Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428980 | XP_003602870.1 | 91.195 | 318 | 18 | 2 | 1 | 309 | 1 | 317 | 0.0 | 576 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428980 | sp|Q28IV8|NGDN_XENTR | 30.175 | 285 | 153 | 10 | 24 | 282 | 18 | 282 | 3.70e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428980 | G7J4I5 | 91.195 | 318 | 18 | 2 | 1 | 309 | 1 | 317 | 0.0 | 576 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043500 | Msa0428980 | 0.809746 | 1.625104e-50 | -8.615850e-47 |
| Msa0043650 | Msa0428980 | 0.809664 | 1.692308e-50 | -8.615850e-47 |
| Msa0054440 | Msa0428980 | 0.812865 | 3.418445e-51 | -8.615850e-47 |
| Msa0054820 | Msa0428980 | 0.801995 | 6.921239e-49 | -8.615850e-47 |
| Msa0100160 | Msa0428980 | 0.802210 | 6.250164e-49 | -8.615850e-47 |
| Msa0127020 | Msa0428980 | 0.805633 | 1.214800e-49 | -8.615850e-47 |
| Msa0146770 | Msa0428980 | 0.815267 | 1.008965e-51 | -8.615850e-47 |
| Msa0169280 | Msa0428980 | 0.804175 | 2.450936e-49 | -8.615850e-47 |
| Msa0237210 | Msa0428980 | 0.810805 | 9.603189e-51 | -8.615850e-47 |
| Msa0378970 | Msa0428980 | 0.829016 | 6.517420e-55 | -8.615850e-47 |
| Msa0379600 | Msa0428980 | 0.894506 | 2.313421e-75 | -8.615850e-47 |
| Msa0428580 | Msa0428980 | 0.801898 | 7.246203e-49 | -8.615850e-47 |
| Msa0428980 | Msa0474940 | 0.822844 | 1.905661e-53 | -8.615850e-47 |
| Msa0428980 | Msa0480780 | 0.830899 | 2.265013e-55 | -8.615850e-47 |
| Msa0428980 | Msa0521670 | 0.801879 | 7.311240e-49 | -8.615850e-47 |
| Msa0428980 | Msa0618950 | 0.804633 | 1.966709e-49 | -8.615850e-47 |
| Msa0428980 | Msa0618970 | 0.802864 | 4.582736e-49 | -8.615850e-47 |
| Msa0428980 | Msa0652690 | 0.831566 | 1.552331e-55 | -8.615850e-47 |
| Msa0428980 | Msa0705390 | 0.825896 | 3.650606e-54 | -8.615850e-47 |
| Msa0428980 | Msa0880040 | 0.800767 | 1.235063e-48 | -8.615850e-47 |
| Msa0428980 | Msa0944660 | 0.809424 | 1.904896e-50 | -8.615850e-47 |
| Msa0428980 | Msa0945240 | 0.829100 | 6.218914e-55 | -8.615850e-47 |
| Msa0428980 | Msa0980940 | 0.805271 | 1.447126e-49 | -8.615850e-47 |
| Msa0428980 | Msa1133400 | 0.818891 | 1.547264e-52 | -8.615850e-47 |
| Msa0428980 | Msa1219000 | 0.805831 | 1.103889e-49 | -8.615850e-47 |
| Msa0428980 | Msa1255290 | 0.808666 | 2.768369e-50 | -8.615850e-47 |
| Msa0428980 | Msa1349520 | 0.806399 | 8.382409e-50 | -8.615850e-47 |
| Msa0428980 | Msa1359560 | 0.811608 | 6.428863e-51 | -8.615850e-47 |
| Msa0428980 | Msa1389850 | 0.801058 | 1.077108e-48 | -8.615850e-47 |
| Msa0428980 | Msa1437270 | 0.808806 | 2.584301e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428980 | MtrunA17_Chr3g0132641 | 91.195 | 318 | 18 | 2 | 1 | 309 | 1 | 317 | 0.0 | 576 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428980 | AT1G07840.2 | 47.910 | 311 | 133 | 10 | 15 | 310 | 14 | 310 | 1.25e-83 | 255 |
| Msa0428980 | AT1G07840.1 | 47.910 | 311 | 133 | 10 | 15 | 310 | 14 | 310 | 1.25e-83 | 255 |
| Msa0428980 | AT1G07840.3 | 48.708 | 271 | 119 | 6 | 15 | 272 | 14 | 277 | 1.45e-77 | 238 |
| Msa0428980 | AT2G43650.1 | 37.500 | 80 | 49 | 1 | 18 | 96 | 236 | 315 | 6.41e-12 | 66.6 |
Find 71 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAATAATGTCACCTCTTC+AGG | 0.247159 | 3_2:-80133524 | None:intergenic |
| CTAACAAGCATGTCAGGATT+TGG | 0.286704 | 3_2:-80133213 | None:intergenic |
| GCCCTCGTTTCTCGATTCTT+AGG | 0.310506 | 3_2:+80132398 | Msa0428980:five_prime_UTR |
| GAAATTTGCCCCTACATCTA+TGG | 0.323324 | 3_2:+80133385 | Msa0428980:CDS |
| GGCAATAATTCAAAAGCAAC+AGG | 0.349509 | 3_2:-80132873 | None:intergenic |
| ACTGGCCGTTCAAGCAAGTT+AGG | 0.356537 | 3_2:-80132338 | None:intergenic |
| AGAAAAGGTGGCAGAAGAAA+TGG | 0.358244 | 3_2:+80133958 | Msa0428980:CDS |
| GAATAAGTATATTAGCAAAA+TGG | 0.361698 | 3_2:+80133651 | Msa0428980:CDS |
| GGGCGGCGCTGGAGCGGTAT+TGG | 0.388482 | 3_2:-80132379 | None:intergenic |
| TCGAGAAACGAGGGCGGCGC+TGG | 0.405959 | 3_2:-80132390 | None:intergenic |
| TCAAAATTTCTTTGTCTCTC+CGG | 0.415536 | 3_2:-80133445 | None:intergenic |
| GTTGAATTCTGACAAAATCA+TGG | 0.431107 | 3_2:+80132558 | Msa0428980:exon |
| TGCCCCTACATCTATGGATC+TGG | 0.431885 | 3_2:+80133391 | Msa0428980:CDS |
| ATAGATGTAGGGGCAAATTT+CGG | 0.432254 | 3_2:-80133383 | None:intergenic |
| TACATGAAGAAAGCAACAAA+TGG | 0.436883 | 3_2:+80133748 | Msa0428980:CDS |
| CAGGTCAATGGTGAATGATA+TGG | 0.438432 | 3_2:+80133493 | Msa0428980:CDS |
| TTACTTGCTGCGAAAGGCTA+AGG | 0.442757 | 3_2:+80132909 | Msa0428980:CDS |
| ACTTTGCTAACAAGCATGTC+AGG | 0.446928 | 3_2:-80133219 | None:intergenic |
| TCGTTATTGAAATGATTCTC+AGG | 0.452123 | 3_2:-80132586 | None:intergenic |
| CTCTCCAGTGTCATCTTCAA+AGG | 0.469439 | 3_2:-80133920 | None:intergenic |
| TATTAGCAAAATGGAGGATC+GGG | 0.471917 | 3_2:+80133660 | Msa0428980:CDS |
| TCTACAATACTTCGAACAAC+AGG | 0.475558 | 3_2:-80132952 | None:intergenic |
| GACACTGGAGAGATAACAAC+GGG | 0.484955 | 3_2:+80133931 | Msa0428980:CDS |
| TTTCCAGATCCATAGATGTA+GGG | 0.489684 | 3_2:-80133394 | None:intergenic |
| TGCATTGTTGAAAGAAATGA+AGG | 0.500645 | 3_2:+80132750 | Msa0428980:CDS |
| AATCAAGATTCTACAGCAGA+TGG | 0.504788 | 3_2:+80132826 | Msa0428980:CDS |
| AATTTCTTTGTCTCTCCGGC+TGG | 0.507215 | 3_2:-80133441 | None:intergenic |
| TAAAACCTAACTTGCTTGAA+CGG | 0.508653 | 3_2:+80132333 | Msa0428980:five_prime_UTR |
| GCAAAATGGAGGATCGGGCT+AGG | 0.510188 | 3_2:+80133665 | Msa0428980:CDS |
| GCAAGTAATAAACAAGGGAT+TGG | 0.513031 | 3_2:-80132894 | None:intergenic |
| AGCGGTATTGGAGGTTGAGC+AGG | 0.517120 | 3_2:-80132367 | None:intergenic |
| ACATGAAGAAAGCAACAAAT+GGG | 0.521633 | 3_2:+80133749 | Msa0428980:CDS |
| TCTCCAGTGTCATCTTCAAA+GGG | 0.524270 | 3_2:-80133919 | None:intergenic |
| AATTCAAACTTTAACTGCCA+AGG | 0.524397 | 3_2:+80132798 | Msa0428980:CDS |
| CGGCGCTGGAGCGGTATTGG+AGG | 0.530266 | 3_2:-80132376 | None:intergenic |
| GAAAAGGTGGCAGAAGAAAT+GGG | 0.535559 | 3_2:+80133959 | Msa0428980:CDS |
| AAACGAGGGCGGCGCTGGAG+CGG | 0.547484 | 3_2:-80132385 | None:intergenic |
| TTCCAGATCCATAGATGTAG+GGG | 0.548710 | 3_2:-80133393 | None:intergenic |
| TGTTTATTACTTGCTGCGAA+AGG | 0.549122 | 3_2:+80132903 | Msa0428980:CDS |
| ATAACAACGGGATCCAGAAA+AGG | 0.549390 | 3_2:+80133943 | Msa0428980:CDS |
| ATATTAGCAAAATGGAGGAT+CGG | 0.562884 | 3_2:+80133659 | Msa0428980:CDS |
| TTCCTCTCTTCTCTAGTGAG+AGG | 0.563874 | 3_2:-80133715 | None:intergenic |
| ATCGTAGTCATCATTGAGAT+CGG | 0.564025 | 3_2:+80135122 | Msa0428980:intron |
| AGGTTGAGCAGGTCGCAGAC+TGG | 0.564678 | 3_2:-80132356 | None:intergenic |
| TACTTGCTGCGAAAGGCTAA+GGG | 0.569441 | 3_2:+80132910 | Msa0428980:CDS |
| GGATCGGGCTAGGCAAGAGG+AGG | 0.576064 | 3_2:+80133675 | Msa0428980:CDS |
| GAAAGTGCAACAAGTGATGC+TGG | 0.580076 | 3_2:+80133138 | Msa0428980:CDS |
| AATAAACTGACCTCAGCAGT+TGG | 0.584967 | 3_2:-80133246 | None:intergenic |
| TAGTTGTTGTCTTGTCGGGG+TGG | 0.585458 | 3_2:-80132312 | None:intergenic |
| GGAGGATCGGGCTAGGCAAG+AGG | 0.594916 | 3_2:+80133672 | Msa0428980:CDS |
| AGCAGGAAAGAAATGCCAGC+CGG | 0.599418 | 3_2:+80133426 | Msa0428980:CDS |
| CTATAGGATGGTGATGGTGA+TGG | 0.606500 | 3_2:+80133341 | Msa0428980:intron |
| AACAAGTGATGCTGGTGAGA+AGG | 0.606555 | 3_2:+80133146 | Msa0428980:CDS |
| TTCGCAGCAAGTAATAAACA+AGG | 0.608584 | 3_2:-80132900 | None:intergenic |
| CTTCTCTAGTGAGAGGAACA+CGG | 0.610902 | 3_2:-80133708 | None:intergenic |
| TTACCCTTTGAAGATGACAC+TGG | 0.611575 | 3_2:+80133916 | Msa0428980:CDS |
| TAAGTATATTAGCAAAATGG+AGG | 0.616444 | 3_2:+80133654 | Msa0428980:CDS |
| TAGGGGCAAATTTCGGAGGA+CGG | 0.617034 | 3_2:-80133376 | None:intergenic |
| TATGGAAGACAGACCTGAAG+AGG | 0.625549 | 3_2:+80133511 | Msa0428980:CDS |
| TGGGAAGTTGAAGAAGCGAA+AGG | 0.631938 | 3_2:+80133978 | Msa0428980:CDS |
| ACCTAAGAATCGAGAAACGA+GGG | 0.635729 | 3_2:-80132399 | None:intergenic |
| ACAACGGGATCCAGAAAAGG+TGG | 0.643347 | 3_2:+80133946 | Msa0428980:CDS |
| TTGTTGAAAGAAATGAAGGA+AGG | 0.648804 | 3_2:+80132754 | Msa0428980:CDS |
| TTCCTCTCACTAGAGAAGAG+AGG | 0.650937 | 3_2:+80133713 | Msa0428980:CDS |
| TCGCAGCAAGTAATAAACAA+GGG | 0.657491 | 3_2:-80132899 | None:intergenic |
| CAAAGTAGAACCAACTGCTG+AGG | 0.659817 | 3_2:+80133236 | Msa0428980:CDS |
| GATGTAGGGGCAAATTTCGG+AGG | 0.659828 | 3_2:-80133380 | None:intergenic |
| TTTATGCTATAGGATGGTGA+TGG | 0.673940 | 3_2:+80133335 | Msa0428980:intron |
| AACCTAAGAATCGAGAAACG+AGG | 0.678288 | 3_2:-80132400 | None:intergenic |
| TGACACTGGAGAGATAACAA+CGG | 0.690971 | 3_2:+80133930 | Msa0428980:CDS |
| TAAGAATCGAGAAACGAGGG+CGG | 0.734368 | 3_2:-80132396 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAGAGTTTTATTATATT+AGG | + | chr3_2:80132679-80132698 | Msa0428980:intron | 10.0% |
| !!! | TGACATTATTATTTTATTTT+TGG | + | chr3_2:80133534-80133553 | Msa0428980:intron | 10.0% |
| !!! | TTATTATTTTATTTTTGGTG+TGG | + | chr3_2:80133539-80133558 | Msa0428980:intron | 15.0% |
| !!! | ACTTAAATGATTTTATGTAA+TGG | + | chr3_2:80133571-80133590 | Msa0428980:intron | 15.0% |
| !!! | TTTTATAAAAGCAAATTATC+AGG | - | chr3_2:80133786-80133805 | None:intergenic | 15.0% |
| !! | GAAAACAAACAATTAAAAAA+AGG | - | chr3_2:80133827-80133846 | None:intergenic | 15.0% |
| !!! | ATAATTTCAAAGTATCAAAA+GGG | - | chr3_2:80134008-80134027 | None:intergenic | 15.0% |
| !!! | AATAATTTCAAAGTATCAAA+AGG | - | chr3_2:80134009-80134028 | None:intergenic | 15.0% |
| !! | AATTATTCATAAGCAAAATT+TGG | - | chr3_2:80134484-80134503 | None:intergenic | 15.0% |
| !! | AATAAAAATAAGCGAACAAA+CGG | - | chr3_2:80132475-80132494 | None:intergenic | 20.0% |
| !!! | GATACGATTATTTTTAGAAA+AGG | + | chr3_2:80132975-80132994 | Msa0428980:intron | 20.0% |
| !!! | TATTGTTGTTTTTTGTCAAT+CGG | - | chr3_2:80133090-80133109 | None:intergenic | 20.0% |
| !!! | CTTTAATTAGTTTTTGGATT+TGG | - | chr3_2:80133113-80133132 | None:intergenic | 20.0% |
| !! | GAATAAGTATATTAGCAAAA+TGG | + | chr3_2:80133651-80133670 | Msa0428980:CDS | 20.0% |
| !! | AATGTACATCATAAAACATT+AGG | - | chr3_2:80134253-80134272 | None:intergenic | 20.0% |
| !!! | GTTTTATGATGTACATTTAT+AGG | + | chr3_2:80134256-80134275 | Msa0428980:intron | 20.0% |
| !!! | TTTAATTTTATTTCTTGCCA+TGG | - | chr3_2:80134618-80134637 | None:intergenic | 20.0% |
| !!! | CAGTTTTTAATTCAAAAGTT+TGG | + | chr3_2:80134721-80134740 | Msa0428980:intron | 20.0% |
| !! | CTATTCAATTTTTGTTCACT+TGG | + | chr3_2:80132629-80132648 | Msa0428980:intron | 25.0% |
| !!! | CACTAGCTTTAATTAGTTTT+TGG | - | chr3_2:80133119-80133138 | None:intergenic | 25.0% |
| ! | TAAGTATATTAGCAAAATGG+AGG | + | chr3_2:80133654-80133673 | Msa0428980:CDS | 25.0% |
| !! | ACACTACATCTTTTAAACAT+TGG | + | chr3_2:80134046-80134065 | Msa0428980:intron | 25.0% |
| !! | TTTAGGTTAAATAGATTCCT+TGG | - | chr3_2:80134206-80134225 | None:intergenic | 25.0% |
| !! | GATACTAAGACAACAATTTT+AGG | - | chr3_2:80134223-80134242 | None:intergenic | 25.0% |
| !! | ATTAAAATCTAAGGTTGTCT+TGG | + | chr3_2:80134330-80134349 | Msa0428980:intron | 25.0% |
| !!! | TGGCTAATAAATAGTTTTAC+TGG | + | chr3_2:80134350-80134369 | Msa0428980:intron | 25.0% |
| !!! | GGCTAATAAATAGTTTTACT+GGG | + | chr3_2:80134351-80134370 | Msa0428980:intron | 25.0% |
| ! | CTATACAACATAATCTAAAC+TGG | + | chr3_2:80134581-80134600 | Msa0428980:intron | 25.0% |
| ! | AATAAAGCAAAATTGCACAT+AGG | - | chr3_2:80134693-80134712 | None:intergenic | 25.0% |
| ! | AACATTGATGGAAGAAAATT+TGG | + | chr3_2:80134892-80134911 | Msa0428980:intron | 25.0% |
| ! | ACATTGATGGAAGAAAATTT+GGG | + | chr3_2:80134893-80134912 | Msa0428980:intron | 25.0% |
| !! | TAAAACCTAACTTGCTTGAA+CGG | + | chr3_2:80132333-80132352 | Msa0428980:five_prime_UTR | 30.0% |
| ACAAACGGTGTTTCAAAATA+GGG | - | chr3_2:80132460-80132479 | None:intergenic | 30.0% | |
| AACAAACGGTGTTTCAAAAT+AGG | - | chr3_2:80132461-80132480 | None:intergenic | 30.0% | |
| !! | GAGAAGTGTTAAAAATAACG+AGG | - | chr3_2:80132516-80132535 | None:intergenic | 30.0% |
| GTTGAATTCTGACAAAATCA+TGG | + | chr3_2:80132558-80132577 | Msa0428980:exon | 30.0% | |
| TCGTTATTGAAATGATTCTC+AGG | - | chr3_2:80132589-80132608 | None:intergenic | 30.0% | |
| TGCATTGTTGAAAGAAATGA+AGG | + | chr3_2:80132750-80132769 | Msa0428980:CDS | 30.0% | |
| TTGTTGAAAGAAATGAAGGA+AGG | + | chr3_2:80132754-80132773 | Msa0428980:CDS | 30.0% | |
| AATTCAAACTTTAACTGCCA+AGG | + | chr3_2:80132798-80132817 | Msa0428980:CDS | 30.0% | |
| ! | AGAATCTTGATTTTTGACCT+TGG | - | chr3_2:80132818-80132837 | None:intergenic | 30.0% |
| ! | TGAAACATCTTCACTCTTTT+TGG | - | chr3_2:80133184-80133203 | None:intergenic | 30.0% |
| ACCTAATTCGTTTATGCTAT+AGG | + | chr3_2:80133325-80133344 | Msa0428980:intron | 30.0% | |
| TCCTATAGCATAAACGAATT+AGG | - | chr3_2:80133329-80133348 | None:intergenic | 30.0% | |
| AATTCGTTTATGCTATAGGA+TGG | + | chr3_2:80133329-80133348 | Msa0428980:intron | 30.0% | |
| TCAAAATTTCTTTGTCTCTC+CGG | - | chr3_2:80133448-80133467 | None:intergenic | 30.0% | |
| ! | CTAAGCAAAGTGATTTTATC+AGG | + | chr3_2:80133474-80133493 | Msa0428980:CDS | 30.0% |
| ! | AAGTGATTTTATCAGGTCAA+TGG | + | chr3_2:80133481-80133500 | Msa0428980:CDS | 30.0% |
| AATAATAATGTCACCTCTTC+AGG | - | chr3_2:80133527-80133546 | None:intergenic | 30.0% | |
| ! | TACTCAGATAAGAGATTTTG+AGG | + | chr3_2:80133612-80133631 | Msa0428980:intron | 30.0% |
| ! | ACTCAGATAAGAGATTTTGA+GGG | + | chr3_2:80133613-80133632 | Msa0428980:intron | 30.0% |
| ATATTAGCAAAATGGAGGAT+CGG | + | chr3_2:80133659-80133678 | Msa0428980:CDS | 30.0% | |
| TACATGAAGAAAGCAACAAA+TGG | + | chr3_2:80133748-80133767 | Msa0428980:CDS | 30.0% | |
| ACATGAAGAAAGCAACAAAT+GGG | + | chr3_2:80133749-80133768 | Msa0428980:CDS | 30.0% | |
| CATTCATTTCAGTTCAACTT+TGG | + | chr3_2:80134076-80134095 | Msa0428980:intron | 30.0% | |
| TGGATCCTCATTAAAATCTA+AGG | + | chr3_2:80134321-80134340 | Msa0428980:intron | 30.0% | |
| !! | GACAACCTTAGATTTTAATG+AGG | - | chr3_2:80134329-80134348 | None:intergenic | 30.0% |
| AACAGGAAATAACAGGTATT+TGG | - | chr3_2:80134388-80134407 | None:intergenic | 30.0% | |
| AAAAGGTAACAGGAAATAAC+AGG | - | chr3_2:80134395-80134414 | None:intergenic | 30.0% | |
| !!! | AGCAATGATGTTTTGGTTAT+TGG | + | chr3_2:80134427-80134446 | Msa0428980:intron | 30.0% |
| TGATGAACAATACACTTCAA+AGG | - | chr3_2:80134645-80134664 | None:intergenic | 30.0% | |
| ATTCAAAAGTTTGGAAGCAA+AGG | + | chr3_2:80134730-80134749 | Msa0428980:intron | 30.0% | |
| CAAAAGTAGTTGAAAGGAAA+AGG | - | chr3_2:80134779-80134798 | None:intergenic | 30.0% | |
| TATAATGTTTCAGTTGAGCT+AGG | + | chr3_2:80134839-80134858 | Msa0428980:intron | 30.0% | |
| ATAATGTTTCAGTTGAGCTA+GGG | + | chr3_2:80134840-80134859 | Msa0428980:intron | 30.0% | |
| !! | TTTTAGTTGTTGTCTTGTCG+GGG | - | chr3_2:80132318-80132337 | None:intergenic | 35.0% |
| !!! | GTTTTAGTTGTTGTCTTGTC+GGG | - | chr3_2:80132319-80132338 | None:intergenic | 35.0% |
| !!! | GGTTTTAGTTGTTGTCTTGT+CGG | - | chr3_2:80132320-80132339 | None:intergenic | 35.0% |
| GGTGTTTCAAAATAGGGTAA+GGG | - | chr3_2:80132454-80132473 | None:intergenic | 35.0% | |
| AATCAAGATTCTACAGCAGA+TGG | + | chr3_2:80132826-80132845 | Msa0428980:CDS | 35.0% | |
| GGCAATAATTCAAAAGCAAC+AGG | - | chr3_2:80132876-80132895 | None:intergenic | 35.0% | |
| GCAAGTAATAAACAAGGGAT+TGG | - | chr3_2:80132897-80132916 | None:intergenic | 35.0% | |
| TCGCAGCAAGTAATAAACAA+GGG | - | chr3_2:80132902-80132921 | None:intergenic | 35.0% | |
| TTCGCAGCAAGTAATAAACA+AGG | - | chr3_2:80132903-80132922 | None:intergenic | 35.0% | |
| ! | TGTTTATTACTTGCTGCGAA+AGG | + | chr3_2:80132903-80132922 | Msa0428980:CDS | 35.0% |
| TCTACAATACTTCGAACAAC+AGG | - | chr3_2:80132955-80132974 | None:intergenic | 35.0% | |
| CTTGTATGTGTGTGTAAACT+TGG | + | chr3_2:80133009-80133028 | Msa0428980:intron | 35.0% | |
| TCAAGTGCAAATTTGTGATG+TGG | + | chr3_2:80133277-80133296 | Msa0428980:intron | 35.0% | |
| TTTATGCTATAGGATGGTGA+TGG | + | chr3_2:80133335-80133354 | Msa0428980:intron | 35.0% | |
| ATAGATGTAGGGGCAAATTT+CGG | - | chr3_2:80133386-80133405 | None:intergenic | 35.0% | |
| TTTCCAGATCCATAGATGTA+GGG | - | chr3_2:80133397-80133416 | None:intergenic | 35.0% | |
| ! | TTTTCCAGATCCATAGATGT+AGG | - | chr3_2:80133398-80133417 | None:intergenic | 35.0% |
| TCTGGAAAAATCTTCAAAGC+AGG | + | chr3_2:80133409-80133428 | Msa0428980:CDS | 35.0% | |
| TATTAGCAAAATGGAGGATC+GGG | + | chr3_2:80133660-80133679 | Msa0428980:CDS | 35.0% | |
| AAGAAAGCAACAAATGGGTA+CGG | + | chr3_2:80133754-80133773 | Msa0428980:intron | 35.0% | |
| CCTGGAAAATAGTAAACAGA+TGG | - | chr3_2:80133854-80133873 | None:intergenic | 35.0% | |
| ! | CCATCTGTTTACTATTTTCC+AGG | + | chr3_2:80133851-80133870 | Msa0428980:intron | 35.0% |
| ! | TTACTATTTTCCAGGATGCA+AGG | + | chr3_2:80133859-80133878 | Msa0428980:intron | 35.0% |
| TCATTTCAGTTCAACTTTGG+TGG | + | chr3_2:80134079-80134098 | Msa0428980:intron | 35.0% | |
| !! | GATTTTAATGAGGATCCATG+AGG | - | chr3_2:80134319-80134338 | None:intergenic | 35.0% |
| TAACAGGTATTTGGCAGATA+TGG | - | chr3_2:80134379-80134398 | None:intergenic | 35.0% | |
| TAATCTGTGTGCATAACTAG+TGG | - | chr3_2:80134517-80134536 | None:intergenic | 35.0% | |
| AAGCAAAATTGCACATAGGA+AGG | - | chr3_2:80134689-80134708 | None:intergenic | 35.0% | |
| GGATGTCAAAAGTAGTTGAA+AGG | - | chr3_2:80134785-80134804 | None:intergenic | 35.0% | |
| AATTGCACAGAATGACACAA+AGG | - | chr3_2:80134806-80134825 | None:intergenic | 35.0% | |
| ! | TGAAAAACACTGCATGCTTT+TGG | + | chr3_2:80134947-80134966 | Msa0428980:intron | 35.0% |
| CAATTCCTATATGCAAAGTG+TGG | + | chr3_2:80135048-80135067 | Msa0428980:intron | 35.0% | |
| ATCGTAGTCATCATTGAGAT+CGG | + | chr3_2:80135122-80135141 | Msa0428980:intron | 35.0% | |
| ACCTAAGAATCGAGAAACGA+GGG | - | chr3_2:80132402-80132421 | None:intergenic | 40.0% | |
| AACCTAAGAATCGAGAAACG+AGG | - | chr3_2:80132403-80132422 | None:intergenic | 40.0% | |
| CGGTGTTTCAAAATAGGGTA+AGG | - | chr3_2:80132455-80132474 | None:intergenic | 40.0% | |
| CTAACAAGCATGTCAGGATT+TGG | - | chr3_2:80133216-80133235 | None:intergenic | 40.0% | |
| ACTTTGCTAACAAGCATGTC+AGG | - | chr3_2:80133222-80133241 | None:intergenic | 40.0% | |
| AATAAACTGACCTCAGCAGT+TGG | - | chr3_2:80133249-80133268 | None:intergenic | 40.0% | |
| GAAATTTGCCCCTACATCTA+TGG | + | chr3_2:80133385-80133404 | Msa0428980:CDS | 40.0% | |
| TTCCAGATCCATAGATGTAG+GGG | - | chr3_2:80133396-80133415 | None:intergenic | 40.0% | |
| CAGGTCAATGGTGAATGATA+TGG | + | chr3_2:80133493-80133512 | Msa0428980:CDS | 40.0% | |
| AGAAAGCAACAAATGGGTAC+GGG | + | chr3_2:80133755-80133774 | Msa0428980:intron | 40.0% | |
| ! | TTACCCTTTGAAGATGACAC+TGG | + | chr3_2:80133916-80133935 | Msa0428980:CDS | 40.0% |
| TCTCCAGTGTCATCTTCAAA+GGG | - | chr3_2:80133922-80133941 | None:intergenic | 40.0% | |
| TGACACTGGAGAGATAACAA+CGG | + | chr3_2:80133930-80133949 | Msa0428980:CDS | 40.0% | |
| ATAACAACGGGATCCAGAAA+AGG | + | chr3_2:80133943-80133962 | Msa0428980:CDS | 40.0% | |
| ! | ATTTCTTCTGCCACCTTTTC+TGG | - | chr3_2:80133959-80133978 | None:intergenic | 40.0% |
| AGAAAAGGTGGCAGAAGAAA+TGG | + | chr3_2:80133958-80133977 | Msa0428980:CDS | 40.0% | |
| GAAAAGGTGGCAGAAGAAAT+GGG | + | chr3_2:80133959-80133978 | Msa0428980:CDS | 40.0% | |
| TAGATTCCTTGGAAACACCA+GGG | - | chr3_2:80134195-80134214 | None:intergenic | 40.0% | |
| ATAGATTCCTTGGAAACACC+AGG | - | chr3_2:80134196-80134215 | None:intergenic | 40.0% | |
| TCCATGAGGTTAGAAAGCTT+GGG | - | chr3_2:80134305-80134324 | None:intergenic | 40.0% | |
| ATCCATGAGGTTAGAAAGCT+TGG | - | chr3_2:80134306-80134325 | None:intergenic | 40.0% | |
| ! | TGGGGTAAGCAATGATGTTT+TGG | + | chr3_2:80134420-80134439 | Msa0428980:intron | 40.0% |
| !! | AACTGGTTTGTAGATGACCA+TGG | + | chr3_2:80134598-80134617 | Msa0428980:intron | 40.0% |
| GAGCTAGGGACTAACAATTT+CGG | + | chr3_2:80134854-80134873 | Msa0428980:intron | 40.0% | |
| CAATTTCGGATTCTTTGCAG+AGG | + | chr3_2:80134868-80134887 | Msa0428980:intron | 40.0% | |
| CTTTGCAGAGGAAACATTGA+TGG | + | chr3_2:80134880-80134899 | Msa0428980:intron | 40.0% | |
| ! | TAGCAGTACAGTCTTGTAGT+AGG | - | chr3_2:80134925-80134944 | None:intergenic | 40.0% |
| ! | AAAACACTGCATGCTTTTGG+AGG | + | chr3_2:80134950-80134969 | Msa0428980:intron | 40.0% |
| !! | CTTTTGGAGGAAGTAATGCA+AGG | + | chr3_2:80134963-80134982 | Msa0428980:intron | 40.0% |
| CAGTTCCACACTTTGCATAT+AGG | - | chr3_2:80135056-80135075 | None:intergenic | 40.0% | |
| ATATGCAAAGTGTGGAACTG+TGG | + | chr3_2:80135056-80135075 | Msa0428980:intron | 40.0% | |
| GAACTGTGGCTAAACAAGTA+GGG | + | chr3_2:80135070-80135089 | Msa0428980:intron | 40.0% | |
| TAAGAATCGAGAAACGAGGG+CGG | - | chr3_2:80132399-80132418 | None:intergenic | 45.0% | |
| ! | TTACTTGCTGCGAAAGGCTA+AGG | + | chr3_2:80132909-80132928 | Msa0428980:CDS | 45.0% |
| ! | TACTTGCTGCGAAAGGCTAA+GGG | + | chr3_2:80132910-80132929 | Msa0428980:CDS | 45.0% |
| ! | GAAAGTGCAACAAGTGATGC+TGG | + | chr3_2:80133138-80133157 | Msa0428980:CDS | 45.0% |
| AACAAGTGATGCTGGTGAGA+AGG | + | chr3_2:80133146-80133165 | Msa0428980:CDS | 45.0% | |
| ! | TCACTCTTTTTGGATGCAGC+TGG | - | chr3_2:80133174-80133193 | None:intergenic | 45.0% |
| CAAAGTAGAACCAACTGCTG+AGG | + | chr3_2:80133236-80133255 | Msa0428980:CDS | 45.0% | |
| !! | CTATAGGATGGTGATGGTGA+TGG | + | chr3_2:80133341-80133360 | Msa0428980:intron | 45.0% |
| AATTTCTTTGTCTCTCCGGC+TGG | - | chr3_2:80133444-80133463 | None:intergenic | 45.0% | |
| TATGGAAGACAGACCTGAAG+AGG | + | chr3_2:80133511-80133530 | Msa0428980:CDS | 45.0% | |
| CTTCTCTAGTGAGAGGAACA+CGG | - | chr3_2:80133711-80133730 | None:intergenic | 45.0% | |
| TTCCTCTCACTAGAGAAGAG+AGG | + | chr3_2:80133713-80133732 | Msa0428980:CDS | 45.0% | |
| TTCCTCTCTTCTCTAGTGAG+AGG | - | chr3_2:80133718-80133737 | None:intergenic | 45.0% | |
| GAAAGCAACAAATGGGTACG+GGG | + | chr3_2:80133756-80133775 | Msa0428980:intron | 45.0% | |
| CTCAGTTAAACCTTGCATCC+TGG | - | chr3_2:80133872-80133891 | None:intergenic | 45.0% | |
| CTCTCCAGTGTCATCTTCAA+AGG | - | chr3_2:80133923-80133942 | None:intergenic | 45.0% | |
| GACACTGGAGAGATAACAAC+GGG | + | chr3_2:80133931-80133950 | Msa0428980:CDS | 45.0% | |
| TGGGAAGTTGAAGAAGCGAA+AGG | + | chr3_2:80133978-80133997 | Msa0428980:CDS | 45.0% | |
| ! | TGATTTTCTTCTGCTGTCCC+TGG | + | chr3_2:80134175-80134194 | Msa0428980:intron | 45.0% |
| ACCCAAGCTTTCTAACCTCA+TGG | + | chr3_2:80134301-80134320 | Msa0428980:intron | 45.0% | |
| ! | TTCCTGTTACCTTTTGCCTC+TGG | + | chr3_2:80134400-80134419 | Msa0428980:intron | 45.0% |
| ! | TCCTGTTACCTTTTGCCTCT+GGG | + | chr3_2:80134401-80134420 | Msa0428980:intron | 45.0% |
| AACATCATTGCTTACCCCAG+AGG | - | chr3_2:80134419-80134438 | None:intergenic | 45.0% | |
| GGAAAAGGTCACATAGCTTG+AGG | - | chr3_2:80134764-80134783 | None:intergenic | 45.0% | |
| GTTGAAGCCAGAGTTGGATT+TGG | + | chr3_2:80134990-80135009 | Msa0428980:intron | 45.0% | |
| AAAACCATGACAGCCAAGGA+GGG | - | chr3_2:80135025-80135044 | None:intergenic | 45.0% | |
| GAAGAAAACCATGACAGCCA+AGG | - | chr3_2:80135029-80135048 | None:intergenic | 45.0% | |
| GGAACTGTGGCTAAACAAGT+AGG | + | chr3_2:80135069-80135088 | Msa0428980:intron | 45.0% | |
| TAGTTGTTGTCTTGTCGGGG+TGG | - | chr3_2:80132315-80132334 | None:intergenic | 50.0% | |
| ACTGGCCGTTCAAGCAAGTT+AGG | - | chr3_2:80132341-80132360 | None:intergenic | 50.0% | |
| GCCCTCGTTTCTCGATTCTT+AGG | + | chr3_2:80132398-80132417 | Msa0428980:five_prime_UTR | 50.0% | |
| TAGGGGCAAATTTCGGAGGA+CGG | - | chr3_2:80133379-80133398 | None:intergenic | 50.0% | |
| GATGTAGGGGCAAATTTCGG+AGG | - | chr3_2:80133383-80133402 | None:intergenic | 50.0% | |
| TGCCCCTACATCTATGGATC+TGG | + | chr3_2:80133391-80133410 | Msa0428980:CDS | 50.0% | |
| AGCAGGAAAGAAATGCCAGC+CGG | + | chr3_2:80133426-80133445 | Msa0428980:CDS | 50.0% | |
| ACAACGGGATCCAGAAAAGG+TGG | + | chr3_2:80133946-80133965 | Msa0428980:CDS | 50.0% | |
| ! | CCTGTTACCTTTTGCCTCTG+GGG | + | chr3_2:80134402-80134421 | Msa0428980:intron | 50.0% |
| TTGCTTACCCCAGAGGCAAA+AGG | - | chr3_2:80134412-80134431 | None:intergenic | 50.0% | |
| ! | GGTAGTGTTGAAGCCAGAGT+TGG | + | chr3_2:80134984-80135003 | Msa0428980:intron | 50.0% |
| GAATGCGCCAAATCCAACTC+TGG | - | chr3_2:80135000-80135019 | None:intergenic | 50.0% | |
| GAAAACCATGACAGCCAAGG+AGG | - | chr3_2:80135026-80135045 | None:intergenic | 50.0% | |
| ! | CTTGTCGGGGTGGAGCTTTT+AGG | - | chr3_2:80132305-80132324 | None:intergenic | 55.0% |
| ! | AGCGGTATTGGAGGTTGAGC+AGG | - | chr3_2:80132370-80132389 | None:intergenic | 55.0% |
| GCAAAATGGAGGATCGGGCT+AGG | + | chr3_2:80133665-80133684 | Msa0428980:CDS | 55.0% | |
| GCAACAAATGGGTACGGGGA+AGG | + | chr3_2:80133760-80133779 | Msa0428980:intron | 55.0% | |
| TGCTGTCCCTGGTGTTTCCA+AGG | + | chr3_2:80134186-80134205 | Msa0428980:intron | 55.0% | |
| CCCCAGAGGCAAAAGGTAAC+AGG | - | chr3_2:80134405-80134424 | None:intergenic | 55.0% | |
| AGGTTGAGCAGGTCGCAGAC+TGG | - | chr3_2:80132359-80132378 | None:intergenic | 60.0% | |
| TTGGCGCATTCCTCCCTCCT+TGG | + | chr3_2:80135009-80135028 | Msa0428980:intron | 60.0% | |
| TCCTCCCTCCTTGGCTGTCA+TGG | + | chr3_2:80135018-80135037 | Msa0428980:intron | 60.0% | |
| ACCATGACAGCCAAGGAGGG+AGG | - | chr3_2:80135022-80135041 | None:intergenic | 60.0% | |
| ! | GGAGGATCGGGCTAGGCAAG+AGG | + | chr3_2:80133672-80133691 | Msa0428980:CDS | 65.0% |
| ! | GGATCGGGCTAGGCAAGAGG+AGG | + | chr3_2:80133675-80133694 | Msa0428980:CDS | 65.0% |
| ! | CGGCGCTGGAGCGGTATTGG+AGG | - | chr3_2:80132379-80132398 | None:intergenic | 70.0% |
| ! | AAACGAGGGCGGCGCTGGAG+CGG | - | chr3_2:80132388-80132407 | None:intergenic | 70.0% |
| TCGAGAAACGAGGGCGGCGC+TGG | - | chr3_2:80132393-80132412 | None:intergenic | 70.0% | |
| ! | GGGCGGCGCTGGAGCGGTAT+TGG | - | chr3_2:80132382-80132401 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 80132290 | 80135155 | 80132290 | ID=Msa0428980;Name=Msa0428980 |
| chr3_2 | mRNA | 80132290 | 80135155 | 80132290 | ID=Msa0428980-mRNA-1;Parent=Msa0428980;Name=Msa0428980-mRNA-1;_AED=0.19;_eAED=0.21;_QI=160|0.71|0.75|1|0.57|0.5|8|0|317 |
| chr3_2 | exon | 80132290 | 80132419 | 80132290 | ID=Msa0428980-mRNA-1:exon:21760;Parent=Msa0428980-mRNA-1 |
| chr3_2 | exon | 80132547 | 80132623 | 80132547 | ID=Msa0428980-mRNA-1:exon:21761;Parent=Msa0428980-mRNA-1 |
| chr3_2 | exon | 80132732 | 80132969 | 80132732 | ID=Msa0428980-mRNA-1:exon:21762;Parent=Msa0428980-mRNA-1 |
| chr3_2 | exon | 80133081 | 80133257 | 80133081 | ID=Msa0428980-mRNA-1:exon:21763;Parent=Msa0428980-mRNA-1 |
| chr3_2 | exon | 80133347 | 80133532 | 80133347 | ID=Msa0428980-mRNA-1:exon:21764;Parent=Msa0428980-mRNA-1 |
| chr3_2 | exon | 80133619 | 80133770 | 80133619 | ID=Msa0428980-mRNA-1:exon:21765;Parent=Msa0428980-mRNA-1 |
| chr3_2 | exon | 80133873 | 80133999 | 80133873 | ID=Msa0428980-mRNA-1:exon:21766;Parent=Msa0428980-mRNA-1 |
| chr3_2 | exon | 80135129 | 80135155 | 80135129 | ID=Msa0428980-mRNA-1:exon:21767;Parent=Msa0428980-mRNA-1 |
| chr3_2 | five_prime_UTR | 80132290 | 80132419 | 80132290 | ID=Msa0428980-mRNA-1:five_prime_utr;Parent=Msa0428980-mRNA-1 |
| chr3_2 | five_prime_UTR | 80132547 | 80132576 | 80132547 | ID=Msa0428980-mRNA-1:five_prime_utr;Parent=Msa0428980-mRNA-1 |
| chr3_2 | CDS | 80132577 | 80132623 | 80132577 | ID=Msa0428980-mRNA-1:cds;Parent=Msa0428980-mRNA-1 |
| chr3_2 | CDS | 80132732 | 80132969 | 80132732 | ID=Msa0428980-mRNA-1:cds;Parent=Msa0428980-mRNA-1 |
| chr3_2 | CDS | 80133081 | 80133257 | 80133081 | ID=Msa0428980-mRNA-1:cds;Parent=Msa0428980-mRNA-1 |
| chr3_2 | CDS | 80133347 | 80133532 | 80133347 | ID=Msa0428980-mRNA-1:cds;Parent=Msa0428980-mRNA-1 |
| chr3_2 | CDS | 80133619 | 80133770 | 80133619 | ID=Msa0428980-mRNA-1:cds;Parent=Msa0428980-mRNA-1 |
| chr3_2 | CDS | 80133873 | 80133999 | 80133873 | ID=Msa0428980-mRNA-1:cds;Parent=Msa0428980-mRNA-1 |
| chr3_2 | CDS | 80135129 | 80135155 | 80135129 | ID=Msa0428980-mRNA-1:cds;Parent=Msa0428980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
