AlfalfaGEDB | Msa1255290

M. sativa cultivar zhongmu-4 / Msa1255290

KEGG: K11093
GO: GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071004 GO:0071010 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904
PFAM: PF12220.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1255290	XP_003629469.1	98.611	504	5	1	1	504	1	502	0.0	974

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1255290	sp\|Q42404\|RU17_ARATH	74.038	312	68	4	3	313	6	305	2.95e-158	459

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1255290	G7LEU2	98.611	504	5	1	1	504	1	502	0.0	974

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa1255290	0.807308	5.387077e-50	-8.615850e-47
Msa0006110	Msa1255290	0.810223	1.282901e-50	-8.615850e-47
Msa0007440	Msa1255290	0.807953	3.929082e-50	-8.615850e-47
Msa0015120	Msa1255290	0.802370	5.794568e-49	-8.615850e-47
Msa0015610	Msa1255290	0.822734	2.021668e-53	-8.615850e-47
Msa0026710	Msa1255290	0.800124	1.669543e-48	-8.615850e-47
Msa0029240	Msa1255290	0.812850	3.445364e-51	-8.615850e-47
Msa0031180	Msa1255290	0.847243	1.308123e-59	-8.615850e-47
Msa0032430	Msa1255290	0.803200	3.905336e-49	-8.615850e-47
Msa0036140	Msa1255290	0.866087	3.683952e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1255290	MtrunA17_Chr8g0373481	96.812	345	9	1	160	504	50	392	0.0	629
Msa1255290	MtrunA17_Chr8g0373491	98.204	167	3	0	1	167	1	167	4.85e-118	344
Msa1255290	MtrunA17_Chr7g0250801	39.716	141	82	1	112	252	40	177	6.41e-28	117
Msa1255290	MtrunA17_Chr1g0198431	38.554	83	49	1	135	217	192	272	1.04e-12	68.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1255290	AT3G50670.1	74.038	312	68	4	3	313	6	305	3.00e-159	459
Msa1255290	AT3G50670.2	80.864	162	31	0	3	164	6	167	6.43e-93	281
Msa1255290	AT2G43370.2	45.192	104	57	0	121	224	50	153	5.23e-20	88.6
Msa1255290	AT2G43370.1	33.660	306	164	10	121	412	50	330	2.82e-19	89.4
Msa1255290	AT3G46020.1	38.158	76	47	0	137	212	9	84	4.14e-13	65.9

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Find 181 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAGTTTGAGTCATA+TGG	0.456755	8_2:-53753840	Msa1255290:CDS
AAAATCTAAATCGCGTGATA+GGG	0.508180	8_2:-53750443	Msa1255290:CDS
AAACATGAGAAGGAACCTCA+TGG	0.637977	8_2:-53750685	Msa1255290:CDS
AAAGTTTACTACTGCAGCTT+TGG	0.381319	8_2:-53750128	Msa1255290:three_prime_UTR
AAATACTTCTTTAATTTCTC+TGG	0.338538	8_2:-53750338	Msa1255290:intron
AAATTCGCAGTCAATCCAGT+TGG	0.602338	8_2:+53755185	None:intergenic
AACCATTATGAGCATCAGAG+AGG	0.693206	8_2:-53750559	Msa1255290:CDS
AACCTCATGGTGAAATAGAG+CGG	0.629338	8_2:-53750672	Msa1255290:CDS
AACCTGATGATCATCGTGGG+CGG	0.686614	8_2:-53750642	Msa1255290:CDS
AACGATCTAGCGATAAGGCT+AGG	0.563436	8_2:-53750999	Msa1255290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGATGAAATCGTTAGATC+CGG	+	chr8_2:53749903-53749922	None:intergenic	30.0%
CAAATTAACAACGAAAAGTG+AGG	+	chr8_2:53750069-53750088	None:intergenic	30.0%
TATGGGTAAGAATGTAAGAT+TGG	-	chr8_2:53750706-53750725	Msa1255290:CDS	30.0%
ATTAGTACCATACAAAATGC+AGG	+	chr8_2:53750927-53750946	None:intergenic	30.0%
TATGGTACTAATTCGTTCTT+AGG	-	chr8_2:53750935-53750954	Msa1255290:CDS	30.0%
GTGGTTATTATAATGTACAG+TGG	-	chr8_2:53751091-53751110	Msa1255290:intron	30.0%
TATGGATCTCCTGATATATT+TGG	+	chr8_2:53751435-53751454	None:intergenic	30.0%
TGAATATGTTCAAAAGGGTT+CGG	-	chr8_2:53751634-53751653	Msa1255290:intron	30.0%
ATTCTATACCCTTGAAACTT+CGG	+	chr8_2:53751949-53751968	None:intergenic	30.0%
TTTATGTGAGTAACACACTT+TGG	+	chr8_2:53752286-53752305	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	53749815	53755635	53749815	ID=Msa1255290;Name=Msa1255290
chr8_2	mRNA	53749815	53755635	53749815	ID=Msa1255290-mRNA-1;Parent=Msa1255290;Name=Msa1255290-mRNA-1;_AED=0.23;_eAED=0.23;_QI=141\|1\|1\|1\|0.9\|0.81\|11\|482\|504
chr8_2	exon	53749815	53750263	53749815	ID=Msa1255290-mRNA-1:exon:16689;Parent=Msa1255290-mRNA-1
chr8_2	exon	53750339	53751083	53750339	ID=Msa1255290-mRNA-1:exon:16688;Parent=Msa1255290-mRNA-1
chr8_2	exon	53751223	53751291	53751223	ID=Msa1255290-mRNA-1:exon:16687;Parent=Msa1255290-mRNA-1
chr8_2	exon	53752008	53752170	53752008	ID=Msa1255290-mRNA-1:exon:16686;Parent=Msa1255290-mRNA-1
chr8_2	exon	53752264	53752345	53752264	ID=Msa1255290-mRNA-1:exon:16685;Parent=Msa1255290-mRNA-1
chr8_2	exon	53753827	53753889	53753827	ID=Msa1255290-mRNA-1:exon:16684;Parent=Msa1255290-mRNA-1
chr8_2	exon	53753971	53754035	53753971	ID=Msa1255290-mRNA-1:exon:16683;Parent=Msa1255290-mRNA-1
chr8_2	exon	53754121	53754196	53754121	ID=Msa1255290-mRNA-1:exon:16682;Parent=Msa1255290-mRNA-1
chr8_2	exon	53754923	53755002	53754923	ID=Msa1255290-mRNA-1:exon:16681;Parent=Msa1255290-mRNA-1
chr8_2	exon	53755108	53755222	53755108	ID=Msa1255290-mRNA-1:exon:16680;Parent=Msa1255290-mRNA-1
chr8_2	exon	53755405	53755635	53755405	ID=Msa1255290-mRNA-1:exon:16679;Parent=Msa1255290-mRNA-1
chr8_2	five_prime_UTR	53755495	53755635	53755495	ID=Msa1255290-mRNA-1:five_prime_utr;Parent=Msa1255290-mRNA-1
chr8_2	CDS	53755405	53755494	53755405	ID=Msa1255290-mRNA-1:cds;Parent=Msa1255290-mRNA-1
chr8_2	CDS	53755108	53755222	53755108	ID=Msa1255290-mRNA-1:cds;Parent=Msa1255290-mRNA-1
chr8_2	CDS	53754923	53755002	53754923	ID=Msa1255290-mRNA-1:cds;Parent=Msa1255290-mRNA-1
chr8_2	CDS	53754121	53754196	53754121	ID=Msa1255290-mRNA-1:cds;Parent=Msa1255290-mRNA-1
chr8_2	CDS	53753971	53754035	53753971	ID=Msa1255290-mRNA-1:cds;Parent=Msa1255290-mRNA-1
chr8_2	CDS	53753827	53753889	53753827	ID=Msa1255290-mRNA-1:cds;Parent=Msa1255290-mRNA-1
chr8_2	CDS	53752264	53752345	53752264	ID=Msa1255290-mRNA-1:cds;Parent=Msa1255290-mRNA-1
chr8_2	CDS	53752008	53752170	53752008	ID=Msa1255290-mRNA-1:cds;Parent=Msa1255290-mRNA-1
chr8_2	CDS	53751223	53751291	53751223	ID=Msa1255290-mRNA-1:cds;Parent=Msa1255290-mRNA-1
chr8_2	CDS	53750372	53751083	53750372	ID=Msa1255290-mRNA-1:cds;Parent=Msa1255290-mRNA-1
chr8_2	three_prime_UTR	53750339	53750371	53750339	ID=Msa1255290-mRNA-1:three_prime_utr;Parent=Msa1255290-mRNA-1
chr8_2	three_prime_UTR	53749815	53750263	53749815	ID=Msa1255290-mRNA-1:three_prime_utr;Parent=Msa1255290-mRNA-1

Gene Sequence

>Msa1255290

ATGGAAGATCCTCTTCTGCGCAACCAAAACGCCGCCGTTCAAGCTCGTACCAAAGCTCAGAATCGCGCCAACGTCCTTCAACTCAAACTGATTGGACAGAGTCATCCAACTGGATTGACTGCGAATTTGTTGAAGCTGTTTGAGCCTAGGCCTCCGTTGGAGTATAAACCTCCACCGGAGAAACGAAAATGTCCTCCGTTAACAGGGATGGCGCAATTTGTGAGTAAATTTGCTGAACCTGGTGAACCGGAATATTCTCCGCCTGTGCCAGTAGTTGAAACTCCTGCAGAAAGAAGGGCAAGAGTACACAAGTTAAGACTGGAGAAGGGAGCTGCGAAAGCTGCTGAGGAGCTTGAGAAATATGATCCACATAATGATCCAAATATATCAGGAGATCCATACAAGACTTTATTTGTGGCCAGACTTAGTTATGAGACTACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTGCAATCAAACGGGTTCGGCTGGTTACTGATACTGAGTCAAATAAGCCCAGGGGTTACGCATTCATTGAATACCTGCACACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGTAGAAGGGTGCTTGTGGATGTTGAACGTGGGAGAACTGTTCCAAACTGGCGACCCCGCCGTCTAGGTGGTGGGCTTGGTACTACTAGAGTGGGGGGTGATGAAGTTAATCAGCGACATTCAGGAAGGGAGCAACAGCAATCAGGACCTTCTCGTTCCGAAGAACCCAGAGTACGGGAGGATCGACATGCTGATCGGGACAGAGAGAAGTCACGTGAAAGAGGTAAGGACAGAGATAGAGAACGAGAGCGATCACGTGAACGATCTAGCGATAAGGCTAGGGATCGGGATCGTGATCATAGAGAGGATAGGCACCACAGAGACCGAGACCGGGATAGGAATAGGGACAGGGACCGAGGTAAGGAAAGGGACAGAGAAAGAGACCGCGGACGTGATCGAGAGAGAGGACGTGATCGCGATCGTGGTCGGGAACGTGACCGTGACAGAGAGAGGGATCATGAACGGGATGTAGAACATGATCGTTATCGTGAAAAGGACAAGGATTATGAAGTTGGGGAAACTGATCGGGGACGATCTCATGATAGGGGTACTGATTATGATCATGTTGAATCTAAACATGAGAAGGAACCTCATGGTGAAATAGAGCGGGACTATGAACCTGATGATCATCGTGGGCGGTACAAAGAACCTGGGCATGGACATAGGCATGCAGATCCTGAACATGATCCTGATCACTATAACCATTATGAGCATCAGAGAGGACGGGGGCAGTATGATGAAGGAGATGACCGTGGTGATTACAATCAATATCCTGATCATGCTAAGATGGAAGATGACCATCACACTGAACGAGCAAAATCTAAATCGCGTGATAGGGACAGAAACCGTGATAAGGACCATGATTATCGTCGCTCAGAGAGGTCTCATTCTCGAGAATATGATTACTAG

Protein sequence

>Msa1255290

MEDPLLRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDTESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREDRHADRDREKSRERGKDRDRERERSRERSSDKARDRDRDHREDRHHRDRDRDRNRDRDRGKERDRERDRGRDRERGRDRDRGRERDRDRERDHERDVEHDRYREKDKDYEVGETDRGRSHDRGTDYDHVESKHEKEPHGEIERDYEPDDHRGRYKEPGHGHRHADPEHDPDHYNHYEHQRGRGQYDEGDDRGDYNQYPDHAKMEDDHHTERAKSKSRDRDRNRDKDHDYRRSERSHSREYDY*