AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0387030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387030 MtrunA17_Chr3g0145151 97.398 269 4 2 1 266 1 269 0.0 516
Msa0387030 MtrunA17_Chr3g0145141 81.855 248 39 2 20 266 25 267 3.85e-143 402
Msa0387030 MtrunA17_Chr3g0080991 31.064 235 91 7 70 252 1459 1674 1.69e-18 85.1
Msa0387030 MtrunA17_Chr3g0080991 32.105 190 77 6 51 188 1488 1677 1.26e-16 79.7
Msa0387030 MtrunA17_Chr3g0080991 28.509 228 73 6 51 188 1986 2213 5.88e-14 71.6
Msa0387030 MtrunA17_Chr3g0080991 29.787 235 88 6 89 254 1986 2212 2.84e-12 66.6
Msa0387030 MtrunA17_Chr5g0422121 41.270 63 33 1 89 151 277 335 9.02e-12 65.1
Msa0387030 MtrunA17_Chr5g0422121 37.975 79 37 3 36 102 253 331 2.13e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387030 AT1G75560.2 58.871 248 81 6 23 266 27 257 2.59e-90 268
Msa0387030 AT1G75560.1 58.871 248 81 6 23 266 27 257 2.59e-90 268
Msa0387030 AT4G36020.1 31.308 214 76 7 70 232 102 295 4.36e-18 82.4
Msa0387030 AT4G36020.1 33.333 189 81 9 89 253 102 269 9.06e-14 70.1
Msa0387030 AT4G36020.3 31.308 214 76 7 70 232 102 295 4.36e-18 82.4
Msa0387030 AT4G36020.3 33.333 189 81 9 89 253 102 269 9.06e-14 70.1
Msa0387030 AT4G36020.2 32.099 162 64 6 70 186 102 262 1.68e-15 74.7
Msa0387030 AT4G36020.2 32.374 139 64 4 51 168 134 263 8.37e-14 70.1

Find 131 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATGTGTGCAATGTTTC+TGG 0.171261 3_1:+90866877 Msa0387030:CDS
GAGATTCAAGTCGGGGTTTC+AGG 0.187299 3_1:+90865250 Msa0387030:CDS
ACATTGCACACATTGCAAAT+TGG 0.240976 3_1:-90866871 None:intergenic
TCTCCAATAACGTCGGATTT+TGG 0.258901 3_1:-90866919 None:intergenic
ATAATGTTGGTAAGCTTATA+TGG 0.271435 3_1:+90867459 Msa0387030:three_prime_UTR
TGTCCAAAATCCGACGTTAT+TGG 0.272950 3_1:+90866916 Msa0387030:CDS
TGCCACAATTGTGGTCTTCC+AGG 0.279746 3_1:+90865630 Msa0387030:CDS
GGCCCTGCTTATAGCAATTA+TGG 0.285159 3_1:-90866765 None:intergenic
TGCAATAATTGTAGGAAAAC+AGG 0.288832 3_1:+90866820 Msa0387030:CDS
ACATTGCAAATTGGGTCATT+TGG 0.303614 3_1:-90866862 None:intergenic
TTGTGGCAAACCGCAACATT+AGG 0.314490 3_1:-90865615 None:intergenic
CATTGCACACATTGCAAATT+GGG 0.319988 3_1:-90866870 None:intergenic
AGTTGTGGGTTACAGTTATA+TGG 0.333154 3_1:+90867174 Msa0387030:three_prime_UTR
GCCCTCATTTGGACAATTGC+TGG 0.348692 3_1:-90866659 None:intergenic
GAGCGAATCTTACGGATTCC+AGG 0.354456 3_1:-90865192 None:intergenic
ACCCTAGTAGGAGGTACTAA+TGG 0.356165 3_1:+90867145 Msa0387030:CDS
CCTATCGCGATGCTCCTTAC+AGG 0.358181 3_1:+90865226 Msa0387030:CDS
GCCGCAGCCGGAGCCGAAGC+AGG 0.358355 3_1:+90865148 Msa0387030:CDS
TTGGCATATGAGTGCCCTTC+AGG 0.359293 3_1:+90867105 Msa0387030:CDS
TGCCACACCTGTGGTAAAAC+TGG 0.367658 3_1:+90866685 Msa0387030:CDS
TGCAGGAACTGCCAGCAATT+TGG 0.368408 3_1:+90867018 Msa0387030:CDS
AAGCTGTGGAAGGCGAAATA+AGG 0.369661 3_1:+90863553 Msa0387030:five_prime_UTR
GCCGGAGCCGAAGCAGGAGC+AGG 0.383188 3_1:+90865154 Msa0387030:CDS
GGTGGTGGTGGTGTTGCTGC+TGG 0.383192 3_1:+90866973 Msa0387030:CDS
TCCTGCTTCGGCTCCGGCTG+CGG 0.383664 3_1:-90865149 None:intergenic
CTCCTTGTCGTGACTTCACC+AGG 0.398749 3_1:-90867274 None:intergenic
TCAGCTCCATCACTGCCTCC+AGG 0.400340 3_1:+90866727 Msa0387030:CDS
GACTCATGTGACCAAATTGC+TGG 0.414152 3_1:-90867029 None:intergenic
TGTGGCAAACCGCAACATTA+GGG 0.414298 3_1:-90865614 None:intergenic
TTCTGCTCCTGCTCCTGCTT+CGG 0.420789 3_1:-90865161 None:intergenic
AGCAATTATGGCACAACCTT+AGG 0.428281 3_1:-90866753 None:intergenic
AGCTTCCGTGGTGCTGGTGG+TGG 0.429541 3_1:+90866958 Msa0387030:CDS
ACCCATTAGTACCTCCTACT+AGG 0.431893 3_1:-90867147 None:intergenic
CCCTAGTAGGAGGTACTAAT+GGG 0.433528 3_1:+90867146 Msa0387030:exon
GTGTGGCAAATGCCCTCATT+TGG 0.436297 3_1:-90866670 None:intergenic
AGAAGGCTTGCAATAATTGT+AGG 0.438057 3_1:+90866812 Msa0387030:CDS
GGTGGTGTTGCTGCTGGTGG+TGG 0.439125 3_1:+90866979 Msa0387030:CDS
CAGCTCCATCACTGCCTCCA+GGG 0.439506 3_1:+90866728 Msa0387030:CDS
GCTTTATTGCTCTTTGAACC+TGG 0.442210 3_1:+90867256 Msa0387030:three_prime_UTR
CACTGCCTCCAGGGGACCTA+AGG 0.442515 3_1:+90866737 Msa0387030:CDS
GTAAAACTGGCCACCGTGCT+AGG 0.444767 3_1:+90866698 Msa0387030:CDS
TCCTGCTCCTGCTTCGGCTC+CGG 0.445406 3_1:-90865155 None:intergenic
AGAGGCAGCTTCCGTGGTGC+TGG 0.452093 3_1:+90866952 Msa0387030:CDS
TACTAATGGGTGACAAGTTG+TGG 0.453854 3_1:+90867159 Msa0387030:exon
AGGTCCCCTGGAGGCAGTGA+TGG 0.459660 3_1:-90866733 None:intergenic
TTCCGTGGTGCTGGTGGTGG+TGG 0.461393 3_1:+90866961 Msa0387030:CDS
TGTGTATGTTGTGGTGGAGG+TGG 0.465293 3_1:+90865072 Msa0387030:five_prime_UTR
TCACATGAGTCGGGACTGCA+TGG 0.471053 3_1:+90867041 Msa0387030:CDS
GTGCCATAATTGCTATAAGC+AGG 0.473079 3_1:+90866762 Msa0387030:CDS
TGCTGGAATTGCAAAGAATC+TGG 0.480642 3_1:+90866628 Msa0387030:CDS
TTCGCCTTCCACAGCTTCGT+CGG 0.486258 3_1:-90863547 None:intergenic
AGCTCCATCACTGCCTCCAG+GGG 0.487991 3_1:+90866729 Msa0387030:CDS
GCCACAATTGTGGTCTTCCA+GGG 0.490979 3_1:+90865631 Msa0387030:CDS
AGCAATTTGGTCACATGAGT+CGG 0.491345 3_1:+90867031 Msa0387030:CDS
GGTGGTGGTGTTGCTGCTGG+TGG 0.497840 3_1:+90866976 Msa0387030:CDS
ATTGGAGACCACAGAGGCAG+AGG 0.500245 3_1:+90866934 Msa0387030:CDS
GCAATTTGGTCACATGAGTC+GGG 0.501366 3_1:+90867032 Msa0387030:CDS
TGGCACAACCTTAGGTCCCC+TGG 0.501822 3_1:-90866745 None:intergenic
TTGTGGATCGCTACCCTAGT+AGG 0.503649 3_1:+90867133 Msa0387030:CDS
CGACTTGAATCTCTCCTGTA+AGG 0.503873 3_1:-90865240 None:intergenic
GTCGATCAGAGCGAATCTTA+CGG 0.504290 3_1:-90865200 None:intergenic
ATTTGTGCAAGAACTGTAAG+AGG 0.505203 3_1:+90865568 Msa0387030:CDS
AGGAGCAGAAGTCGTAGCCC+TGG 0.505589 3_1:+90865174 Msa0387030:CDS
ATTCCAGCACACGGATTTCG+TGG 0.510855 3_1:-90866614 None:intergenic
GCTCCACGAAATCCGTGTGC+TGG 0.517660 3_1:+90866611 Msa0387030:CDS
TGTCATAATTGTGGAGGTCG+TGG 0.518556 3_1:+90867078 Msa0387030:CDS
GGCCAGCAATTGTCCAAATG+AGG 0.519279 3_1:+90866657 Msa0387030:CDS
TGCAAGAACTGTAAGAGGCC+TGG 0.521551 3_1:+90865573 Msa0387030:CDS
TGAGTTCAGACAGCCGCAGC+CGG 0.525876 3_1:+90865136 Msa0387030:CDS
TTGATGATTTGTCATAATTG+TGG 0.526195 3_1:+90867069 Msa0387030:CDS
TTACAGGAGAGATTCAAGTC+GGG 0.528704 3_1:+90865242 Msa0387030:CDS
CCCATTAGTACCTCCTACTA+GGG 0.531664 3_1:-90867146 None:intergenic
AGTTCTTGCACAAATTGTCT+CGG 0.531667 3_1:-90865560 None:intergenic
CACATGAGTCGGGACTGCAT+GGG 0.532181 3_1:+90867042 Msa0387030:CDS
GGATGGATTTGACATAATGT+TGG 0.534554 3_1:+90867446 Msa0387030:three_prime_UTR
TTGTGGAGGTCGTGGTCACT+TGG 0.535248 3_1:+90867086 Msa0387030:CDS
GGATGATGATGCCAATGTAT+TGG 0.536748 3_1:+90867301 Msa0387030:three_prime_UTR
CACCACCACCACCAGCACCA+CGG 0.540558 3_1:-90866963 None:intergenic
ACAATTATGACAAATCATCA+AGG 0.542498 3_1:-90867067 None:intergenic
ATGTGGACAGGAGGAGGCAG+TGG 0.543541 3_1:+90865044 Msa0387030:intron
GATTGTGTATGTTGTGGTGG+AGG 0.546696 3_1:+90865069 Msa0387030:five_prime_UTR
AGAGGCAGAGGCAGCTTCCG+TGG 0.547129 3_1:+90866946 Msa0387030:CDS
GTGCAATGTTTCTGGACACT+TGG 0.553409 3_1:+90866885 Msa0387030:CDS
TTCTTTGCAATTCCAGCACA+CGG 0.554860 3_1:-90866623 None:intergenic
AAAGCTTATGGCCAATACAT+TGG 0.555890 3_1:-90867312 None:intergenic
ACATGAGTCGGGACTGCATG+GGG 0.562868 3_1:+90867043 Msa0387030:CDS
TTGTAGGAAAACAGGGCACT+TGG 0.571612 3_1:+90866828 Msa0387030:CDS
AGCGAATCTTACGGATTCCA+GGG 0.573852 3_1:-90865191 None:intergenic
TGTGGGTTACAGTTATATGG+TGG 0.574918 3_1:+90867177 Msa0387030:three_prime_UTR
GGCAGCTTCCGTGGTGCTGG+TGG 0.577253 3_1:+90866955 Msa0387030:CDS
TTTCAACTCCGACGAAGCTG+TGG 0.579508 3_1:+90863539 Msa0387030:five_prime_UTR
ACTAATGGGTGACAAGTTGT+GGG 0.580812 3_1:+90867160 Msa0387030:exon
TAAAACTGGCCACCGTGCTA+GGG 0.581461 3_1:+90866699 Msa0387030:CDS
CGATCCACAAAACGACCTGA+AGG 0.581470 3_1:-90867120 None:intergenic
GTTACCGTGATGTCGTGTGC+AGG 0.585031 3_1:+90867001 Msa0387030:CDS
AGTTGAAATGAACGGAAACA+AGG 0.585465 3_1:-90863524 None:intergenic
TTGCAAAGAATCTGGCCACA+TGG 0.589813 3_1:+90866636 Msa0387030:CDS
GTTGCGGTTTGCCACAATTG+TGG 0.589836 3_1:+90865621 Msa0387030:CDS
GCTGATTGTGTATGTTGTGG+TGG 0.590661 3_1:+90865066 Msa0387030:five_prime_UTR
GCCAGCAATTGTCCAAATGA+GGG 0.600151 3_1:+90866658 Msa0387030:CDS
CATTCTCTAGCATAATGACC+AGG 0.602340 3_1:-90865591 None:intergenic
GGAAGCTGCCTCTGCCTCTG+TGG 0.603886 3_1:-90866942 None:intergenic
CCTGTAAGGAGCATCGCGAT+AGG 0.607376 3_1:-90865226 None:intergenic
ATTATTGCAAGCCTTCTCGT+TGG 0.611683 3_1:-90866806 None:intergenic
TGGAGGTGGTTGCTGATCAG+TGG 0.614540 3_1:+90865086 Msa0387030:five_prime_UTR
TACAGGAGAGATTCAAGTCG+GGG 0.614848 3_1:+90865243 Msa0387030:CDS
TGCCATAATTGCTATAAGCA+GGG 0.615274 3_1:+90866763 Msa0387030:CDS
ACCCTGGAAGACCACAATTG+TGG 0.615547 3_1:-90865632 None:intergenic
CTTACAGGAGAGATTCAAGT+CGG 0.616392 3_1:+90865241 Msa0387030:CDS
AACTCCGACGAAGCTGTGGA+AGG 0.617586 3_1:+90863543 Msa0387030:five_prime_UTR
TAGAGAATGCCCTAATGTTG+CGG 0.618296 3_1:+90865605 Msa0387030:CDS
GTGGCTGATTGTGTATGTTG+TGG 0.621304 3_1:+90865063 Msa0387030:five_prime_UTR
ATGATTTGTCATAATTGTGG+AGG 0.621458 3_1:+90867072 Msa0387030:CDS
TGTTGAATGTACCAACGAGA+AGG 0.628565 3_1:+90866795 Msa0387030:CDS
GAAGTCACGACAAGGAGTCA+AGG 0.629578 3_1:+90867280 Msa0387030:three_prime_UTR
GAGCTGAGCACTCCCTAGCA+CGG 0.630825 3_1:-90866711 None:intergenic
CAATTATGACAAATCATCAA+GGG 0.632748 3_1:-90867066 None:intergenic
TAATCTAACGTGTTATCTAG+AGG 0.637342 3_1:-90863491 None:intergenic
AGTTCCTGCACACGACATCA+CGG 0.644450 3_1:-90867005 None:intergenic
TTCGTCGGAGTTGAAATGAA+CGG 0.646241 3_1:-90863532 None:intergenic
GCAATAATTGTAGGAAAACA+GGG 0.655669 3_1:+90866821 Msa0387030:CDS
TGGATCGCTACCCTAGTAGG+AGG 0.659785 3_1:+90867136 Msa0387030:CDS
GATCCACAAAACGACCTGAA+GGG 0.666668 3_1:-90867119 None:intergenic
GAGGGCATTTGCCACACCTG+TGG 0.667696 3_1:+90866676 Msa0387030:CDS
TTGGACAATTGCTGGCCATG+TGG 0.668284 3_1:-90866651 None:intergenic
AACCTGGTGAAGTCACGACA+AGG 0.675147 3_1:+90867272 Msa0387030:three_prime_UTR
TCTGTGGTCTCCAATAACGT+CGG 0.680319 3_1:-90866926 None:intergenic
CACAACCTTAGGTCCCCTGG+AGG 0.719764 3_1:-90866742 None:intergenic
TGGTACATTCAACAGCAATG+TGG 0.725759 3_1:-90866786 None:intergenic
CTGAGCACTCCCTAGCACGG+TGG 0.735482 3_1:-90866708 None:intergenic
GACGTTATTGGAGACCACAG+AGG 0.762303 3_1:+90866928 Msa0387030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACCAATTTCTTTAATTAAT+CGG + chr3_1:90863587-90863606 Msa0387030:intron 15.0%
!!! AACTGAGTTTAATTTATATA+GGG + chr3_1:90864462-90864481 Msa0387030:intron 15.0%
!!! TTTTGGTTTTTATATTTTGA+AGG + chr3_1:90864972-90864991 Msa0387030:intron 15.0%
!!! TTTGGTTTTTATATTTTGAA+GGG + chr3_1:90864973-90864992 Msa0387030:intron 15.0%
!! GACAAAAAAAAAACAAATTA+TGG - chr3_1:90865538-90865557 None:intergenic 15.0%
!! TGCTTAAGTAAATTATTTAT+CGG + chr3_1:90865710-90865729 Msa0387030:intron 15.0%
!! AAAAAAAAAAAATGAGCAAA+AGG - chr3_1:90866093-90866112 None:intergenic 15.0%
!! AACCGATTAATTAAAGAAAT+TGG - chr3_1:90863592-90863611 None:intergenic 20.0%
!! ATCAATGTTAATTACAGTTA+GGG + chr3_1:90863646-90863665 Msa0387030:intron 20.0%
!!! TTTAATTTTTTTTCCCTCTT+TGG - chr3_1:90863920-90863939 None:intergenic 20.0%
!!! AAACATTCTTTTTCTAGTTT+CGG - chr3_1:90864250-90864269 None:intergenic 20.0%
!!! CAACTGAGTTTAATTTATAT+AGG + chr3_1:90864461-90864480 Msa0387030:intron 20.0%
!! ATTTGTTTCCTTGATTAATT+AGG - chr3_1:90864558-90864577 None:intergenic 20.0%
!! AAGAAAAACTGAGAAATATA+TGG - chr3_1:90864631-90864650 None:intergenic 20.0%
!!! TTGGTTTTTATATTTTGAAG+GGG + chr3_1:90864974-90864993 Msa0387030:intron 20.0%
!! CATAAAAAGAGTAAATGAAT+GGG - chr3_1:90865420-90865439 None:intergenic 20.0%
!! TCATAAAAAGAGTAAATGAA+TGG - chr3_1:90865421-90865440 None:intergenic 20.0%
!! GCTTAAGTAAATTATTTATC+GGG + chr3_1:90865711-90865730 Msa0387030:intron 20.0%
!! CTTAAGTAAATTATTTATCG+GGG + chr3_1:90865712-90865731 Msa0387030:intron 20.0%
!! ATATCAACTTTAATTATGCA+AGG - chr3_1:90865781-90865800 None:intergenic 20.0%
!!! TGCATAATTAAAGTTGATAT+TGG + chr3_1:90865781-90865800 Msa0387030:intron 20.0%
!! AAATCTATGAAAGAAAATGT+AGG - chr3_1:90865851-90865870 None:intergenic 20.0%
!! AAATCTAAGAAAATCTATCT+AGG - chr3_1:90865875-90865894 None:intergenic 20.0%
!!! AGATAGATTTTCTTAGATTT+TGG + chr3_1:90865875-90865894 Msa0387030:intron 20.0%
!! AAAACCATATTATTTGAGAA+CGG - chr3_1:90866117-90866136 None:intergenic 20.0%
!! TGAAAATAAAACCATAATCT+AGG - chr3_1:90866149-90866168 None:intergenic 20.0%
!!! TTGTTTTTTTCCAATCTTTT+CGG - chr3_1:90866252-90866271 None:intergenic 20.0%
!! TTATTTATTGAAGTGAAACA+AGG - chr3_1:90866288-90866307 None:intergenic 20.0%
!! AAATCAAATGAAGATTGTAA+AGG - chr3_1:90866316-90866335 None:intergenic 20.0%
!!! ACAATCTTCATTTGATTTTA+TGG + chr3_1:90866318-90866337 Msa0387030:intron 20.0%
!!! TTTTCCTTTTATGTTTAATC+AGG + chr3_1:90866572-90866591 Msa0387030:intron 20.0%
!! TAGAAATTAAAAAGCTTAGA+AGG - chr3_1:90867397-90867416 None:intergenic 20.0%
!!! CTTTTTAATTTCTAGATACA+GGG + chr3_1:90867403-90867422 Msa0387030:three_prime_UTR 20.0%
! GATCAATGTTAATTACAGTT+AGG + chr3_1:90863645-90863664 Msa0387030:intron 25.0%
! AGTTAGGGTTATGTTTATTT+AGG + chr3_1:90863661-90863680 Msa0387030:intron 25.0%
!! CCTTCATATTTCTAATTCTA+GGG + chr3_1:90863704-90863723 Msa0387030:intron 25.0%
!! ATTGATGTCAGATTTTGAAT+CGG - chr3_1:90863784-90863803 None:intergenic 25.0%
! CATCAATTCTAGGTATATTA+AGG + chr3_1:90863797-90863816 Msa0387030:intron 25.0%
!!! GATTTTTAGCTATGTAGTTA+TGG + chr3_1:90863833-90863852 Msa0387030:intron 25.0%
! TGCAATTAATTTATCGCTAA+TGG - chr3_1:90863888-90863907 None:intergenic 25.0%
! AGCTCAAATATCATACTATT+CGG - chr3_1:90863948-90863967 None:intergenic 25.0%
! ACTAGAAAAAGAATGTTTGA+AGG + chr3_1:90864252-90864271 Msa0387030:intron 25.0%
! CTAGAAAAAGAATGTTTGAA+GGG + chr3_1:90864253-90864272 Msa0387030:intron 25.0%
! GCATATCATAACATGTAAAT+AGG - chr3_1:90864518-90864537 None:intergenic 25.0%
! TTAGGATCTTTGTAATCATT+AGG - chr3_1:90864540-90864559 None:intergenic 25.0%
! ACAAAGATCCTAATTAATCA+AGG + chr3_1:90864547-90864566 Msa0387030:intron 25.0%
! TGTCTTCAAATCAATTTCTA+CGG + chr3_1:90864682-90864701 Msa0387030:intron 25.0%
! AATTTCATGTTCTATACTGT+TGG + chr3_1:90864947-90864966 Msa0387030:intron 25.0%
! CACATATTCAAAATGTCAAA+TGG - chr3_1:90865495-90865514 None:intergenic 25.0%
! AATTCTTCAGAAGAAATGTA+AGG - chr3_1:90865921-90865940 None:intergenic 25.0%
! ACAAGATAACACAAATGAAT+TGG - chr3_1:90865998-90866017 None:intergenic 25.0%
!! TTTTCCGTTCTCAAATAATA+TGG + chr3_1:90866110-90866129 Msa0387030:intron 25.0%
! CTTTATAAACATGTCATTGA+AGG + chr3_1:90866193-90866212 Msa0387030:intron 25.0%
! CAATTATGACAAATCATCAA+GGG - chr3_1:90867069-90867088 None:intergenic 25.0%
! ACAATTATGACAAATCATCA+AGG - chr3_1:90867070-90867089 None:intergenic 25.0%
!! TTGATGATTTGTCATAATTG+TGG + chr3_1:90867069-90867088 Msa0387030:CDS 25.0%
!!! AGTTATATGGTGGTTTTTTA+TGG + chr3_1:90867187-90867206 Msa0387030:three_prime_UTR 25.0%
!! TTTTTATGGTTATCTTGTTG+AGG + chr3_1:90867201-90867220 Msa0387030:three_prime_UTR 25.0%
! TAAAGCGATAAAAAAGCTTA+TGG - chr3_1:90867327-90867346 None:intergenic 25.0%
!!! GCTTTTTAATTTCTAGATAC+AGG + chr3_1:90867402-90867421 Msa0387030:three_prime_UTR 25.0%
!! ATAATGTTGGTAAGCTTATA+TGG + chr3_1:90867459-90867478 Msa0387030:three_prime_UTR 25.0%
TAATCTAACGTGTTATCTAG+AGG - chr3_1:90863494-90863513 None:intergenic 30.0%
! GCCTTCATATTTCTAATTCT+AGG + chr3_1:90863703-90863722 Msa0387030:intron 30.0%
CCCTAGAATTAGAAATATGA+AGG - chr3_1:90863707-90863726 None:intergenic 30.0%
! TTGATGTCAGATTTTGAATC+GGG - chr3_1:90863783-90863802 None:intergenic 30.0%
CAAAATCTGACATCAATTCT+AGG + chr3_1:90863787-90863806 Msa0387030:intron 30.0%
ATATTAAGGTTGCTAAGTGA+CGG + chr3_1:90863811-90863830 Msa0387030:intron 30.0%
CGATAAATTAATTGCACGAT+AGG + chr3_1:90863892-90863911 Msa0387030:intron 30.0%
TGGTCAAGGAAAATGATAAA+CGG + chr3_1:90864017-90864036 Msa0387030:intron 30.0%
TAGAAGCAAATTTGATGTCA+AGG + chr3_1:90864125-90864144 Msa0387030:intron 30.0%
AACAAAGAAGTTTGTATTGC+CGG - chr3_1:90864216-90864235 None:intergenic 30.0%
TTGAACTATGTTAGACCATT+CGG - chr3_1:90864352-90864371 None:intergenic 30.0%
GTCTTCAAATCAATTTCTAC+GGG + chr3_1:90864683-90864702 Msa0387030:intron 30.0%
TATAACATGAACTCTAGGTA+TGG - chr3_1:90864802-90864821 None:intergenic 30.0%
ACCTAGAGTTCATGTTATAT+TGG + chr3_1:90864803-90864822 Msa0387030:intron 30.0%
CCTAGAGTTCATGTTATATT+GGG + chr3_1:90864804-90864823 Msa0387030:intron 30.0%
ATGTTATGAAGAATGTGACA+TGG + chr3_1:90864856-90864875 Msa0387030:intron 30.0%
! GTTCTATACTGTTGGAATTT+TGG + chr3_1:90864955-90864974 Msa0387030:intron 30.0%
!! GTTTTTATATTTTGAAGGGG+AGG + chr3_1:90864977-90864996 Msa0387030:intron 30.0%
ATTTGAGTAGGTAAAGAGAA+TGG - chr3_1:90865301-90865320 None:intergenic 30.0%
!! AAATGTACTGGTTAGGAATT+AGG + chr3_1:90865317-90865336 Msa0387030:intron 30.0%
CTCAGTTAAAAAAACAGAGA+CGG - chr3_1:90865666-90865685 None:intergenic 30.0%
TTTGTGCCAACTCTTTAATT+TGG + chr3_1:90865754-90865773 Msa0387030:intron 30.0%
! AGTTTTTAACAGATTCATCG+TGG + chr3_1:90865805-90865824 Msa0387030:intron 30.0%
AATGTAGGTAAAGTTCACAA+GGG - chr3_1:90865836-90865855 None:intergenic 30.0%
AAATGTAGGTAAAGTTCACA+AGG - chr3_1:90865837-90865856 None:intergenic 30.0%
TAGGTTTCTTGCTTCTTAAT+TGG + chr3_1:90866030-90866049 Msa0387030:intron 30.0%
TTTCTTGCTTCTTAATTGGA+CGG + chr3_1:90866034-90866053 Msa0387030:intron 30.0%
!! TTGCTTTTGTTCCTAGATTA+TGG + chr3_1:90866135-90866154 Msa0387030:intron 30.0%
!! ATTTGATTTTATGGACGAGA+AGG + chr3_1:90866327-90866346 Msa0387030:intron 30.0%
CATCAGAATCAATAGGAAAA+CGG - chr3_1:90866353-90866372 None:intergenic 30.0%
TATTTGCCATCAGAATCAAT+AGG - chr3_1:90866360-90866379 None:intergenic 30.0%
!! TGTTACATTTTAGTCAAACG+AGG - chr3_1:90866389-90866408 None:intergenic 30.0%
GAGAAAATGACAACATAAAG+AGG - chr3_1:90866449-90866468 None:intergenic 30.0%
TGTGCCTGATTAAACATAAA+AGG - chr3_1:90866579-90866598 None:intergenic 30.0%
TGCAATAATTGTAGGAAAAC+AGG + chr3_1:90866820-90866839 Msa0387030:CDS 30.0%
GCAATAATTGTAGGAAAACA+GGG + chr3_1:90866821-90866840 Msa0387030:CDS 30.0%
! ATGATTTGTCATAATTGTGG+AGG + chr3_1:90867072-90867091 Msa0387030:CDS 30.0%
!! ACACTTTTTGAACTTGTAAG+TGG + chr3_1:90867346-90867365 Msa0387030:three_prime_UTR 30.0%
!!! GGCACCTTTTTTTAATGATT+GGG + chr3_1:90867424-90867443 Msa0387030:three_prime_UTR 30.0%
!!! GCACCTTTTTTTAATGATTG+GGG + chr3_1:90867425-90867444 Msa0387030:three_prime_UTR 30.0%
CATCCCCAATCATTAAAAAA+AGG - chr3_1:90867431-90867450 None:intergenic 30.0%
!!! CTTTTTTTAATGATTGGGGA+TGG + chr3_1:90867429-90867448 Msa0387030:three_prime_UTR 30.0%
AGTTGAAATGAACGGAAACA+AGG - chr3_1:90863527-90863546 None:intergenic 35.0%
TTTGAATTGTCTCTGTGCTT+GGG + chr3_1:90863745-90863764 Msa0387030:intron 35.0%
! TCGCTAATGGATCATATTAG+TGG - chr3_1:90863875-90863894 None:intergenic 35.0%
AGGAAAATGATAAACGGCAA+AGG + chr3_1:90864023-90864042 Msa0387030:intron 35.0%
AATGAACATTGACAGTGCTT+GGG + chr3_1:90864096-90864115 Msa0387030:intron 35.0%
AATACTGCTTAACCTGATGA+TGG + chr3_1:90864178-90864197 Msa0387030:intron 35.0%
!!! TTTTCTAGTTTCGGATCACA+TGG - chr3_1:90864241-90864260 None:intergenic 35.0%
GAATGGTCTAACATAGTTCA+AGG + chr3_1:90864351-90864370 Msa0387030:intron 35.0%
GGAAACAAATCAGATCATCT+AGG + chr3_1:90864568-90864587 Msa0387030:intron 35.0%
!! GGTTAGCTTGATTGATCAAA+AGG + chr3_1:90864749-90864768 Msa0387030:intron 35.0%
TAGCTTGATTGATCAAAAGG+TGG + chr3_1:90864752-90864771 Msa0387030:intron 35.0%
CTCTAGGTATGGAAAAACAT+TGG - chr3_1:90864791-90864810 None:intergenic 35.0%
CCCAATATAACATGAACTCT+AGG - chr3_1:90864807-90864826 None:intergenic 35.0%
!!! GAGACTTGCTATCAAGTTTT+GGG + chr3_1:90864878-90864897 Msa0387030:intron 35.0%
!! TTTATATTTTGAAGGGGAGG+CGG + chr3_1:90864980-90864999 Msa0387030:intron 35.0%
!! GATTGGTTTAAGGATGATCT+TGG + chr3_1:90865010-90865029 Msa0387030:intron 35.0%
TTTAAGGATGATCTTGGATG+TGG + chr3_1:90865016-90865035 Msa0387030:intron 35.0%
CTTTACCTACTCAAATGTAC+TGG + chr3_1:90865305-90865324 Msa0387030:intron 35.0%
!! AGAGTAAATGAATGGGCTAA+AGG - chr3_1:90865413-90865432 None:intergenic 35.0%
AGTTCTTGCACAAATTGTCT+CGG - chr3_1:90865563-90865582 None:intergenic 35.0%
ATTTGTGCAAGAACTGTAAG+AGG + chr3_1:90865568-90865587 Msa0387030:CDS 35.0%
TAAATTATTTATCGGGGCGA+GGG + chr3_1:90865718-90865737 Msa0387030:intron 35.0%
CAAGGACCAAATTAAAGAGT+TGG - chr3_1:90865763-90865782 None:intergenic 35.0%
! TGAATTGGAAGTACATCCTA+AGG - chr3_1:90865983-90866002 None:intergenic 35.0%
TTTGTGTTATCTTGTACCGT+TGG + chr3_1:90866003-90866022 Msa0387030:intron 35.0%
!!! CGTTTTCCTATTGATTCTGA+TGG + chr3_1:90866351-90866370 Msa0387030:intron 35.0%
TGCCATAATTGCTATAAGCA+GGG + chr3_1:90866763-90866782 Msa0387030:CDS 35.0%
AGAAGGCTTGCAATAATTGT+AGG + chr3_1:90866812-90866831 Msa0387030:CDS 35.0%
ACATTGCAAATTGGGTCATT+TGG - chr3_1:90866865-90866884 None:intergenic 35.0%
CATTGCACACATTGCAAATT+GGG - chr3_1:90866873-90866892 None:intergenic 35.0%
ACATTGCACACATTGCAAAT+TGG - chr3_1:90866874-90866893 None:intergenic 35.0%
! AGTTGTGGGTTACAGTTATA+TGG + chr3_1:90867174-90867193 Msa0387030:three_prime_UTR 35.0%
!! TGAGGACTGATTTTGAATCT+TGG + chr3_1:90867219-90867238 Msa0387030:three_prime_UTR 35.0%
AAAGCTTATGGCCAATACAT+TGG - chr3_1:90867315-90867334 None:intergenic 35.0%
!!! GGGCACCTTTTTTTAATGAT+TGG + chr3_1:90867423-90867442 Msa0387030:three_prime_UTR 35.0%
! GGATGGATTTGACATAATGT+TGG + chr3_1:90867446-90867465 Msa0387030:three_prime_UTR 35.0%
TTCGTCGGAGTTGAAATGAA+CGG - chr3_1:90863535-90863554 None:intergenic 40.0%
TTCTCATGCGACTCTCTATT+TGG + chr3_1:90863623-90863642 Msa0387030:intron 40.0%
CAGAGACAATTCAAACGTGT+AGG - chr3_1:90863740-90863759 None:intergenic 40.0%
GTTTGAATTGTCTCTGTGCT+TGG + chr3_1:90863744-90863763 Msa0387030:intron 40.0%
CGAGGTTGTTAGGATCTATT+GGG - chr3_1:90863991-90864010 None:intergenic 40.0%
ACGAGGTTGTTAGGATCTAT+TGG - chr3_1:90863992-90864011 None:intergenic 40.0%
AGATCCTAACAACCTCGTTA+CGG + chr3_1:90863994-90864013 Msa0387030:intron 40.0%
AATGATAAACGGCAAAGGTC+AGG + chr3_1:90864028-90864047 Msa0387030:intron 40.0%
GAATGAACATTGACAGTGCT+TGG + chr3_1:90864095-90864114 Msa0387030:intron 40.0%
TTACCAAGCTCTCAAATGTG+TGG - chr3_1:90864329-90864348 None:intergenic 40.0%
TGGTCTAACATAGTTCAAGG+AGG + chr3_1:90864354-90864373 Msa0387030:intron 40.0%
TCTAACATAGTTCAAGGAGG+AGG + chr3_1:90864357-90864376 Msa0387030:intron 40.0%
AGGACTGTATGCTATGCATA+AGG - chr3_1:90864726-90864745 None:intergenic 40.0%
GATCAATCAAGCTAACCAGA+AGG - chr3_1:90864746-90864765 None:intergenic 40.0%
!!! GGAGACTTGCTATCAAGTTT+TGG + chr3_1:90864877-90864896 Msa0387030:intron 40.0%
TGACATGATTGATGCGAGAT+GGG + chr3_1:90864913-90864932 Msa0387030:intron 40.0%
!! TTATATTTTGAAGGGGAGGC+GGG + chr3_1:90864981-90865000 Msa0387030:intron 40.0%
CTTACAGGAGAGATTCAAGT+CGG + chr3_1:90865241-90865260 Msa0387030:CDS 40.0%
TTACAGGAGAGATTCAAGTC+GGG + chr3_1:90865242-90865261 Msa0387030:CDS 40.0%
CCTAACCAGTACATTTGAGT+AGG - chr3_1:90865313-90865332 None:intergenic 40.0%
!! CCTACTCAAATGTACTGGTT+AGG + chr3_1:90865310-90865329 Msa0387030:intron 40.0%
!! GTACTGGTTAGGAATTAGGA+TGG + chr3_1:90865321-90865340 Msa0387030:intron 40.0%
AAAGAACTTATCAGAGCAGC+AGG - chr3_1:90865464-90865483 None:intergenic 40.0%
TATGTGTGCATTTCTCACAG+CGG + chr3_1:90865509-90865528 Msa0387030:intron 40.0%
CATTCTCTAGCATAATGACC+AGG - chr3_1:90865594-90865613 None:intergenic 40.0%
TAGAGAATGCCCTAATGTTG+CGG + chr3_1:90865605-90865624 Msa0387030:CDS 40.0%
GTAAATTATTTATCGGGGCG+AGG + chr3_1:90865717-90865736 Msa0387030:intron 40.0%
AGGTAAAGTTCACAAGGGAA+TGG - chr3_1:90865831-90865850 None:intergenic 40.0%
TACATCCTAAGGTGACATCA+TGG - chr3_1:90865972-90865991 None:intergenic 40.0%
!! ATTGGACGGTGGTTGATTTT+AGG + chr3_1:90866048-90866067 Msa0387030:intron 40.0%
ACTCATCTGATGTCTCTTGA+AGG - chr3_1:90866226-90866245 None:intergenic 40.0%
GATGAGTTGTCCGAAAAGAT+TGG + chr3_1:90866239-90866258 Msa0387030:intron 40.0%
! ATATTTGCTGACAAGTGTCG+TGG + chr3_1:90866511-90866530 Msa0387030:intron 40.0%
TTCTTTGCAATTCCAGCACA+CGG - chr3_1:90866626-90866645 None:intergenic 40.0%
TGCTGGAATTGCAAAGAATC+TGG + chr3_1:90866628-90866647 Msa0387030:CDS 40.0%
AGCAATTATGGCACAACCTT+AGG - chr3_1:90866756-90866775 None:intergenic 40.0%
GTGCCATAATTGCTATAAGC+AGG + chr3_1:90866762-90866781 Msa0387030:CDS 40.0%
TGGTACATTCAACAGCAATG+TGG - chr3_1:90866789-90866808 None:intergenic 40.0%
TGTTGAATGTACCAACGAGA+AGG + chr3_1:90866795-90866814 Msa0387030:CDS 40.0%
ATTATTGCAAGCCTTCTCGT+TGG - chr3_1:90866809-90866828 None:intergenic 40.0%
TGCAATGTGTGCAATGTTTC+TGG + chr3_1:90866877-90866896 Msa0387030:CDS 40.0%
TGTCCAAAATCCGACGTTAT+TGG + chr3_1:90866916-90866935 Msa0387030:CDS 40.0%
! TCTCCAATAACGTCGGATTT+TGG - chr3_1:90866922-90866941 None:intergenic 40.0%
AGCAATTTGGTCACATGAGT+CGG + chr3_1:90867031-90867050 Msa0387030:CDS 40.0%
! TACTAATGGGTGACAAGTTG+TGG + chr3_1:90867159-90867178 Msa0387030:exon 40.0%
! ACTAATGGGTGACAAGTTGT+GGG + chr3_1:90867160-90867179 Msa0387030:exon 40.0%
! TGTGGGTTACAGTTATATGG+TGG + chr3_1:90867177-90867196 Msa0387030:three_prime_UTR 40.0%
! GCTTTATTGCTCTTTGAACC+TGG + chr3_1:90867256-90867275 Msa0387030:three_prime_UTR 40.0%
! GGATGATGATGCCAATGTAT+TGG + chr3_1:90867301-90867320 Msa0387030:three_prime_UTR 40.0%
AAGCTGTGGAAGGCGAAATA+AGG + chr3_1:90863553-90863572 Msa0387030:five_prime_UTR 45.0%
CATCATTCAACGCCATGAGA+CGG + chr3_1:90864151-90864170 Msa0387030:intron 45.0%
TCATGGCAAGAACCATCATC+AGG - chr3_1:90864193-90864212 None:intergenic 45.0%
ATGATGGTTCTTGCCATGAC+CGG + chr3_1:90864194-90864213 Msa0387030:intron 45.0%
GAAGTTTGTATTGCCGGTCA+TGG - chr3_1:90864210-90864229 None:intergenic 45.0%
! TGAGTTGTTGTTCGAACGCT+AGG - chr3_1:90864279-90864298 None:intergenic 45.0%
CTCTCAAATGTGTGGCTTGA+TGG - chr3_1:90864321-90864340 None:intergenic 45.0%
AAGCCACACATTTGAGAGCT+TGG + chr3_1:90864323-90864342 Msa0387030:intron 45.0%
! TTGAGAGCTTGGTAACCGAA+TGG + chr3_1:90864334-90864353 Msa0387030:intron 45.0%
TGCATAGCATACAGTCCTTC+TGG + chr3_1:90864728-90864747 Msa0387030:intron 45.0%
!!! CAAGTTTTGGGTCCTGAGAA+CGG + chr3_1:90864890-90864909 Msa0387030:intron 45.0%
TCAATCATGTCACCGTTCTC+AGG - chr3_1:90864905-90864924 None:intergenic 45.0%
GTGACATGATTGATGCGAGA+TGG + chr3_1:90864912-90864931 Msa0387030:intron 45.0%
!! TATATTTTGAAGGGGAGGCG+GGG + chr3_1:90864982-90865001 Msa0387030:intron 45.0%
TCTTGGATGTGGTTGTGATG+TGG + chr3_1:90865027-90865046 Msa0387030:intron 45.0%
GTGGCTGATTGTGTATGTTG+TGG + chr3_1:90865063-90865082 Msa0387030:five_prime_UTR 45.0%
GCTGATTGTGTATGTTGTGG+TGG + chr3_1:90865066-90865085 Msa0387030:five_prime_UTR 45.0%
GATTGTGTATGTTGTGGTGG+AGG + chr3_1:90865069-90865088 Msa0387030:five_prime_UTR 45.0%
AGCGAATCTTACGGATTCCA+GGG - chr3_1:90865194-90865213 None:intergenic 45.0%
GTCGATCAGAGCGAATCTTA+CGG - chr3_1:90865203-90865222 None:intergenic 45.0%
CGACTTGAATCTCTCCTGTA+AGG - chr3_1:90865243-90865262 None:intergenic 45.0%
TACAGGAGAGATTCAAGTCG+GGG + chr3_1:90865243-90865262 Msa0387030:CDS 45.0%
TGGTTAGGAATTAGGATGGC+TGG + chr3_1:90865325-90865344 Msa0387030:intron 45.0%
AAACAGTGCTGTGCTAGAAG+AGG + chr3_1:90865357-90865376 Msa0387030:intron 45.0%
TGTGGCAAACCGCAACATTA+GGG - chr3_1:90865617-90865636 None:intergenic 45.0%
TTGTGGCAAACCGCAACATT+AGG - chr3_1:90865618-90865637 None:intergenic 45.0%
AATTGTGGTCTTCCAGGGTA+TGG + chr3_1:90865636-90865655 Msa0387030:intron 45.0%
!! GATTTTGGTACCAGTCAGCA+TGG + chr3_1:90865890-90865909 Msa0387030:intron 45.0%
TAAGGTATGTCCATGCTGAC+TGG - chr3_1:90865903-90865922 None:intergenic 45.0%
ACATCATGGACATGCAAGCA+AGG - chr3_1:90865958-90865977 None:intergenic 45.0%
CATGTCCATGATGTCACCTT+AGG + chr3_1:90865964-90865983 Msa0387030:intron 45.0%
! ATCTTGTACCGTTGGTGCTT+AGG + chr3_1:90866011-90866030 Msa0387030:intron 45.0%
GCAAGAAACCTAAGCACCAA+CGG - chr3_1:90866022-90866041 None:intergenic 45.0%
CTTGCTTCTTAATTGGACGG+TGG + chr3_1:90866037-90866056 Msa0387030:intron 45.0%
TTGCAAAGAATCTGGCCACA+TGG + chr3_1:90866636-90866655 Msa0387030:CDS 45.0%
GCCAGCAATTGTCCAAATGA+GGG + chr3_1:90866658-90866677 Msa0387030:CDS 45.0%
GGCCCTGCTTATAGCAATTA+TGG - chr3_1:90866768-90866787 None:intergenic 45.0%
! TTGTAGGAAAACAGGGCACT+TGG + chr3_1:90866828-90866847 Msa0387030:CDS 45.0%
!! GTGCAATGTTTCTGGACACT+TGG + chr3_1:90866885-90866904 Msa0387030:CDS 45.0%
TCTGTGGTCTCCAATAACGT+CGG - chr3_1:90866929-90866948 None:intergenic 45.0%
GACTCATGTGACCAAATTGC+TGG - chr3_1:90867032-90867051 None:intergenic 45.0%
GCAATTTGGTCACATGAGTC+GGG + chr3_1:90867032-90867051 Msa0387030:CDS 45.0%
TGTCATAATTGTGGAGGTCG+TGG + chr3_1:90867078-90867097 Msa0387030:CDS 45.0%
GATCCACAAAACGACCTGAA+GGG - chr3_1:90867122-90867141 None:intergenic 45.0%
!! ACCCTAGTAGGAGGTACTAA+TGG + chr3_1:90867145-90867164 Msa0387030:CDS 45.0%
CCCATTAGTACCTCCTACTA+GGG - chr3_1:90867149-90867168 None:intergenic 45.0%
!! CCCTAGTAGGAGGTACTAAT+GGG + chr3_1:90867146-90867165 Msa0387030:exon 45.0%
ACCCATTAGTACCTCCTACT+AGG - chr3_1:90867150-90867169 None:intergenic 45.0%
TTTCAACTCCGACGAAGCTG+TGG + chr3_1:90863539-90863558 Msa0387030:five_prime_UTR 50.0%
TTGCACGATAGGCACCAAAG+AGG + chr3_1:90863903-90863922 Msa0387030:intron 50.0%
TGCACGATAGGCACCAAAGA+GGG + chr3_1:90863904-90863923 Msa0387030:intron 50.0%
TCCTAACAACCTCGTTACGG+TGG + chr3_1:90863997-90864016 Msa0387030:intron 50.0%
ACCACCGTAACGAGGTTGTT+AGG - chr3_1:90864001-90864020 None:intergenic 50.0%
TTTCCTTGACCACCGTAACG+AGG - chr3_1:90864009-90864028 None:intergenic 50.0%
GCAGTATTGTCTCCGTCTCA+TGG - chr3_1:90864166-90864185 None:intergenic 50.0%
!! ATATTTTGAAGGGGAGGCGG+GGG + chr3_1:90864983-90865002 Msa0387030:intron 50.0%
!! CGGGGGTTTGGATTGGTTTA+AGG + chr3_1:90865000-90865019 Msa0387030:intron 50.0%
GATGTGGTTGTGATGTGGAC+AGG + chr3_1:90865032-90865051 Msa0387030:intron 50.0%
! TGTGTATGTTGTGGTGGAGG+TGG + chr3_1:90865072-90865091 Msa0387030:five_prime_UTR 50.0%
GAGCGAATCTTACGGATTCC+AGG - chr3_1:90865195-90865214 None:intergenic 50.0%
GAGATTCAAGTCGGGGTTTC+AGG + chr3_1:90865250-90865269 Msa0387030:CDS 50.0%
TGCAAGAACTGTAAGAGGCC+TGG + chr3_1:90865573-90865592 Msa0387030:CDS 50.0%
GTTGCGGTTTGCCACAATTG+TGG + chr3_1:90865621-90865640 Msa0387030:CDS 50.0%
TGCCACAATTGTGGTCTTCC+AGG + chr3_1:90865630-90865649 Msa0387030:CDS 50.0%
GCCACAATTGTGGTCTTCCA+GGG + chr3_1:90865631-90865650 Msa0387030:CDS 50.0%
ACCCTGGAAGACCACAATTG+TGG - chr3_1:90865635-90865654 None:intergenic 50.0%
AGAGACGGAATTCCATACCC+TGG - chr3_1:90865651-90865670 None:intergenic 50.0%
ATTCCAGCACACGGATTTCG+TGG - chr3_1:90866617-90866636 None:intergenic 50.0%
TTGGACAATTGCTGGCCATG+TGG - chr3_1:90866654-90866673 None:intergenic 50.0%
GGCCAGCAATTGTCCAAATG+AGG + chr3_1:90866657-90866676 Msa0387030:CDS 50.0%
GCCCTCATTTGGACAATTGC+TGG - chr3_1:90866662-90866681 None:intergenic 50.0%
GTGTGGCAAATGCCCTCATT+TGG - chr3_1:90866673-90866692 None:intergenic 50.0%
TGCCACACCTGTGGTAAAAC+TGG + chr3_1:90866685-90866704 Msa0387030:CDS 50.0%
TAAAACTGGCCACCGTGCTA+GGG + chr3_1:90866699-90866718 Msa0387030:CDS 50.0%
GACGTTATTGGAGACCACAG+AGG + chr3_1:90866928-90866947 Msa0387030:CDS 50.0%
AGTTCCTGCACACGACATCA+CGG - chr3_1:90867008-90867027 None:intergenic 50.0%
TGCAGGAACTGCCAGCAATT+TGG + chr3_1:90867018-90867037 Msa0387030:CDS 50.0%
TTGGCATATGAGTGCCCTTC+AGG + chr3_1:90867105-90867124 Msa0387030:CDS 50.0%
CGATCCACAAAACGACCTGA+AGG - chr3_1:90867123-90867142 None:intergenic 50.0%
TTGTGGATCGCTACCCTAGT+AGG + chr3_1:90867133-90867152 Msa0387030:CDS 50.0%
AACCTGGTGAAGTCACGACA+AGG + chr3_1:90867272-90867291 Msa0387030:three_prime_UTR 50.0%
GAAGTCACGACAAGGAGTCA+AGG + chr3_1:90867280-90867299 Msa0387030:three_prime_UTR 50.0%
AACTCCGACGAAGCTGTGGA+AGG + chr3_1:90863543-90863562 Msa0387030:five_prime_UTR 55.0%
TTCGCCTTCCACAGCTTCGT+CGG - chr3_1:90863550-90863569 None:intergenic 55.0%
CAACCTCGTTACGGTGGTCA+AGG + chr3_1:90864003-90864022 Msa0387030:intron 55.0%
GGTCAGGACACACTTGTACG+TGG + chr3_1:90864044-90864063 Msa0387030:intron 55.0%
GTGGTTGTGATGTGGACAGG+AGG + chr3_1:90865035-90865054 Msa0387030:intron 55.0%
GTTGTGATGTGGACAGGAGG+AGG + chr3_1:90865038-90865057 Msa0387030:intron 55.0%
TGGAGGTGGTTGCTGATCAG+TGG + chr3_1:90865086-90865105 Msa0387030:five_prime_UTR 55.0%
TTCTGCTCCTGCTCCTGCTT+CGG - chr3_1:90865164-90865183 None:intergenic 55.0%
!! CCTGTAAGGAGCATCGCGAT+AGG - chr3_1:90865229-90865248 None:intergenic 55.0%
CCTATCGCGATGCTCCTTAC+AGG + chr3_1:90865226-90865245 Msa0387030:CDS 55.0%
! GGCCAGTTTTACCACAGGTG+TGG - chr3_1:90866690-90866709 None:intergenic 55.0%
! ACGGTGGCCAGTTTTACCAC+AGG - chr3_1:90866695-90866714 None:intergenic 55.0%
GTAAAACTGGCCACCGTGCT+AGG + chr3_1:90866698-90866717 Msa0387030:CDS 55.0%
ATTGGAGACCACAGAGGCAG+AGG + chr3_1:90866934-90866953 Msa0387030:CDS 55.0%
GTTACCGTGATGTCGTGTGC+AGG + chr3_1:90867001-90867020 Msa0387030:CDS 55.0%
TCACATGAGTCGGGACTGCA+TGG + chr3_1:90867041-90867060 Msa0387030:CDS 55.0%
CACATGAGTCGGGACTGCAT+GGG + chr3_1:90867042-90867061 Msa0387030:CDS 55.0%
ACATGAGTCGGGACTGCATG+GGG + chr3_1:90867043-90867062 Msa0387030:CDS 55.0%
TTGTGGAGGTCGTGGTCACT+TGG + chr3_1:90867086-90867105 Msa0387030:CDS 55.0%
!! GTGCCCTTCAGGTCGTTTTG+TGG + chr3_1:90867116-90867135 Msa0387030:CDS 55.0%
TGGATCGCTACCCTAGTAGG+AGG + chr3_1:90867136-90867155 Msa0387030:CDS 55.0%
CTCCTTGTCGTGACTTCACC+AGG - chr3_1:90867277-90867296 None:intergenic 55.0%
ATGTGGACAGGAGGAGGCAG+TGG + chr3_1:90865044-90865063 Msa0387030:intron 60.0%
TGAGTTCAGACAGCCGCAGC+CGG + chr3_1:90865136-90865155 Msa0387030:CDS 60.0%
AGGAGCAGAAGTCGTAGCCC+TGG + chr3_1:90865174-90865193 Msa0387030:CDS 60.0%
GCTCCACGAAATCCGTGTGC+TGG + chr3_1:90866611-90866630 Msa0387030:CDS 60.0%
!! GAGGGCATTTGCCACACCTG+TGG + chr3_1:90866676-90866695 Msa0387030:CDS 60.0%
GAGCTGAGCACTCCCTAGCA+CGG - chr3_1:90866714-90866733 None:intergenic 60.0%
TCAGCTCCATCACTGCCTCC+AGG + chr3_1:90866727-90866746 Msa0387030:CDS 60.0%
CAGCTCCATCACTGCCTCCA+GGG + chr3_1:90866728-90866747 Msa0387030:CDS 60.0%
AGCTCCATCACTGCCTCCAG+GGG + chr3_1:90866729-90866748 Msa0387030:CDS 60.0%
CACAACCTTAGGTCCCCTGG+AGG - chr3_1:90866745-90866764 None:intergenic 60.0%
TGGCACAACCTTAGGTCCCC+TGG - chr3_1:90866748-90866767 None:intergenic 60.0%
TTGAAGGGGAGGCGGGGGTT+TGG + chr3_1:90864988-90865007 Msa0387030:intron 65.0%
TCCTGCTCCTGCTTCGGCTC+CGG - chr3_1:90865158-90865177 None:intergenic 65.0%
TCGGGGCGAGGGATGCAAGT+TGG + chr3_1:90865729-90865748 Msa0387030:intron 65.0%
CTGAGCACTCCCTAGCACGG+TGG - chr3_1:90866711-90866730 None:intergenic 65.0%
AGGTCCCCTGGAGGCAGTGA+TGG - chr3_1:90866736-90866755 None:intergenic 65.0%
CACTGCCTCCAGGGGACCTA+AGG + chr3_1:90866737-90866756 Msa0387030:CDS 65.0%
GGAAGCTGCCTCTGCCTCTG+TGG - chr3_1:90866945-90866964 None:intergenic 65.0%
AGAGGCAGAGGCAGCTTCCG+TGG + chr3_1:90866946-90866965 Msa0387030:CDS 65.0%
AGAGGCAGCTTCCGTGGTGC+TGG + chr3_1:90866952-90866971 Msa0387030:CDS 65.0%
!! AGCTTCCGTGGTGCTGGTGG+TGG + chr3_1:90866958-90866977 Msa0387030:CDS 65.0%
!! TTCCGTGGTGCTGGTGGTGG+TGG + chr3_1:90866961-90866980 Msa0387030:CDS 65.0%
CACCACCACCACCAGCACCA+CGG - chr3_1:90866966-90866985 None:intergenic 65.0%
!! GGTGGTGGTGGTGTTGCTGC+TGG + chr3_1:90866973-90866992 Msa0387030:CDS 65.0%
!! GGTGGTGGTGTTGCTGCTGG+TGG + chr3_1:90866976-90866995 Msa0387030:CDS 65.0%
!! GGTGGTGTTGCTGCTGGTGG+TGG + chr3_1:90866979-90866998 Msa0387030:CDS 65.0%
GGGGAGGCGGGGGTTTGGAT+TGG + chr3_1:90864993-90865012 Msa0387030:intron 70.0%
TCCTGCTTCGGCTCCGGCTG+CGG - chr3_1:90865152-90865171 None:intergenic 70.0%
! GGCAGCTTCCGTGGTGCTGG+TGG + chr3_1:90866955-90866974 Msa0387030:CDS 70.0%
GCCGGAGCCGAAGCAGGAGC+AGG + chr3_1:90865154-90865173 Msa0387030:CDS 75.0%
! GCCGCAGCCGGAGCCGAAGC+AGG + chr3_1:90865148-90865167 Msa0387030:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 90863439 90867507 90863439 ID=Msa0387030;Name=Msa0387030
chr3_1 mRNA 90863439 90867507 90863439 ID=Msa0387030-mRNA-1;Parent=Msa0387030;Name=Msa0387030-mRNA-1;_AED=0.38;_eAED=0.38;_QI=217|1|1|1|0.66|0.5|4|343|266
chr3_1 exon 90863439 90863574 90863439 ID=Msa0387030-mRNA-1:exon:25189;Parent=Msa0387030-mRNA-1
chr3_1 exon 90865054 90865271 90865054 ID=Msa0387030-mRNA-1:exon:25190;Parent=Msa0387030-mRNA-1
chr3_1 exon 90865560 90865652 90865560 ID=Msa0387030-mRNA-1:exon:25191;Parent=Msa0387030-mRNA-1
chr3_1 exon 90866594 90867507 90866594 ID=Msa0387030-mRNA-1:exon:25192;Parent=Msa0387030-mRNA-1
chr3_1 five_prime_UTR 90863439 90863574 90863439 ID=Msa0387030-mRNA-1:five_prime_utr;Parent=Msa0387030-mRNA-1
chr3_1 five_prime_UTR 90865054 90865134 90865054 ID=Msa0387030-mRNA-1:five_prime_utr;Parent=Msa0387030-mRNA-1
chr3_1 CDS 90865135 90865271 90865135 ID=Msa0387030-mRNA-1:cds;Parent=Msa0387030-mRNA-1
chr3_1 CDS 90865560 90865652 90865560 ID=Msa0387030-mRNA-1:cds;Parent=Msa0387030-mRNA-1
chr3_1 CDS 90866594 90867164 90866594 ID=Msa0387030-mRNA-1:cds;Parent=Msa0387030-mRNA-1
chr3_1 three_prime_UTR 90867165 90867507 90867165 ID=Msa0387030-mRNA-1:three_prime_utr;Parent=Msa0387030-mRNA-1
Gene Sequence

>Msa0387030

ATGAGTTCAGACAGCCGCAGCCGGAGCCGAAGCAGGAGCAGGAGCAGAAGTCGTAGCCCTGGAATCCGTAAGATTCGCTCTGATCGACATTCCTATCGCGATGCTCCTTACAGGAGAGATTCAAGTCGGGGTTTCAGCCGAGACAATTTGTGCAAGAACTGTAAGAGGCCTGGTCATTATGCTAGAGAATGCCCTAATGTTGCGGTTTGCCACAATTGTGGTCTTCCAGGGCACATTGCTTCTGAATGCTCCACGAAATCCGTGTGCTGGAATTGCAAAGAATCTGGCCACATGGCCAGCAATTGTCCAAATGAGGGCATTTGCCACACCTGTGGTAAAACTGGCCACCGTGCTAGGGAGTGCTCAGCTCCATCACTGCCTCCAGGGGACCTAAGGTTGTGCCATAATTGCTATAAGCAGGGCCACATTGCTGTTGAATGTACCAACGAGAAGGCTTGCAATAATTGTAGGAAAACAGGGCACTTGGCACGTGATTGTCCAAATGACCCAATTTGCAATGTGTGCAATGTTTCTGGACACTTGGCTAGACAATGTCCAAAATCCGACGTTATTGGAGACCACAGAGGCAGAGGCAGCTTCCGTGGTGCTGGTGGTGGTGGTGTTGCTGCTGGTGGTGGTTACCGTGATGTCGTGTGCAGGAACTGCCAGCAATTTGGTCACATGAGTCGGGACTGCATGGGGCCCTTGATGATTTGTCATAATTGTGGAGGTCGTGGTCACTTGGCATATGAGTGCCCTTCAGGTCGTTTTGTGGATCGCTACCCTAGTAGGAGGTACTAA
Protein sequence

>Msa0387030

MSSDSRSRSRSRSRSRSRSPGIRKIRSDRHSYRDAPYRRDSSRGFSRDNLCKNCKRPGHYARECPNVAVCHNCGLPGHIASECSTKSVCWNCKESGHMASNCPNEGICHTCGKTGHRARECSAPSLPPGDLRLCHNCYKQGHIAVECTNEKACNNCRKTGHLARDCPNDPICNVCNVSGHLARQCPKSDVIGDHRGRGSFRGAGGGGVAAGGGYRDVVCRNCQQFGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFVDRYPSRRY*