AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0523970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0523970 MtrunA17_Chr3g0145151 97.398 269 4 2 1 266 1 269 0.0 516
Msa0523970 MtrunA17_Chr3g0145141 81.855 248 39 2 20 266 25 267 3.85e-143 402
Msa0523970 MtrunA17_Chr3g0080991 31.064 235 91 7 70 252 1459 1674 1.69e-18 85.1
Msa0523970 MtrunA17_Chr3g0080991 32.105 190 77 6 51 188 1488 1677 1.26e-16 79.7
Msa0523970 MtrunA17_Chr3g0080991 28.509 228 73 6 51 188 1986 2213 5.88e-14 71.6
Msa0523970 MtrunA17_Chr3g0080991 29.787 235 88 6 89 254 1986 2212 2.84e-12 66.6
Msa0523970 MtrunA17_Chr5g0422121 41.270 63 33 1 89 151 277 335 9.02e-12 65.1
Msa0523970 MtrunA17_Chr5g0422121 37.975 79 37 3 36 102 253 331 2.13e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0523970 AT1G75560.2 58.871 248 81 6 23 266 27 257 2.59e-90 268
Msa0523970 AT1G75560.1 58.871 248 81 6 23 266 27 257 2.59e-90 268
Msa0523970 AT4G36020.1 31.308 214 76 7 70 232 102 295 4.36e-18 82.4
Msa0523970 AT4G36020.1 33.333 189 81 9 89 253 102 269 9.06e-14 70.1
Msa0523970 AT4G36020.3 31.308 214 76 7 70 232 102 295 4.36e-18 82.4
Msa0523970 AT4G36020.3 33.333 189 81 9 89 253 102 269 9.06e-14 70.1
Msa0523970 AT4G36020.2 32.099 162 64 6 70 186 102 262 1.68e-15 74.7
Msa0523970 AT4G36020.2 32.374 139 64 4 51 168 134 263 8.37e-14 70.1

Find 131 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATGTGTGCAATGTTTC+TGG 0.171261 3_4:+77429723 Msa0523970:CDS
GAGATTCAAGTCGGGGTTTC+AGG 0.187299 3_4:+77428097 Msa0523970:CDS
ACATTGCACACATTGCAAAT+TGG 0.240976 3_4:-77429717 None:intergenic
TCTCCAATAACGTCGGATTT+TGG 0.258901 3_4:-77429765 None:intergenic
ATAATGTTGGTAAGCTTATA+TGG 0.271435 3_4:+77430305 Msa0523970:three_prime_UTR
TGTCCAAAATCCGACGTTAT+TGG 0.272950 3_4:+77429762 Msa0523970:CDS
TGCCACAATTGTGGTCTTCC+AGG 0.279746 3_4:+77428477 Msa0523970:CDS
GGCCCTGCTTATAGCAATTA+TGG 0.285159 3_4:-77429611 None:intergenic
TGCAATAATTGTAGGAAAAC+AGG 0.288832 3_4:+77429666 Msa0523970:CDS
ACATTGCAAATTGGGTCATT+TGG 0.303614 3_4:-77429708 None:intergenic
TTGTGGCAAACCGCAACATT+AGG 0.314490 3_4:-77428462 None:intergenic
CATTGCACACATTGCAAATT+GGG 0.319988 3_4:-77429716 None:intergenic
AGTTGTGGGTTACAGTTATA+TGG 0.333154 3_4:+77430020 Msa0523970:three_prime_UTR
GCCCTCATTTGGACAATTGC+TGG 0.348692 3_4:-77429505 None:intergenic
GAGCGAATCTTACGGATTCC+AGG 0.354456 3_4:-77428039 None:intergenic
ACCCTAGTAGGAGGTACTAA+TGG 0.356165 3_4:+77429991 Msa0523970:CDS
CCTATCGCGATGCTCCTTAC+AGG 0.358181 3_4:+77428073 Msa0523970:CDS
GCCGCAGCCGGAGCCGAAGC+AGG 0.358355 3_4:+77427995 Msa0523970:CDS
TTGGCATATGAGTGCCCTTC+AGG 0.359293 3_4:+77429951 Msa0523970:CDS
TGCCACACCTGTGGTAAAAC+TGG 0.367658 3_4:+77429531 Msa0523970:CDS
TGCAGGAACTGCCAGCAATT+TGG 0.368408 3_4:+77429864 Msa0523970:CDS
AAGCTGTGGAAGGCGAAATA+AGG 0.369661 3_4:+77426399 Msa0523970:five_prime_UTR
GCCGGAGCCGAAGCAGGAGC+AGG 0.383188 3_4:+77428001 Msa0523970:CDS
GGTGGTGGTGGTGTTGCTGC+TGG 0.383192 3_4:+77429819 Msa0523970:CDS
TCCTGCTTCGGCTCCGGCTG+CGG 0.383664 3_4:-77427996 None:intergenic
CTCCTTGTCGTGACTTCACC+AGG 0.398749 3_4:-77430120 None:intergenic
TCAGCTCCATCACTGCCTCC+AGG 0.400340 3_4:+77429573 Msa0523970:CDS
GACTCATGTGACCAAATTGC+TGG 0.414152 3_4:-77429875 None:intergenic
TGTGGCAAACCGCAACATTA+GGG 0.414298 3_4:-77428461 None:intergenic
TTCTGCTCCTGCTCCTGCTT+CGG 0.420789 3_4:-77428008 None:intergenic
AGCAATTATGGCACAACCTT+AGG 0.428281 3_4:-77429599 None:intergenic
AGCTTCCGTGGTGCTGGTGG+TGG 0.429541 3_4:+77429804 Msa0523970:CDS
ACCCATTAGTACCTCCTACT+AGG 0.431893 3_4:-77429993 None:intergenic
CCCTAGTAGGAGGTACTAAT+GGG 0.433528 3_4:+77429992 Msa0523970:exon
GTGTGGCAAATGCCCTCATT+TGG 0.436297 3_4:-77429516 None:intergenic
AGAAGGCTTGCAATAATTGT+AGG 0.438057 3_4:+77429658 Msa0523970:CDS
GGTGGTGTTGCTGCTGGTGG+TGG 0.439125 3_4:+77429825 Msa0523970:CDS
CAGCTCCATCACTGCCTCCA+GGG 0.439506 3_4:+77429574 Msa0523970:CDS
GCTTTATTGCTCTTTGAACC+TGG 0.442210 3_4:+77430102 Msa0523970:three_prime_UTR
CACTGCCTCCAGGGGACCTA+AGG 0.442515 3_4:+77429583 Msa0523970:CDS
GTAAAACTGGCCACCGTGCT+AGG 0.444767 3_4:+77429544 Msa0523970:CDS
TCCTGCTCCTGCTTCGGCTC+CGG 0.445406 3_4:-77428002 None:intergenic
AGAGGCAGCTTCCGTGGTGC+TGG 0.452093 3_4:+77429798 Msa0523970:CDS
TACTAATGGGTGACAAGTTG+TGG 0.453854 3_4:+77430005 Msa0523970:exon
AGGTCCCCTGGAGGCAGTGA+TGG 0.459660 3_4:-77429579 None:intergenic
TTCCGTGGTGCTGGTGGTGG+TGG 0.461393 3_4:+77429807 Msa0523970:CDS
TGTGTATGTTGTGGTGGAGG+TGG 0.465293 3_4:+77427919 Msa0523970:five_prime_UTR
TCACATGAGTCGGGACTGCA+TGG 0.471053 3_4:+77429887 Msa0523970:CDS
GTGCCATAATTGCTATAAGC+AGG 0.473079 3_4:+77429608 Msa0523970:CDS
TGCTGGAATTGCAAAGAATC+TGG 0.480642 3_4:+77429474 Msa0523970:CDS
TTCGCCTTCCACAGCTTCGT+CGG 0.486258 3_4:-77426393 None:intergenic
AGCTCCATCACTGCCTCCAG+GGG 0.487991 3_4:+77429575 Msa0523970:CDS
GCCACAATTGTGGTCTTCCA+GGG 0.490979 3_4:+77428478 Msa0523970:CDS
AGCAATTTGGTCACATGAGT+CGG 0.491345 3_4:+77429877 Msa0523970:CDS
GGTGGTGGTGTTGCTGCTGG+TGG 0.497840 3_4:+77429822 Msa0523970:CDS
ATTGGAGACCACAGAGGCAG+AGG 0.500245 3_4:+77429780 Msa0523970:CDS
GCAATTTGGTCACATGAGTC+GGG 0.501366 3_4:+77429878 Msa0523970:CDS
TGGCACAACCTTAGGTCCCC+TGG 0.501822 3_4:-77429591 None:intergenic
TTGTGGATCGCTACCCTAGT+AGG 0.503649 3_4:+77429979 Msa0523970:CDS
CGACTTGAATCTCTCCTGTA+AGG 0.503873 3_4:-77428087 None:intergenic
GTCGATCAGAGCGAATCTTA+CGG 0.504290 3_4:-77428047 None:intergenic
ATTTGTGCAAGAACTGTAAG+AGG 0.505203 3_4:+77428415 Msa0523970:CDS
AGGAGCAGAAGTCGTAGCCC+TGG 0.505589 3_4:+77428021 Msa0523970:CDS
ATTCCAGCACACGGATTTCG+TGG 0.510855 3_4:-77429460 None:intergenic
GCTCCACGAAATCCGTGTGC+TGG 0.517660 3_4:+77429457 Msa0523970:CDS
TGTCATAATTGTGGAGGTCG+TGG 0.518556 3_4:+77429924 Msa0523970:CDS
GGCCAGCAATTGTCCAAATG+AGG 0.519279 3_4:+77429503 Msa0523970:CDS
TGCAAGAACTGTAAGAGGCC+TGG 0.521551 3_4:+77428420 Msa0523970:CDS
TGAGTTCAGACAGCCGCAGC+CGG 0.525876 3_4:+77427983 Msa0523970:CDS
TTGATGATTTGTCATAATTG+TGG 0.526195 3_4:+77429915 Msa0523970:CDS
TTACAGGAGAGATTCAAGTC+GGG 0.528704 3_4:+77428089 Msa0523970:CDS
CCCATTAGTACCTCCTACTA+GGG 0.531664 3_4:-77429992 None:intergenic
AGTTCTTGCACAAATTGTCT+CGG 0.531667 3_4:-77428407 None:intergenic
CACATGAGTCGGGACTGCAT+GGG 0.532181 3_4:+77429888 Msa0523970:CDS
GGATGGATTTGACATAATGT+TGG 0.534554 3_4:+77430292 Msa0523970:three_prime_UTR
TTGTGGAGGTCGTGGTCACT+TGG 0.535248 3_4:+77429932 Msa0523970:CDS
GGATGATGATGCCAATGTAT+TGG 0.536748 3_4:+77430147 Msa0523970:three_prime_UTR
CACCACCACCACCAGCACCA+CGG 0.540558 3_4:-77429809 None:intergenic
ACAATTATGACAAATCATCA+AGG 0.542498 3_4:-77429913 None:intergenic
ATGTGGACAGGAGGAGGCAG+TGG 0.543541 3_4:+77427891 Msa0523970:intron
GATTGTGTATGTTGTGGTGG+AGG 0.546696 3_4:+77427916 Msa0523970:five_prime_UTR
AGAGGCAGAGGCAGCTTCCG+TGG 0.547129 3_4:+77429792 Msa0523970:CDS
GTGCAATGTTTCTGGACACT+TGG 0.553409 3_4:+77429731 Msa0523970:CDS
TTCTTTGCAATTCCAGCACA+CGG 0.554860 3_4:-77429469 None:intergenic
AAAGCTTATGGCCAATACAT+TGG 0.555890 3_4:-77430158 None:intergenic
ACATGAGTCGGGACTGCATG+GGG 0.562868 3_4:+77429889 Msa0523970:CDS
TTGTAGGAAAACAGGGCACT+TGG 0.571612 3_4:+77429674 Msa0523970:CDS
AGCGAATCTTACGGATTCCA+GGG 0.573852 3_4:-77428038 None:intergenic
TGTGGGTTACAGTTATATGG+TGG 0.574918 3_4:+77430023 Msa0523970:three_prime_UTR
GGCAGCTTCCGTGGTGCTGG+TGG 0.577253 3_4:+77429801 Msa0523970:CDS
TTTCAACTCCGACGAAGCTG+TGG 0.579508 3_4:+77426385 Msa0523970:five_prime_UTR
ACTAATGGGTGACAAGTTGT+GGG 0.580812 3_4:+77430006 Msa0523970:exon
TAAAACTGGCCACCGTGCTA+GGG 0.581461 3_4:+77429545 Msa0523970:CDS
CGATCCACAAAACGACCTGA+AGG 0.581470 3_4:-77429966 None:intergenic
GTTACCGTGATGTCGTGTGC+AGG 0.585031 3_4:+77429847 Msa0523970:CDS
AGTTGAAATGAACGGAAACA+AGG 0.585465 3_4:-77426370 None:intergenic
TTGCAAAGAATCTGGCCACA+TGG 0.589813 3_4:+77429482 Msa0523970:CDS
GTTGCGGTTTGCCACAATTG+TGG 0.589836 3_4:+77428468 Msa0523970:CDS
GCTGATTGTGTATGTTGTGG+TGG 0.590661 3_4:+77427913 Msa0523970:five_prime_UTR
GCCAGCAATTGTCCAAATGA+GGG 0.600151 3_4:+77429504 Msa0523970:CDS
CATTCTCTAGCATAATGACC+AGG 0.602340 3_4:-77428438 None:intergenic
GGAAGCTGCCTCTGCCTCTG+TGG 0.603886 3_4:-77429788 None:intergenic
CCTGTAAGGAGCATCGCGAT+AGG 0.607376 3_4:-77428073 None:intergenic
ATTATTGCAAGCCTTCTCGT+TGG 0.611683 3_4:-77429652 None:intergenic
TGGAGGTGGTTGCTGATCAG+TGG 0.614540 3_4:+77427933 Msa0523970:five_prime_UTR
TACAGGAGAGATTCAAGTCG+GGG 0.614848 3_4:+77428090 Msa0523970:CDS
TGCCATAATTGCTATAAGCA+GGG 0.615274 3_4:+77429609 Msa0523970:CDS
ACCCTGGAAGACCACAATTG+TGG 0.615547 3_4:-77428479 None:intergenic
CTTACAGGAGAGATTCAAGT+CGG 0.616392 3_4:+77428088 Msa0523970:CDS
AACTCCGACGAAGCTGTGGA+AGG 0.617586 3_4:+77426389 Msa0523970:five_prime_UTR
TAGAGAATGCCCTAATGTTG+CGG 0.618296 3_4:+77428452 Msa0523970:CDS
GTGGCTGATTGTGTATGTTG+TGG 0.621304 3_4:+77427910 Msa0523970:five_prime_UTR
ATGATTTGTCATAATTGTGG+AGG 0.621458 3_4:+77429918 Msa0523970:CDS
TGTTGAATGTACCAACGAGA+AGG 0.628565 3_4:+77429641 Msa0523970:CDS
GAAGTCACGACAAGGAGTCA+AGG 0.629578 3_4:+77430126 Msa0523970:three_prime_UTR
GAGCTGAGCACTCCCTAGCA+CGG 0.630825 3_4:-77429557 None:intergenic
CAATTATGACAAATCATCAA+GGG 0.632748 3_4:-77429912 None:intergenic
TAATCTAACGTGTTATCTAG+AGG 0.637342 3_4:-77426337 None:intergenic
AGTTCCTGCACACGACATCA+CGG 0.644450 3_4:-77429851 None:intergenic
TTCGTCGGAGTTGAAATGAA+CGG 0.646241 3_4:-77426378 None:intergenic
GCAATAATTGTAGGAAAACA+GGG 0.655669 3_4:+77429667 Msa0523970:CDS
TGGATCGCTACCCTAGTAGG+AGG 0.659785 3_4:+77429982 Msa0523970:CDS
GATCCACAAAACGACCTGAA+GGG 0.666668 3_4:-77429965 None:intergenic
GAGGGCATTTGCCACACCTG+TGG 0.667696 3_4:+77429522 Msa0523970:CDS
TTGGACAATTGCTGGCCATG+TGG 0.668284 3_4:-77429497 None:intergenic
AACCTGGTGAAGTCACGACA+AGG 0.675147 3_4:+77430118 Msa0523970:three_prime_UTR
TCTGTGGTCTCCAATAACGT+CGG 0.680319 3_4:-77429772 None:intergenic
CACAACCTTAGGTCCCCTGG+AGG 0.719764 3_4:-77429588 None:intergenic
TGGTACATTCAACAGCAATG+TGG 0.725759 3_4:-77429632 None:intergenic
CTGAGCACTCCCTAGCACGG+TGG 0.735482 3_4:-77429554 None:intergenic
GACGTTATTGGAGACCACAG+AGG 0.762303 3_4:+77429774 Msa0523970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACCAATTTCTTTAATTAAT+CGG + chr3_4:77426433-77426452 Msa0523970:intron 15.0%
!!! AACTGAGTTTAATTTATATA+GGG + chr3_4:77427309-77427328 Msa0523970:intron 15.0%
!!! TTTTGGTTTTTATATTTTGA+AGG + chr3_4:77427819-77427838 Msa0523970:intron 15.0%
!!! TTTGGTTTTTATATTTTGAA+GGG + chr3_4:77427820-77427839 Msa0523970:intron 15.0%
!! GACAAAAAAAAAACAAATTA+TGG - chr3_4:77428385-77428404 None:intergenic 15.0%
!! TGCTTAAGTAAATTATTTAT+CGG + chr3_4:77428557-77428576 Msa0523970:intron 15.0%
!! AAAAAAAAAAAATGAGCAAA+AGG - chr3_4:77428940-77428959 None:intergenic 15.0%
!! AACCGATTAATTAAAGAAAT+TGG - chr3_4:77426438-77426457 None:intergenic 20.0%
!! ATCAATGTTAATTACAGTTA+GGG + chr3_4:77426493-77426512 Msa0523970:intron 20.0%
!!! TTTAATTTTTTTTCCCTCTT+TGG - chr3_4:77426767-77426786 None:intergenic 20.0%
!!! AAACATTCTTTTTCTAGTTT+CGG - chr3_4:77427097-77427116 None:intergenic 20.0%
!!! CAACTGAGTTTAATTTATAT+AGG + chr3_4:77427308-77427327 Msa0523970:intron 20.0%
!! ATTTGTTTCCTTGATTAATT+AGG - chr3_4:77427405-77427424 None:intergenic 20.0%
!! AAGAAAAACTGAGAAATATA+TGG - chr3_4:77427478-77427497 None:intergenic 20.0%
!!! TTGGTTTTTATATTTTGAAG+GGG + chr3_4:77427821-77427840 Msa0523970:intron 20.0%
!! CATAAAAAGAGTAAATGAAT+GGG - chr3_4:77428267-77428286 None:intergenic 20.0%
!! TCATAAAAAGAGTAAATGAA+TGG - chr3_4:77428268-77428287 None:intergenic 20.0%
!! GCTTAAGTAAATTATTTATC+GGG + chr3_4:77428558-77428577 Msa0523970:intron 20.0%
!! CTTAAGTAAATTATTTATCG+GGG + chr3_4:77428559-77428578 Msa0523970:intron 20.0%
!! ATATCAACTTTAATTATGCA+AGG - chr3_4:77428628-77428647 None:intergenic 20.0%
!!! TGCATAATTAAAGTTGATAT+TGG + chr3_4:77428628-77428647 Msa0523970:intron 20.0%
!! AAATCTATGAAAGAAAATGT+AGG - chr3_4:77428698-77428717 None:intergenic 20.0%
!! AAATCTAAGAAAATCTATCT+AGG - chr3_4:77428722-77428741 None:intergenic 20.0%
!!! AGATAGATTTTCTTAGATTT+TGG + chr3_4:77428722-77428741 Msa0523970:intron 20.0%
!! AAAACCATATTATTTGAGAA+CGG - chr3_4:77428963-77428982 None:intergenic 20.0%
!! TGAAAATAAAACCATAATCT+AGG - chr3_4:77428995-77429014 None:intergenic 20.0%
!!! TTGTTTTTTTCCAATCTTTT+CGG - chr3_4:77429098-77429117 None:intergenic 20.0%
!! TTATTTATTGAAGTGAAACA+AGG - chr3_4:77429134-77429153 None:intergenic 20.0%
!! AAATCAAATGAAGATTGTAA+AGG - chr3_4:77429162-77429181 None:intergenic 20.0%
!!! ACAATCTTCATTTGATTTTA+TGG + chr3_4:77429164-77429183 Msa0523970:intron 20.0%
!!! TTTTCCTTTTATGTTTAATC+AGG + chr3_4:77429418-77429437 Msa0523970:intron 20.0%
!! TAGAAATTAAAAAGCTTAGA+AGG - chr3_4:77430243-77430262 None:intergenic 20.0%
!!! CTTTTTAATTTCTAGATACA+GGG + chr3_4:77430249-77430268 Msa0523970:three_prime_UTR 20.0%
! GATCAATGTTAATTACAGTT+AGG + chr3_4:77426492-77426511 Msa0523970:intron 25.0%
! AGTTAGGGTTATGTTTATTT+AGG + chr3_4:77426508-77426527 Msa0523970:intron 25.0%
!! CCTTCATATTTCTAATTCTA+GGG + chr3_4:77426551-77426570 Msa0523970:intron 25.0%
!! ATTGATGTCAGATTTTGAAT+CGG - chr3_4:77426631-77426650 None:intergenic 25.0%
! CATCAATTCTAGGTATATTA+AGG + chr3_4:77426644-77426663 Msa0523970:intron 25.0%
!!! GATTTTTAGCTATGTAGTTA+TGG + chr3_4:77426680-77426699 Msa0523970:intron 25.0%
! TGCAATTAATTTATCGCTAA+TGG - chr3_4:77426735-77426754 None:intergenic 25.0%
! AGCTCAAATATCATACTATT+CGG - chr3_4:77426795-77426814 None:intergenic 25.0%
! ACTAGAAAAAGAATGTTTGA+AGG + chr3_4:77427099-77427118 Msa0523970:intron 25.0%
! CTAGAAAAAGAATGTTTGAA+GGG + chr3_4:77427100-77427119 Msa0523970:intron 25.0%
! GCATATCATAACATGTAAAT+AGG - chr3_4:77427365-77427384 None:intergenic 25.0%
! TTAGGATCTTTGTAATCATT+AGG - chr3_4:77427387-77427406 None:intergenic 25.0%
! ACAAAGATCCTAATTAATCA+AGG + chr3_4:77427394-77427413 Msa0523970:intron 25.0%
! TGTCTTCAAATCAATTTCTA+CGG + chr3_4:77427529-77427548 Msa0523970:intron 25.0%
! AATTTCATGTTCTATACTGT+TGG + chr3_4:77427794-77427813 Msa0523970:intron 25.0%
! CACATATTCAAAATGTCAAA+TGG - chr3_4:77428342-77428361 None:intergenic 25.0%
! AATTCTTCAGAAGAAATGTA+AGG - chr3_4:77428768-77428787 None:intergenic 25.0%
! ACAAGATAACACAAATGAAT+TGG - chr3_4:77428845-77428864 None:intergenic 25.0%
!! TTTTCCGTTCTCAAATAATA+TGG + chr3_4:77428956-77428975 Msa0523970:intron 25.0%
! CTTTATAAACATGTCATTGA+AGG + chr3_4:77429039-77429058 Msa0523970:intron 25.0%
! CAATTATGACAAATCATCAA+GGG - chr3_4:77429915-77429934 None:intergenic 25.0%
! ACAATTATGACAAATCATCA+AGG - chr3_4:77429916-77429935 None:intergenic 25.0%
!! TTGATGATTTGTCATAATTG+TGG + chr3_4:77429915-77429934 Msa0523970:CDS 25.0%
!!! AGTTATATGGTGGTTTTTTA+TGG + chr3_4:77430033-77430052 Msa0523970:three_prime_UTR 25.0%
!! TTTTTATGGTTATCTTGTTG+AGG + chr3_4:77430047-77430066 Msa0523970:three_prime_UTR 25.0%
! TAAAGCGATAAAAAAGCTTA+TGG - chr3_4:77430173-77430192 None:intergenic 25.0%
!!! GCTTTTTAATTTCTAGATAC+AGG + chr3_4:77430248-77430267 Msa0523970:three_prime_UTR 25.0%
!! ATAATGTTGGTAAGCTTATA+TGG + chr3_4:77430305-77430324 Msa0523970:three_prime_UTR 25.0%
TAATCTAACGTGTTATCTAG+AGG - chr3_4:77426340-77426359 None:intergenic 30.0%
! GCCTTCATATTTCTAATTCT+AGG + chr3_4:77426550-77426569 Msa0523970:intron 30.0%
CCCTAGAATTAGAAATATGA+AGG - chr3_4:77426554-77426573 None:intergenic 30.0%
! TTGATGTCAGATTTTGAATC+GGG - chr3_4:77426630-77426649 None:intergenic 30.0%
CAAAATCTGACATCAATTCT+AGG + chr3_4:77426634-77426653 Msa0523970:intron 30.0%
ATATTAAGGTTGCTAAGTGA+CGG + chr3_4:77426658-77426677 Msa0523970:intron 30.0%
CGATAAATTAATTGCACGAT+AGG + chr3_4:77426739-77426758 Msa0523970:intron 30.0%
TGGTCAAGGAAAATGATAAA+CGG + chr3_4:77426864-77426883 Msa0523970:intron 30.0%
TAGAAGCAAATTTGATGTCA+AGG + chr3_4:77426972-77426991 Msa0523970:intron 30.0%
AACAAAGAAGTTTGTATTGC+CGG - chr3_4:77427063-77427082 None:intergenic 30.0%
TTGAACTATGTTAGACCATT+CGG - chr3_4:77427199-77427218 None:intergenic 30.0%
GTCTTCAAATCAATTTCTAC+GGG + chr3_4:77427530-77427549 Msa0523970:intron 30.0%
TATAACATGAACTCTAGGTA+TGG - chr3_4:77427649-77427668 None:intergenic 30.0%
ACCTAGAGTTCATGTTATAT+TGG + chr3_4:77427650-77427669 Msa0523970:intron 30.0%
CCTAGAGTTCATGTTATATT+GGG + chr3_4:77427651-77427670 Msa0523970:intron 30.0%
ATGTTATGAAGAATGTGACA+TGG + chr3_4:77427703-77427722 Msa0523970:intron 30.0%
! GTTCTATACTGTTGGAATTT+TGG + chr3_4:77427802-77427821 Msa0523970:intron 30.0%
!! GTTTTTATATTTTGAAGGGG+AGG + chr3_4:77427824-77427843 Msa0523970:intron 30.0%
ATTTGAGTAGGTAAAGAGAA+TGG - chr3_4:77428148-77428167 None:intergenic 30.0%
!! AAATGTACTGGTTAGGAATT+AGG + chr3_4:77428164-77428183 Msa0523970:intron 30.0%
CTCAGTTAAAAAAACAGAGA+CGG - chr3_4:77428513-77428532 None:intergenic 30.0%
TTTGTGCCAACTCTTTAATT+TGG + chr3_4:77428601-77428620 Msa0523970:intron 30.0%
! AGTTTTTAACAGATTCATCG+TGG + chr3_4:77428652-77428671 Msa0523970:intron 30.0%
AATGTAGGTAAAGTTCACAA+GGG - chr3_4:77428683-77428702 None:intergenic 30.0%
AAATGTAGGTAAAGTTCACA+AGG - chr3_4:77428684-77428703 None:intergenic 30.0%
TAGGTTTCTTGCTTCTTAAT+TGG + chr3_4:77428877-77428896 Msa0523970:intron 30.0%
TTTCTTGCTTCTTAATTGGA+CGG + chr3_4:77428881-77428900 Msa0523970:intron 30.0%
!! TTGCTTTTGTTCCTAGATTA+TGG + chr3_4:77428981-77429000 Msa0523970:intron 30.0%
!! ATTTGATTTTATGGACGAGA+AGG + chr3_4:77429173-77429192 Msa0523970:intron 30.0%
CATCAGAATCAATAGGAAAA+CGG - chr3_4:77429199-77429218 None:intergenic 30.0%
TATTTGCCATCAGAATCAAT+AGG - chr3_4:77429206-77429225 None:intergenic 30.0%
!! TGTTACATTTTAGTCAAACG+AGG - chr3_4:77429235-77429254 None:intergenic 30.0%
GAGAAAATGACAACATAAAG+AGG - chr3_4:77429295-77429314 None:intergenic 30.0%
TGTGCCTGATTAAACATAAA+AGG - chr3_4:77429425-77429444 None:intergenic 30.0%
TGCAATAATTGTAGGAAAAC+AGG + chr3_4:77429666-77429685 Msa0523970:CDS 30.0%
GCAATAATTGTAGGAAAACA+GGG + chr3_4:77429667-77429686 Msa0523970:CDS 30.0%
! ATGATTTGTCATAATTGTGG+AGG + chr3_4:77429918-77429937 Msa0523970:CDS 30.0%
!! ACACTTTTTGAACTTGTAAG+TGG + chr3_4:77430192-77430211 Msa0523970:three_prime_UTR 30.0%
!!! GGCACCTTTTTTTAATGATT+GGG + chr3_4:77430270-77430289 Msa0523970:three_prime_UTR 30.0%
!!! GCACCTTTTTTTAATGATTG+GGG + chr3_4:77430271-77430290 Msa0523970:three_prime_UTR 30.0%
CATCCCCAATCATTAAAAAA+AGG - chr3_4:77430277-77430296 None:intergenic 30.0%
!!! CTTTTTTTAATGATTGGGGA+TGG + chr3_4:77430275-77430294 Msa0523970:three_prime_UTR 30.0%
AGTTGAAATGAACGGAAACA+AGG - chr3_4:77426373-77426392 None:intergenic 35.0%
TTTGAATTGTCTCTGTGCTT+GGG + chr3_4:77426592-77426611 Msa0523970:intron 35.0%
! TCGCTAATGGATCATATTAG+TGG - chr3_4:77426722-77426741 None:intergenic 35.0%
AGGAAAATGATAAACGGCAA+AGG + chr3_4:77426870-77426889 Msa0523970:intron 35.0%
AATGAACATTGACAGTGCTT+GGG + chr3_4:77426943-77426962 Msa0523970:intron 35.0%
AATACTGCTTAACCTGATGA+TGG + chr3_4:77427025-77427044 Msa0523970:intron 35.0%
!!! TTTTCTAGTTTCGGATCACA+TGG - chr3_4:77427088-77427107 None:intergenic 35.0%
GAATGGTCTAACATAGTTCA+AGG + chr3_4:77427198-77427217 Msa0523970:intron 35.0%
GGAAACAAATCAGATCATCT+AGG + chr3_4:77427415-77427434 Msa0523970:intron 35.0%
!! GGTTAGCTTGATTGATCAAA+AGG + chr3_4:77427596-77427615 Msa0523970:intron 35.0%
TAGCTTGATTGATCAAAAGG+TGG + chr3_4:77427599-77427618 Msa0523970:intron 35.0%
CTCTAGGTATGGAAAAACAT+TGG - chr3_4:77427638-77427657 None:intergenic 35.0%
CCCAATATAACATGAACTCT+AGG - chr3_4:77427654-77427673 None:intergenic 35.0%
!!! GAGACTTGCTATCAAGTTTT+GGG + chr3_4:77427725-77427744 Msa0523970:intron 35.0%
!! TTTATATTTTGAAGGGGAGG+CGG + chr3_4:77427827-77427846 Msa0523970:intron 35.0%
!! GATTGGTTTAAGGATGATCT+TGG + chr3_4:77427857-77427876 Msa0523970:intron 35.0%
TTTAAGGATGATCTTGGATG+TGG + chr3_4:77427863-77427882 Msa0523970:intron 35.0%
CTTTACCTACTCAAATGTAC+TGG + chr3_4:77428152-77428171 Msa0523970:intron 35.0%
!! AGAGTAAATGAATGGGCTAA+AGG - chr3_4:77428260-77428279 None:intergenic 35.0%
AGTTCTTGCACAAATTGTCT+CGG - chr3_4:77428410-77428429 None:intergenic 35.0%
ATTTGTGCAAGAACTGTAAG+AGG + chr3_4:77428415-77428434 Msa0523970:CDS 35.0%
TAAATTATTTATCGGGGCGA+GGG + chr3_4:77428565-77428584 Msa0523970:intron 35.0%
CAAGGACCAAATTAAAGAGT+TGG - chr3_4:77428610-77428629 None:intergenic 35.0%
! TGAATTGGAAGTACATCCTA+AGG - chr3_4:77428830-77428849 None:intergenic 35.0%
TTTGTGTTATCTTGTACCGT+TGG + chr3_4:77428850-77428869 Msa0523970:intron 35.0%
!!! CGTTTTCCTATTGATTCTGA+TGG + chr3_4:77429197-77429216 Msa0523970:intron 35.0%
TGCCATAATTGCTATAAGCA+GGG + chr3_4:77429609-77429628 Msa0523970:CDS 35.0%
AGAAGGCTTGCAATAATTGT+AGG + chr3_4:77429658-77429677 Msa0523970:CDS 35.0%
ACATTGCAAATTGGGTCATT+TGG - chr3_4:77429711-77429730 None:intergenic 35.0%
CATTGCACACATTGCAAATT+GGG - chr3_4:77429719-77429738 None:intergenic 35.0%
ACATTGCACACATTGCAAAT+TGG - chr3_4:77429720-77429739 None:intergenic 35.0%
! AGTTGTGGGTTACAGTTATA+TGG + chr3_4:77430020-77430039 Msa0523970:three_prime_UTR 35.0%
!! TGAGGACTGATTTTGAATCT+TGG + chr3_4:77430065-77430084 Msa0523970:three_prime_UTR 35.0%
AAAGCTTATGGCCAATACAT+TGG - chr3_4:77430161-77430180 None:intergenic 35.0%
!!! GGGCACCTTTTTTTAATGAT+TGG + chr3_4:77430269-77430288 Msa0523970:three_prime_UTR 35.0%
! GGATGGATTTGACATAATGT+TGG + chr3_4:77430292-77430311 Msa0523970:three_prime_UTR 35.0%
TTCGTCGGAGTTGAAATGAA+CGG - chr3_4:77426381-77426400 None:intergenic 40.0%
TTCTCATGCGACTCTCTATT+TGG + chr3_4:77426470-77426489 Msa0523970:intron 40.0%
CAGAGACAATTCAAACGTGT+AGG - chr3_4:77426587-77426606 None:intergenic 40.0%
GTTTGAATTGTCTCTGTGCT+TGG + chr3_4:77426591-77426610 Msa0523970:intron 40.0%
CGAGGTTGTTAGGATCTATT+GGG - chr3_4:77426838-77426857 None:intergenic 40.0%
ACGAGGTTGTTAGGATCTAT+TGG - chr3_4:77426839-77426858 None:intergenic 40.0%
AGATCCTAACAACCTCGTTA+CGG + chr3_4:77426841-77426860 Msa0523970:intron 40.0%
AATGATAAACGGCAAAGGTC+AGG + chr3_4:77426875-77426894 Msa0523970:intron 40.0%
GAATGAACATTGACAGTGCT+TGG + chr3_4:77426942-77426961 Msa0523970:intron 40.0%
TTACCAAGCTCTCAAATGTG+TGG - chr3_4:77427176-77427195 None:intergenic 40.0%
TGGTCTAACATAGTTCAAGG+AGG + chr3_4:77427201-77427220 Msa0523970:intron 40.0%
TCTAACATAGTTCAAGGAGG+AGG + chr3_4:77427204-77427223 Msa0523970:intron 40.0%
AGGACTGTATGCTATGCATA+AGG - chr3_4:77427573-77427592 None:intergenic 40.0%
GATCAATCAAGCTAACCAGA+AGG - chr3_4:77427593-77427612 None:intergenic 40.0%
!!! GGAGACTTGCTATCAAGTTT+TGG + chr3_4:77427724-77427743 Msa0523970:intron 40.0%
TGACATGATTGATGCGAGAT+GGG + chr3_4:77427760-77427779 Msa0523970:intron 40.0%
!! TTATATTTTGAAGGGGAGGC+GGG + chr3_4:77427828-77427847 Msa0523970:intron 40.0%
CTTACAGGAGAGATTCAAGT+CGG + chr3_4:77428088-77428107 Msa0523970:CDS 40.0%
TTACAGGAGAGATTCAAGTC+GGG + chr3_4:77428089-77428108 Msa0523970:CDS 40.0%
CCTAACCAGTACATTTGAGT+AGG - chr3_4:77428160-77428179 None:intergenic 40.0%
!! CCTACTCAAATGTACTGGTT+AGG + chr3_4:77428157-77428176 Msa0523970:intron 40.0%
!! GTACTGGTTAGGAATTAGGA+TGG + chr3_4:77428168-77428187 Msa0523970:intron 40.0%
AAAGAACTTATCAGAGCAGC+AGG - chr3_4:77428311-77428330 None:intergenic 40.0%
TATGTGTGCATTTCTCACAG+CGG + chr3_4:77428356-77428375 Msa0523970:intron 40.0%
CATTCTCTAGCATAATGACC+AGG - chr3_4:77428441-77428460 None:intergenic 40.0%
TAGAGAATGCCCTAATGTTG+CGG + chr3_4:77428452-77428471 Msa0523970:CDS 40.0%
GTAAATTATTTATCGGGGCG+AGG + chr3_4:77428564-77428583 Msa0523970:intron 40.0%
AGGTAAAGTTCACAAGGGAA+TGG - chr3_4:77428678-77428697 None:intergenic 40.0%
TACATCCTAAGGTGACATCA+TGG - chr3_4:77428819-77428838 None:intergenic 40.0%
!! ATTGGACGGTGGTTGATTTT+AGG + chr3_4:77428895-77428914 Msa0523970:intron 40.0%
ACTCATCTGATGTCTCTTGA+AGG - chr3_4:77429072-77429091 None:intergenic 40.0%
GATGAGTTGTCCGAAAAGAT+TGG + chr3_4:77429085-77429104 Msa0523970:intron 40.0%
! ATATTTGCTGACAAGTGTCG+TGG + chr3_4:77429357-77429376 Msa0523970:intron 40.0%
TTCTTTGCAATTCCAGCACA+CGG - chr3_4:77429472-77429491 None:intergenic 40.0%
TGCTGGAATTGCAAAGAATC+TGG + chr3_4:77429474-77429493 Msa0523970:CDS 40.0%
AGCAATTATGGCACAACCTT+AGG - chr3_4:77429602-77429621 None:intergenic 40.0%
GTGCCATAATTGCTATAAGC+AGG + chr3_4:77429608-77429627 Msa0523970:CDS 40.0%
TGGTACATTCAACAGCAATG+TGG - chr3_4:77429635-77429654 None:intergenic 40.0%
TGTTGAATGTACCAACGAGA+AGG + chr3_4:77429641-77429660 Msa0523970:CDS 40.0%
ATTATTGCAAGCCTTCTCGT+TGG - chr3_4:77429655-77429674 None:intergenic 40.0%
TGCAATGTGTGCAATGTTTC+TGG + chr3_4:77429723-77429742 Msa0523970:CDS 40.0%
TGTCCAAAATCCGACGTTAT+TGG + chr3_4:77429762-77429781 Msa0523970:CDS 40.0%
! TCTCCAATAACGTCGGATTT+TGG - chr3_4:77429768-77429787 None:intergenic 40.0%
AGCAATTTGGTCACATGAGT+CGG + chr3_4:77429877-77429896 Msa0523970:CDS 40.0%
! TACTAATGGGTGACAAGTTG+TGG + chr3_4:77430005-77430024 Msa0523970:exon 40.0%
! ACTAATGGGTGACAAGTTGT+GGG + chr3_4:77430006-77430025 Msa0523970:exon 40.0%
! TGTGGGTTACAGTTATATGG+TGG + chr3_4:77430023-77430042 Msa0523970:three_prime_UTR 40.0%
! GCTTTATTGCTCTTTGAACC+TGG + chr3_4:77430102-77430121 Msa0523970:three_prime_UTR 40.0%
! GGATGATGATGCCAATGTAT+TGG + chr3_4:77430147-77430166 Msa0523970:three_prime_UTR 40.0%
AAGCTGTGGAAGGCGAAATA+AGG + chr3_4:77426399-77426418 Msa0523970:five_prime_UTR 45.0%
CATCATTCAACGCCATGAGA+CGG + chr3_4:77426998-77427017 Msa0523970:intron 45.0%
TCATGGCAAGAACCATCATC+AGG - chr3_4:77427040-77427059 None:intergenic 45.0%
ATGATGGTTCTTGCCATGAC+CGG + chr3_4:77427041-77427060 Msa0523970:intron 45.0%
GAAGTTTGTATTGCCGGTCA+TGG - chr3_4:77427057-77427076 None:intergenic 45.0%
! TGAGTTGTTGTTCGAACGCT+AGG - chr3_4:77427126-77427145 None:intergenic 45.0%
CTCTCAAATGTGTGGCTTGA+TGG - chr3_4:77427168-77427187 None:intergenic 45.0%
AAGCCACACATTTGAGAGCT+TGG + chr3_4:77427170-77427189 Msa0523970:intron 45.0%
! TTGAGAGCTTGGTAACCGAA+TGG + chr3_4:77427181-77427200 Msa0523970:intron 45.0%
TGCATAGCATACAGTCCTTC+TGG + chr3_4:77427575-77427594 Msa0523970:intron 45.0%
!!! CAAGTTTTGGGTCCTGAGAA+CGG + chr3_4:77427737-77427756 Msa0523970:intron 45.0%
TCAATCATGTCACCGTTCTC+AGG - chr3_4:77427752-77427771 None:intergenic 45.0%
GTGACATGATTGATGCGAGA+TGG + chr3_4:77427759-77427778 Msa0523970:intron 45.0%
!! TATATTTTGAAGGGGAGGCG+GGG + chr3_4:77427829-77427848 Msa0523970:intron 45.0%
TCTTGGATGTGGTTGTGATG+TGG + chr3_4:77427874-77427893 Msa0523970:intron 45.0%
GTGGCTGATTGTGTATGTTG+TGG + chr3_4:77427910-77427929 Msa0523970:five_prime_UTR 45.0%
GCTGATTGTGTATGTTGTGG+TGG + chr3_4:77427913-77427932 Msa0523970:five_prime_UTR 45.0%
GATTGTGTATGTTGTGGTGG+AGG + chr3_4:77427916-77427935 Msa0523970:five_prime_UTR 45.0%
AGCGAATCTTACGGATTCCA+GGG - chr3_4:77428041-77428060 None:intergenic 45.0%
GTCGATCAGAGCGAATCTTA+CGG - chr3_4:77428050-77428069 None:intergenic 45.0%
CGACTTGAATCTCTCCTGTA+AGG - chr3_4:77428090-77428109 None:intergenic 45.0%
TACAGGAGAGATTCAAGTCG+GGG + chr3_4:77428090-77428109 Msa0523970:CDS 45.0%
TGGTTAGGAATTAGGATGGC+TGG + chr3_4:77428172-77428191 Msa0523970:intron 45.0%
AAACAGTGCTGTGCTAGAAG+AGG + chr3_4:77428204-77428223 Msa0523970:intron 45.0%
TGTGGCAAACCGCAACATTA+GGG - chr3_4:77428464-77428483 None:intergenic 45.0%
TTGTGGCAAACCGCAACATT+AGG - chr3_4:77428465-77428484 None:intergenic 45.0%
AATTGTGGTCTTCCAGGGTA+TGG + chr3_4:77428483-77428502 Msa0523970:intron 45.0%
!! GATTTTGGTACCAGTCAGCA+TGG + chr3_4:77428737-77428756 Msa0523970:intron 45.0%
TAAGGTATGTCCATGCTGAC+TGG - chr3_4:77428750-77428769 None:intergenic 45.0%
ACATCATGGACATGCAAGCA+AGG - chr3_4:77428805-77428824 None:intergenic 45.0%
CATGTCCATGATGTCACCTT+AGG + chr3_4:77428811-77428830 Msa0523970:intron 45.0%
! ATCTTGTACCGTTGGTGCTT+AGG + chr3_4:77428858-77428877 Msa0523970:intron 45.0%
GCAAGAAACCTAAGCACCAA+CGG - chr3_4:77428869-77428888 None:intergenic 45.0%
CTTGCTTCTTAATTGGACGG+TGG + chr3_4:77428884-77428903 Msa0523970:intron 45.0%
TTGCAAAGAATCTGGCCACA+TGG + chr3_4:77429482-77429501 Msa0523970:CDS 45.0%
GCCAGCAATTGTCCAAATGA+GGG + chr3_4:77429504-77429523 Msa0523970:CDS 45.0%
GGCCCTGCTTATAGCAATTA+TGG - chr3_4:77429614-77429633 None:intergenic 45.0%
! TTGTAGGAAAACAGGGCACT+TGG + chr3_4:77429674-77429693 Msa0523970:CDS 45.0%
!! GTGCAATGTTTCTGGACACT+TGG + chr3_4:77429731-77429750 Msa0523970:CDS 45.0%
TCTGTGGTCTCCAATAACGT+CGG - chr3_4:77429775-77429794 None:intergenic 45.0%
GACTCATGTGACCAAATTGC+TGG - chr3_4:77429878-77429897 None:intergenic 45.0%
GCAATTTGGTCACATGAGTC+GGG + chr3_4:77429878-77429897 Msa0523970:CDS 45.0%
TGTCATAATTGTGGAGGTCG+TGG + chr3_4:77429924-77429943 Msa0523970:CDS 45.0%
GATCCACAAAACGACCTGAA+GGG - chr3_4:77429968-77429987 None:intergenic 45.0%
!! ACCCTAGTAGGAGGTACTAA+TGG + chr3_4:77429991-77430010 Msa0523970:CDS 45.0%
CCCATTAGTACCTCCTACTA+GGG - chr3_4:77429995-77430014 None:intergenic 45.0%
!! CCCTAGTAGGAGGTACTAAT+GGG + chr3_4:77429992-77430011 Msa0523970:exon 45.0%
ACCCATTAGTACCTCCTACT+AGG - chr3_4:77429996-77430015 None:intergenic 45.0%
TTTCAACTCCGACGAAGCTG+TGG + chr3_4:77426385-77426404 Msa0523970:five_prime_UTR 50.0%
TTGCACGATAGGCACCAAAG+AGG + chr3_4:77426750-77426769 Msa0523970:intron 50.0%
TGCACGATAGGCACCAAAGA+GGG + chr3_4:77426751-77426770 Msa0523970:intron 50.0%
TCCTAACAACCTCGTTACGG+TGG + chr3_4:77426844-77426863 Msa0523970:intron 50.0%
ACCACCGTAACGAGGTTGTT+AGG - chr3_4:77426848-77426867 None:intergenic 50.0%
TTTCCTTGACCACCGTAACG+AGG - chr3_4:77426856-77426875 None:intergenic 50.0%
GCAGTATTGTCTCCGTCTCA+TGG - chr3_4:77427013-77427032 None:intergenic 50.0%
!! ATATTTTGAAGGGGAGGCGG+GGG + chr3_4:77427830-77427849 Msa0523970:intron 50.0%
!! CGGGGGTTTGGATTGGTTTA+AGG + chr3_4:77427847-77427866 Msa0523970:intron 50.0%
GATGTGGTTGTGATGTGGAC+AGG + chr3_4:77427879-77427898 Msa0523970:intron 50.0%
! TGTGTATGTTGTGGTGGAGG+TGG + chr3_4:77427919-77427938 Msa0523970:five_prime_UTR 50.0%
GAGCGAATCTTACGGATTCC+AGG - chr3_4:77428042-77428061 None:intergenic 50.0%
GAGATTCAAGTCGGGGTTTC+AGG + chr3_4:77428097-77428116 Msa0523970:CDS 50.0%
TGCAAGAACTGTAAGAGGCC+TGG + chr3_4:77428420-77428439 Msa0523970:CDS 50.0%
GTTGCGGTTTGCCACAATTG+TGG + chr3_4:77428468-77428487 Msa0523970:CDS 50.0%
TGCCACAATTGTGGTCTTCC+AGG + chr3_4:77428477-77428496 Msa0523970:CDS 50.0%
GCCACAATTGTGGTCTTCCA+GGG + chr3_4:77428478-77428497 Msa0523970:CDS 50.0%
ACCCTGGAAGACCACAATTG+TGG - chr3_4:77428482-77428501 None:intergenic 50.0%
AGAGACGGAATTCCATACCC+TGG - chr3_4:77428498-77428517 None:intergenic 50.0%
ATTCCAGCACACGGATTTCG+TGG - chr3_4:77429463-77429482 None:intergenic 50.0%
TTGGACAATTGCTGGCCATG+TGG - chr3_4:77429500-77429519 None:intergenic 50.0%
GGCCAGCAATTGTCCAAATG+AGG + chr3_4:77429503-77429522 Msa0523970:CDS 50.0%
GCCCTCATTTGGACAATTGC+TGG - chr3_4:77429508-77429527 None:intergenic 50.0%
GTGTGGCAAATGCCCTCATT+TGG - chr3_4:77429519-77429538 None:intergenic 50.0%
TGCCACACCTGTGGTAAAAC+TGG + chr3_4:77429531-77429550 Msa0523970:CDS 50.0%
TAAAACTGGCCACCGTGCTA+GGG + chr3_4:77429545-77429564 Msa0523970:CDS 50.0%
GACGTTATTGGAGACCACAG+AGG + chr3_4:77429774-77429793 Msa0523970:CDS 50.0%
AGTTCCTGCACACGACATCA+CGG - chr3_4:77429854-77429873 None:intergenic 50.0%
TGCAGGAACTGCCAGCAATT+TGG + chr3_4:77429864-77429883 Msa0523970:CDS 50.0%
TTGGCATATGAGTGCCCTTC+AGG + chr3_4:77429951-77429970 Msa0523970:CDS 50.0%
CGATCCACAAAACGACCTGA+AGG - chr3_4:77429969-77429988 None:intergenic 50.0%
TTGTGGATCGCTACCCTAGT+AGG + chr3_4:77429979-77429998 Msa0523970:CDS 50.0%
AACCTGGTGAAGTCACGACA+AGG + chr3_4:77430118-77430137 Msa0523970:three_prime_UTR 50.0%
GAAGTCACGACAAGGAGTCA+AGG + chr3_4:77430126-77430145 Msa0523970:three_prime_UTR 50.0%
AACTCCGACGAAGCTGTGGA+AGG + chr3_4:77426389-77426408 Msa0523970:five_prime_UTR 55.0%
TTCGCCTTCCACAGCTTCGT+CGG - chr3_4:77426396-77426415 None:intergenic 55.0%
CAACCTCGTTACGGTGGTCA+AGG + chr3_4:77426850-77426869 Msa0523970:intron 55.0%
GGTCAGGACACACTTGTACG+TGG + chr3_4:77426891-77426910 Msa0523970:intron 55.0%
GTGGTTGTGATGTGGACAGG+AGG + chr3_4:77427882-77427901 Msa0523970:intron 55.0%
GTTGTGATGTGGACAGGAGG+AGG + chr3_4:77427885-77427904 Msa0523970:intron 55.0%
TGGAGGTGGTTGCTGATCAG+TGG + chr3_4:77427933-77427952 Msa0523970:five_prime_UTR 55.0%
TTCTGCTCCTGCTCCTGCTT+CGG - chr3_4:77428011-77428030 None:intergenic 55.0%
!! CCTGTAAGGAGCATCGCGAT+AGG - chr3_4:77428076-77428095 None:intergenic 55.0%
CCTATCGCGATGCTCCTTAC+AGG + chr3_4:77428073-77428092 Msa0523970:CDS 55.0%
! GGCCAGTTTTACCACAGGTG+TGG - chr3_4:77429536-77429555 None:intergenic 55.0%
! ACGGTGGCCAGTTTTACCAC+AGG - chr3_4:77429541-77429560 None:intergenic 55.0%
GTAAAACTGGCCACCGTGCT+AGG + chr3_4:77429544-77429563 Msa0523970:CDS 55.0%
ATTGGAGACCACAGAGGCAG+AGG + chr3_4:77429780-77429799 Msa0523970:CDS 55.0%
GTTACCGTGATGTCGTGTGC+AGG + chr3_4:77429847-77429866 Msa0523970:CDS 55.0%
TCACATGAGTCGGGACTGCA+TGG + chr3_4:77429887-77429906 Msa0523970:CDS 55.0%
CACATGAGTCGGGACTGCAT+GGG + chr3_4:77429888-77429907 Msa0523970:CDS 55.0%
ACATGAGTCGGGACTGCATG+GGG + chr3_4:77429889-77429908 Msa0523970:CDS 55.0%
TTGTGGAGGTCGTGGTCACT+TGG + chr3_4:77429932-77429951 Msa0523970:CDS 55.0%
!! GTGCCCTTCAGGTCGTTTTG+TGG + chr3_4:77429962-77429981 Msa0523970:CDS 55.0%
TGGATCGCTACCCTAGTAGG+AGG + chr3_4:77429982-77430001 Msa0523970:CDS 55.0%
CTCCTTGTCGTGACTTCACC+AGG - chr3_4:77430123-77430142 None:intergenic 55.0%
ATGTGGACAGGAGGAGGCAG+TGG + chr3_4:77427891-77427910 Msa0523970:intron 60.0%
TGAGTTCAGACAGCCGCAGC+CGG + chr3_4:77427983-77428002 Msa0523970:CDS 60.0%
AGGAGCAGAAGTCGTAGCCC+TGG + chr3_4:77428021-77428040 Msa0523970:CDS 60.0%
GCTCCACGAAATCCGTGTGC+TGG + chr3_4:77429457-77429476 Msa0523970:CDS 60.0%
!! GAGGGCATTTGCCACACCTG+TGG + chr3_4:77429522-77429541 Msa0523970:CDS 60.0%
GAGCTGAGCACTCCCTAGCA+CGG - chr3_4:77429560-77429579 None:intergenic 60.0%
TCAGCTCCATCACTGCCTCC+AGG + chr3_4:77429573-77429592 Msa0523970:CDS 60.0%
CAGCTCCATCACTGCCTCCA+GGG + chr3_4:77429574-77429593 Msa0523970:CDS 60.0%
AGCTCCATCACTGCCTCCAG+GGG + chr3_4:77429575-77429594 Msa0523970:CDS 60.0%
CACAACCTTAGGTCCCCTGG+AGG - chr3_4:77429591-77429610 None:intergenic 60.0%
TGGCACAACCTTAGGTCCCC+TGG - chr3_4:77429594-77429613 None:intergenic 60.0%
TTGAAGGGGAGGCGGGGGTT+TGG + chr3_4:77427835-77427854 Msa0523970:intron 65.0%
TCCTGCTCCTGCTTCGGCTC+CGG - chr3_4:77428005-77428024 None:intergenic 65.0%
TCGGGGCGAGGGATGCAAGT+TGG + chr3_4:77428576-77428595 Msa0523970:intron 65.0%
CTGAGCACTCCCTAGCACGG+TGG - chr3_4:77429557-77429576 None:intergenic 65.0%
AGGTCCCCTGGAGGCAGTGA+TGG - chr3_4:77429582-77429601 None:intergenic 65.0%
CACTGCCTCCAGGGGACCTA+AGG + chr3_4:77429583-77429602 Msa0523970:CDS 65.0%
GGAAGCTGCCTCTGCCTCTG+TGG - chr3_4:77429791-77429810 None:intergenic 65.0%
AGAGGCAGAGGCAGCTTCCG+TGG + chr3_4:77429792-77429811 Msa0523970:CDS 65.0%
AGAGGCAGCTTCCGTGGTGC+TGG + chr3_4:77429798-77429817 Msa0523970:CDS 65.0%
!! AGCTTCCGTGGTGCTGGTGG+TGG + chr3_4:77429804-77429823 Msa0523970:CDS 65.0%
!! TTCCGTGGTGCTGGTGGTGG+TGG + chr3_4:77429807-77429826 Msa0523970:CDS 65.0%
CACCACCACCACCAGCACCA+CGG - chr3_4:77429812-77429831 None:intergenic 65.0%
!! GGTGGTGGTGGTGTTGCTGC+TGG + chr3_4:77429819-77429838 Msa0523970:CDS 65.0%
!! GGTGGTGGTGTTGCTGCTGG+TGG + chr3_4:77429822-77429841 Msa0523970:CDS 65.0%
!! GGTGGTGTTGCTGCTGGTGG+TGG + chr3_4:77429825-77429844 Msa0523970:CDS 65.0%
GGGGAGGCGGGGGTTTGGAT+TGG + chr3_4:77427840-77427859 Msa0523970:intron 70.0%
TCCTGCTTCGGCTCCGGCTG+CGG - chr3_4:77427999-77428018 None:intergenic 70.0%
! GGCAGCTTCCGTGGTGCTGG+TGG + chr3_4:77429801-77429820 Msa0523970:CDS 70.0%
GCCGGAGCCGAAGCAGGAGC+AGG + chr3_4:77428001-77428020 Msa0523970:CDS 75.0%
! GCCGCAGCCGGAGCCGAAGC+AGG + chr3_4:77427995-77428014 Msa0523970:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 77426285 77430353 77426285 ID=Msa0523970;Name=Msa0523970
chr3_4 mRNA 77426285 77430353 77426285 ID=Msa0523970-mRNA-1;Parent=Msa0523970;Name=Msa0523970-mRNA-1;_AED=0.38;_eAED=0.38;_QI=217|1|1|1|0.66|0.5|4|343|266
chr3_4 exon 77426285 77426420 77426285 ID=Msa0523970-mRNA-1:exon:22702;Parent=Msa0523970-mRNA-1
chr3_4 exon 77427901 77428118 77427901 ID=Msa0523970-mRNA-1:exon:22703;Parent=Msa0523970-mRNA-1
chr3_4 exon 77428407 77428499 77428407 ID=Msa0523970-mRNA-1:exon:22704;Parent=Msa0523970-mRNA-1
chr3_4 exon 77429440 77430353 77429440 ID=Msa0523970-mRNA-1:exon:22705;Parent=Msa0523970-mRNA-1
chr3_4 five_prime_UTR 77426285 77426420 77426285 ID=Msa0523970-mRNA-1:five_prime_utr;Parent=Msa0523970-mRNA-1
chr3_4 five_prime_UTR 77427901 77427981 77427901 ID=Msa0523970-mRNA-1:five_prime_utr;Parent=Msa0523970-mRNA-1
chr3_4 CDS 77427982 77428118 77427982 ID=Msa0523970-mRNA-1:cds;Parent=Msa0523970-mRNA-1
chr3_4 CDS 77428407 77428499 77428407 ID=Msa0523970-mRNA-1:cds;Parent=Msa0523970-mRNA-1
chr3_4 CDS 77429440 77430010 77429440 ID=Msa0523970-mRNA-1:cds;Parent=Msa0523970-mRNA-1
chr3_4 three_prime_UTR 77430011 77430353 77430011 ID=Msa0523970-mRNA-1:three_prime_utr;Parent=Msa0523970-mRNA-1
Gene Sequence

>Msa0523970

ATGAGTTCAGACAGCCGCAGCCGGAGCCGAAGCAGGAGCAGGAGCAGAAGTCGTAGCCCTGGAATCCGTAAGATTCGCTCTGATCGACATTCCTATCGCGATGCTCCTTACAGGAGAGATTCAAGTCGGGGTTTCAGCCGAGACAATTTGTGCAAGAACTGTAAGAGGCCTGGTCATTATGCTAGAGAATGCCCTAATGTTGCGGTTTGCCACAATTGTGGTCTTCCAGGGCACATTGCTTCTGAATGCTCCACGAAATCCGTGTGCTGGAATTGCAAAGAATCTGGCCACATGGCCAGCAATTGTCCAAATGAGGGCATTTGCCACACCTGTGGTAAAACTGGCCACCGTGCTAGGGAGTGCTCAGCTCCATCACTGCCTCCAGGGGACCTAAGGTTGTGCCATAATTGCTATAAGCAGGGCCACATTGCTGTTGAATGTACCAACGAGAAGGCTTGCAATAATTGTAGGAAAACAGGGCACTTGGCACGTGATTGTCCAAATGACCCAATTTGCAATGTGTGCAATGTTTCTGGACACTTGGCTAGACAATGTCCAAAATCCGACGTTATTGGAGACCACAGAGGCAGAGGCAGCTTCCGTGGTGCTGGTGGTGGTGGTGTTGCTGCTGGTGGTGGTTACCGTGATGTCGTGTGCAGGAACTGCCAGCAATTTGGTCACATGAGTCGGGACTGCATGGGGCCCTTGATGATTTGTCATAATTGTGGAGGTCGTGGTCACTTGGCATATGAGTGCCCTTCAGGTCGTTTTGTGGATCGCTACCCTAGTAGGAGGTACTAA
Protein sequence

>Msa0523970

MSSDSRSRSRSRSRSRSRSPGIRKIRSDRHSYRDAPYRRDSSRGFSRDNLCKNCKRPGHYARECPNVAVCHNCGLPGHIASECSTKSVCWNCKESGHMASNCPNEGICHTCGKTGHRARECSAPSLPPGDLRLCHNCYKQGHIAVECTNEKACNNCRKTGHLARDCPNDPICNVCNVSGHLARQCPKSDVIGDHRGRGSFRGAGGGGVAAGGGYRDVVCRNCQQFGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFVDRYPSRRY*