Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396600 | RHN65795.1 | 79.545 | 396 | 78 | 1 | 1 | 393 | 46 | 441 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396600 | sp|Q9S7T8|SPZX_ARATH | 52.577 | 388 | 177 | 3 | 11 | 391 | 3 | 390 | 5.51e-141 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396600 | A0A396IPH6 | 79.545 | 396 | 78 | 1 | 1 | 393 | 46 | 441 | 0.0 | 622 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa0396600 | 0.803814 | 2.912721e-49 | -8.615850e-47 |
| Msa0016570 | Msa0396600 | 0.803859 | 2.851027e-49 | -8.615850e-47 |
| Msa0200000 | Msa0396600 | 0.818485 | 1.912717e-52 | -8.615850e-47 |
| Msa0396600 | Msa0406120 | 0.822203 | 2.685792e-53 | -8.615850e-47 |
| Msa0396600 | Msa0444180 | 0.827570 | 1.454680e-54 | -8.615850e-47 |
| Msa0396600 | Msa0452900 | 0.818814 | 1.610812e-52 | -8.615850e-47 |
| Msa0396600 | Msa0454910 | 0.838998 | 2.061187e-57 | -8.615850e-47 |
| Msa0396600 | Msa0491590 | 0.837582 | 4.775343e-57 | -8.615850e-47 |
| Msa0396600 | Msa0502760 | 0.810443 | 1.150069e-50 | -8.615850e-47 |
| Msa0396600 | Msa0678930 | 0.809995 | 1.436542e-50 | -8.615850e-47 |
| Msa0396600 | Msa0726140 | 0.823607 | 1.264351e-53 | -8.615850e-47 |
| Msa0396600 | Msa0733290 | 0.830261 | 3.244016e-55 | -8.615850e-47 |
| Msa0396600 | Msa0743810 | 0.831324 | 1.780590e-55 | -8.615850e-47 |
| Msa0396600 | Msa0745060 | 0.853781 | 1.903730e-61 | -8.615850e-47 |
| Msa0396600 | Msa0825860 | 0.848092 | 7.639138e-60 | -8.615850e-47 |
| Msa0396600 | Msa0846330 | 0.810729 | 9.973105e-51 | -8.615850e-47 |
| Msa0396600 | Msa0846350 | 0.815632 | 8.370789e-52 | -8.615850e-47 |
| Msa0396600 | Msa0865320 | 0.849681 | 2.766305e-60 | -8.615850e-47 |
| Msa0396600 | Msa0885290 | 0.812896 | 3.366775e-51 | -8.615850e-47 |
| Msa0396600 | Msa0888370 | 0.812326 | 4.484586e-51 | -8.615850e-47 |
| Msa0396600 | Msa1016280 | 0.815277 | 1.003700e-51 | -8.615850e-47 |
| Msa0396600 | Msa1024240 | 0.840544 | 8.156849e-58 | -8.615850e-47 |
| Msa0396600 | Msa1025360 | 0.808181 | 3.513939e-50 | -8.615850e-47 |
| Msa0396600 | Msa1025370 | 0.834723 | 2.542161e-56 | -8.615850e-47 |
| Msa0396600 | Msa1044830 | 0.828876 | 7.044231e-55 | -8.615850e-47 |
| Msa0396600 | Msa1044840 | 0.815061 | 1.121228e-51 | -8.615850e-47 |
| Msa0396600 | Msa1092990 | 0.826707 | 2.340080e-54 | -8.615850e-47 |
| Msa0396600 | Msa1100980 | 0.827133 | 1.851167e-54 | -8.615850e-47 |
| Msa0396600 | Msa1135740 | 0.806894 | 6.589382e-50 | -8.615850e-47 |
| Msa0396600 | Msa1146110 | 0.831258 | 1.848185e-55 | -8.615850e-47 |
| Msa0396600 | Msa1187940 | 0.822294 | 2.558307e-53 | -8.615850e-47 |
| Msa0396600 | Msa1187950 | 0.805535 | 1.273842e-49 | -8.615850e-47 |
| Msa0396600 | Msa1269670 | 0.845248 | 4.571745e-59 | -8.615850e-47 |
| Msa0396600 | Msa1270230 | 0.822516 | 2.272029e-53 | -8.615850e-47 |
| Msa0396600 | Msa1270270 | 0.831713 | 1.428473e-55 | -8.615850e-47 |
| Msa0396600 | Msa1283330 | 0.826821 | 2.198459e-54 | -8.615850e-47 |
| Msa0396600 | Msa1287800 | 0.804250 | 2.364491e-49 | -8.615850e-47 |
| Msa0396600 | Msa1287810 | 0.816111 | 6.545496e-52 | -8.615850e-47 |
| Msa0396600 | Msa1287830 | 0.800821 | 1.204053e-48 | -8.615850e-47 |
| Msa0396600 | Msa1320300 | 0.816733 | 4.749224e-52 | -8.615850e-47 |
| Msa0396600 | Msa1340590 | 0.818236 | 2.177598e-52 | -8.615850e-47 |
| Msa0396600 | Msa1397580 | 0.811446 | 6.973777e-51 | -8.615850e-47 |
| Msa0396600 | Msa1404000 | 0.813859 | 2.067866e-51 | -8.615850e-47 |
| Msa0396600 | Msa1415310 | 0.825881 | 3.680237e-54 | -8.615850e-47 |
| Msa0396600 | Msa1422180 | 0.803850 | 2.863518e-49 | -8.615850e-47 |
| Msa0267000 | Msa0396600 | 0.820708 | 5.946503e-53 | -8.615850e-47 |
| Msa0267010 | Msa0396600 | 0.806150 | 9.461252e-50 | -8.615850e-47 |
| Msa0342240 | Msa0396600 | 0.802526 | 5.379529e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396600 | MtrunA17_Chr3g0083861 | 79.545 | 396 | 78 | 1 | 1 | 393 | 46 | 441 | 0.0 | 622 |
| Msa0396600 | MtrunA17_Chr3g0133391 | 72.280 | 386 | 101 | 2 | 11 | 391 | 3 | 387 | 0.0 | 526 |
| Msa0396600 | MtrunA17_Chr8g0346621 | 67.602 | 392 | 121 | 3 | 3 | 391 | 7 | 395 | 0.0 | 514 |
| Msa0396600 | MtrunA17_Chr2g0302581 | 68.462 | 390 | 112 | 5 | 11 | 393 | 3 | 388 | 0.0 | 508 |
| Msa0396600 | MtrunA17_Chr2g0302611 | 67.179 | 390 | 117 | 4 | 11 | 393 | 3 | 388 | 6.40e-180 | 505 |
| Msa0396600 | MtrunA17_Chr4g0023671 | 65.796 | 383 | 127 | 2 | 12 | 391 | 5 | 386 | 4.78e-177 | 498 |
| Msa0396600 | MtrunA17_Chr3g0096411 | 63.780 | 381 | 117 | 4 | 14 | 391 | 28 | 390 | 3.44e-169 | 478 |
| Msa0396600 | MtrunA17_Chr3g0133411 | 63.750 | 400 | 116 | 6 | 18 | 391 | 40 | 436 | 8.25e-169 | 479 |
| Msa0396600 | MtrunA17_Chr3g0133511 | 62.785 | 395 | 129 | 6 | 13 | 391 | 6 | 398 | 3.54e-166 | 471 |
| Msa0396600 | MtrunA17_Chr7g0233731 | 59.950 | 397 | 146 | 4 | 5 | 389 | 5 | 400 | 1.30e-161 | 461 |
| Msa0396600 | MtrunA17_Chr3g0133481 | 61.082 | 388 | 138 | 5 | 12 | 391 | 5 | 387 | 2.49e-159 | 453 |
| Msa0396600 | MtrunA17_Chr7g0233701 | 61.480 | 392 | 141 | 5 | 10 | 392 | 5 | 395 | 2.67e-155 | 443 |
| Msa0396600 | MtrunA17_Chr3g0133431 | 63.708 | 383 | 121 | 8 | 17 | 391 | 33 | 405 | 3.32e-151 | 433 |
| Msa0396600 | MtrunA17_Chr3g0083001 | 59.949 | 392 | 116 | 4 | 10 | 392 | 13 | 372 | 7.68e-147 | 421 |
| Msa0396600 | MtrunA17_Chr3g0134681 | 55.366 | 410 | 133 | 7 | 4 | 391 | 35 | 416 | 2.90e-140 | 405 |
| Msa0396600 | MtrunA17_Chr3g0083871 | 70.498 | 261 | 55 | 2 | 137 | 393 | 9 | 251 | 7.09e-121 | 350 |
| Msa0396600 | MtrunA17_Chr3g0133371 | 65.625 | 256 | 81 | 2 | 141 | 392 | 35 | 287 | 9.49e-116 | 338 |
| Msa0396600 | MtrunA17_Chr4g0046911 | 67.188 | 256 | 82 | 2 | 137 | 391 | 4 | 258 | 1.09e-115 | 337 |
| Msa0396600 | MtrunA17_Chr3g0133531 | 59.477 | 306 | 110 | 4 | 94 | 391 | 5 | 304 | 1.11e-114 | 337 |
| Msa0396600 | MtrunA17_Chr7g0233691 | 62.082 | 269 | 94 | 2 | 131 | 392 | 10 | 277 | 1.95e-111 | 327 |
| Msa0396600 | MtrunA17_Chr8g0358841 | 63.433 | 268 | 90 | 3 | 133 | 393 | 3 | 269 | 6.11e-111 | 325 |
| Msa0396600 | MtrunA17_Chr7g0233721 | 59.851 | 269 | 100 | 2 | 131 | 392 | 10 | 277 | 1.78e-104 | 310 |
| Msa0396600 | MtrunA17_Chr8g0346661 | 68.468 | 222 | 70 | 0 | 11 | 232 | 4 | 225 | 4.03e-104 | 306 |
| Msa0396600 | MtrunA17_Chr3g0083041 | 62.308 | 260 | 88 | 3 | 139 | 392 | 43 | 298 | 6.76e-99 | 296 |
| Msa0396600 | MtrunA17_Chr7g0233751 | 51.935 | 310 | 123 | 5 | 3 | 304 | 6 | 297 | 2.01e-98 | 295 |
| Msa0396600 | MtrunA17_Chr3g0141031 | 69.524 | 210 | 61 | 1 | 185 | 391 | 9 | 218 | 1.10e-93 | 280 |
| Msa0396600 | MtrunA17_Chr3g0143151 | 42.199 | 391 | 209 | 10 | 14 | 390 | 20 | 407 | 3.85e-86 | 267 |
| Msa0396600 | MtrunA17_Chr2g0302701 | 64.286 | 210 | 67 | 3 | 191 | 393 | 6 | 214 | 1.83e-84 | 256 |
| Msa0396600 | MtrunA17_Chr3g0133091 | 63.584 | 173 | 60 | 2 | 178 | 348 | 1 | 172 | 1.08e-68 | 215 |
| Msa0396600 | MtrunA17_Chr3g0132731 | 67.857 | 140 | 45 | 0 | 143 | 282 | 19 | 158 | 2.82e-61 | 194 |
| Msa0396600 | MtrunA17_Chr3g0133471 | 61.212 | 165 | 56 | 2 | 211 | 367 | 1 | 165 | 3.70e-61 | 195 |
| Msa0396600 | MtrunA17_Chr3g0133501 | 63.291 | 158 | 48 | 2 | 243 | 391 | 1 | 157 | 7.21e-61 | 194 |
| Msa0396600 | MtrunA17_Chr3g0134651 | 60.606 | 165 | 59 | 2 | 200 | 359 | 1 | 164 | 2.86e-60 | 192 |
| Msa0396600 | MtrunA17_Chr8g0346651 | 68.667 | 150 | 45 | 2 | 243 | 391 | 1 | 149 | 8.68e-60 | 191 |
| Msa0396600 | MtrunA17_Chr3g0133351 | 72.222 | 126 | 35 | 0 | 12 | 137 | 4 | 129 | 6.11e-57 | 184 |
| Msa0396600 | MtrunA17_Chr4g0046941 | 71.200 | 125 | 36 | 0 | 13 | 137 | 7 | 131 | 4.80e-54 | 176 |
| Msa0396600 | MtrunA17_Chr3g0133401 | 51.648 | 182 | 53 | 1 | 211 | 392 | 1 | 147 | 4.23e-52 | 171 |
| Msa0396600 | MtrunA17_Chr4g0046951 | 71.304 | 115 | 33 | 0 | 137 | 251 | 4 | 118 | 2.17e-51 | 168 |
| Msa0396600 | MtrunA17_Chr7g0233711 | 59.231 | 130 | 51 | 1 | 10 | 137 | 5 | 134 | 7.61e-47 | 157 |
| Msa0396600 | MtrunA17_Chr7g0233681 | 55.072 | 138 | 60 | 1 | 3 | 138 | 4 | 141 | 1.02e-46 | 156 |
| Msa0396600 | MtrunA17_Chr8g0358851 | 65.354 | 127 | 42 | 1 | 13 | 137 | 6 | 132 | 4.75e-45 | 152 |
| Msa0396600 | MtrunA17_Chr3g0134661 | 70.874 | 103 | 28 | 1 | 23 | 123 | 1 | 103 | 3.93e-43 | 145 |
| Msa0396600 | MtrunA17_Chr4g0046961 | 67.826 | 115 | 33 | 3 | 276 | 388 | 6 | 118 | 3.51e-40 | 139 |
| Msa0396600 | MtrunA17_Chr3g0133521 | 64.583 | 96 | 34 | 0 | 138 | 233 | 2 | 97 | 9.09e-36 | 126 |
| Msa0396600 | MtrunA17_Chr3g0141021 | 75.714 | 70 | 17 | 0 | 121 | 190 | 1 | 70 | 1.46e-31 | 115 |
| Msa0396600 | MtrunA17_Chr3g0132691 | 62.295 | 61 | 23 | 0 | 211 | 271 | 1 | 61 | 1.39e-18 | 79.3 |
| Msa0396600 | MtrunA17_Chr3g0133491 | 81.818 | 33 | 6 | 0 | 359 | 391 | 12 | 44 | 6.09e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396600 | AT1G47710.1 | 52.577 | 388 | 177 | 3 | 11 | 391 | 3 | 390 | 5.60e-142 | 409 |
| Msa0396600 | AT1G47710.2 | 52.835 | 388 | 176 | 3 | 11 | 391 | 30 | 417 | 2.63e-141 | 409 |
| Msa0396600 | AT3G45220.1 | 49.616 | 391 | 183 | 7 | 11 | 390 | 3 | 390 | 3.49e-125 | 367 |
| Msa0396600 | AT2G26390.1 | 48.223 | 394 | 180 | 7 | 11 | 390 | 3 | 386 | 5.85e-118 | 348 |
| Msa0396600 | AT2G25240.1 | 48.593 | 391 | 179 | 7 | 11 | 390 | 3 | 382 | 2.95e-117 | 346 |
| Msa0396600 | AT1G64030.1 | 42.199 | 391 | 193 | 6 | 11 | 390 | 3 | 371 | 1.32e-97 | 296 |
| Msa0396600 | AT2G14540.1 | 42.065 | 397 | 197 | 7 | 4 | 390 | 24 | 397 | 2.91e-95 | 291 |
| Msa0396600 | AT2G35580.1 | 42.711 | 391 | 191 | 9 | 11 | 390 | 3 | 371 | 6.67e-94 | 286 |
| Msa0396600 | AT1G62170.1 | 39.846 | 389 | 200 | 5 | 13 | 390 | 66 | 431 | 2.23e-91 | 282 |
| Msa0396600 | AT1G62170.2 | 36.730 | 422 | 200 | 6 | 13 | 390 | 66 | 464 | 1.81e-84 | 265 |
| Msa0396600 | AT1G64010.2 | 43.318 | 217 | 97 | 4 | 178 | 390 | 1 | 195 | 8.62e-54 | 177 |
| Msa0396600 | AT1G64010.1 | 43.564 | 202 | 88 | 4 | 193 | 390 | 2 | 181 | 5.25e-48 | 162 |
| Msa0396600 | AT1G62160.1 | 38.068 | 176 | 88 | 5 | 217 | 390 | 62 | 218 | 4.97e-30 | 115 |
| Msa0396600 | AT1G63280.1 | 47.458 | 118 | 58 | 2 | 134 | 249 | 5 | 120 | 2.42e-26 | 102 |
| Msa0396600 | AT1G51330.1 | 48.624 | 109 | 53 | 1 | 138 | 243 | 32 | 140 | 5.14e-23 | 95.9 |
| Msa0396600 | AT1G64020.1 | 32.143 | 112 | 73 | 3 | 18 | 127 | 10 | 120 | 1.35e-12 | 64.7 |
Find 74 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTCTACTTTAA+AGG | 0.141946 | 3_2:-15199716 | Msa0396600:CDS |
| TGATTAAAGAAGTGAATTTA+TGG | 0.223064 | 3_2:-15199817 | Msa0396600:CDS |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3_2:+15199774 | None:intergenic |
| GTTGAGATCATTGGTGGATT+TGG | 0.291308 | 3_2:+15200432 | None:intergenic |
| GGACAAAGTAGATTTATAAT+TGG | 0.309459 | 3_2:+15200273 | None:intergenic |
| GACAGTCCATCTTTAGCATT+TGG | 0.341529 | 3_2:+15199497 | None:intergenic |
| ACTGGAACCATTCTCTTTGT+TGG | 0.353661 | 3_2:-15199107 | Msa0396600:CDS |
| CTCTCAGACGCCGCTTTCAC+TGG | 0.370831 | 3_2:-15200379 | Msa0396600:CDS |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.378765 | 3_2:+15200311 | None:intergenic |
| CTTCGTCTTCTTTATAAGAA+AGG | 0.383719 | 3_2:-15199557 | Msa0396600:CDS |
| GATTAAAGAAGTGAATTTAT+GGG | 0.386003 | 3_2:-15199816 | Msa0396600:CDS |
| TCTCATATGTTGAAGGAGTT+AGG | 0.397032 | 3_2:-15199353 | Msa0396600:CDS |
| TTTCTTCCAAATGCTAAAGA+TGG | 0.400337 | 3_2:-15199503 | Msa0396600:CDS |
| GTCAGCATTGGTTGAGAAGT+TGG | 0.411230 | 3_2:-15199477 | Msa0396600:CDS |
| TGAAACTTCTCATATGTTGA+AGG | 0.426857 | 3_2:-15199360 | Msa0396600:CDS |
| TTCTGTCGAGAACAGATGTT+TGG | 0.430392 | 3_2:+15200564 | None:intergenic |
| GGAATCAGACGTTTGATGTA+TGG | 0.438429 | 3_2:-15199688 | Msa0396600:CDS |
| GGCGAGGTTGTTGAGATCAT+TGG | 0.438821 | 3_2:+15200423 | None:intergenic |
| TGTCGAGGGAAACATTTGTT+TGG | 0.443653 | 3_2:+15200590 | None:intergenic |
| GTTAAGCTACCAACTGATCT+TGG | 0.446246 | 3_2:+15199752 | None:intergenic |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3_2:+15200312 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3_2:-15199233 | Msa0396600:CDS |
| CTCTGTTGATTTCATGACCA+AGG | 0.457766 | 3_2:-15200251 | Msa0396600:intron |
| CGATGATGCTTAGCACAACT+TGG | 0.463699 | 3_2:+15200506 | None:intergenic |
| TGACTGAGCTTCCATTCAAA+AGG | 0.469619 | 3_2:+15199642 | None:intergenic |
| CAGACGCCGCTTTCACTGGC+GGG | 0.477109 | 3_2:-15200375 | Msa0396600:CDS |
| TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3_2:+15199137 | None:intergenic |
| AGATTATAGTGTAGTAAGTC+AGG | 0.483657 | 3_2:+15199446 | None:intergenic |
| GACGTTTGATGTATGGAAAA+CGG | 0.491740 | 3_2:-15199681 | Msa0396600:CDS |
| CATCCCCTCGGTAGTCATGA+AGG | 0.493267 | 3_2:+15199613 | None:intergenic |
| GTGCTAAGCATCATCGCTGC+TGG | 0.494658 | 3_2:-15200499 | Msa0396600:CDS |
| CTGATTAGAGAAGATTCGAC+TGG | 0.501644 | 3_2:-15199125 | Msa0396600:CDS |
| CACTCTACTTTAAAGGAGCA+TGG | 0.505591 | 3_2:-15199709 | Msa0396600:CDS |
| CTTCTTCCTCCAAGATCAGT+TGG | 0.507731 | 3_2:-15199761 | Msa0396600:CDS |
| TCATCTACTTCTACTTCAGC+AGG | 0.509971 | 3_2:+15199419 | None:intergenic |
| ATCATCGCTGCTGGCTCTGA+GGG | 0.511801 | 3_2:-15200490 | Msa0396600:CDS |
| CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3_2:+15199138 | None:intergenic |
| CATCATCGCTGCTGGCTCTG+AGG | 0.516897 | 3_2:-15200491 | Msa0396600:CDS |
| GTTAAACCTCCAGGAGTGAA+AGG | 0.523766 | 3_2:+15199320 | None:intergenic |
| CATTGGTGGATTTGGACTTG+AGG | 0.527026 | 3_2:+15200440 | None:intergenic |
| TTTGGTTGGTGATTGATTCA+CGG | 0.528455 | 3_2:+15200608 | None:intergenic |
| CACTTGTCCAACAAAGAGAA+TGG | 0.528533 | 3_2:+15199100 | None:intergenic |
| TGCTAAGATCACTGATCAAG+AGG | 0.544299 | 3_2:+15199071 | None:intergenic |
| TCAGACGCCGCTTTCACTGG+CGG | 0.550246 | 3_2:-15200376 | Msa0396600:CDS |
| GCGAGGCCCGCCAGTGAAAG+CGG | 0.556128 | 3_2:+15200369 | None:intergenic |
| GAGGGAAACATTTGTTTGGT+TGG | 0.557895 | 3_2:+15200594 | None:intergenic |
| GAAATATATTAGAAACAGAA+AGG | 0.558448 | 3_2:+15199264 | None:intergenic |
| GAGGTTGTTGAGATCATTGG+TGG | 0.573967 | 3_2:+15200426 | None:intergenic |
| AAGCTACCAACTGATCTTGG+AGG | 0.580889 | 3_2:+15199755 | None:intergenic |
| ATGAATAAACTGCATCCCCT+CGG | 0.585021 | 3_2:+15199601 | None:intergenic |
| GTCGAGAAGCTGTTGTTGTG+TGG | 0.586119 | 3_2:+15200465 | None:intergenic |
| CAGATGTTTGGCCATGTCGA+GGG | 0.587024 | 3_2:+15200576 | None:intergenic |
| TGCATTAGCAAAGATGAGGC+GGG | 0.588872 | 3_2:+15199730 | None:intergenic |
| TTTGAATGGAAGCTCAGTCA+AGG | 0.589562 | 3_2:-15199639 | Msa0396600:CDS |
| ACAGATGTTTGGCCATGTCG+AGG | 0.591331 | 3_2:+15200575 | None:intergenic |
| TCGAGAAGCTGTTGTTGTGT+GGG | 0.605173 | 3_2:+15200466 | None:intergenic |
| GACGATAGAAACAAGGTGAG+AGG | 0.606218 | 3_2:+15200402 | None:intergenic |
| AACAAATGTTTCCCTCGACA+TGG | 0.611811 | 3_2:-15200587 | Msa0396600:CDS |
| ATCCCCTCGGTAGTCATGAA+GGG | 0.614506 | 3_2:+15199614 | None:intergenic |
| TATGTTGAAGGAGTTAGGAG+TGG | 0.615125 | 3_2:-15199348 | Msa0396600:CDS |
| CTGAGAGGACGATAGAAACA+AGG | 0.615824 | 3_2:+15200395 | None:intergenic |
| GTGCATTAGCAAAGATGAGG+CGG | 0.619571 | 3_2:+15199729 | None:intergenic |
| CAGTGAAAGCGGCGTCTGAG+AGG | 0.622496 | 3_2:+15200380 | None:intergenic |
| AGCACAACTTGGAGTGACAA+TGG | 0.624764 | 3_2:+15200517 | None:intergenic |
| GTTCCCTTCATGACTACCGA+GGG | 0.628600 | 3_2:-15199617 | Msa0396600:CDS |
| TAAAGATGGACTGTCAGCAT+TGG | 0.637494 | 3_2:-15199489 | Msa0396600:CDS |
| TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3_2:+15199141 | None:intergenic |
| AGAGTGCATTAGCAAAGATG+AGG | 0.641780 | 3_2:+15199726 | None:intergenic |
| TAGAAACAAGGTGAGAGGCG+AGG | 0.684792 | 3_2:+15200407 | None:intergenic |
| GGTTCCCTTCATGACTACCG+AGG | 0.692485 | 3_2:-15199618 | Msa0396600:CDS |
| ATACACCATCAACAAAAGAG+AGG | 0.697514 | 3_2:+15200347 | None:intergenic |
| CCATCAACAAAAGAGAGGCG+AGG | 0.704628 | 3_2:+15200352 | None:intergenic |
| CTTGGTCATGAAATCAACAG+AGG | 0.726746 | 3_2:+15200252 | None:intergenic |
| TTCCCTTCATGACTACCGAG+GGG | 0.739663 | 3_2:-15199616 | Msa0396600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTATTTTATTTTTGA+TGG | + | chr3_2:15199544-15199563 | None:intergenic | 10.0% |
| !!! | TGTTTTTATTTTATTTTTGA+TGG | + | chr3_2:15199544-15199563 | None:intergenic | 10.0% |
| !! | ATTTCATGTAAATTAATTCA+AGG | - | chr3_2:15199578-15199597 | Msa0396600:CDS | 15.0% |
| !! | TTTCATGTAAATTAATTCAA+GGG | - | chr3_2:15199579-15199598 | Msa0396600:CDS | 15.0% |
| !! | AAAAAAAATCTATAGTACTA+AGG | - | chr3_2:15199701-15199720 | Msa0396600:CDS | 15.0% |
| !!! | ACTGATTTTTAAATATGATA+TGG | - | chr3_2:15199861-15199880 | Msa0396600:intron | 15.0% |
| !! | ATTTCATGTAAATTAATTCA+AGG | - | chr3_2:15199578-15199597 | Msa0396600:CDS | 15.0% |
| !! | TTTCATGTAAATTAATTCAA+GGG | - | chr3_2:15199579-15199598 | Msa0396600:CDS | 15.0% |
| !! | AAAAAAAATCTATAGTACTA+AGG | - | chr3_2:15199701-15199720 | Msa0396600:CDS | 15.0% |
| !!! | ACTGATTTTTAAATATGATA+TGG | - | chr3_2:15199861-15199880 | Msa0396600:intron | 15.0% |
| !!! | ACTATAGATTTTTTTTGAAG+AGG | + | chr3_2:15199697-15199716 | None:intergenic | 20.0% |
| !! | GTGAAAATTAAACCAATAAA+AGG | - | chr3_2:15199785-15199804 | Msa0396600:CDS | 20.0% |
| !! | TGATTAAAGAAGTGAATTTA+TGG | - | chr3_2:15199902-15199921 | Msa0396600:intron | 20.0% |
| !! | GATTAAAGAAGTGAATTTAT+GGG | - | chr3_2:15199903-15199922 | Msa0396600:intron | 20.0% |
| !!! | TCATATGAAATTTTGAATCT+TGG | + | chr3_2:15200336-15200355 | None:intergenic | 20.0% |
| !! | GAAATATATTAGAAACAGAA+AGG | + | chr3_2:15200458-15200477 | None:intergenic | 20.0% |
| !!! | ACTATAGATTTTTTTTGAAG+AGG | + | chr3_2:15199697-15199716 | None:intergenic | 20.0% |
| !! | GTGAAAATTAAACCAATAAA+AGG | - | chr3_2:15199785-15199804 | Msa0396600:CDS | 20.0% |
| !! | TGATTAAAGAAGTGAATTTA+TGG | - | chr3_2:15199902-15199921 | Msa0396600:intron | 20.0% |
| !! | GATTAAAGAAGTGAATTTAT+GGG | - | chr3_2:15199903-15199922 | Msa0396600:intron | 20.0% |
| !!! | TCATATGAAATTTTGAATCT+TGG | + | chr3_2:15200336-15200355 | None:intergenic | 20.0% |
| !! | GAAATATATTAGAAACAGAA+AGG | + | chr3_2:15200458-15200477 | None:intergenic | 20.0% |
| ! | GGACAAAGTAGATTTATAAT+TGG | + | chr3_2:15199449-15199468 | None:intergenic | 25.0% |
| ! | AGATTGCTGTGAAAAAAAAA+GGG | + | chr3_2:15199510-15199529 | None:intergenic | 25.0% |
| ! | TTCTTTAATCAGTGTAGAAT+TGG | + | chr3_2:15199633-15199652 | None:intergenic | 25.0% |
| ! | TGATGCTAGAAAACAATAAA+GGG | + | chr3_2:15199743-15199762 | None:intergenic | 25.0% |
| ! | TTGATGCTAGAAAACAATAA+AGG | + | chr3_2:15199744-15199763 | None:intergenic | 25.0% |
| !! | AGCATAAGAAAACCTTTTAT+TGG | + | chr3_2:15199800-15199819 | None:intergenic | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | - | chr3_2:15200066-15200085 | Msa0396600:intron | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | - | chr3_2:15200486-15200505 | Msa0396600:CDS | 25.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | + | chr3_2:15200584-15200603 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | + | chr3_2:15200585-15200604 | None:intergenic | 25.0% |
| ! | GGACAAAGTAGATTTATAAT+TGG | + | chr3_2:15199449-15199468 | None:intergenic | 25.0% |
| ! | AGATTGCTGTGAAAAAAAAA+GGG | + | chr3_2:15199510-15199529 | None:intergenic | 25.0% |
| ! | TTCTTTAATCAGTGTAGAAT+TGG | + | chr3_2:15199633-15199652 | None:intergenic | 25.0% |
| ! | TGATGCTAGAAAACAATAAA+GGG | + | chr3_2:15199743-15199762 | None:intergenic | 25.0% |
| ! | TTGATGCTAGAAAACAATAA+AGG | + | chr3_2:15199744-15199763 | None:intergenic | 25.0% |
| !! | AGCATAAGAAAACCTTTTAT+TGG | + | chr3_2:15199800-15199819 | None:intergenic | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | - | chr3_2:15200066-15200085 | Msa0396600:intron | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | - | chr3_2:15200486-15200505 | Msa0396600:CDS | 25.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | + | chr3_2:15200584-15200603 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | + | chr3_2:15200585-15200604 | None:intergenic | 25.0% |
| CAGATTGCTGTGAAAAAAAA+AGG | + | chr3_2:15199511-15199530 | None:intergenic | 30.0% | |
| CTACTTTCAATAACAATCCT+AGG | - | chr3_2:15199604-15199623 | Msa0396600:CDS | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | + | chr3_2:15199948-15199967 | None:intergenic | 30.0% | |
| CTTCGTCTTCTTTATAAGAA+AGG | - | chr3_2:15200162-15200181 | Msa0396600:intron | 30.0% | |
| TTTCTTCCAAATGCTAAAGA+TGG | - | chr3_2:15200216-15200235 | Msa0396600:intron | 30.0% | |
| AGATTATAGTGTAGTAAGTC+AGG | + | chr3_2:15200276-15200295 | None:intergenic | 30.0% | |
| TGAAACTTCTCATATGTTGA+AGG | - | chr3_2:15200359-15200378 | Msa0396600:CDS | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | + | chr3_2:15200581-15200600 | None:intergenic | 30.0% | |
| CAGATTGCTGTGAAAAAAAA+AGG | + | chr3_2:15199511-15199530 | None:intergenic | 30.0% | |
| CTACTTTCAATAACAATCCT+AGG | - | chr3_2:15199604-15199623 | Msa0396600:CDS | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | + | chr3_2:15199948-15199967 | None:intergenic | 30.0% | |
| CTTCGTCTTCTTTATAAGAA+AGG | - | chr3_2:15200162-15200181 | Msa0396600:intron | 30.0% | |
| TTTCTTCCAAATGCTAAAGA+TGG | - | chr3_2:15200216-15200235 | Msa0396600:intron | 30.0% | |
| AGATTATAGTGTAGTAAGTC+AGG | + | chr3_2:15200276-15200295 | None:intergenic | 30.0% | |
| TGAAACTTCTCATATGTTGA+AGG | - | chr3_2:15200359-15200378 | Msa0396600:CDS | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | + | chr3_2:15200581-15200600 | None:intergenic | 30.0% | |
| !! | TTTGGTTGGTGATTGATTCA+CGG | + | chr3_2:15199114-15199133 | None:intergenic | 35.0% |
| ATACACCATCAACAAAAGAG+AGG | + | chr3_2:15199375-15199394 | None:intergenic | 35.0% | |
| !!! | TCTCTTTTGTTGATGGTGTA+TGG | - | chr3_2:15199374-15199393 | Msa0396600:CDS | 35.0% |
| !!! | CTCTTTTGTTGATGGTGTAT+GGG | - | chr3_2:15199375-15199394 | Msa0396600:CDS | 35.0% |
| !! | GACAAGATTCTTTTGAAGGA+AGG | + | chr3_2:15199424-15199443 | None:intergenic | 35.0% |
| ! | GGAAGACAAGATTCTTTTGA+AGG | + | chr3_2:15199428-15199447 | None:intergenic | 35.0% |
| ! | TAACAAAGTGTTTCGTCACA+TGG | + | chr3_2:15199670-15199689 | None:intergenic | 35.0% |
| TGCTAGAAAACAATAAAGGG+AGG | + | chr3_2:15199740-15199759 | None:intergenic | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | - | chr3_2:15200003-15200022 | Msa0396600:intron | 35.0% | |
| GACGTTTGATGTATGGAAAA+CGG | - | chr3_2:15200038-15200057 | Msa0396600:intron | 35.0% | |
| TCTCATATGTTGAAGGAGTT+AGG | - | chr3_2:15200366-15200385 | Msa0396600:CDS | 35.0% | |
| TCCTGGAGGTTTAACAAAAA+TGG | - | chr3_2:15200407-15200426 | Msa0396600:CDS | 35.0% | |
| !! | ACCATTTTTGTTAAACCTCC+AGG | + | chr3_2:15200411-15200430 | None:intergenic | 35.0% |
| TGGAGGTTTAACAAAAATGG+TGG | - | chr3_2:15200410-15200429 | Msa0396600:CDS | 35.0% | |
| !! | TTTGGTTGGTGATTGATTCA+CGG | + | chr3_2:15199114-15199133 | None:intergenic | 35.0% |
| ATACACCATCAACAAAAGAG+AGG | + | chr3_2:15199375-15199394 | None:intergenic | 35.0% | |
| !!! | TCTCTTTTGTTGATGGTGTA+TGG | - | chr3_2:15199374-15199393 | Msa0396600:CDS | 35.0% |
| !!! | CTCTTTTGTTGATGGTGTAT+GGG | - | chr3_2:15199375-15199394 | Msa0396600:CDS | 35.0% |
| !! | GACAAGATTCTTTTGAAGGA+AGG | + | chr3_2:15199424-15199443 | None:intergenic | 35.0% |
| ! | GGAAGACAAGATTCTTTTGA+AGG | + | chr3_2:15199428-15199447 | None:intergenic | 35.0% |
| ! | TAACAAAGTGTTTCGTCACA+TGG | + | chr3_2:15199670-15199689 | None:intergenic | 35.0% |
| TGCTAGAAAACAATAAAGGG+AGG | + | chr3_2:15199740-15199759 | None:intergenic | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | - | chr3_2:15200003-15200022 | Msa0396600:intron | 35.0% | |
| GACGTTTGATGTATGGAAAA+CGG | - | chr3_2:15200038-15200057 | Msa0396600:intron | 35.0% | |
| TCTCATATGTTGAAGGAGTT+AGG | - | chr3_2:15200366-15200385 | Msa0396600:CDS | 35.0% | |
| TCCTGGAGGTTTAACAAAAA+TGG | - | chr3_2:15200407-15200426 | Msa0396600:CDS | 35.0% | |
| !! | ACCATTTTTGTTAAACCTCC+AGG | + | chr3_2:15200411-15200430 | None:intergenic | 35.0% |
| TGGAGGTTTAACAAAAATGG+TGG | - | chr3_2:15200410-15200429 | Msa0396600:CDS | 35.0% | |
| GAGGGAAACATTTGTTTGGT+TGG | + | chr3_2:15199128-15199147 | None:intergenic | 40.0% | |
| TGTCGAGGGAAACATTTGTT+TGG | + | chr3_2:15199132-15199151 | None:intergenic | 40.0% | |
| AACAAATGTTTCCCTCGACA+TGG | - | chr3_2:15199132-15199151 | Msa0396600:CDS | 40.0% | |
| TTCTGTCGAGAACAGATGTT+TGG | + | chr3_2:15199158-15199177 | None:intergenic | 40.0% | |
| !! | GTTGAGATCATTGGTGGATT+TGG | + | chr3_2:15199290-15199309 | None:intergenic | 40.0% |
| GAAGGAAGGTTGAAGAGAAA+GGG | + | chr3_2:15199410-15199429 | None:intergenic | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | + | chr3_2:15199411-15199430 | None:intergenic | 40.0% | |
| CTTGGTCATGAAATCAACAG+AGG | + | chr3_2:15199470-15199489 | None:intergenic | 40.0% | |
| !! | CTCTGTTGATTTCATGACCA+AGG | - | chr3_2:15199468-15199487 | Msa0396600:CDS | 40.0% |
| CAGTGTAGAATTGGTATCCT+AGG | + | chr3_2:15199624-15199643 | None:intergenic | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | - | chr3_2:15199922-15199941 | Msa0396600:intron | 40.0% | |
| GTTAAGCTACCAACTGATCT+TGG | + | chr3_2:15199970-15199989 | None:intergenic | 40.0% | |
| AGAGTGCATTAGCAAAGATG+AGG | + | chr3_2:15199996-15200015 | None:intergenic | 40.0% | |
| ! | CACTCTACTTTAAAGGAGCA+TGG | - | chr3_2:15200010-15200029 | Msa0396600:intron | 40.0% |
| GGAATCAGACGTTTGATGTA+TGG | - | chr3_2:15200031-15200050 | Msa0396600:intron | 40.0% | |
| TGACTGAGCTTCCATTCAAA+AGG | + | chr3_2:15200080-15200099 | None:intergenic | 40.0% | |
| TTTGAATGGAAGCTCAGTCA+AGG | - | chr3_2:15200080-15200099 | Msa0396600:intron | 40.0% | |
| ATGAATAAACTGCATCCCCT+CGG | + | chr3_2:15200121-15200140 | None:intergenic | 40.0% | |
| GACAGTCCATCTTTAGCATT+TGG | + | chr3_2:15200225-15200244 | None:intergenic | 40.0% | |
| !! | TAAAGATGGACTGTCAGCAT+TGG | - | chr3_2:15200230-15200249 | Msa0396600:intron | 40.0% |
| TCATCTACTTCTACTTCAGC+AGG | + | chr3_2:15200303-15200322 | None:intergenic | 40.0% | |
| TATGTTGAAGGAGTTAGGAG+TGG | - | chr3_2:15200371-15200390 | Msa0396600:CDS | 40.0% | |
| CTGATTAGAGAAGATTCGAC+TGG | - | chr3_2:15200594-15200613 | Msa0396600:CDS | 40.0% | |
| ACTGGAACCATTCTCTTTGT+TGG | - | chr3_2:15200612-15200631 | Msa0396600:CDS | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | + | chr3_2:15200622-15200641 | None:intergenic | 40.0% | |
| GAGGGAAACATTTGTTTGGT+TGG | + | chr3_2:15199128-15199147 | None:intergenic | 40.0% | |
| TGTCGAGGGAAACATTTGTT+TGG | + | chr3_2:15199132-15199151 | None:intergenic | 40.0% | |
| AACAAATGTTTCCCTCGACA+TGG | - | chr3_2:15199132-15199151 | Msa0396600:CDS | 40.0% | |
| TTCTGTCGAGAACAGATGTT+TGG | + | chr3_2:15199158-15199177 | None:intergenic | 40.0% | |
| !! | GTTGAGATCATTGGTGGATT+TGG | + | chr3_2:15199290-15199309 | None:intergenic | 40.0% |
| GAAGGAAGGTTGAAGAGAAA+GGG | + | chr3_2:15199410-15199429 | None:intergenic | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | + | chr3_2:15199411-15199430 | None:intergenic | 40.0% | |
| CTTGGTCATGAAATCAACAG+AGG | + | chr3_2:15199470-15199489 | None:intergenic | 40.0% | |
| !! | CTCTGTTGATTTCATGACCA+AGG | - | chr3_2:15199468-15199487 | Msa0396600:CDS | 40.0% |
| CAGTGTAGAATTGGTATCCT+AGG | + | chr3_2:15199624-15199643 | None:intergenic | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | - | chr3_2:15199922-15199941 | Msa0396600:intron | 40.0% | |
| GTTAAGCTACCAACTGATCT+TGG | + | chr3_2:15199970-15199989 | None:intergenic | 40.0% | |
| AGAGTGCATTAGCAAAGATG+AGG | + | chr3_2:15199996-15200015 | None:intergenic | 40.0% | |
| ! | CACTCTACTTTAAAGGAGCA+TGG | - | chr3_2:15200010-15200029 | Msa0396600:intron | 40.0% |
| GGAATCAGACGTTTGATGTA+TGG | - | chr3_2:15200031-15200050 | Msa0396600:intron | 40.0% | |
| TGACTGAGCTTCCATTCAAA+AGG | + | chr3_2:15200080-15200099 | None:intergenic | 40.0% | |
| TTTGAATGGAAGCTCAGTCA+AGG | - | chr3_2:15200080-15200099 | Msa0396600:intron | 40.0% | |
| ATGAATAAACTGCATCCCCT+CGG | + | chr3_2:15200121-15200140 | None:intergenic | 40.0% | |
| GACAGTCCATCTTTAGCATT+TGG | + | chr3_2:15200225-15200244 | None:intergenic | 40.0% | |
| !! | TAAAGATGGACTGTCAGCAT+TGG | - | chr3_2:15200230-15200249 | Msa0396600:intron | 40.0% |
| TCATCTACTTCTACTTCAGC+AGG | + | chr3_2:15200303-15200322 | None:intergenic | 40.0% | |
| TATGTTGAAGGAGTTAGGAG+TGG | - | chr3_2:15200371-15200390 | Msa0396600:CDS | 40.0% | |
| CTGATTAGAGAAGATTCGAC+TGG | - | chr3_2:15200594-15200613 | Msa0396600:CDS | 40.0% | |
| ACTGGAACCATTCTCTTTGT+TGG | - | chr3_2:15200612-15200631 | Msa0396600:CDS | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | + | chr3_2:15200622-15200641 | None:intergenic | 40.0% | |
| AGCACAACTTGGAGTGACAA+TGG | + | chr3_2:15199205-15199224 | None:intergenic | 45.0% | |
| CGATGATGCTTAGCACAACT+TGG | + | chr3_2:15199216-15199235 | None:intergenic | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | + | chr3_2:15199256-15199275 | None:intergenic | 45.0% | |
| !! | CATTGGTGGATTTGGACTTG+AGG | + | chr3_2:15199282-15199301 | None:intergenic | 45.0% |
| GAGGTTGTTGAGATCATTGG+TGG | + | chr3_2:15199296-15199315 | None:intergenic | 45.0% | |
| GACGATAGAAACAAGGTGAG+AGG | + | chr3_2:15199320-15199339 | None:intergenic | 45.0% | |
| CTGAGAGGACGATAGAAACA+AGG | + | chr3_2:15199327-15199346 | None:intergenic | 45.0% | |
| GAGCTGTGTAACACAAACCT+TGG | + | chr3_2:15199488-15199507 | None:intergenic | 45.0% | |
| TTCGTCACATGGCACATACA+TGG | + | chr3_2:15199659-15199678 | None:intergenic | 45.0% | |
| CTTCTTCCTCCAAGATCAGT+TGG | - | chr3_2:15199958-15199977 | Msa0396600:intron | 45.0% | |
| AAGCTACCAACTGATCTTGG+AGG | + | chr3_2:15199967-15199986 | None:intergenic | 45.0% | |
| TGCATTAGCAAAGATGAGGC+GGG | + | chr3_2:15199992-15200011 | None:intergenic | 45.0% | |
| GTGCATTAGCAAAGATGAGG+CGG | + | chr3_2:15199993-15200012 | None:intergenic | 45.0% | |
| !! | GTCAGCATTGGTTGAGAAGT+TGG | - | chr3_2:15200242-15200261 | Msa0396600:intron | 45.0% |
| !! | GTGGTTTTACCTTTCACTCC+TGG | - | chr3_2:15200390-15200409 | Msa0396600:CDS | 45.0% |
| ! | GTTTTACCTTTCACTCCTGG+AGG | - | chr3_2:15200393-15200412 | Msa0396600:CDS | 45.0% |
| GTTAAACCTCCAGGAGTGAA+AGG | + | chr3_2:15200402-15200421 | None:intergenic | 45.0% | |
| AGCACAACTTGGAGTGACAA+TGG | + | chr3_2:15199205-15199224 | None:intergenic | 45.0% | |
| CGATGATGCTTAGCACAACT+TGG | + | chr3_2:15199216-15199235 | None:intergenic | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | + | chr3_2:15199256-15199275 | None:intergenic | 45.0% | |
| !! | CATTGGTGGATTTGGACTTG+AGG | + | chr3_2:15199282-15199301 | None:intergenic | 45.0% |
| GAGGTTGTTGAGATCATTGG+TGG | + | chr3_2:15199296-15199315 | None:intergenic | 45.0% | |
| GACGATAGAAACAAGGTGAG+AGG | + | chr3_2:15199320-15199339 | None:intergenic | 45.0% | |
| CTGAGAGGACGATAGAAACA+AGG | + | chr3_2:15199327-15199346 | None:intergenic | 45.0% | |
| GAGCTGTGTAACACAAACCT+TGG | + | chr3_2:15199488-15199507 | None:intergenic | 45.0% | |
| TTCGTCACATGGCACATACA+TGG | + | chr3_2:15199659-15199678 | None:intergenic | 45.0% | |
| CTTCTTCCTCCAAGATCAGT+TGG | - | chr3_2:15199958-15199977 | Msa0396600:intron | 45.0% | |
| AAGCTACCAACTGATCTTGG+AGG | + | chr3_2:15199967-15199986 | None:intergenic | 45.0% | |
| TGCATTAGCAAAGATGAGGC+GGG | + | chr3_2:15199992-15200011 | None:intergenic | 45.0% | |
| GTGCATTAGCAAAGATGAGG+CGG | + | chr3_2:15199993-15200012 | None:intergenic | 45.0% | |
| !! | GTCAGCATTGGTTGAGAAGT+TGG | - | chr3_2:15200242-15200261 | Msa0396600:intron | 45.0% |
| !! | GTGGTTTTACCTTTCACTCC+TGG | - | chr3_2:15200390-15200409 | Msa0396600:CDS | 45.0% |
| ! | GTTTTACCTTTCACTCCTGG+AGG | - | chr3_2:15200393-15200412 | Msa0396600:CDS | 45.0% |
| GTTAAACCTCCAGGAGTGAA+AGG | + | chr3_2:15200402-15200421 | None:intergenic | 45.0% | |
| CAGATGTTTGGCCATGTCGA+GGG | + | chr3_2:15199146-15199165 | None:intergenic | 50.0% | |
| ACAGATGTTTGGCCATGTCG+AGG | + | chr3_2:15199147-15199166 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | + | chr3_2:15199257-15199276 | None:intergenic | 50.0% | |
| GGCGAGGTTGTTGAGATCAT+TGG | + | chr3_2:15199299-15199318 | None:intergenic | 50.0% | |
| TAGAAACAAGGTGAGAGGCG+AGG | + | chr3_2:15199315-15199334 | None:intergenic | 50.0% | |
| CCATCAACAAAAGAGAGGCG+AGG | + | chr3_2:15199370-15199389 | None:intergenic | 50.0% | |
| ! | CCTCGCCTCTCTTTTGTTGA+TGG | - | chr3_2:15199367-15199386 | Msa0396600:CDS | 50.0% |
| GTTCCCTTCATGACTACCGA+GGG | - | chr3_2:15200102-15200121 | Msa0396600:intron | 50.0% | |
| TTCCCTTCATGACTACCGAG+GGG | - | chr3_2:15200103-15200122 | Msa0396600:intron | 50.0% | |
| ATCCCCTCGGTAGTCATGAA+GGG | + | chr3_2:15200108-15200127 | None:intergenic | 50.0% | |
| CAGATGTTTGGCCATGTCGA+GGG | + | chr3_2:15199146-15199165 | None:intergenic | 50.0% | |
| ACAGATGTTTGGCCATGTCG+AGG | + | chr3_2:15199147-15199166 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | + | chr3_2:15199257-15199276 | None:intergenic | 50.0% | |
| GGCGAGGTTGTTGAGATCAT+TGG | + | chr3_2:15199299-15199318 | None:intergenic | 50.0% | |
| TAGAAACAAGGTGAGAGGCG+AGG | + | chr3_2:15199315-15199334 | None:intergenic | 50.0% | |
| CCATCAACAAAAGAGAGGCG+AGG | + | chr3_2:15199370-15199389 | None:intergenic | 50.0% | |
| ! | CCTCGCCTCTCTTTTGTTGA+TGG | - | chr3_2:15199367-15199386 | Msa0396600:CDS | 50.0% |
| GTTCCCTTCATGACTACCGA+GGG | - | chr3_2:15200102-15200121 | Msa0396600:intron | 50.0% | |
| TTCCCTTCATGACTACCGAG+GGG | - | chr3_2:15200103-15200122 | Msa0396600:intron | 50.0% | |
| ATCCCCTCGGTAGTCATGAA+GGG | + | chr3_2:15200108-15200127 | None:intergenic | 50.0% | |
| GTGCTAAGCATCATCGCTGC+TGG | - | chr3_2:15199220-15199239 | Msa0396600:CDS | 55.0% | |
| !! | ATCATCGCTGCTGGCTCTGA+GGG | - | chr3_2:15199229-15199248 | Msa0396600:CDS | 55.0% |
| GGTTCCCTTCATGACTACCG+AGG | - | chr3_2:15200101-15200120 | Msa0396600:intron | 55.0% | |
| CATCCCCTCGGTAGTCATGA+AGG | + | chr3_2:15200109-15200128 | None:intergenic | 55.0% | |
| GTGCTAAGCATCATCGCTGC+TGG | - | chr3_2:15199220-15199239 | Msa0396600:CDS | 55.0% | |
| !! | ATCATCGCTGCTGGCTCTGA+GGG | - | chr3_2:15199229-15199248 | Msa0396600:CDS | 55.0% |
| GGTTCCCTTCATGACTACCG+AGG | - | chr3_2:15200101-15200120 | Msa0396600:intron | 55.0% | |
| CATCCCCTCGGTAGTCATGA+AGG | + | chr3_2:15200109-15200128 | None:intergenic | 55.0% | |
| !! | CATCATCGCTGCTGGCTCTG+AGG | - | chr3_2:15199228-15199247 | Msa0396600:CDS | 60.0% |
| CAGTGAAAGCGGCGTCTGAG+AGG | + | chr3_2:15199342-15199361 | None:intergenic | 60.0% | |
| ! | CTCTCAGACGCCGCTTTCAC+TGG | - | chr3_2:15199340-15199359 | Msa0396600:CDS | 60.0% |
| ! | TCAGACGCCGCTTTCACTGG+CGG | - | chr3_2:15199343-15199362 | Msa0396600:CDS | 60.0% |
| !! | CATCATCGCTGCTGGCTCTG+AGG | - | chr3_2:15199228-15199247 | Msa0396600:CDS | 60.0% |
| CAGTGAAAGCGGCGTCTGAG+AGG | + | chr3_2:15199342-15199361 | None:intergenic | 60.0% | |
| ! | CTCTCAGACGCCGCTTTCAC+TGG | - | chr3_2:15199340-15199359 | Msa0396600:CDS | 60.0% |
| ! | TCAGACGCCGCTTTCACTGG+CGG | - | chr3_2:15199343-15199362 | Msa0396600:CDS | 60.0% |
| ! | CAGACGCCGCTTTCACTGGC+GGG | - | chr3_2:15199344-15199363 | Msa0396600:CDS | 65.0% |
| ! | CAGACGCCGCTTTCACTGGC+GGG | - | chr3_2:15199344-15199363 | Msa0396600:CDS | 65.0% |
| GCGAGGCCCGCCAGTGAAAG+CGG | + | chr3_2:15199353-15199372 | None:intergenic | 70.0% | |
| GCGAGGCCCGCCAGTGAAAG+CGG | + | chr3_2:15199353-15199372 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 15199079 | 15200662 | 15199079 | ID=Msa0396600;Name=Msa0396600 |
| chr3_2 | mRNA | 15199079 | 15200662 | 15199079 | ID=Msa0396600-mRNA-1;Parent=Msa0396600;Name=Msa0396600-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|2|0|393 |
| chr3_2 | exon | 15200252 | 15200662 | 15200252 | ID=Msa0396600-mRNA-1:exon:3381;Parent=Msa0396600-mRNA-1 |
| chr3_2 | exon | 15199079 | 15199849 | 15199079 | ID=Msa0396600-mRNA-1:exon:3380;Parent=Msa0396600-mRNA-1 |
| chr3_2 | CDS | 15200252 | 15200662 | 15200252 | ID=Msa0396600-mRNA-1:cds;Parent=Msa0396600-mRNA-1 |
| chr3_2 | CDS | 15199079 | 15199849 | 15199079 | ID=Msa0396600-mRNA-1:cds;Parent=Msa0396600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
