AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1133750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133750 MtrunA17_Chr7g0245261 97.191 356 7 2 4 359 1 353 0.0 684
Msa1133750 MtrunA17_Chr7g0245291 76.968 343 64 5 2 343 17 345 4.88e-166 467
Msa1133750 MtrunA17_Chr7g0240091 34.934 229 129 8 113 324 223 448 6.35e-30 119
Msa1133750 MtrunA17_Chr4g0020011 33.333 243 142 6 98 324 139 377 3.00e-28 113
Msa1133750 MtrunA17_Chr2g0320711 31.739 230 135 8 113 324 210 435 1.38e-23 101
Msa1133750 MtrunA17_Chr4g0039291 30.568 229 142 4 111 324 162 388 2.88e-23 99.8
Msa1133750 MtrunA17_Chr3g0090071 29.825 228 143 6 111 324 163 387 7.18e-22 95.9
Msa1133750 MtrunA17_Chr3g0114241 29.661 236 145 6 109 324 482 716 8.13e-21 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133750 AT3G08640.1 67.578 256 73 2 94 347 90 337 8.46e-124 360
Msa1133750 AT3G08630.1 72.581 248 63 3 102 347 95 339 5.41e-123 358
Msa1133750 AT2G37860.3 34.694 245 139 9 99 324 190 432 5.02e-30 119
Msa1133750 AT2G37860.4 34.694 245 139 9 99 324 190 432 5.02e-30 119
Msa1133750 AT5G12470.1 33.913 230 137 5 111 326 157 385 2.48e-27 111
Msa1133750 AT5G22790.1 34.498 229 131 7 113 324 207 433 1.56e-26 109
Msa1133750 AT3G56140.2 27.839 273 169 8 109 354 255 526 6.87e-21 94.4
Msa1133750 AT3G56140.1 27.839 273 169 8 109 354 474 745 1.41e-20 93.6
Msa1133750 AT3G56140.3 27.839 273 169 8 109 354 474 745 1.41e-20 93.6
Msa1133750 AT2G40400.2 28.270 237 149 6 109 325 465 700 2.08e-19 90.1
Msa1133750 AT2G40400.1 28.270 237 149 6 109 325 465 700 2.08e-19 90.1
Msa1133750 AT2G40400.3 27.273 187 118 4 109 278 465 650 3.48e-14 74.3
Msa1133750 AT2G37860.2 33.544 158 89 7 100 242 191 347 5.94e-14 72.4
Msa1133750 AT2G37860.1 33.544 158 89 7 100 242 191 347 5.94e-14 72.4

Find 121 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTTGGTGTCTCAAAATT+TGG 0.158296 7_3:-87490782 None:intergenic
TATGGCCATGTATTGGATTT+TGG 0.160598 7_3:+87491330 Msa1133750:three_prime_UTR
AAATCAAAAGATTCGTCTTT+TGG 0.178684 7_3:+87490332 Msa1133750:CDS
GGATATTTGGTACAAAATTT+TGG 0.195386 7_3:+87491249 Msa1133750:three_prime_UTR
TCTCACTTGGGCTGCTCATA+TGG 0.219592 7_3:+87490829 Msa1133750:CDS
GGTGTTACTGCTTGTGTCTT+AGG 0.224033 7_3:+87490443 Msa1133750:CDS
GTAGATTGAGATGGGATATT+TGG 0.235033 7_3:+87491236 Msa1133750:three_prime_UTR
TGCTTGTGTCTTAGGTGATA+TGG 0.238811 7_3:+87490451 Msa1133750:CDS
ATTGTGCAACATCAATAATT+TGG 0.249725 7_3:+87491536 Msa1133750:three_prime_UTR
ATGGCTTCAAGGCCTAATTT+TGG 0.265088 7_3:+87490470 Msa1133750:CDS
AGGAGTGGTGGAGGTGGTGG+TGG 0.265858 7_3:+87490263 Msa1133750:CDS
CTTAGGTACCAAACACTAAA+TGG 0.273009 7_3:+87490866 Msa1133750:CDS
CTACTCAAATGAAAATGTTT+TGG 0.284586 7_3:+87491364 Msa1133750:three_prime_UTR
GGGTTTGGTGCTGGTCTTGC+TGG 0.288595 7_3:+87490713 Msa1133750:CDS
AAGGGAAAGGGAGGAGGCTT+TGG 0.288917 7_3:+87491072 Msa1133750:CDS
TGATCCACAGTTTCCTTTCA+AGG 0.295775 7_3:+87490400 Msa1133750:CDS
GTGGTGGTGGAAGTGAAAAT+TGG 0.309300 7_3:+87490279 Msa1133750:CDS
GATTAAGATGAGGAAGAAAA+TGG 0.310266 7_3:+87490757 Msa1133750:CDS
TTCACTTTGTTGATGTTGTT+TGG 0.316535 7_3:-87491105 None:intergenic
AGTTCATTCAAACCAAAATT+AGG 0.316870 7_3:-87490482 None:intergenic
AGTCCTCGGTGTTGGTGCTT+AGG 0.330475 7_3:+87490933 Msa1133750:CDS
TTTCACACTTATGTATCTAT+TGG 0.333696 7_3:+87490547 Msa1133750:CDS
AATTTGTCACCTTATTGTTC+AGG 0.334409 7_3:-87491305 None:intergenic
CTTTACTCAATTCTCTCACT+TGG 0.338283 7_3:+87490816 Msa1133750:CDS
CTCACTTGGGCTGCTCATAT+GGG 0.340036 7_3:+87490830 Msa1133750:CDS
AGTGGTGGAGGTGGTGGTGG+TGG 0.340666 7_3:+87490266 Msa1133750:CDS
AAAGTATCACATATCTAGTT+TGG 0.346528 7_3:+87491471 Msa1133750:three_prime_UTR
AGGGTTGTGAACAATGTTCT+TGG 0.363107 7_3:+87490953 Msa1133750:CDS
GGCTCAAACATGTGACTCTT+AGG 0.367133 7_3:-87490623 None:intergenic
GTCCTCGGTGTTGGTGCTTA+GGG 0.370179 7_3:+87490934 Msa1133750:CDS
TATCTATTGGCACCAACATT+AGG 0.370401 7_3:+87490560 Msa1133750:CDS
TTAGGTACTTTGGTGTATAA+AGG 0.371386 7_3:+87490671 Msa1133750:CDS
TGGTGGTGGAAGTGAAAATT+GGG 0.371524 7_3:+87490280 Msa1133750:CDS
GGTAGGAGTGGTGGAGGTGG+TGG 0.373035 7_3:+87490260 Msa1133750:CDS
GCTGCTGTTGGGTTTGGTGC+TGG 0.378702 7_3:+87490704 Msa1133750:CDS
TGGGTTTCAGCAGTAATCTT+AGG 0.384948 7_3:+87490849 Msa1133750:CDS
AAATTAGTATGGCCATGTAT+TGG 0.386332 7_3:+87491323 Msa1133750:three_prime_UTR
AAATTACGACCTGAACAATA+AGG 0.386891 7_3:+87491296 Msa1133750:three_prime_UTR
ATTGGATAGGTTAGGTACTT+TGG 0.391020 7_3:+87490661 Msa1133750:CDS
ACTCAGCACCATTTAGTGTT+TGG 0.392898 7_3:-87490874 None:intergenic
TTGACAGGGTCACAGAGTTC+TGG 0.398819 7_3:+87491004 Msa1133750:CDS
ACTCACCTATCCAACAATAT+TGG 0.399312 7_3:-87491164 None:intergenic
ATAGCTTTGACCAATATTGT+TGG 0.399803 7_3:+87491154 Msa1133750:three_prime_UTR
CACAGATCAAATGTCAACTA+TGG 0.404843 7_3:+87490046 Msa1133750:intron
AATAAGGTGACAAATTAGTA+TGG 0.405338 7_3:+87491312 Msa1133750:three_prime_UTR
ACATATCTAGTTTGGAGTAT+TGG 0.405801 7_3:+87491479 Msa1133750:three_prime_UTR
GCTGGTACAGCACTTTCAAA+TGG 0.406836 7_3:+87490731 Msa1133750:CDS
TTTCAACCTTTGAGGCAAAT+GGG 0.407646 7_3:-87490189 None:intergenic
AAAGTAGGTGGAGCTTTGTT+TGG 0.417477 7_3:-87490797 None:intergenic
TTCATTTGAGTAGGTGGTGG+GGG 0.430102 7_3:-87491354 None:intergenic
TTCTGAATGGATGGAGATCA+AGG 0.437567 7_3:+87490369 Msa1133750:CDS
AGTGGTAGGAGTGGTGGAGG+TGG 0.438626 7_3:+87490257 Msa1133750:CDS
GGACAAGATGCAAAGATTGC+AGG 0.441836 7_3:-87490602 None:intergenic
GGTTGAAAGGGAAAGGGAGG+AGG 0.442157 7_3:+87491066 Msa1133750:CDS
TTGAGAAGGTTGAAAGGGAA+AGG 0.445930 7_3:+87491059 Msa1133750:CDS
TCTTAGGTGATATGGCTTCA+AGG 0.452850 7_3:+87490459 Msa1133750:CDS
AGGCAAATGGGGTGATGGGT+TGG 0.454846 7_3:-87490177 None:intergenic
ATTTCATTTGTCGGAGGTGA+TGG 0.455661 7_3:+87490212 Msa1133750:CDS
TTTAGTTTATTGGATAGGTT+AGG 0.459730 7_3:+87490653 Msa1133750:CDS
GTGAGAGAATTGAGTAAAGT+AGG 0.460473 7_3:-87490812 None:intergenic
TTTGACCAATATTGTTGGAT+AGG 0.460487 7_3:+87491159 Msa1133750:three_prime_UTR
CTGGTACAGCACTTTCAAAT+GGG 0.460536 7_3:+87490732 Msa1133750:CDS
AGTGGTAGTGGTAGGAGTGG+TGG 0.460912 7_3:+87490251 Msa1133750:CDS
GGTAGTGGTAGGAGTGGTGG+AGG 0.467310 7_3:+87490254 Msa1133750:CDS
TCCTTTAGCATTCAAGTCCT+CGG 0.468351 7_3:+87490919 Msa1133750:CDS
TGGTGAGAAGCCATCACAAT+TGG 0.468522 7_3:+87491024 Msa1133750:CDS
TGAGAAGGTTGAAAGGGAAA+GGG 0.469805 7_3:+87491060 Msa1133750:CDS
AGGTTGAAAATTTCATTTGT+CGG 0.472233 7_3:+87490203 Msa1133750:CDS
GGAGGTGATGGTGTTGGAAG+TGG 0.472567 7_3:+87490224 Msa1133750:CDS
GGTGTTGGAAGTGGTGGTAG+TGG 0.474532 7_3:+87490233 Msa1133750:CDS
CATCACCCCATTTGCCTCAA+AGG 0.475084 7_3:+87490183 Msa1133750:CDS
CTTTGAGGCAAATGGGGTGA+TGG 0.480889 7_3:-87490182 None:intergenic
AGTATTGGCTAAATAAAATC+AGG 0.483719 7_3:+87491494 Msa1133750:three_prime_UTR
GCTAATAATGATAATGATGA+TGG 0.498198 7_3:+87490308 Msa1133750:CDS
GCAGCAACAAATAAGAATGA+AGG 0.501919 7_3:+87491213 Msa1133750:three_prime_UTR
TTTACTCAATTCTCTCACTT+GGG 0.504007 7_3:+87490817 Msa1133750:CDS
GATTAGTTGAGAAGGTTGAA+AGG 0.504478 7_3:+87491053 Msa1133750:CDS
GGAAGTGGTGGTAGTGGTAG+TGG 0.504685 7_3:+87490239 Msa1133750:CDS
AGCATTCAAGTCCTCGGTGT+TGG 0.506923 7_3:+87490925 Msa1133750:CDS
AGATAATAATGGTCTAGAAA+AGG 0.508402 7_3:-87491443 None:intergenic
TCTTCCATCAAAACCTTGAA+AGG 0.510674 7_3:-87490413 None:intergenic
GAATGAAGGGTAGATTGAGA+TGG 0.517733 7_3:+87491227 Msa1133750:three_prime_UTR
TTTCATTTGAGTAGGTGGTG+GGG 0.520107 7_3:-87491355 None:intergenic
AATGAAGGGTAGATTGAGAT+GGG 0.520611 7_3:+87491228 Msa1133750:three_prime_UTR
GGAGGATGGATTAGTTGAGA+AGG 0.522393 7_3:+87491045 Msa1133750:CDS
CGGTTATTTAACTGTGGAGG+TGG 0.526642 7_3:-87490137 None:intergenic
TGGGTCTGTTTCTGAATGGA+TGG 0.532651 7_3:+87490360 Msa1133750:CDS
AAGAGTCACATGTTTGAGCC+TGG 0.535287 7_3:+87490626 Msa1133750:CDS
ACCGAGGACTTGAATGCTAA+AGG 0.535657 7_3:-87490920 None:intergenic
TGAGAAGCCATCACAATTGG+AGG 0.536920 7_3:+87491027 Msa1133750:CDS
ATTAGTTGAGAAGGTTGAAA+GGG 0.539886 7_3:+87491054 Msa1133750:CDS
GAAGGTTGAAAGGGAAAGGG+AGG 0.545788 7_3:+87491063 Msa1133750:CDS
GCAGAAGAAGCTCCTAATGT+TGG 0.549484 7_3:-87490572 None:intergenic
TTTAACTGTGGAGGTGGTGA+TGG 0.550712 7_3:-87490131 None:intergenic
GGTGGTGATGGTAATGATGA+TGG 0.550866 7_3:-87490119 None:intergenic
TGGTGAGATATATAGAAGTA+CGG 0.554630 7_3:-87490157 None:intergenic
TTTGAGGCAAATGGGGTGAT+GGG 0.555890 7_3:-87490181 None:intergenic
GGTGATGGTGTTGGAAGTGG+TGG 0.556383 7_3:+87490227 Msa1133750:CDS
AGAGAATTGAGTAAAGTAGG+TGG 0.556420 7_3:-87490809 None:intergenic
GTTGTGAACAATGTTCTTGG+AGG 0.557461 7_3:+87490956 Msa1133750:CDS
TCCAATAAACTAAAAGCACC+AGG 0.562983 7_3:-87490644 None:intergenic
TTGAAAATTTCATTTGTCGG+AGG 0.564054 7_3:+87490206 Msa1133750:CDS
CAGCAACAAATAAGAATGAA+GGG 0.573555 7_3:+87491214 Msa1133750:three_prime_UTR
TTTGTCGGAGGTGATGGTGT+TGG 0.574457 7_3:+87490218 Msa1133750:CDS
TTCAACCTTTGAGGCAAATG+GGG 0.575584 7_3:-87490188 None:intergenic
AAATGGTGCTGAGTTTGTGT+TGG 0.577853 7_3:+87490883 Msa1133750:CDS
GTGGTGGTAGTGGTAGTGGT+AGG 0.581739 7_3:+87490243 Msa1133750:CDS
GCACGGCTTTGACCAGATGA+AGG 0.588877 7_3:-87490086 None:intergenic
GGGGTCCAAAATCCAATACA+TGG 0.592012 7_3:-87491335 None:intergenic
AATCCATCCTCCAATTGTGA+TGG 0.593843 7_3:-87491034 None:intergenic
CAAATGGGTTGATTAAGATG+AGG 0.597867 7_3:+87490747 Msa1133750:CDS
AAGCCATCACAATTGGAGGA+TGG 0.611487 7_3:+87491031 Msa1133750:CDS
GGTAGTGGTAGTGGTAGGAG+TGG 0.629951 7_3:+87490248 Msa1133750:CDS
GAAGTACGGTTATTTAACTG+TGG 0.640467 7_3:-87490143 None:intergenic
GTACGGTTATTTAACTGTGG+AGG 0.641560 7_3:-87490140 None:intergenic
AAAACCTTGAAAGGAAACTG+TGG 0.648612 7_3:-87490404 None:intergenic
GGTGGAAGTGAAAATTGGGG+TGG 0.659226 7_3:+87490284 Msa1133750:CDS
ATGATGGAAATGAAAGTGCA+CGG 0.675516 7_3:-87490103 None:intergenic
TCTGAATGGATGGAGATCAA+GGG 0.679128 7_3:+87490370 Msa1133750:CDS
GGTGGTGGAAGTGAAAATTG+GGG 0.698233 7_3:+87490281 Msa1133750:CDS
AACCCTAAGCACCAACACCG+AGG 0.721627 7_3:-87490936 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTTTCTTCTAATTTT+TGG + chr7_3:87489841-87489860 Msa1133750:intron 15.0%
!!! TACTTTTACAAAGATAATAA+TGG - chr7_3:87491457-87491476 None:intergenic 15.0%
!!! TGTTTTTTTCTTCTAATTTT+TGG + chr7_3:87489841-87489860 Msa1133750:intron 15.0%
!!! TACTTTTACAAAGATAATAA+TGG - chr7_3:87491457-87491476 None:intergenic 15.0%
!!! TTTAGTTTTTCTGAATTTTC+TGG + chr7_3:87491191-87491210 Msa1133750:three_prime_UTR 20.0%
!!! AAATGAAAATGTTTTGGTTT+TGG + chr7_3:87491370-87491389 Msa1133750:three_prime_UTR 20.0%
!!! TTTAGTTTTTCTGAATTTTC+TGG + chr7_3:87491191-87491210 Msa1133750:three_prime_UTR 20.0%
!!! AAATGAAAATGTTTTGGTTT+TGG + chr7_3:87491370-87491389 Msa1133750:three_prime_UTR 20.0%
!!! TGTTTTTCAGAGAAAGAATT+AGG - chr7_3:87489609-87489628 None:intergenic 25.0%
!! AATGAAATTTTCAACCTTTG+AGG - chr7_3:87490200-87490219 None:intergenic 25.0%
! AGGTTGAAAATTTCATTTGT+CGG + chr7_3:87490203-87490222 Msa1133750:CDS 25.0%
!! GCTAATAATGATAATGATGA+TGG + chr7_3:87490308-87490327 Msa1133750:CDS 25.0%
!! AAATCAAAAGATTCGTCTTT+TGG + chr7_3:87490332-87490351 Msa1133750:CDS 25.0%
!! AATCAAAAGATTCGTCTTTT+GGG + chr7_3:87490333-87490352 Msa1133750:CDS 25.0%
! AGTTCATTCAAACCAAAATT+AGG - chr7_3:87490485-87490504 None:intergenic 25.0%
! TTTCACACTTATGTATCTAT+TGG + chr7_3:87490547-87490566 Msa1133750:CDS 25.0%
!! TTTAGTTTATTGGATAGGTT+AGG + chr7_3:87490653-87490672 Msa1133750:CDS 25.0%
!! GGATATTTGGTACAAAATTT+TGG + chr7_3:87491249-87491268 Msa1133750:three_prime_UTR 25.0%
! AATAAGGTGACAAATTAGTA+TGG + chr7_3:87491312-87491331 Msa1133750:three_prime_UTR 25.0%
!! CAAAACATTTTCATTTGAGT+AGG - chr7_3:87491366-87491385 None:intergenic 25.0%
!! CTACTCAAATGAAAATGTTT+TGG + chr7_3:87491364-87491383 Msa1133750:three_prime_UTR 25.0%
!!! TTTGTTTCTTTTCTATCAGT+AGG + chr7_3:87491410-87491429 Msa1133750:three_prime_UTR 25.0%
! AGATAATAATGGTCTAGAAA+AGG - chr7_3:87491446-87491465 None:intergenic 25.0%
!! AAAGTATCACATATCTAGTT+TGG + chr7_3:87491471-87491490 Msa1133750:three_prime_UTR 25.0%
!!! AGTATTGGCTAAATAAAATC+AGG + chr7_3:87491494-87491513 Msa1133750:three_prime_UTR 25.0%
! ATTGTGCAACATCAATAATT+TGG + chr7_3:87491536-87491555 Msa1133750:three_prime_UTR 25.0%
!!! TGTTTTTCAGAGAAAGAATT+AGG - chr7_3:87489609-87489628 None:intergenic 25.0%
!! AATGAAATTTTCAACCTTTG+AGG - chr7_3:87490200-87490219 None:intergenic 25.0%
! AGGTTGAAAATTTCATTTGT+CGG + chr7_3:87490203-87490222 Msa1133750:CDS 25.0%
!! GCTAATAATGATAATGATGA+TGG + chr7_3:87490308-87490327 Msa1133750:CDS 25.0%
!! AAATCAAAAGATTCGTCTTT+TGG + chr7_3:87490332-87490351 Msa1133750:CDS 25.0%
!! AATCAAAAGATTCGTCTTTT+GGG + chr7_3:87490333-87490352 Msa1133750:CDS 25.0%
! AGTTCATTCAAACCAAAATT+AGG - chr7_3:87490485-87490504 None:intergenic 25.0%
! TTTCACACTTATGTATCTAT+TGG + chr7_3:87490547-87490566 Msa1133750:CDS 25.0%
!! TTTAGTTTATTGGATAGGTT+AGG + chr7_3:87490653-87490672 Msa1133750:CDS 25.0%
!! GGATATTTGGTACAAAATTT+TGG + chr7_3:87491249-87491268 Msa1133750:three_prime_UTR 25.0%
! AATAAGGTGACAAATTAGTA+TGG + chr7_3:87491312-87491331 Msa1133750:three_prime_UTR 25.0%
!! CAAAACATTTTCATTTGAGT+AGG - chr7_3:87491366-87491385 None:intergenic 25.0%
!! CTACTCAAATGAAAATGTTT+TGG + chr7_3:87491364-87491383 Msa1133750:three_prime_UTR 25.0%
!!! TTTGTTTCTTTTCTATCAGT+AGG + chr7_3:87491410-87491429 Msa1133750:three_prime_UTR 25.0%
! AGATAATAATGGTCTAGAAA+AGG - chr7_3:87491446-87491465 None:intergenic 25.0%
!! AAAGTATCACATATCTAGTT+TGG + chr7_3:87491471-87491490 Msa1133750:three_prime_UTR 25.0%
!!! AGTATTGGCTAAATAAAATC+AGG + chr7_3:87491494-87491513 Msa1133750:three_prime_UTR 25.0%
! ATTGTGCAACATCAATAATT+TGG + chr7_3:87491536-87491555 Msa1133750:three_prime_UTR 25.0%
! ATCAGATTTTTGTGATTACC+TGG - chr7_3:87489700-87489719 None:intergenic 30.0%
TGGTGAGATATATAGAAGTA+CGG - chr7_3:87490160-87490179 None:intergenic 30.0%
TTGAAAATTTCATTTGTCGG+AGG + chr7_3:87490206-87490225 Msa1133750:CDS 30.0%
!!! GTGCTTTTAGTTTATTGGAT+AGG + chr7_3:87490648-87490667 Msa1133750:CDS 30.0%
! TTAGGTACTTTGGTGTATAA+AGG + chr7_3:87490671-87490690 Msa1133750:CDS 30.0%
GATTAAGATGAGGAAGAAAA+TGG + chr7_3:87490757-87490776 Msa1133750:CDS 30.0%
!! TTGTTTGGTGTCTCAAAATT+TGG - chr7_3:87490785-87490804 None:intergenic 30.0%
TTTACTCAATTCTCTCACTT+GGG + chr7_3:87490817-87490836 Msa1133750:CDS 30.0%
ATTAGTTGAGAAGGTTGAAA+GGG + chr7_3:87491054-87491073 Msa1133750:CDS 30.0%
TTCACTTTGTTGATGTTGTT+TGG - chr7_3:87491108-87491127 None:intergenic 30.0%
!! ATAGCTTTGACCAATATTGT+TGG + chr7_3:87491154-87491173 Msa1133750:three_prime_UTR 30.0%
TTTGACCAATATTGTTGGAT+AGG + chr7_3:87491159-87491178 Msa1133750:three_prime_UTR 30.0%
CAGCAACAAATAAGAATGAA+GGG + chr7_3:87491214-87491233 Msa1133750:three_prime_UTR 30.0%
!! ATTTGGTACAAAATTTTGGC+AGG + chr7_3:87491253-87491272 Msa1133750:three_prime_UTR 30.0%
!! AAAATTTTGGCAGGTTTTGA+TGG + chr7_3:87491262-87491281 Msa1133750:three_prime_UTR 30.0%
AAATTACGACCTGAACAATA+AGG + chr7_3:87491296-87491315 Msa1133750:three_prime_UTR 30.0%
AATTTGTCACCTTATTGTTC+AGG - chr7_3:87491308-87491327 None:intergenic 30.0%
AAATTAGTATGGCCATGTAT+TGG + chr7_3:87491323-87491342 Msa1133750:three_prime_UTR 30.0%
! AACATTTTCATTTGAGTAGG+TGG - chr7_3:87491363-87491382 None:intergenic 30.0%
! ACATATCTAGTTTGGAGTAT+TGG + chr7_3:87491479-87491498 Msa1133750:three_prime_UTR 30.0%
! ATCAGATTTTTGTGATTACC+TGG - chr7_3:87489700-87489719 None:intergenic 30.0%
TGGTGAGATATATAGAAGTA+CGG - chr7_3:87490160-87490179 None:intergenic 30.0%
TTGAAAATTTCATTTGTCGG+AGG + chr7_3:87490206-87490225 Msa1133750:CDS 30.0%
!!! GTGCTTTTAGTTTATTGGAT+AGG + chr7_3:87490648-87490667 Msa1133750:CDS 30.0%
! TTAGGTACTTTGGTGTATAA+AGG + chr7_3:87490671-87490690 Msa1133750:CDS 30.0%
GATTAAGATGAGGAAGAAAA+TGG + chr7_3:87490757-87490776 Msa1133750:CDS 30.0%
!! TTGTTTGGTGTCTCAAAATT+TGG - chr7_3:87490785-87490804 None:intergenic 30.0%
TTTACTCAATTCTCTCACTT+GGG + chr7_3:87490817-87490836 Msa1133750:CDS 30.0%
ATTAGTTGAGAAGGTTGAAA+GGG + chr7_3:87491054-87491073 Msa1133750:CDS 30.0%
TTCACTTTGTTGATGTTGTT+TGG - chr7_3:87491108-87491127 None:intergenic 30.0%
!! ATAGCTTTGACCAATATTGT+TGG + chr7_3:87491154-87491173 Msa1133750:three_prime_UTR 30.0%
TTTGACCAATATTGTTGGAT+AGG + chr7_3:87491159-87491178 Msa1133750:three_prime_UTR 30.0%
CAGCAACAAATAAGAATGAA+GGG + chr7_3:87491214-87491233 Msa1133750:three_prime_UTR 30.0%
!! ATTTGGTACAAAATTTTGGC+AGG + chr7_3:87491253-87491272 Msa1133750:three_prime_UTR 30.0%
!! AAAATTTTGGCAGGTTTTGA+TGG + chr7_3:87491262-87491281 Msa1133750:three_prime_UTR 30.0%
AAATTACGACCTGAACAATA+AGG + chr7_3:87491296-87491315 Msa1133750:three_prime_UTR 30.0%
AATTTGTCACCTTATTGTTC+AGG - chr7_3:87491308-87491327 None:intergenic 30.0%
AAATTAGTATGGCCATGTAT+TGG + chr7_3:87491323-87491342 Msa1133750:three_prime_UTR 30.0%
! AACATTTTCATTTGAGTAGG+TGG - chr7_3:87491363-87491382 None:intergenic 30.0%
! ACATATCTAGTTTGGAGTAT+TGG + chr7_3:87491479-87491498 Msa1133750:three_prime_UTR 30.0%
AACCTCAAACTGTAATGTTG+CGG - chr7_3:87489639-87489658 None:intergenic 35.0%
! TTTTTGTGATTACCTGGATC+TGG - chr7_3:87489694-87489713 None:intergenic 35.0%
CACAGATCAAATGTCAACTA+TGG + chr7_3:87490046-87490065 Msa1133750:intron 35.0%
! ATGATGGAAATGAAAGTGCA+CGG - chr7_3:87490106-87490125 None:intergenic 35.0%
GAAGTACGGTTATTTAACTG+TGG - chr7_3:87490146-87490165 None:intergenic 35.0%
!! TTTCAACCTTTGAGGCAAAT+GGG - chr7_3:87490192-87490211 None:intergenic 35.0%
!!! TTTTCAACCTTTGAGGCAAA+TGG - chr7_3:87490193-87490212 None:intergenic 35.0%
!!! AGATTCGTCTTTTGGGATTT+TGG + chr7_3:87490340-87490359 Msa1133750:CDS 35.0%
!!! GATTCGTCTTTTGGGATTTT+GGG + chr7_3:87490341-87490360 Msa1133750:CDS 35.0%
!!! ATTTTGGGTCTGTTTCTGAA+TGG + chr7_3:87490356-87490375 Msa1133750:CDS 35.0%
AAAACCTTGAAAGGAAACTG+TGG - chr7_3:87490407-87490426 None:intergenic 35.0%
!! GTTTCCTTTCAAGGTTTTGA+TGG + chr7_3:87490409-87490428 Msa1133750:CDS 35.0%
TCTTCCATCAAAACCTTGAA+AGG - chr7_3:87490416-87490435 None:intergenic 35.0%
!! GTGTTTTCAACTCTTGTTGT+TGG + chr7_3:87490512-87490531 Msa1133750:CDS 35.0%
TATCTATTGGCACCAACATT+AGG + chr7_3:87490560-87490579 Msa1133750:CDS 35.0%
!! TCCAATAAACTAAAAGCACC+AGG - chr7_3:87490647-87490666 None:intergenic 35.0%
ATTGGATAGGTTAGGTACTT+TGG + chr7_3:87490661-87490680 Msa1133750:CDS 35.0%
!! CAAATGGGTTGATTAAGATG+AGG + chr7_3:87490747-87490766 Msa1133750:CDS 35.0%
AGAGAATTGAGTAAAGTAGG+TGG - chr7_3:87490812-87490831 None:intergenic 35.0%
GTGAGAGAATTGAGTAAAGT+AGG - chr7_3:87490815-87490834 None:intergenic 35.0%
CTTTACTCAATTCTCTCACT+TGG + chr7_3:87490816-87490835 Msa1133750:CDS 35.0%
CTTAGGTACCAAACACTAAA+TGG + chr7_3:87490866-87490885 Msa1133750:CDS 35.0%
! AGGAATGTCTTTTGTGGTTT+TGG + chr7_3:87490976-87490995 Msa1133750:CDS 35.0%
! GATTAGTTGAGAAGGTTGAA+AGG + chr7_3:87491053-87491072 Msa1133750:CDS 35.0%
ACTCACCTATCCAACAATAT+TGG - chr7_3:87491167-87491186 None:intergenic 35.0%
GCAGCAACAAATAAGAATGA+AGG + chr7_3:87491213-87491232 Msa1133750:three_prime_UTR 35.0%
AATGAAGGGTAGATTGAGAT+GGG + chr7_3:87491228-87491247 Msa1133750:three_prime_UTR 35.0%
GTAGATTGAGATGGGATATT+TGG + chr7_3:87491236-87491255 Msa1133750:three_prime_UTR 35.0%
! TATGGCCATGTATTGGATTT+TGG + chr7_3:87491330-87491349 Msa1133750:three_prime_UTR 35.0%
! TTTTCATTTGAGTAGGTGGT+GGG - chr7_3:87491359-87491378 None:intergenic 35.0%
! ATTTTCATTTGAGTAGGTGG+TGG - chr7_3:87491360-87491379 None:intergenic 35.0%
AACCTCAAACTGTAATGTTG+CGG - chr7_3:87489639-87489658 None:intergenic 35.0%
! TTTTTGTGATTACCTGGATC+TGG - chr7_3:87489694-87489713 None:intergenic 35.0%
CACAGATCAAATGTCAACTA+TGG + chr7_3:87490046-87490065 Msa1133750:intron 35.0%
! ATGATGGAAATGAAAGTGCA+CGG - chr7_3:87490106-87490125 None:intergenic 35.0%
GAAGTACGGTTATTTAACTG+TGG - chr7_3:87490146-87490165 None:intergenic 35.0%
!! TTTCAACCTTTGAGGCAAAT+GGG - chr7_3:87490192-87490211 None:intergenic 35.0%
!!! TTTTCAACCTTTGAGGCAAA+TGG - chr7_3:87490193-87490212 None:intergenic 35.0%
!!! AGATTCGTCTTTTGGGATTT+TGG + chr7_3:87490340-87490359 Msa1133750:CDS 35.0%
!!! GATTCGTCTTTTGGGATTTT+GGG + chr7_3:87490341-87490360 Msa1133750:CDS 35.0%
!!! ATTTTGGGTCTGTTTCTGAA+TGG + chr7_3:87490356-87490375 Msa1133750:CDS 35.0%
AAAACCTTGAAAGGAAACTG+TGG - chr7_3:87490407-87490426 None:intergenic 35.0%
!! GTTTCCTTTCAAGGTTTTGA+TGG + chr7_3:87490409-87490428 Msa1133750:CDS 35.0%
TCTTCCATCAAAACCTTGAA+AGG - chr7_3:87490416-87490435 None:intergenic 35.0%
!! GTGTTTTCAACTCTTGTTGT+TGG + chr7_3:87490512-87490531 Msa1133750:CDS 35.0%
TATCTATTGGCACCAACATT+AGG + chr7_3:87490560-87490579 Msa1133750:CDS 35.0%
!! TCCAATAAACTAAAAGCACC+AGG - chr7_3:87490647-87490666 None:intergenic 35.0%
ATTGGATAGGTTAGGTACTT+TGG + chr7_3:87490661-87490680 Msa1133750:CDS 35.0%
!! CAAATGGGTTGATTAAGATG+AGG + chr7_3:87490747-87490766 Msa1133750:CDS 35.0%
AGAGAATTGAGTAAAGTAGG+TGG - chr7_3:87490812-87490831 None:intergenic 35.0%
GTGAGAGAATTGAGTAAAGT+AGG - chr7_3:87490815-87490834 None:intergenic 35.0%
CTTTACTCAATTCTCTCACT+TGG + chr7_3:87490816-87490835 Msa1133750:CDS 35.0%
CTTAGGTACCAAACACTAAA+TGG + chr7_3:87490866-87490885 Msa1133750:CDS 35.0%
! AGGAATGTCTTTTGTGGTTT+TGG + chr7_3:87490976-87490995 Msa1133750:CDS 35.0%
! GATTAGTTGAGAAGGTTGAA+AGG + chr7_3:87491053-87491072 Msa1133750:CDS 35.0%
ACTCACCTATCCAACAATAT+TGG - chr7_3:87491167-87491186 None:intergenic 35.0%
GCAGCAACAAATAAGAATGA+AGG + chr7_3:87491213-87491232 Msa1133750:three_prime_UTR 35.0%
AATGAAGGGTAGATTGAGAT+GGG + chr7_3:87491228-87491247 Msa1133750:three_prime_UTR 35.0%
GTAGATTGAGATGGGATATT+TGG + chr7_3:87491236-87491255 Msa1133750:three_prime_UTR 35.0%
! TATGGCCATGTATTGGATTT+TGG + chr7_3:87491330-87491349 Msa1133750:three_prime_UTR 35.0%
! TTTTCATTTGAGTAGGTGGT+GGG - chr7_3:87491359-87491378 None:intergenic 35.0%
! ATTTTCATTTGAGTAGGTGG+TGG - chr7_3:87491360-87491379 None:intergenic 35.0%
AGAATTAGGAGAGAGTGAGT+TGG - chr7_3:87489595-87489614 None:intergenic 40.0%
GCTTGAAAGATTCTCAGCAA+TGG - chr7_3:87489779-87489798 None:intergenic 40.0%
GTACGGTTATTTAACTGTGG+AGG - chr7_3:87490143-87490162 None:intergenic 40.0%
!! TTCAACCTTTGAGGCAAATG+GGG - chr7_3:87490191-87490210 None:intergenic 40.0%
ATTTCATTTGTCGGAGGTGA+TGG + chr7_3:87490212-87490231 Msa1133750:CDS 40.0%
!! TGGTGGTGGAAGTGAAAATT+GGG + chr7_3:87490280-87490299 Msa1133750:CDS 40.0%
TTCTGAATGGATGGAGATCA+AGG + chr7_3:87490369-87490388 Msa1133750:CDS 40.0%
TCTGAATGGATGGAGATCAA+GGG + chr7_3:87490370-87490389 Msa1133750:CDS 40.0%
TGATCCACAGTTTCCTTTCA+AGG + chr7_3:87490400-87490419 Msa1133750:CDS 40.0%
!! CAAGGTTTTGATGGAAGAGT+TGG + chr7_3:87490418-87490437 Msa1133750:CDS 40.0%
!! GTTTTGATGGAAGAGTTGGT+TGG + chr7_3:87490422-87490441 Msa1133750:CDS 40.0%
TGCTTGTGTCTTAGGTGATA+TGG + chr7_3:87490451-87490470 Msa1133750:CDS 40.0%
TCTTAGGTGATATGGCTTCA+AGG + chr7_3:87490459-87490478 Msa1133750:CDS 40.0%
! ATGGCTTCAAGGCCTAATTT+TGG + chr7_3:87490470-87490489 Msa1133750:CDS 40.0%
!!! GCCTGGTGCTTTTAGTTTAT+TGG + chr7_3:87490643-87490662 Msa1133750:CDS 40.0%
!! GTACCATTTTTGCTGCTGTT+GGG + chr7_3:87490693-87490712 Msa1133750:CDS 40.0%
AAACCCAACAGCAGCAAAAA+TGG - chr7_3:87490699-87490718 None:intergenic 40.0%
! ATTTTTGCTGCTGTTGGGTT+TGG + chr7_3:87490698-87490717 Msa1133750:CDS 40.0%
CTGGTACAGCACTTTCAAAT+GGG + chr7_3:87490732-87490751 Msa1133750:CDS 40.0%
!! AAAGTAGGTGGAGCTTTGTT+TGG - chr7_3:87490800-87490819 None:intergenic 40.0%
TGGGTTTCAGCAGTAATCTT+AGG + chr7_3:87490849-87490868 Msa1133750:CDS 40.0%
ACTCAGCACCATTTAGTGTT+TGG - chr7_3:87490877-87490896 None:intergenic 40.0%
! AAATGGTGCTGAGTTTGTGT+TGG + chr7_3:87490883-87490902 Msa1133750:CDS 40.0%
TCCTTTAGCATTCAAGTCCT+CGG + chr7_3:87490919-87490938 Msa1133750:CDS 40.0%
AGGGTTGTGAACAATGTTCT+TGG + chr7_3:87490953-87490972 Msa1133750:CDS 40.0%
GTTGTGAACAATGTTCTTGG+AGG + chr7_3:87490956-87490975 Msa1133750:CDS 40.0%
! TCTTGGAGGAATGTCTTTTG+TGG + chr7_3:87490970-87490989 Msa1133750:CDS 40.0%
!!! TGTCTTTTGTGGTTTTGGCA+AGG + chr7_3:87490981-87491000 Msa1133750:CDS 40.0%
AATCCATCCTCCAATTGTGA+TGG - chr7_3:87491037-87491056 None:intergenic 40.0%
TTGAGAAGGTTGAAAGGGAA+AGG + chr7_3:87491059-87491078 Msa1133750:CDS 40.0%
TGAGAAGGTTGAAAGGGAAA+GGG + chr7_3:87491060-87491079 Msa1133750:CDS 40.0%
GAATGAAGGGTAGATTGAGA+TGG + chr7_3:87491227-87491246 Msa1133750:three_prime_UTR 40.0%
TTTCATTTGAGTAGGTGGTG+GGG - chr7_3:87491358-87491377 None:intergenic 40.0%
AGAATTAGGAGAGAGTGAGT+TGG - chr7_3:87489595-87489614 None:intergenic 40.0%
GCTTGAAAGATTCTCAGCAA+TGG - chr7_3:87489779-87489798 None:intergenic 40.0%
GTACGGTTATTTAACTGTGG+AGG - chr7_3:87490143-87490162 None:intergenic 40.0%
!! TTCAACCTTTGAGGCAAATG+GGG - chr7_3:87490191-87490210 None:intergenic 40.0%
ATTTCATTTGTCGGAGGTGA+TGG + chr7_3:87490212-87490231 Msa1133750:CDS 40.0%
!! TGGTGGTGGAAGTGAAAATT+GGG + chr7_3:87490280-87490299 Msa1133750:CDS 40.0%
TTCTGAATGGATGGAGATCA+AGG + chr7_3:87490369-87490388 Msa1133750:CDS 40.0%
TCTGAATGGATGGAGATCAA+GGG + chr7_3:87490370-87490389 Msa1133750:CDS 40.0%
TGATCCACAGTTTCCTTTCA+AGG + chr7_3:87490400-87490419 Msa1133750:CDS 40.0%
!! CAAGGTTTTGATGGAAGAGT+TGG + chr7_3:87490418-87490437 Msa1133750:CDS 40.0%
!! GTTTTGATGGAAGAGTTGGT+TGG + chr7_3:87490422-87490441 Msa1133750:CDS 40.0%
TGCTTGTGTCTTAGGTGATA+TGG + chr7_3:87490451-87490470 Msa1133750:CDS 40.0%
TCTTAGGTGATATGGCTTCA+AGG + chr7_3:87490459-87490478 Msa1133750:CDS 40.0%
! ATGGCTTCAAGGCCTAATTT+TGG + chr7_3:87490470-87490489 Msa1133750:CDS 40.0%
!!! GCCTGGTGCTTTTAGTTTAT+TGG + chr7_3:87490643-87490662 Msa1133750:CDS 40.0%
!! GTACCATTTTTGCTGCTGTT+GGG + chr7_3:87490693-87490712 Msa1133750:CDS 40.0%
AAACCCAACAGCAGCAAAAA+TGG - chr7_3:87490699-87490718 None:intergenic 40.0%
! ATTTTTGCTGCTGTTGGGTT+TGG + chr7_3:87490698-87490717 Msa1133750:CDS 40.0%
CTGGTACAGCACTTTCAAAT+GGG + chr7_3:87490732-87490751 Msa1133750:CDS 40.0%
!! AAAGTAGGTGGAGCTTTGTT+TGG - chr7_3:87490800-87490819 None:intergenic 40.0%
TGGGTTTCAGCAGTAATCTT+AGG + chr7_3:87490849-87490868 Msa1133750:CDS 40.0%
ACTCAGCACCATTTAGTGTT+TGG - chr7_3:87490877-87490896 None:intergenic 40.0%
! AAATGGTGCTGAGTTTGTGT+TGG + chr7_3:87490883-87490902 Msa1133750:CDS 40.0%
TCCTTTAGCATTCAAGTCCT+CGG + chr7_3:87490919-87490938 Msa1133750:CDS 40.0%
AGGGTTGTGAACAATGTTCT+TGG + chr7_3:87490953-87490972 Msa1133750:CDS 40.0%
GTTGTGAACAATGTTCTTGG+AGG + chr7_3:87490956-87490975 Msa1133750:CDS 40.0%
! TCTTGGAGGAATGTCTTTTG+TGG + chr7_3:87490970-87490989 Msa1133750:CDS 40.0%
!!! TGTCTTTTGTGGTTTTGGCA+AGG + chr7_3:87490981-87491000 Msa1133750:CDS 40.0%
AATCCATCCTCCAATTGTGA+TGG - chr7_3:87491037-87491056 None:intergenic 40.0%
TTGAGAAGGTTGAAAGGGAA+AGG + chr7_3:87491059-87491078 Msa1133750:CDS 40.0%
TGAGAAGGTTGAAAGGGAAA+GGG + chr7_3:87491060-87491079 Msa1133750:CDS 40.0%
GAATGAAGGGTAGATTGAGA+TGG + chr7_3:87491227-87491246 Msa1133750:three_prime_UTR 40.0%
TTTCATTTGAGTAGGTGGTG+GGG - chr7_3:87491358-87491377 None:intergenic 40.0%
! ATTAGGAGAGAGTGAGTTGG+TGG - chr7_3:87489592-87489611 None:intergenic 45.0%
TGCCGCAACATTACAGTTTG+AGG + chr7_3:87489634-87489653 Msa1133750:intron 45.0%
AAACACCGTGATTCACGTAC+CGG - chr7_3:87489826-87489845 None:intergenic 45.0%
! CTGCGTTTTACACCTTCATC+TGG + chr7_3:87490074-87490093 Msa1133750:CDS 45.0%
!! GGTGGTGATGGTAATGATGA+TGG - chr7_3:87490122-87490141 None:intergenic 45.0%
TTTAACTGTGGAGGTGGTGA+TGG - chr7_3:87490134-87490153 None:intergenic 45.0%
CGGTTATTTAACTGTGGAGG+TGG - chr7_3:87490140-87490159 None:intergenic 45.0%
! TTTGAGGCAAATGGGGTGAT+GGG - chr7_3:87490184-87490203 None:intergenic 45.0%
!! GTGGTGGTGGAAGTGAAAAT+TGG + chr7_3:87490279-87490298 Msa1133750:CDS 45.0%
!! GGTGGTGGAAGTGAAAATTG+GGG + chr7_3:87490281-87490300 Msa1133750:CDS 45.0%
!! TGGGTCTGTTTCTGAATGGA+TGG + chr7_3:87490360-87490379 Msa1133750:CDS 45.0%
!! GGTGTTACTGCTTGTGTCTT+AGG + chr7_3:87490443-87490462 Msa1133750:CDS 45.0%
GCAGAAGAAGCTCCTAATGT+TGG - chr7_3:87490575-87490594 None:intergenic 45.0%
GGACAAGATGCAAAGATTGC+AGG - chr7_3:87490605-87490624 None:intergenic 45.0%
GGCTCAAACATGTGACTCTT+AGG - chr7_3:87490626-87490645 None:intergenic 45.0%
AAGAGTCACATGTTTGAGCC+TGG + chr7_3:87490626-87490645 Msa1133750:CDS 45.0%
!! GGTACCATTTTTGCTGCTGT+TGG + chr7_3:87490692-87490711 Msa1133750:CDS 45.0%
GCTGGTACAGCACTTTCAAA+TGG + chr7_3:87490731-87490750 Msa1133750:CDS 45.0%
ACCGAGGACTTGAATGCTAA+AGG - chr7_3:87490923-87490942 None:intergenic 45.0%
!!! TGGTTTTGGCAAGGTTGACA+GGG + chr7_3:87490990-87491009 Msa1133750:CDS 45.0%
TGGTGAGAAGCCATCACAAT+TGG + chr7_3:87491024-87491043 Msa1133750:CDS 45.0%
TGAGAAGCCATCACAATTGG+AGG + chr7_3:87491027-87491046 Msa1133750:CDS 45.0%
AAGCCATCACAATTGGAGGA+TGG + chr7_3:87491031-87491050 Msa1133750:CDS 45.0%
!! GGAGGATGGATTAGTTGAGA+AGG + chr7_3:87491045-87491064 Msa1133750:CDS 45.0%
GGGGTCCAAAATCCAATACA+TGG - chr7_3:87491338-87491357 None:intergenic 45.0%
! TTCATTTGAGTAGGTGGTGG+GGG - chr7_3:87491357-87491376 None:intergenic 45.0%
! ATTAGGAGAGAGTGAGTTGG+TGG - chr7_3:87489592-87489611 None:intergenic 45.0%
TGCCGCAACATTACAGTTTG+AGG + chr7_3:87489634-87489653 Msa1133750:intron 45.0%
AAACACCGTGATTCACGTAC+CGG - chr7_3:87489826-87489845 None:intergenic 45.0%
! CTGCGTTTTACACCTTCATC+TGG + chr7_3:87490074-87490093 Msa1133750:CDS 45.0%
!! GGTGGTGATGGTAATGATGA+TGG - chr7_3:87490122-87490141 None:intergenic 45.0%
TTTAACTGTGGAGGTGGTGA+TGG - chr7_3:87490134-87490153 None:intergenic 45.0%
CGGTTATTTAACTGTGGAGG+TGG - chr7_3:87490140-87490159 None:intergenic 45.0%
! TTTGAGGCAAATGGGGTGAT+GGG - chr7_3:87490184-87490203 None:intergenic 45.0%
!! GTGGTGGTGGAAGTGAAAAT+TGG + chr7_3:87490279-87490298 Msa1133750:CDS 45.0%
!! GGTGGTGGAAGTGAAAATTG+GGG + chr7_3:87490281-87490300 Msa1133750:CDS 45.0%
!! TGGGTCTGTTTCTGAATGGA+TGG + chr7_3:87490360-87490379 Msa1133750:CDS 45.0%
!! GGTGTTACTGCTTGTGTCTT+AGG + chr7_3:87490443-87490462 Msa1133750:CDS 45.0%
GCAGAAGAAGCTCCTAATGT+TGG - chr7_3:87490575-87490594 None:intergenic 45.0%
GGACAAGATGCAAAGATTGC+AGG - chr7_3:87490605-87490624 None:intergenic 45.0%
GGCTCAAACATGTGACTCTT+AGG - chr7_3:87490626-87490645 None:intergenic 45.0%
AAGAGTCACATGTTTGAGCC+TGG + chr7_3:87490626-87490645 Msa1133750:CDS 45.0%
!! GGTACCATTTTTGCTGCTGT+TGG + chr7_3:87490692-87490711 Msa1133750:CDS 45.0%
GCTGGTACAGCACTTTCAAA+TGG + chr7_3:87490731-87490750 Msa1133750:CDS 45.0%
ACCGAGGACTTGAATGCTAA+AGG - chr7_3:87490923-87490942 None:intergenic 45.0%
!!! TGGTTTTGGCAAGGTTGACA+GGG + chr7_3:87490990-87491009 Msa1133750:CDS 45.0%
TGGTGAGAAGCCATCACAAT+TGG + chr7_3:87491024-87491043 Msa1133750:CDS 45.0%
TGAGAAGCCATCACAATTGG+AGG + chr7_3:87491027-87491046 Msa1133750:CDS 45.0%
AAGCCATCACAATTGGAGGA+TGG + chr7_3:87491031-87491050 Msa1133750:CDS 45.0%
!! GGAGGATGGATTAGTTGAGA+AGG + chr7_3:87491045-87491064 Msa1133750:CDS 45.0%
GGGGTCCAAAATCCAATACA+TGG - chr7_3:87491338-87491357 None:intergenic 45.0%
! TTCATTTGAGTAGGTGGTGG+GGG - chr7_3:87491357-87491376 None:intergenic 45.0%
AAGCAACGCCGTCATGTATG+CGG + chr7_3:87489795-87489814 Msa1133750:intron 50.0%
!! CTTTGAGGCAAATGGGGTGA+TGG - chr7_3:87490185-87490204 None:intergenic 50.0%
CATCACCCCATTTGCCTCAA+AGG + chr7_3:87490183-87490202 Msa1133750:CDS 50.0%
! TTTGTCGGAGGTGATGGTGT+TGG + chr7_3:87490218-87490237 Msa1133750:CDS 50.0%
GGTGGAAGTGAAAATTGGGG+TGG + chr7_3:87490284-87490303 Msa1133750:CDS 50.0%
TCTCACTTGGGCTGCTCATA+TGG + chr7_3:87490829-87490848 Msa1133750:CDS 50.0%
CTCACTTGGGCTGCTCATAT+GGG + chr7_3:87490830-87490849 Msa1133750:CDS 50.0%
! AGCATTCAAGTCCTCGGTGT+TGG + chr7_3:87490925-87490944 Msa1133750:CDS 50.0%
!!! GTGGTTTTGGCAAGGTTGAC+AGG + chr7_3:87490989-87491008 Msa1133750:CDS 50.0%
TTGACAGGGTCACAGAGTTC+TGG + chr7_3:87491004-87491023 Msa1133750:CDS 50.0%
GAAGGTTGAAAGGGAAAGGG+AGG + chr7_3:87491063-87491082 Msa1133750:CDS 50.0%
AAGCAACGCCGTCATGTATG+CGG + chr7_3:87489795-87489814 Msa1133750:intron 50.0%
!! CTTTGAGGCAAATGGGGTGA+TGG - chr7_3:87490185-87490204 None:intergenic 50.0%
CATCACCCCATTTGCCTCAA+AGG + chr7_3:87490183-87490202 Msa1133750:CDS 50.0%
! TTTGTCGGAGGTGATGGTGT+TGG + chr7_3:87490218-87490237 Msa1133750:CDS 50.0%
GGTGGAAGTGAAAATTGGGG+TGG + chr7_3:87490284-87490303 Msa1133750:CDS 50.0%
TCTCACTTGGGCTGCTCATA+TGG + chr7_3:87490829-87490848 Msa1133750:CDS 50.0%
CTCACTTGGGCTGCTCATAT+GGG + chr7_3:87490830-87490849 Msa1133750:CDS 50.0%
! AGCATTCAAGTCCTCGGTGT+TGG + chr7_3:87490925-87490944 Msa1133750:CDS 50.0%
!!! GTGGTTTTGGCAAGGTTGAC+AGG + chr7_3:87490989-87491008 Msa1133750:CDS 50.0%
TTGACAGGGTCACAGAGTTC+TGG + chr7_3:87491004-87491023 Msa1133750:CDS 50.0%
GAAGGTTGAAAGGGAAAGGG+AGG + chr7_3:87491063-87491082 Msa1133750:CDS 50.0%
ATCTGGTGTGAGAGAGCGGA+AGG - chr7_3:87489677-87489696 None:intergenic 55.0%
CTGGATCTGGTGTGAGAGAG+CGG - chr7_3:87489681-87489700 None:intergenic 55.0%
! GCACGGCTTTGACCAGATGA+AGG - chr7_3:87490089-87490108 None:intergenic 55.0%
!! AGGCAAATGGGGTGATGGGT+TGG - chr7_3:87490180-87490199 None:intergenic 55.0%
! GGAGGTGATGGTGTTGGAAG+TGG + chr7_3:87490224-87490243 Msa1133750:CDS 55.0%
! GGTGATGGTGTTGGAAGTGG+TGG + chr7_3:87490227-87490246 Msa1133750:CDS 55.0%
! GGTGTTGGAAGTGGTGGTAG+TGG + chr7_3:87490233-87490252 Msa1133750:CDS 55.0%
!! GGAAGTGGTGGTAGTGGTAG+TGG + chr7_3:87490239-87490258 Msa1133750:CDS 55.0%
!! GTGGTGGTAGTGGTAGTGGT+AGG + chr7_3:87490243-87490262 Msa1133750:CDS 55.0%
!! GGTAGTGGTAGTGGTAGGAG+TGG + chr7_3:87490248-87490267 Msa1133750:CDS 55.0%
!! AGTGGTAGTGGTAGGAGTGG+TGG + chr7_3:87490251-87490270 Msa1133750:CDS 55.0%
!! AGTCCTCGGTGTTGGTGCTT+AGG + chr7_3:87490933-87490952 Msa1133750:CDS 55.0%
!! GTCCTCGGTGTTGGTGCTTA+GGG + chr7_3:87490934-87490953 Msa1133750:CDS 55.0%
AACCCTAAGCACCAACACCG+AGG - chr7_3:87490939-87490958 None:intergenic 55.0%
GGTTGAAAGGGAAAGGGAGG+AGG + chr7_3:87491066-87491085 Msa1133750:CDS 55.0%
AAGGGAAAGGGAGGAGGCTT+TGG + chr7_3:87491072-87491091 Msa1133750:CDS 55.0%
ATCTGGTGTGAGAGAGCGGA+AGG - chr7_3:87489677-87489696 None:intergenic 55.0%
CTGGATCTGGTGTGAGAGAG+CGG - chr7_3:87489681-87489700 None:intergenic 55.0%
! GCACGGCTTTGACCAGATGA+AGG - chr7_3:87490089-87490108 None:intergenic 55.0%
!! AGGCAAATGGGGTGATGGGT+TGG - chr7_3:87490180-87490199 None:intergenic 55.0%
! GGAGGTGATGGTGTTGGAAG+TGG + chr7_3:87490224-87490243 Msa1133750:CDS 55.0%
! GGTGATGGTGTTGGAAGTGG+TGG + chr7_3:87490227-87490246 Msa1133750:CDS 55.0%
! GGTGTTGGAAGTGGTGGTAG+TGG + chr7_3:87490233-87490252 Msa1133750:CDS 55.0%
!! GGAAGTGGTGGTAGTGGTAG+TGG + chr7_3:87490239-87490258 Msa1133750:CDS 55.0%
!! GTGGTGGTAGTGGTAGTGGT+AGG + chr7_3:87490243-87490262 Msa1133750:CDS 55.0%
!! GGTAGTGGTAGTGGTAGGAG+TGG + chr7_3:87490248-87490267 Msa1133750:CDS 55.0%
!! AGTGGTAGTGGTAGGAGTGG+TGG + chr7_3:87490251-87490270 Msa1133750:CDS 55.0%
!! AGTCCTCGGTGTTGGTGCTT+AGG + chr7_3:87490933-87490952 Msa1133750:CDS 55.0%
!! GTCCTCGGTGTTGGTGCTTA+GGG + chr7_3:87490934-87490953 Msa1133750:CDS 55.0%
AACCCTAAGCACCAACACCG+AGG - chr7_3:87490939-87490958 None:intergenic 55.0%
GGTTGAAAGGGAAAGGGAGG+AGG + chr7_3:87491066-87491085 Msa1133750:CDS 55.0%
AAGGGAAAGGGAGGAGGCTT+TGG + chr7_3:87491072-87491091 Msa1133750:CDS 55.0%
CGCTCTCTCACACCAGATCC+AGG + chr7_3:87489679-87489698 Msa1133750:intron 60.0%
CAACGCCGTCATGTATGCGG+CGG + chr7_3:87489798-87489817 Msa1133750:intron 60.0%
! GGTAGTGGTAGGAGTGGTGG+AGG + chr7_3:87490254-87490273 Msa1133750:CDS 60.0%
! AGTGGTAGGAGTGGTGGAGG+TGG + chr7_3:87490257-87490276 Msa1133750:CDS 60.0%
!! GCTGCTGTTGGGTTTGGTGC+TGG + chr7_3:87490704-87490723 Msa1133750:CDS 60.0%
!! GGGTTTGGTGCTGGTCTTGC+TGG + chr7_3:87490713-87490732 Msa1133750:CDS 60.0%
CGCTCTCTCACACCAGATCC+AGG + chr7_3:87489679-87489698 Msa1133750:intron 60.0%
CAACGCCGTCATGTATGCGG+CGG + chr7_3:87489798-87489817 Msa1133750:intron 60.0%
! GGTAGTGGTAGGAGTGGTGG+AGG + chr7_3:87490254-87490273 Msa1133750:CDS 60.0%
! AGTGGTAGGAGTGGTGGAGG+TGG + chr7_3:87490257-87490276 Msa1133750:CDS 60.0%
!! GCTGCTGTTGGGTTTGGTGC+TGG + chr7_3:87490704-87490723 Msa1133750:CDS 60.0%
!! GGGTTTGGTGCTGGTCTTGC+TGG + chr7_3:87490713-87490732 Msa1133750:CDS 60.0%
!! CGGCGCCGGTACGTGAATCA+CGG + chr7_3:87489818-87489837 Msa1133750:intron 65.0%
! GGTAGGAGTGGTGGAGGTGG+TGG + chr7_3:87490260-87490279 Msa1133750:CDS 65.0%
! AGGAGTGGTGGAGGTGGTGG+TGG + chr7_3:87490263-87490282 Msa1133750:CDS 65.0%
!! AGTGGTGGAGGTGGTGGTGG+TGG + chr7_3:87490266-87490285 Msa1133750:CDS 65.0%
!! CGGCGCCGGTACGTGAATCA+CGG + chr7_3:87489818-87489837 Msa1133750:intron 65.0%
! GGTAGGAGTGGTGGAGGTGG+TGG + chr7_3:87490260-87490279 Msa1133750:CDS 65.0%
! AGGAGTGGTGGAGGTGGTGG+TGG + chr7_3:87490263-87490282 Msa1133750:CDS 65.0%
!! AGTGGTGGAGGTGGTGGTGG+TGG + chr7_3:87490266-87490285 Msa1133750:CDS 65.0%
CGGCGCCGCCGCATACATGA+CGG - chr7_3:87489806-87489825 None:intergenic 70.0%
CGTCATGTATGCGGCGGCGC+CGG + chr7_3:87489804-87489823 Msa1133750:intron 70.0%
CGGCGCCGCCGCATACATGA+CGG - chr7_3:87489806-87489825 None:intergenic 70.0%
CGTCATGTATGCGGCGGCGC+CGG + chr7_3:87489804-87489823 Msa1133750:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 87489557 87491585 87489557 ID=Msa1133750;Name=Msa1133750
chr7_3 mRNA 87489557 87491585 87489557 ID=Msa1133750-mRNA-1;Parent=Msa1133750;Name=Msa1133750-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0.5|0.5|0|0.5|2|459|359
chr7_3 exon 87489557 87489560 87489557 ID=Msa1133750-mRNA-1:exon:26340;Parent=Msa1133750-mRNA-1
chr7_3 exon 87490051 87491585 87490051 ID=Msa1133750-mRNA-1:exon:26341;Parent=Msa1133750-mRNA-1
chr7_3 CDS 87489557 87489560 87489557 ID=Msa1133750-mRNA-1:cds;Parent=Msa1133750-mRNA-1
chr7_3 CDS 87490051 87491126 87490051 ID=Msa1133750-mRNA-1:cds;Parent=Msa1133750-mRNA-1
chr7_3 three_prime_UTR 87491127 87491585 87491127 ID=Msa1133750-mRNA-1:three_prime_utr;Parent=Msa1133750-mRNA-1
Gene Sequence

>Msa1133750

ATGAATCAAATGTCAACTATGGCTCTTCTGCGTTTTACACCTTCATCTGGTCAAAGCCGTGCACTTTCATTTCCATCATCATTACCATCACCACCTCCACAGTTAAATAACCGTACTTCTATATATCTCACCAACCCATCACCCCATTTGCCTCAAAGGTTGAAAATTTCATTTGTCGGAGGTGATGGTGTTGGAAGTGGTGGTAGTGGTAGTGGTAGGAGTGGTGGAGGTGGTGGTGGTGGAAGTGAAAATTGGGGTGGTGCTAATAATGATAATGATGATGGAAAATCAAAAGATTCGTCTTTTGGGATTTTGGGTCTGTTTCTGAATGGATGGAGATCAAGGGTTGCTGCTGATCCACAGTTTCCTTTCAAGGTTTTGATGGAAGAGTTGGTTGGTGTTACTGCTTGTGTCTTAGGTGATATGGCTTCAAGGCCTAATTTTGGTTTGAATGAACTTGACTTTGTGTTTTCAACTCTTGTTGTTGGTGCTATTCTCAATTTCACACTTATGTATCTATTGGCACCAACATTAGGAGCTTCTTCTGCTAGTGTGCCTGCAATCTTTGCATCTTGTCCTAAGAGTCACATGTTTGAGCCTGGTGCTTTTAGTTTATTGGATAGGTTAGGTACTTTGGTGTATAAAGGTACCATTTTTGCTGCTGTTGGGTTTGGTGCTGGTCTTGCTGGTACAGCACTTTCAAATGGGTTGATTAAGATGAGGAAGAAAATGGATCCAAATTTTGAGACACCAAACAAAGCTCCACCTACTTTACTCAATTCTCTCACTTGGGCTGCTCATATGGGTTTCAGCAGTAATCTTAGGTACCAAACACTAAATGGTGCTGAGTTTGTGTTGGAGAAAGCGCTTAATCCTTTAGCATTCAAGTCCTCGGTGTTGGTGCTTAGGGTTGTGAACAATGTTCTTGGAGGAATGTCTTTTGTGGTTTTGGCAAGGTTGACAGGGTCACAGAGTTCTGGTGAGAAGCCATCACAATTGGAGGATGGATTAGTTGAGAAGGTTGAAAGGGAAAGGGAGGAGGCTTTGGAGAATAACAACCAAACAACATCAACAAAGTGA

Protein sequence

>Msa1133750

MNQMSTMALLRFTPSSGQSRALSFPSSLPSPPPQLNNRTSIYLTNPSPHLPQRLKISFVGGDGVGSGGSGSGRSGGGGGGGSENWGGANNDNDDGKSKDSSFGILGLFLNGWRSRVAADPQFPFKVLMEELVGVTACVLGDMASRPNFGLNELDFVFSTLVVGAILNFTLMYLLAPTLGASSASVPAIFASCPKSHMFEPGAFSLLDRLGTLVYKGTIFAAVGFGAGLAGTALSNGLIKMRKKMDPNFETPNKAPPTLLNSLTWAAHMGFSSNLRYQTLNGAEFVLEKALNPLAFKSSVLVLRVVNNVLGGMSFVVLARLTGSQSSGEKPSQLEDGLVEKVEREREEALENNNQTTSTK*