATTTTACTGGTCA+TGG - chr7_3:58184526-58184545 None:intergenic 30.0%
ATTATACATAATAGGCACAC+TGG + chr7_3:58184860-58184879 Msa1112210:CDS 30.0%
! ATACATCCCTTGCTATATAT+AGG - chr7_3:58184956-58184975 None:intergenic 30.0%
! TTTGCATCTAAAGTAAGCAA+AGG + chr7_3:58185066-58185085 Msa1112210:three_prime_UTR 30.0%
ATGTTCTTATAAACTGAGTG+TGG - chr7_3:58185172-58185191 None:intergenic 30.0%
!! AAAAGGTATTTGCAAAAAGG+GGG - chr7_3:58185197-58185216 None:intergenic 30.0%
!! GAAAAGGTATTTGCAAAAAG+GGG - chr7_3:58185198-58185217 None:intergenic 30.0%
!! CAGAAAAGGTATTTGCAAAA+AGG - chr7_3:58185200-58185219 None:intergenic 30.0%
CAATTTCAAACTGTCATGCA+TGG - chr7_3:58180989-58181008 None:intergenic 35.0%
CATTATCAACATAGCACCAA+TGG + chr7_3:58181076-58181095 Msa1112210:five_prime_UTR 35.0%
CTCTTACCATGAAAAGTTTG+TGG - chr7_3:58181407-58181426 None:intergenic 35.0%
ATATCGCACAATCCATACAA+GGG - chr7_3:58181454-58181473 None:intergenic 35.0%
AATATCGCACAATCCATACA+AGG - chr7_3:58181455-58181474 None:intergenic 35.0%
! ACCCTCTAATTTGGTTTATG+TGG + chr7_3:58181641-58181660 Msa1112210:intron 35.0%
AGTAACTCTTTGATATTGGC+AGG + chr7_3:58181757-58181776 Msa1112210:intron 35.0%
AAGGATCTATCACTTCAAAG+AGG + chr7_3:58181799-58181818 Msa1112210:five_prime_UTR 35.0%
AGGATCTATCACTTCAAAGA+GGG + chr7_3:58181800-58181819 Msa1112210:five_prime_UTR 35.0%
!!! GAATTTTTAGTGTCATCTGG+TGG + chr7_3:58181823-58181842 Msa1112210:five_prime_UTR 35.0%
GCAATTCTATTGGAAGGAAA+TGG + chr7_3:58182027-58182046 Msa1112210:five_prime_UTR 35.0%
ACCAAGATAAGATACTCACA+CGG - chr7_3:58182143-58182162 None:intergenic 35.0%
!! ATGTATGTTTGGATTGGTGA+CGG + chr7_3:58182191-58182210 Msa1112210:intron 35.0%
AGAATCACAGTGCAAAATCA+CGG - chr7_3:58182290-58182309 None:intergenic 35.0%
CAGTTAAACTCTTGTGACAT+TGG - chr7_3:58182491-58182510 None:intergenic 35.0%
CAATGTCACAAGAGTTTAAC+TGG + chr7_3:58182489-58182508 Msa1112210:five_prime_UTR 35.0%
CTTATTATGCGTGCCTTTAT+GGG + chr7_3:58182808-58182827 Msa1112210:five_prime_UTR 35.0%
GTTTCCAGTAACTAGTCATA+TGG + chr7_3:58182869-58182888 Msa1112210:intron 35.0%
! CTAACCATATGACTAGTTAC+TGG - chr7_3:58182876-58182895 None:intergenic 35.0%
GACAGTATATTATTCATGGC+GGG - chr7_3:58183265-58183284 None:intergenic 35.0%
GGACAGTATATTATTCATGG+CGG - chr7_3:58183266-58183285 None:intergenic 35.0%
TCACTTTCGCTAGTATATAG+CGG + chr7_3:58183316-58183335 Msa1112210:five_prime_UTR 35.0%
!!! CCAAGGTTTTGGATAAGAAA+AGG - chr7_3:58183379-58183398 None:intergenic 35.0%
! CCTTTTCTTATCCAAAACCT+TGG + chr7_3:58183376-58183395 Msa1112210:five_prime_UTR 35.0%
CCAAATGAGTAAAACACTGA+TGG - chr7_3:58183406-58183425 None:intergenic 35.0%
! CCATCAGTGTTTTACTCATT+TGG + chr7_3:58183403-58183422 Msa1112210:five_prime_UTR 35.0%
! TTTTACTCATTTGGATCCCT+TGG + chr7_3:58183412-58183431 Msa1112210:five_prime_UTR 35.0%
! ACTCCTCTTTTGTTCTTTCT+TGG + chr7_3:58183560-58183579 Msa1112210:intron 35.0%
TTGCCAAGAAAGAACAAAAG+AGG - chr7_3:58183566-58183585 None:intergenic 35.0%
AGTAAACTCATTTCCTTTCC+AGG + chr7_3:58183585-58183604 Msa1112210:intron 35.0%
GAAAAAAAGCTCATCCTTGA+AGG + chr7_3:58183649-58183668 Msa1112210:five_prime_UTR 35.0%
!! TTCTATCAAAAGCACCAGTT+TGG + chr7_3:58183715-58183734 Msa1112210:five_prime_UTR 35.0%
!! TCTATCAAAAGCACCAGTTT+GGG + chr7_3:58183716-58183735 Msa1112210:five_prime_UTR 35.0%
GAATAAATGTTCCCCAATTG+TGG - chr7_3:58183764-58183783 None:intergenic 35.0%
GATGCCTACTTACTATAATC+AGG + chr7_3:58183794-58183813 Msa1112210:exon 35.0%
TTCCATAACAACTGTTCGAA+AGG + chr7_3:58184019-58184038 Msa1112210:CDS 35.0%
TACCTTTCGAACAGTTGTTA+TGG - chr7_3:58184024-58184043 None:intergenic 35.0%
TTAACAGAATGCCGTATAGA+AGG + chr7_3:58184106-58184125 Msa1112210:intron 35.0%
CCGAACAATTTCCTTCTATA+CGG - chr7_3:58184120-58184139 None:intergenic 35.0%
CCGTATAGAAGGAAATTGTT+CGG + chr7_3:58184117-58184136 Msa1112210:intron 35.0%
AAATTACTCACAGCATAACG+TGG - chr7_3:58184491-58184510 None:intergenic 35.0%
! CACGCACTATGAAATTTTAC+TGG - chr7_3:58184532-58184551 None:intergenic 35.0%
TTTCATAGTGCGTGAAATTC+TGG + chr7_3:58184538-58184557 Msa1112210:intron 35.0%
! CTGAGTGATGACTTGTATAA+TGG - chr7_3:58184572-58184591 None:intergenic 35.0%
ACTGGATACATACTTCAAAG+AGG + chr7_3:58184713-58184732 Msa1112210:CDS 35.0%
AAATGAATGTGGAGAACTCT+CGG - chr7_3:58184740-58184759 None:intergenic 35.0%
AGAGTTCTCCACATTCATTT+CGG + chr7_3:58184740-58184759 Msa1112210:intron 35.0%
TGTAAACTCCGAAATGAATG+TGG - chr7_3:58184751-58184770 None:intergenic 35.0%
! GATTTTTCATTGCAGGTTCT+TGG + chr7_3:58184811-58184830 Msa1112210:intron 35.0%
TTCTTGGAATGACGTGTTTA+AGG + chr7_3:58184827-58184846 Msa1112210:CDS 35.0%
! TGAAGAGTGTGATGATGTAA+AGG + chr7_3:58184921-58184940 Msa1112210:exon 35.0%
! TGATGATGTAAAGGAATGTG+TGG + chr7_3:58184930-58184949 Msa1112210:three_prime_UTR 35.0%
ATGTATAGAGAGAGATACCA+TGG + chr7_3:58184970-58184989 Msa1112210:three_prime_UTR 35.0%
!!! GTTTTTGGTGAAAACTTCCA+TGG - chr7_3:58184990-58185009 None:intergenic 35.0%
AGAAGTTAAAATCAAGGCCA+CGG - chr7_3:58185012-58185031 None:intergenic 35.0%
CTGCACATAAAATTTGACAC+AGG + chr7_3:58185217-58185236 Msa1112210:three_prime_UTR 35.0%
! GACAATGTTTTACATGTGGA+AGG - chr7_3:58185245-58185264 None:intergenic 35.0%
ATAGCACCAATGGCTATAAG+TGG + chr7_3:58181086-58181105 Msa1112210:five_prime_UTR 40.0%
TTCACCACTTTCATTGCTTC+AGG + chr7_3:58181128-58181147 Msa1112210:five_prime_UTR 40.0%
TGAACCTGAAGCAATGAAAG+TGG - chr7_3:58181135-58181154 None:intergenic 40.0%
CCAAATTAGAGGGTTTCAAG+AGG - chr7_3:58181635-58181654 None:intergenic 40.0%
CCTCTTGAAACCCTCTAATT+TGG + chr7_3:58181632-58181651 Msa1112210:intron 40.0%
ATCGCGAATCGGTGAAAATA+GGG - chr7_3:58181707-58181726 None:intergenic 40.0%
AATCGCGAATCGGTGAAAAT+AGG - chr7_3:58181708-58181727 None:intergenic 40.0%
AGGCAACTAAAATCGCGAAT+CGG - chr7_3:58181718-58181737 None:intergenic 40.0%
GGATCTATCACTTCAAAGAG+GGG + chr7_3:58181801-58181820 Msa1112210:five_prime_UTR 40.0%
!!! GGGGAATTTTTAGTGTCATC+TGG + chr7_3:58181820-58181839 Msa1112210:five_prime_UTR 40.0%
! CAAAGAGAAGTATACGGACT+AGG + chr7_3:58181892-58181911 Msa1112210:five_prime_UTR 40.0%
AACAGGCGAAGCAATTCTAT+TGG + chr7_3:58182017-58182036 Msa1112210:five_prime_UTR 40.0%
ACCGTGTGAGTATCTTATCT+TGG + chr7_3:58182139-58182158 Msa1112210:intron 40.0%
! TGACAGTGTGTTTGGATTAG+CGG - chr7_3:58182323-58182342 None:intergenic 40.0%
TTACTCAGGTGTGATTGCTA+TGG + chr7_3:58182564-58182583 Msa1112210:intron 40.0%
TACTCAGGTGTGATTGCTAT+GGG + chr7_3:58182565-58182584 Msa1112210:intron 40.0%
! TGCTAGGATTTGGAGTTGTA+TGG + chr7_3:58182728-58182747 Msa1112210:five_prime_UTR 40.0%
! TAGGATTTGGAGTTGTATGG+TGG + chr7_3:58182731-58182750 Msa1112210:five_prime_UTR 40.0%
ACACCTATTGCTGCAAGAAT+TGG + chr7_3:58182772-58182791 Msa1112210:five_prime_UTR 40.0%
CACCTATTGCTGCAAGAATT+GGG + chr7_3:58182773-58182792 Msa1112210:five_prime_UTR 40.0%
GCACGCATAATAAGCAAACA+AGG - chr7_3:58182802-58182821 None:intergenic 40.0%
GCTTATTATGCGTGCCTTTA+TGG + chr7_3:58182807-58182826 Msa1112210:five_prime_UTR 40.0%
!! TATATTATTCATGGCGGGCA+TGG - chr7_3:58183260-58183279 None:intergenic 40.0%
TTCTTATCCAAAACCTTGGG+TGG + chr7_3:58183380-58183399 Msa1112210:five_prime_UTR 40.0%
AAAAAGCTCATCCTTGAAGG+CGG + chr7_3:58183652-58183671 Msa1112210:five_prime_UTR 40.0%
GCGTATCGAAAACATCTGTT+CGG + chr7_3:58183674-58183693 Msa1112210:five_prime_UTR 40.0%
GAGATTATAAGAGCCCAAAC+TGG - chr7_3:58183732-58183751 None:intergenic 40.0%
TCTCTCATTTCTGCCACAAT+TGG + chr7_3:58183748-58183767 Msa1112210:five_prime_UTR 40.0%
CTCTCATTTCTGCCACAATT+GGG + chr7_3:58183749-58183768 Msa1112210:five_prime_UTR 40.0%
TCTCATTTCTGCCACAATTG+GGG + chr7_3:58183750-58183769 Msa1112210:five_prime_UTR 40.0%
AAGTTCAACCTCACTGAATC+TGG + chr7_3:58183909-58183928 Msa1112210:CDS 40.0%
AGTTCAACCTCACTGAATCT+GGG + chr7_3:58183910-58183929 Msa1112210:CDS 40.0%
TGTTCTTCCATGGTTAACCA+TGG + chr7_3:58183941-58183960 Msa1112210:CDS 40.0%
AATATTTGCAAACACGGCCA+TGG - chr7_3:58183961-58183980 None:intergenic 40.0%
ATGGCCGTGTTTGCAAATAT+TGG + chr7_3:58183960-58183979 Msa1112210:CDS 40.0%
CCCTCCAATATTTGCAAACA+CGG - chr7_3:58183967-58183986 None:intergenic 40.0%
CCGTGTTTGCAAATATTGGA+GGG + chr7_3:58183964-58183983 Msa1112210:CDS 40.0%
TGTTTGCAAATATTGGAGGG+TGG + chr7_3:58183967-58183986 Msa1112210:CDS 40.0%
ACCTTTGCTAACTAACGTGT+CGG - chr7_3:58183997-58184016 None:intergenic 40.0%
TGGCAGATCATGCAATCAAT+CGG + chr7_3:58184190-58184209 Msa1112210:intron 40.0%
ATGCAATCAATCGGGTTTCT+AGG + chr7_3:58184199-58184218 Msa1112210:CDS 40.0%
AGTTGCGTAAGAAAAAAGGC+AGG - chr7_3:58184226-58184245 None:intergenic 40.0%
GCTCAGTTGCGTAAGAAAAA+AGG - chr7_3:58184230-58184249 None:intergenic 40.0%
GAATTAGGTGGCTGCATATA+TGG - chr7_3:58184388-58184407 None:intergenic 40.0%
ATAAAGACCAGACTGTGAGA+AGG - chr7_3:58184447-58184466 None:intergenic 40.0%
! TGGTCCAATGTCTTGATGAT+TGG - chr7_3:58184471-58184490 None:intergenic 40.0%
TGCTCACGAGTTTCAATTTC+AGG + chr7_3:58184628-58184647 Msa1112210:intron 40.0%
GCTCACGAGTTTCAATTTCA+GGG + chr7_3:58184629-58184648 Msa1112210:intron 40.0%
ACATAATAGGCACACTGGTA+TGG + chr7_3:58184865-58184884 Msa1112210:CDS 40.0%
TGTGTGGCCTATATATAGCA+AGG + chr7_3:58184946-58184965 Msa1112210:three_prime_UTR 40.0%
GTGTGGCCTATATATAGCAA+GGG + chr7_3:58184947-58184966 Msa1112210:three_prime_UTR 40.0%
! GAAGTTTTCACCAAAAACCG+TGG + chr7_3:58184992-58185011 Msa1112210:three_prime_UTR 40.0%
! AAAATCAAGGCCACGGTTTT+TGG - chr7_3:58185005-58185024 None:intergenic 40.0%
TAGATGCAAACTCACTTCAG+AGG - chr7_3:58185056-58185075 None:intergenic 40.0%
GAGAACTGTATCAGTGAGAG+TGG - chr7_3:58181051-58181070 None:intergenic 45.0%
GAAAGTGGTGAAGCTTCTGT+TGG - chr7_3:58181120-58181139 None:intergenic 45.0%
CATACAAGGGTCATCAGCAT+TGG - chr7_3:58181441-58181460 None:intergenic 45.0%
CAATGCTGATGACCCTTGTA+TGG + chr7_3:58181439-58181458 Msa1112210:intron 45.0%
TCGCGAATCGGTGAAAATAG+GGG - chr7_3:58181706-58181725 None:intergenic 45.0%
CAAAAGGGTTACTCGCAATC+TGG - chr7_3:58181849-58181868 None:intergenic 45.0%
TGAAACGAAGGTAGATCCTG+TGG + chr7_3:58181981-58182000 Msa1112210:five_prime_UTR 45.0%
GGCGAAGCAATTCTATTGGA+AGG + chr7_3:58182021-58182040 Msa1112210:five_prime_UTR 45.0%
ATTGGAAGGAAATGGTTCGC+TGG + chr7_3:58182035-58182054 Msa1112210:five_prime_UTR 45.0%
ATTACGATAAGCCAGCGCTT+AGG - chr7_3:58182084-58182103 None:intergenic 45.0%
AATCACACAGCACATGCATC+AGG - chr7_3:58182234-58182253 None:intergenic 45.0%
AACTGGAACAGTGCAACAGT+TGG + chr7_3:58182506-58182525 Msa1112210:five_prime_UTR 45.0%
GGTATATGGGCAGACAAACT+TGG + chr7_3:58182694-58182713 Msa1112210:five_prime_UTR 45.0%
ATATGGGCAGACAAACTTGG+TGG + chr7_3:58182697-58182716 Msa1112210:five_prime_UTR 45.0%
TATGGGCAGACAAACTTGGT+GGG + chr7_3:58182698-58182717 Msa1112210:five_prime_UTR 45.0%
TGGAGTTGTATGGTGGTCAA+TGG + chr7_3:58182738-58182757 Msa1112210:five_prime_UTR 45.0%
AGCCCAATTCTTGCAGCAAT+AGG - chr7_3:58182778-58182797 None:intergenic 45.0%
ATGCGTGCCTTTATGGGAAT+CGG + chr7_3:58182814-58182833 Msa1112210:five_prime_UTR 45.0%
!! AACCTCACCGATTCCCATAA+AGG - chr7_3:58182824-58182843 None:intergenic 45.0%
TTTATGGGAATCGGTGAGGT+TGG + chr7_3:58182823-58182842 Msa1112210:intron 45.0%
! GTCCAAGTGGATTCCAGTTT+CGG + chr7_3:58183282-58183301 Msa1112210:five_prime_UTR 45.0%
GTATATAGCGGCATGTACCT+TGG + chr7_3:58183328-58183347 Msa1112210:five_prime_UTR 45.0%
!! ATGTACCTTGGTTCTGTGGT+AGG + chr7_3:58183340-58183359 Msa1112210:five_prime_UTR 45.0%
!! GAAGCATCTGGTTTGCCTTT+TGG + chr7_3:58183434-58183453 Msa1112210:five_prime_UTR 45.0%
! CTTTTGGTGAGCTATATGCC+TGG - chr7_3:58183606-58183625 None:intergenic 45.0%
TAGCTCACCAAAAGATGACC+CGG + chr7_3:58183612-58183631 Msa1112210:five_prime_UTR 45.0%
ACATCTGTTCGGACATTCCT+TGG + chr7_3:58183685-58183704 Msa1112210:five_prime_UTR 45.0%
ATAAGAGCCCAGATTCAGTG+AGG - chr7_3:58183920-58183939 None:intergenic 45.0%
GGCTCTTATGTGTTCTTCCA+TGG + chr7_3:58183931-58183950 Msa1112210:CDS 45.0%
GCCGTGTTTGCAAATATTGG+AGG + chr7_3:58183963-58183982 Msa1112210:CDS 45.0%
GGCAGATCATGCAATCAATC+GGG + chr7_3:58184191-58184210 Msa1112210:intron 45.0%
TCAATTTCAGGGCGTATTGC+TGG + chr7_3:58184640-58184659 Msa1112210:intron 45.0%
CAATTTCAGGGCGTATTGCT+GGG + chr7_3:58184641-58184660 Msa1112210:intron 45.0%
!!! AATTTTCAAATAAAAAAATT+TGG + chr7_3:58181226-58181245 Msa1112210:intron 5.0%
!!! ATAATTTTTTTTTTTTTACA+GGG + chr7_3:58184413-58184432 Msa1112210:intron 5.0%
GATCCTGTGGCATCTGATGA+AGG + chr7_3:58181994-58182013 Msa1112210:five_prime_UTR 50.0%
GTTCCTTCATCAGATGCCAC+AGG - chr7_3:58182000-58182019 None:intergenic 50.0%
GTGGCATCTGATGAAGGAAC+AGG + chr7_3:58182000-58182019 Msa1112210:five_prime_UTR 50.0%
ATGGTTCGCTGGTATCTCCT+TGG + chr7_3:58182046-58182065 Msa1112210:five_prime_UTR 50.0%
TTAGGAAGTTGCTGCCACCA+AGG - chr7_3:58182066-58182085 None:intergenic 50.0%
CTGGGGCTATCTACTTACTC+AGG + chr7_3:58182550-58182569 Msa1112210:five_prime_UTR 50.0%
TGCCTTTATGGGAATCGGTG+AGG + chr7_3:58182819-58182838 Msa1112210:five_prime_UTR 50.0%
CTCCGAAACTGGAATCCACT+TGG - chr7_3:58183287-58183306 None:intergenic 50.0%
GATCTGCTTCTCTCCGAAAC+TGG - chr7_3:58183298-58183317 None:intergenic 50.0%
AAAACACTGATGGCCACCCA+AGG - chr7_3:58183396-58183415 None:intergenic 50.0%
!! TTGGATCCCTTGGAAGCATC+TGG + chr7_3:58183422-58183441 Msa1112210:five_prime_UTR 50.0%
GGCAAACCAGATGCTTCCAA+GGG - chr7_3:58183431-58183450 None:intergenic 50.0%
AGGCAAACCAGATGCTTCCA+AGG - chr7_3:58183432-58183451 None:intergenic 50.0%
GGTGAGCTATATGCCTGGAA+AGG - chr7_3:58183601-58183620 None:intergenic 50.0%
CCAAAAGATGACCCGGATCT+CGG + chr7_3:58183619-58183638 Msa1112210:five_prime_UTR 50.0%
CAAAAGATGACCCGGATCTC+GGG + chr7_3:58183620-58183639 Msa1112210:five_prime_UTR 50.0%
AAAAGATGACCCGGATCTCG+GGG + chr7_3:58183621-58183640 Msa1112210:five_prime_UTR 50.0%
! TTTTCCTCTACCCCGAGATC+CGG - chr7_3:58183634-58183653 None:intergenic 50.0%
! TTTTCGATACGCCGCCTTCA+AGG - chr7_3:58183666-58183685 None:intergenic 50.0%
AACACGGCCATGGTTAACCA+TGG - chr7_3:58183951-58183970 None:intergenic 50.0%
GCCGACACGTTAGTTAGCAA+AGG + chr7_3:58183993-58184012 Msa1112210:CDS 50.0%
ATGCACAATACTGCCATGGC+GGG - chr7_3:58184265-58184284 None:intergenic 50.0%
CATGCACAATACTGCCATGG+CGG - chr7_3:58184266-58184285 None:intergenic 50.0%
TGCCATGCACAATACTGCCA+TGG - chr7_3:58184269-58184288 None:intergenic 50.0%
ATTGTGCATGGCATGCAGTC+AGG + chr7_3:58184276-58184295 Msa1112210:CDS 50.0%
CTGGGACTATCGAATACAGC+AGG + chr7_3:58184659-58184678 Msa1112210:CDS 50.0%
AATACAGCAGGTGTGCTTGC+TGG + chr7_3:58184671-58184690 Msa1112210:CDS 50.0%
GTTCGCTGGTATCTCCTTGG+TGG + chr7_3:58182049-58182068 Msa1112210:five_prime_UTR 55.0%
! GGCAGACAAACTTGGTGGGA+AGG + chr7_3:58182702-58182721 Msa1112210:five_prime_UTR 55.0%
GGGAAGGTCGTGCTAGGATT+TGG + chr7_3:58182718-58182737 Msa1112210:five_prime_UTR 55.0%
!! CGGCATGTACCTTGGTTCTG+TGG + chr7_3:58183336-58183355 Msa1112210:five_prime_UTR 55.0%
CCAAGCCTACCACAGAACCA+AGG - chr7_3:58183348-58183367 None:intergenic 55.0%
!! CCTTGGTTCTGTGGTAGGCT+TGG + chr7_3:58183345-58183364 Msa1112210:five_prime_UTR 55.0%
! CTGATGGCCACCCAAGGTTT+TGG - chr7_3:58183390-58183409 None:intergenic 55.0%
! CCGAGATCCGGGTCATCTTT+TGG - chr7_3:58183622-58183641 None:intergenic 55.0%
TTTCCTCTACCCCGAGATCC+GGG - chr7_3:58183633-58183652 None:intergenic 55.0%
!!! CCATGGCGGGTGTTTTGACA+TGG - chr7_3:58184252-58184271 None:intergenic 55.0%
CCATGTCAAAACACCCGCCA+TGG + chr7_3:58184249-58184268 Msa1112210:CDS 55.0%
CGCCATGGCAGTATTGTGCA+TGG + chr7_3:58184264-58184283 Msa1112210:CDS 55.0%
TCGGATGCCTTCTCACAGTC+TGG + chr7_3:58184437-58184456 Msa1112210:CDS 55.0%
GTCTTTGGCACAGCTGCAAC+TGG + chr7_3:58184695-58184714 Msa1112210:CDS 55.0%
GGCAGCAACTTCCTAAGCGC+TGG + chr7_3:58182070-58182089 Msa1112210:five_prime_UTR 60.0%
CTTGGTGGGAAGGTCGTGCT+AGG + chr7_3:58182712-58182731 Msa1112210:five_prime_UTR 60.0%
! GGTGTGCTTGCTGGCGTCTT+TGG + chr7_3:58184680-58184699 Msa1112210:CDS 60.0%
TGACCCGGATCTCGGGGTAG+AGG + chr7_3:58183627-58183646 Msa1112210:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 58180972 58185309 58180972 ID=Msa1112210;Name=Msa1112210
chr7_3 mRNA 58180972 58185309 58180972 ID=Msa1112210-mRNA-1;Parent=Msa1112210;Name=Msa1112210-mRNA-1;_AED=0.31;_eAED=0.31;_QI=1211|1|1|1|0.8|0.81|11|386|169
chr7_3 exon 58180972 58181149 58180972 ID=Msa1112210-mRNA-1:exon:12710;Parent=Msa1112210-mRNA-1
chr7_3 exon 58181779 58182143 58181779 ID=Msa1112210-mRNA-1:exon:12711;Parent=Msa1112210-mRNA-1
chr7_3 exon 58182464 58182571 58182464 ID=Msa1112210-mRNA-1:exon:12712;Parent=Msa1112210-mRNA-1
chr7_3 exon 58182685 58182840 58182685 ID=Msa1112210-mRNA-1:exon:12713;Parent=Msa1112210-mRNA-1
chr7_3 exon 58183250 58183465 58183250 ID=Msa1112210-mRNA-1:exon:12714;Parent=Msa1112210-mRNA-1
chr7_3 exon 58183607 58183815 58183607 ID=Msa1112210-mRNA-1:exon:12715;Parent=Msa1112210-mRNA-1
chr7_3 exon 58183903 58184040 58183903 ID=Msa1112210-mRNA-1:exon:12716;Parent=Msa1112210-mRNA-1
chr7_3 exon 58184196 58184297 58184196 ID=Msa1112210-mRNA-1:exon:12717;Parent=Msa1112210-mRNA-1
chr7_3 exon 58184434 58184499 58184434 ID=Msa1112210-mRNA-1:exon:12718;Parent=Msa1112210-mRNA-1
chr7_3 exon 58184650 58184734 58184650 ID=Msa1112210-mRNA-1:exon:12719;Parent=Msa1112210-mRNA-1
chr7_3 exon 58184826 58185309 58184826 ID=Msa1112210-mRNA-1:exon:12720;Parent=Msa1112210-mRNA-1
chr7_3 five_prime_UTR 58180972 58181149 58180972 ID=Msa1112210-mRNA-1:five_prime_utr;Parent=Msa1112210-mRNA-1
chr7_3 five_prime_UTR 58181779 58182143 58181779 ID=Msa1112210-mRNA-1:five_prime_utr;Parent=Msa1112210-mRNA-1
chr7_3 five_prime_UTR 58182464 58182571 58182464 ID=Msa1112210-mRNA-1:five_prime_utr;Parent=Msa1112210-mRNA-1
chr7_3 five_prime_UTR 58182685 58182840 58182685 ID=Msa1112210-mRNA-1:five_prime_utr;Parent=Msa1112210-mRNA-1
chr7_3 five_prime_UTR 58183250 58183465 58183250 ID=Msa1112210-mRNA-1:five_prime_utr;Parent=Msa1112210-mRNA-1
chr7_3 five_prime_UTR 58183607 58183794 58183607 ID=Msa1112210-mRNA-1:five_prime_utr;Parent=Msa1112210-mRNA-1
chr7_3 CDS 58183795 58183815 58183795 ID=Msa1112210-mRNA-1:cds;Parent=Msa1112210-mRNA-1
chr7_3 CDS 58183903 58184040 58183903 ID=Msa1112210-mRNA-1:cds;Parent=Msa1112210-mRNA-1
chr7_3 CDS 58184196 58184297 58184196 ID=Msa1112210-mRNA-1:cds;Parent=Msa1112210-mRNA-1
chr7_3 CDS 58184434 58184499 58184434 ID=Msa1112210-mRNA-1:cds;Parent=Msa1112210-mRNA-1
chr7_3 CDS 58184650 58184734 58184650 ID=Msa1112210-mRNA-1:cds;Parent=Msa1112210-mRNA-1
chr7_3 CDS 58184826 58184923 58184826 ID=Msa1112210-mRNA-1:cds;Parent=Msa1112210-mRNA-1
chr7_3 three_prime_UTR 58184924 58185309 58184924 ID=Msa1112210-mRNA-1:three_prime_utr;Parent=Msa1112210-mRNA-1
Gene Sequence

>Msa1112210

ATGCCTACTTACTATAATCAGGTTCTGAAGTTCAACCTCACTGAATCTGGGCTCTTATGTGTTCTTCCATGGTTAACCATGGCCGTGTTTGCAAATATTGGAGGGTGGATAGCCGACACGTTAGTTAGCAAAGGTGTTTCCATAACAACTGTTCGAAAGATCATGCAATCAATCGGGTTTCTAGGTCCTGCCTTTTTTCTTACGCAACTGAGCCATGTCAAAACACCCGCCATGGCAGTATTGTGCATGGCATGCAGTCAGGGATCGGATGCCTTCTCACAGTCTGGTCTTTATTCCAATCATCAAGACATTGGACCACGTTATGCTGGCGTATTGCTGGGACTATCGAATACAGCAGGTGTGCTTGCTGGCGTCTTTGGCACAGCTGCAACTGGATACATACTTCAAAGAGGTTCTTGGAATGACGTGTTTAAGGTTTCTGTTGCATTATACATAATAGGCACACTGGTATGGAATATATTTTCTACTGGGGAGAAGATTCTTGACTGA

Protein sequence

>Msa1112210

MPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSKGVSITTVRKIMQSIGFLGPAFFLTQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWNDVFKVSVALYIIGTLVWNIFSTGEKILD*