AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1389850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1389850 MtrunA17_Chr5g0441411 97.500 120 2 1 1 119 1 120 4.04e-81 233
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1389850 AT5G12240.2 46.667 120 56 4 1 118 1 114 3.55e-25 92.0

Find 46 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAACTAACAGATTCATTT+TGG 0.150883 tig0021301:-58975 Msa1389850:intron
TTTAGATGTTGCTCGAAAAT+TGG 0.248254 tig0021301:-57643 Msa1389850:CDS
GCTTGTAACTCTGCAATCTT+AGG 0.301055 tig0021301:+57611 Msa1389850:intergenic
AAAGTCAGAGGCTGCTAAAA+AGG 0.332380 tig0021301:-58944 Msa1389850:intron
TTCATCCATGGCTATGGTTA+TGG 0.367364 tig0021301:+61294 Msa1389850:intergenic
AGATCCAGGTGTTAATTGTC+TGG 0.439476 tig0021301:+59299 Msa1389850:intergenic
TCCAATACAATCCCTAGTCT+TGG 0.443977 tig0021301:+57485 Msa1389850:intergenic
TTAACACCTGGATCTGGATC+TGG 0.464092 tig0021301:-59291 Msa1389850:CDS
TGTCTCAATATCAATTTACA+TGG 0.472075 tig0021301:+57351 Msa1389850:intergenic
AACGAACAGAAGGGAAGAGT+TGG 0.472674 tig0021301:+61251 Msa1389850:intergenic
AGACAATTAACACCTGGATC+TGG 0.479178 tig0021301:-59297 Msa1389850:CDS
CATGGCTATGGTTATGGCTA+TGG 0.488300 tig0021301:+61300 Msa1389850:intergenic
TCCAAGACTAGGGATTGTAT+TGG 0.504722 tig0021301:-57486 Msa1389850:three_prime_UTR
GCAGATCCAGATCCAGATCC+AGG 0.505288 tig0021301:+59285 Msa1389850:intergenic
TTCAGCTTCATCCATGGCTA+TGG 0.505306 tig0021301:+61288 Msa1389850:intergenic
TGCATGGAATGAAAAGGATA+AGG 0.508203 tig0021301:-59158 Msa1389850:CDS
TTTGCGAACGTGAATCTTGA+CGG 0.510535 tig0021301:+61337 Msa1389850:intergenic
TATCACTGCAGCTAAATGAA+TGG 0.519982 tig0021301:-59186 Msa1389850:intron
TTGAGTAGTAAAGTTGGTGT+GGG 0.522255 tig0021301:-57511 Msa1389850:three_prime_UTR
TATAATGTATAATGCAAATG+TGG 0.522293 tig0021301:-57458 Msa1389850:three_prime_UTR
TTGAAATTCAGCTTCATCCA+TGG 0.527393 tig0021301:+61282 Msa1389850:intergenic
ATCTGGATCTGCACAGGAAG+AGG 0.529978 tig0021301:-59274 Msa1389850:intron
TTGCGAACGTGAATCTTGAC+GGG 0.530131 tig0021301:+61338 Msa1389850:intergenic
ATCTGGATCTGGATCTGCAC+AGG 0.538020 tig0021301:-59280 Msa1389850:CDS
TGGTGTGGTTTATTCTGCAA+AGG 0.540097 tig0021301:-61389 Msa1389850:five_prime_UTR
TTTGAGTAGTAAAGTTGGTG+TGG 0.541565 tig0021301:-57512 Msa1389850:three_prime_UTR
GTGGTTTATTCTGCAAAGGT+TGG 0.553043 tig0021301:-61385 Msa1389850:five_prime_UTR
GCATGATGCATGGAATGAAA+AGG 0.553411 tig0021301:-59164 Msa1389850:CDS
TGGTGTGGGAATCCAAGACT+AGG 0.561188 tig0021301:-57497 Msa1389850:three_prime_UTR
GTCAAGATTCACGTTCGCAA+AGG 0.565582 tig0021301:-61335 Msa1389850:five_prime_UTR
TAATCGCGAGAACGAACAGA+AGG 0.580979 tig0021301:+61241 Msa1389850:intergenic
CAGAAGGGAAGAGTTGGAGA+AGG 0.581359 tig0021301:+61257 Msa1389850:intergenic
GTGTATTTGCAGCGGTGGTG+TGG 0.582985 tig0021301:-61404 Msa1389850:five_prime_UTR
GTCTCAATATCAATTTACAT+GGG 0.588731 tig0021301:+57352 Msa1389850:intergenic
CATAGCCATAACCATAGCCA+TGG 0.601899 tig0021301:-61299 Msa1389850:exon
TTGGAACAAGCTAAAGTCAG+AGG 0.617833 tig0021301:-58956 Msa1389850:CDS
ACAGGTTGGTACAGAAGAAG+CGG 0.620709 tig0021301:-58074 Msa1389850:intron
GGTGTGGGAATCCAAGACTA+GGG 0.626844 tig0021301:-57496 Msa1389850:three_prime_UTR
TAAATGAATGGCATGATGCA+TGG 0.637004 tig0021301:-59174 Msa1389850:CDS
AATCGCGAGAACGAACAGAA+GGG 0.637609 tig0021301:+61242 Msa1389850:intergenic
ATAATGTATAATGCAAATGT+GGG 0.638049 tig0021301:-57457 Msa1389850:three_prime_UTR
TCATCCAGACAATTAACACC+TGG 0.646730 tig0021301:-59303 Msa1389850:CDS
GACATTGCAACTAACTGTTG+AGG 0.652421 tig0021301:+57395 Msa1389850:intergenic
TCTGTGTGTATTTGCAGCGG+TGG 0.665559 tig0021301:-61409 Msa1389850:five_prime_UTR
AATCAAGGAATCAACAAACA+TGG 0.667146 tig0021301:-59127 Msa1389850:intron
GTGTCTGTGTGTATTTGCAG+CGG 0.687144 tig0021301:-61412 Msa1389850:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATAATTAAGAACA+AGG + tig0021301:59902-59921 Msa1389850:intergenic 10.0%
!! TTGTTCTTAATTATTAAAAA+TGG - tig0021301:59901-59920 Msa1389850:intron 10.0%
!!! TTTTATTCATTTATATTTTC+TGG + tig0021301:60993-61012 Msa1389850:intergenic 10.0%
!! ATATAAATGAATAAAATTGA+TGG - tig0021301:60997-61016 Msa1389850:intron 10.0%
!!! TAAAACAATAAAAGAATTTT+TGG + tig0021301:61074-61093 Msa1389850:intergenic 10.0%
!!! TTTTATTGTTTTATTTCTTT+AGG - tig0021301:61081-61100 Msa1389850:intron 10.0%
!!! AAAAACAAAGTTTTAGAAAT+GGG + tig0021301:57727-57746 Msa1389850:intergenic 15.0%
!!! TAAAAACAAAGTTTTAGAAA+TGG + tig0021301:57728-57747 Msa1389850:intergenic 15.0%
!!! TTTTCTCATACTATTAATAT+TGG - tig0021301:58761-58780 Msa1389850:intron 15.0%
!!! TTAAAGCAAAATTCAAATTT+TGG - tig0021301:59340-59359 Msa1389850:intron 15.0%
!! ATAGCAACATTATAAATTAT+AGG - tig0021301:59994-60013 Msa1389850:intron 15.0%
!!! GTTTAAATGATTATCATTTT+GGG - tig0021301:60757-60776 Msa1389850:intron 15.0%
!!! AAATGAACATTTTGTTTTTT+AGG - tig0021301:60864-60883 Msa1389850:intron 15.0%
!!! AATGAACATTTTGTTTTTTA+GGG - tig0021301:60865-60884 Msa1389850:intron 15.0%
!!! AGTTGAAGGAATTTATTTTA+TGG - tig0021301:58078-58097 Msa1389850:intron 20.0%
!! AGTACTTATAGTATAATAGA+TGG - tig0021301:58218-58237 Msa1389850:intron 20.0%
!!! TAATATCTTGTAGTTTTTCT+AGG + tig0021301:58354-58373 Msa1389850:intergenic 20.0%
!! ACTACAAGATATTAATGATT+TGG - tig0021301:58360-58379 Msa1389850:intron 20.0%
!!! TAATGATTTGGATAGAAATA+TGG - tig0021301:58372-58391 Msa1389850:intron 20.0%
!! CAATGATGATATAACTTTAT+GGG - tig0021301:58864-58883 Msa1389850:intron 20.0%
!! AATGATGATATAACTTTATG+GGG - tig0021301:58865-58884 Msa1389850:intron 20.0%
!! TTATAATTATTTGTTCGTTG+TGG - tig0021301:58903-58922 Msa1389850:intron 20.0%
!! TATAATTATTTGTTCGTTGT+GGG - tig0021301:58904-58923 Msa1389850:intron 20.0%
!!! AGATTCAAAAACTTTTACTT+TGG + tig0021301:58939-58958 Msa1389850:intergenic 20.0%
!!! TTAAATAGTTTTAGACTAGT+GGG + tig0021301:59324-59343 Msa1389850:intergenic 20.0%
!!! TTTAAATAGTTTTAGACTAG+TGG + tig0021301:59325-59344 Msa1389850:intergenic 20.0%
!! ACTTAACATGATTCTATAAA+TGG - tig0021301:59378-59397 Msa1389850:intron 20.0%
!! CTTAACATGATTCTATAAAT+GGG - tig0021301:59379-59398 Msa1389850:intron 20.0%
!! AAATATAACAGTTGTCAATT+AGG + tig0021301:59419-59438 Msa1389850:intergenic 20.0%
!! ATAATTAAGAACAAGGATAA+TGG + tig0021301:59895-59914 Msa1389850:intergenic 20.0%
!! AAATCAAAGTAATTCAAACT+GGG + tig0021301:60142-60161 Msa1389850:intergenic 20.0%
!! AAAATCAAAGTAATTCAAAC+TGG + tig0021301:60143-60162 Msa1389850:intergenic 20.0%
!! TTGAAAGTTTCATTTAATGA+TGG - tig0021301:60343-60362 Msa1389850:intron 20.0%
!!! CGTTTAAATGATTATCATTT+TGG - tig0021301:60756-60775 Msa1389850:intron 20.0%
!!! TTCTTTCATAGAAAGTATTA+TGG - tig0021301:60782-60801 Msa1389850:intron 20.0%
!! ATTTATAGAAAGTAGTTTCT+TGG - tig0021301:60819-60838 Msa1389850:intron 20.0%
!!! ATGAACATTTTGTTTTTTAG+GGG - tig0021301:60866-60885 Msa1389850:intron 20.0%
!!! TTATATTTTCTGGAATTTCA+TGG + tig0021301:60983-61002 Msa1389850:intergenic 20.0%
!! TATAATGTATAATGCAAATG+TGG - tig0021301:61305-61324 Msa1389850:five_prime_UTR 20.0%
!! ATAATGTATAATGCAAATGT+GGG - tig0021301:61306-61325 Msa1389850:five_prime_UTR 20.0%
! AATCGAAACTTTAAACAACA+GGG + tig0021301:57651-57670 Msa1389850:intergenic 25.0%
! AAATCGAAACTTTAAACAAC+AGG + tig0021301:57652-57671 Msa1389850:intergenic 25.0%
!!! AGACGAGTTTTATATGAATT+AGG - tig0021301:57782-57801 Msa1389850:intron 25.0%
!!! AGGTTTATTTGATGATGATA+AGG - tig0021301:57802-57821 Msa1389850:intron 25.0%
!! TTTTATGAGATAGTGCTTAT+TGG - tig0021301:57884-57903 Msa1389850:intron 25.0%
! TTTATGAGATAGTGCTTATT+GGG - tig0021301:57885-57904 Msa1389850:intron 25.0%
! AAAGAAAAGTTATGAACAGA+AGG + tig0021301:57955-57974 Msa1389850:intergenic 25.0%
! TAAATTCCTTCAACTTAAGT+GGG + tig0021301:58073-58092 Msa1389850:intergenic 25.0%
! ATAAATTCCTTCAACTTAAG+TGG + tig0021301:58074-58093 Msa1389850:intergenic 25.0%
! ACTTATAGTATAATAGATGG+TGG - tig0021301:58221-58240 Msa1389850:intron 25.0%
! TGGTACTTAATAGAACATTA+TGG - tig0021301:58392-58411 Msa1389850:intron 25.0%
!! TAGTGTTATTAGTTTCAACT+AGG - tig0021301:58477-58496 Msa1389850:intron 25.0%
!! TGAAGTAGTATTATTGATTG+CGG - tig0021301:58539-58558 Msa1389850:intron 25.0%
! GCAATGATGATATAACTTTA+TGG - tig0021301:58863-58882 Msa1389850:intron 25.0%
! ATAATTATTTGTTCGTTGTG+GGG - tig0021301:58905-58924 Msa1389850:intron 25.0%
! GTTAAAAAACAGAAAGAAAG+AGG + tig0021301:59047-59066 Msa1389850:intergenic 25.0%
! AAAACAAAGTGACAATTCTA+TGG + tig0021301:59135-59154 Msa1389850:intergenic 25.0%
!!! TTGTTTTTGAGTTTCATTTG+AGG - tig0021301:59148-59167 Msa1389850:CDS 25.0%
! CATCATATTACATATGCAAA+CGG + tig0021301:59204-59223 Msa1389850:intergenic 25.0%
!!! TAAATAGTTTTAGACTAGTG+GGG + tig0021301:59323-59342 Msa1389850:intergenic 25.0%
! ATTGACAACTGTTATATTTC+AGG - tig0021301:59420-59439 Msa1389850:intron 25.0%
!! GATGTATTTGTTGAACAATA+AGG + tig0021301:59674-59693 Msa1389850:intergenic 25.0%
!! ATTTTGTTACAACAATCAAC+TGG - tig0021301:59725-59744 Msa1389850:intron 25.0%
!! AAAATGAATCTGTTAGTTTG+GGG + tig0021301:59789-59808 Msa1389850:intergenic 25.0%
!! CAAAATGAATCTGTTAGTTT+GGG + tig0021301:59790-59809 Msa1389850:intergenic 25.0%
! AACATAGCACATGTTTATAT+TGG - tig0021301:59924-59943 Msa1389850:intron 25.0%
! TGTAAGGAAAAAGTAAACAA+GGG + tig0021301:59963-59982 Msa1389850:intergenic 25.0%
! ATGTAAGGAAAAAGTAAACA+AGG + tig0021301:59964-59983 Msa1389850:intergenic 25.0%
!! TAATCAGCTTCAAACTTTTA+AGG + tig0021301:60026-60045 Msa1389850:intergenic 25.0%
!!! GTTGATGATTTTGTAAAGAT+AGG - tig0021301:60374-60393 Msa1389850:intron 25.0%
! ATTGGTTATAATGTTTCAAC+AGG - tig0021301:60671-60690 Msa1389850:intron 25.0%
!! AAAGAAGTCTTTCATTGATT+AGG - tig0021301:60897-60916 Msa1389850:intron 25.0%
! GTCTCAATATCAATTTACAT+GGG + tig0021301:61414-61433 Msa1389850:intergenic 25.0%
! TGTCTCAATATCAATTTACA+TGG + tig0021301:61415-61434 Msa1389850:intergenic 25.0%
!!! CCATTCTGTTTTATTTTTGG+TGG + tig0021301:57328-57347 Msa1080540:intergenic 30.0%
CCACCAAAAATAAAACAGAA+TGG - tig0021301:57325-57344 Msa1389850:three_prime_UTR 30.0%
!!! ACGCCATTCTGTTTTATTTT+TGG + tig0021301:57331-57350 Msa1389850:intergenic 30.0%
! TCTAGGGTTTAGAAAGTTAT+AGG - tig0021301:57577-57596 Msa1389850:three_prime_UTR 30.0%
! ATACCATGTTGTGAATTTTG+TGG - tig0021301:57677-57696 Msa1389850:intron 30.0%
AAACCACAAAATTCACAACA+TGG + tig0021301:57683-57702 Msa1389850:intergenic 30.0%
!! ATTTGATGATGATAAGGATG+TGG - tig0021301:57808-57827 Msa1389850:intron 30.0%
TTATGGTATAGCTATAAGAC+TGG - tig0021301:58095-58114 Msa1389850:intron 30.0%
AGACAGGATAAGATTAGAAA+TGG - tig0021301:58171-58190 Msa1389850:intron 30.0%
AAACTCGACTTAAATGGTTT+CGG - tig0021301:58244-58263 Msa1389850:intron 30.0%
! GACATGTGAATTTTGTAGTA+AGG - tig0021301:58280-58299 Msa1389850:intron 30.0%
GGACTTATAGAATTACAACA+TGG + tig0021301:58573-58592 Msa1389850:intergenic 30.0%
CAGCATATAGAAATTTGTGA+AGG + tig0021301:58634-58653 Msa1389850:intergenic 30.0%
! TGTTTTCAAAAAATCCGCTA+TGG - tig0021301:58652-58671 Msa1389850:intron 30.0%
CATTGCTTCATAGTTTATAG+AGG - tig0021301:58829-58848 Msa1389850:intron 30.0%
ATATAACTTTATGGGGAACT+TGG - tig0021301:58872-58891 Msa1389850:intron 30.0%
TAATTATTTGTTCGTTGTGG+GGG - tig0021301:58906-58925 Msa1389850:intron 30.0%
TACTGAGTTTGGATTATGTT+GGG - tig0021301:59083-59102 Msa1389850:intron 30.0%
GACAAATTGTAGCATTCATT+AGG + tig0021301:59113-59132 Msa1389850:intergenic 30.0%
GTTTCATTTGAGGAAAAGAT+TGG - tig0021301:59158-59177 Msa1389850:CDS 30.0%
TATGCAAACGGAAAAAACAT+GGG + tig0021301:59192-59211 Msa1389850:intergenic 30.0%
ATATGCAAACGGAAAAAACA+TGG + tig0021301:59193-59212 Msa1389850:intergenic 30.0%
CGTTTGCATATGTAATATGA+TGG - tig0021301:59202-59221 Msa1389850:intron 30.0%
! GGAAGACATTAGCATTTTAT+AGG - tig0021301:59223-59242 Msa1389850:intron 30.0%
!! GATAAGGATTTTGAGAATCA+AGG - tig0021301:59621-59640 Msa1389850:intron 30.0%
AATCAAGGAATCAACAAACA+TGG - tig0021301:59636-59655 Msa1389850:intron 30.0%
CCAAAATGAATCTGTTAGTT+TGG + tig0021301:59791-59810 Msa1389850:intergenic 30.0%
! CCAAACTAACAGATTCATTT+TGG - tig0021301:59788-59807 Msa1389850:intron 30.0%
GTATGCATGTAAAAATAAGC+AGG + tig0021301:59858-59877 Msa1389850:intergenic 30.0%
GCTATAGAGATTGAAATGTA+AGG + tig0021301:59979-59998 Msa1389850:intergenic 30.0%
AAAGTAATTCAAACTGGGTT+TGG + tig0021301:60137-60156 Msa1389850:intergenic 30.0%
ATAAAAATTCTTGTCCCATC+TGG - tig0021301:60231-60250 Msa1389850:intron 30.0%
!!! ATTTTTTTCACATGCCAGAT+GGG + tig0021301:60248-60267 Msa1389850:intergenic 30.0%
TCTCTTTATCATGTTTGTGA+AGG - tig0021301:60473-60492 Msa1389850:intron 30.0%
ATTTATGCGTGTGACAATTT+AGG + tig0021301:60509-60528 Msa1389850:intergenic 30.0%
AAATTGTCACACGCATAAAT+AGG - tig0021301:60509-60528 Msa1389850:intron 30.0%
AATTGTCACACGCATAAATA+GGG - tig0021301:60510-60529 Msa1389850:intron 30.0%
GTTATAATGTTTCAACAGGT+TGG - tig0021301:60675-60694 Msa1389850:intron 30.0%
TTTAGATGTTGCTCGAAAAT+TGG - tig0021301:61120-61139 Msa1389850:intron 30.0%
!! GACATTTTGAGTAGTAAAGT+TGG - tig0021301:61246-61265 Msa1389850:CDS 30.0%
TTGAAATTCAGCTTCATCCA+TGG + tig0021301:57484-57503 Msa1389850:intergenic 35.0%
!!! TGTGGTATCAGTTTTGAAGT+AGG - tig0021301:57826-57845 Msa1389850:intron 35.0%
!!! GTGGTATCAGTTTTGAAGTA+GGG - tig0021301:57827-57846 Msa1389850:intron 35.0%
!!! TGGTATCAGTTTTGAAGTAG+GGG - tig0021301:57828-57847 Msa1389850:intron 35.0%
ACGTAGAAACAAAAGGAGTA+GGG - tig0021301:58012-58031 Msa1389850:intron 35.0%
!! AAAGTACCCACTTAAGTTGA+AGG - tig0021301:58064-58083 Msa1389850:CDS 35.0%
CAACATTAGAAAGAGAGTCA+GGG - tig0021301:58194-58213 Msa1389850:intron 35.0%
! AGTAAGGAGAGTATATCAGA+TGG - tig0021301:58296-58315 Msa1389850:intron 35.0%
ATGGCGTTATTTGATTCATG+CGG - tig0021301:58411-58430 Msa1389850:intron 35.0%
! GTAGTATTATTGATTGCGGA+TGG - tig0021301:58543-58562 Msa1389850:intron 35.0%
! TTGTCAAGTATTGTCCATAG+CGG + tig0021301:58669-58688 Msa1389850:intergenic 35.0%
! ATTGGTTTAGTCCTTAGTGT+CGG - tig0021301:58779-58798 Msa1389850:intron 35.0%
CAAATATATCACCGACACTA+AGG + tig0021301:58793-58812 Msa1389850:intergenic 35.0%
TATGACATGATGTTCTGTGT+GGG - tig0021301:58960-58979 Msa1389850:CDS 35.0%
! GAAAGAAAGAGGATTTTCCA+GGG + tig0021301:59036-59055 Msa1389850:intergenic 35.0%
! AGAAAGAAAGAGGATTTTCC+AGG + tig0021301:59037-59056 Msa1389850:intergenic 35.0%
ATCCAAACTCAGTACAAAGA+AGG + tig0021301:59077-59096 Msa1389850:intergenic 35.0%
GTACTGAGTTTGGATTATGT+TGG - tig0021301:59082-59101 Msa1389850:intron 35.0%
TATCACTGCAGCTAAATGAA+TGG - tig0021301:59577-59596 Msa1389850:intron 35.0%
TAAATGAATGGCATGATGCA+TGG - tig0021301:59589-59608 Msa1389850:intron 35.0%
TGCATGGAATGAAAAGGATA+AGG - tig0021301:59605-59624 Msa1389850:intron 35.0%
!!! CATTTTTTTCACATGCCAGA+TGG + tig0021301:60249-60268 Msa1389850:intergenic 35.0%
AGGGATAAAAGATAAGTGAG+AGG - tig0021301:60529-60548 Msa1389850:intron 35.0%
GGGATAAAAGATAAGTGAGA+GGG - tig0021301:60530-60549 Msa1389850:intron 35.0%
GGATAAAAGATAAGTGAGAG+GGG - tig0021301:60531-60550 Msa1389850:intron 35.0%
!! TTTGAGTAGTAAAGTTGGTG+TGG - tig0021301:61251-61270 Msa1389850:CDS 35.0%
!! TTGAGTAGTAAAGTTGGTGT+GGG - tig0021301:61252-61271 Msa1389850:CDS 35.0%
! AATCATTACATGTTTTCCCC+AGG - tig0021301:61435-61454 Msa1389850:five_prime_UTR 35.0%
TGGTGTGGTTTATTCTGCAA+AGG - tig0021301:57374-57393 Msa1389850:three_prime_UTR 40.0%
GTGGTTTATTCTGCAAAGGT+TGG - tig0021301:57378-57397 Msa1389850:three_prime_UTR 40.0%
TTTGCGAACGTGAATCTTGA+CGG + tig0021301:57429-57448 Msa1389850:intergenic 40.0%
TTCATCCATGGCTATGGTTA+TGG + tig0021301:57472-57491 Msa1389850:intergenic 40.0%
TTCCCACTGTTTGTGTTTCT+AGG - tig0021301:57560-57579 Msa1389850:three_prime_UTR 40.0%
! TCCCACTGTTTGTGTTTCTA+GGG - tig0021301:57561-57580 Msa1389850:three_prime_UTR 40.0%
ACCCTAGAAACACAAACAGT+GGG + tig0021301:57565-57584 Msa1389850:intergenic 40.0%
AACCCTAGAAACACAAACAG+TGG + tig0021301:57566-57585 Msa1389850:intergenic 40.0%
AGAAGGATTCGAAACTGCAT+GGG + tig0021301:57938-57957 Msa1389850:intergenic 40.0%
!! TTGTTTCTACGTCGTCTTGT+AGG + tig0021301:58004-58023 Msa1389850:intergenic 40.0%
CAAGACGACGTAGAAACAAA+AGG - tig0021301:58005-58024 Msa1389850:intron 40.0%
GACGTAGAAACAAAAGGAGT+AGG - tig0021301:58011-58030 Msa1389850:intron 40.0%
CGTATCAGATAAGACACATG+CGG + tig0021301:58044-58063 Msa1389850:intergenic 40.0%
!! AGGATGTTGTGTTTGTTGTG+TGG - tig0021301:58141-58160 Msa1389850:intron 40.0%
GCAACATTAGAAAGAGAGTC+AGG - tig0021301:58193-58212 Msa1389850:intron 40.0%
TGGTGGAAACTCGACTTAAA+TGG - tig0021301:58238-58257 Msa1389850:intron 40.0%
! AAGGAGAGTATATCAGATGG+AGG - tig0021301:58299-58318 Msa1389850:intron 40.0%
! AGGAGAGTATATCAGATGGA+GGG - tig0021301:58300-58319 Msa1389850:intron 40.0%
AGTCCAATCACTAGATCTAG+AGG - tig0021301:58324-58343 Msa1389850:intron 40.0%
CTTCCTCTAGATCTAGTGAT+TGG + tig0021301:58330-58349 Msa1389850:intergenic 40.0%
! TTTTATGGCAGCTCAAATGG+CGG + tig0021301:58594-58613 Msa1389850:intergenic 40.0%
ACAACACTAGATTGAAGTGC+CGG - tig0021301:58685-58704 Msa1389850:intron 40.0%
TGTTAGTGTCATGTCGGTAT+TGG + tig0021301:58715-58734 Msa1389850:intergenic 40.0%
CACATGTGTTAGTGTCATGT+CGG + tig0021301:58721-58740 Msa1389850:intergenic 40.0%
GTATGACATGATGTTCTGTG+TGG - tig0021301:58959-58978 Msa1389850:CDS 40.0%
ATGACATGATGTTCTGTGTG+GGG - tig0021301:58961-58980 Msa1389850:CDS 40.0%
CTCCTTCTTTGTACTGAGTT+TGG - tig0021301:59072-59091 Msa1389850:intron 40.0%
TACCTTAAAAGCCTGCACAA+TGG - tig0021301:59253-59272 Msa1389850:intron 40.0%
CTATAAATGGGATTACGCCT+TGG - tig0021301:59391-59410 Msa1389850:intron 40.0%
TCATCCAGACAATTAACACC+TGG - tig0021301:59460-59479 Msa1389850:intron 40.0%
AGATCCAGGTGTTAATTGTC+TGG + tig0021301:59467-59486 Msa1389850:intergenic 40.0%
AGACAATTAACACCTGGATC+TGG - tig0021301:59466-59485 Msa1389850:intron 40.0%
GCATGATGCATGGAATGAAA+AGG - tig0021301:59599-59618 Msa1389850:intron 40.0%
TTGGAACAAGCTAAAGTCAG+AGG - tig0021301:59807-59826 Msa1389850:intron 40.0%
AAAGTCAGAGGCTGCTAAAA+AGG - tig0021301:59819-59838 Msa1389850:intron 40.0%
! ATAGGCGAGATTGTTGTTGT+AGG - tig0021301:60392-60411 Msa1389850:intron 40.0%
! CTAGGGTGTTATAACTGTGA+TGG - tig0021301:60569-60588 Msa1389850:intron 40.0%
TAGAATGACACTACGCTCAT+TGG - tig0021301:60653-60672 Msa1389850:intron 40.0%
! AGAAGCGGAAAGATTTTGCA+AGG - tig0021301:60704-60723 Msa1389850:intron 40.0%
GCTTGTAACTCTGCAATCTT+AGG + tig0021301:61155-61174 Msa1389850:intergenic 40.0%
TCCAAGACTAGGGATTGTAT+TGG - tig0021301:61277-61296 Msa1389850:CDS 40.0%
TCCAATACAATCCCTAGTCT+TGG + tig0021301:61281-61300 Msa1389850:intergenic 40.0%
GACATTGCAACTAACTGTTG+AGG + tig0021301:61371-61390 Msa1389850:intergenic 40.0%
GTGTCTGTGTGTATTTGCAG+CGG - tig0021301:57351-57370 Msa1389850:three_prime_UTR 45.0%
TTGCGAACGTGAATCTTGAC+GGG + tig0021301:57428-57447 Msa1389850:intergenic 45.0%
GTCAAGATTCACGTTCGCAA+AGG - tig0021301:57428-57447 Msa1389850:three_prime_UTR 45.0%
CATGGCTATGGTTATGGCTA+TGG + tig0021301:57466-57485 Msa1389850:intergenic 45.0%
CATAGCCATAACCATAGCCA+TGG - tig0021301:57464-57483 Msa1389850:three_prime_UTR 45.0%
TTCAGCTTCATCCATGGCTA+TGG + tig0021301:57478-57497 Msa1389850:intergenic 45.0%
AACGAACAGAAGGGAAGAGT+TGG + tig0021301:57515-57534 Msa1389850:intergenic 45.0%
AATCGCGAGAACGAACAGAA+GGG + tig0021301:57524-57543 Msa1389850:intergenic 45.0%
TAATCGCGAGAACGAACAGA+AGG + tig0021301:57525-57544 Msa1389850:intergenic 45.0%
GGCATGACTAGAAATCACGT+GGG - tig0021301:57906-57925 Msa1389850:intron 45.0%
CAGAAGGATTCGAAACTGCA+TGG + tig0021301:57939-57958 Msa1389850:intergenic 45.0%
TGTTGTACGAGACAGAGATG+AGG - tig0021301:58121-58140 Msa1389850:intron 45.0%
GTTGTGTGGTAAGACTAGAC+AGG - tig0021301:58155-58174 Msa1389850:intron 45.0%
! GGAGAGTATATCAGATGGAG+GGG - tig0021301:58301-58320 Msa1389850:intron 45.0%
! AAGCCTTATCCCACTAAGTC+GGG + tig0021301:58441-58460 Msa1389850:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+CGG + tig0021301:58442-58461 Msa1389850:intergenic 45.0%
! GCGTTTTATGGCAGCTCAAA+TGG + tig0021301:58597-58616 Msa1389850:intergenic 45.0%
! CAACACTAGATTGAAGTGCC+GGG - tig0021301:58686-58705 Msa1389850:intron 45.0%
CGACATGACACTAACACATG+TGG - tig0021301:58719-58738 Msa1389850:intron 45.0%
TGACATGATGTTCTGTGTGG+GGG - tig0021301:58962-58981 Msa1389850:CDS 45.0%
GTCAATGATTGACAGGTGCT+AGG - tig0021301:58984-59003 Msa1389850:intron 45.0%
ATGATTGACAGGTGCTAGGA+TGG - tig0021301:58988-59007 Msa1389850:intron 45.0%
! CACCATTGTGCAGGCTTTTA+AGG + tig0021301:59258-59277 Msa1389850:intergenic 45.0%
GCAAATCTTCACCATTGTGC+AGG + tig0021301:59267-59286 Msa1389850:intergenic 45.0%
CAGTTGTCAATTAGGTGCCA+AGG + tig0021301:59411-59430 Msa1389850:intergenic 45.0%
TTAACACCTGGATCTGGATC+TGG - tig0021301:59472-59491 Msa1389850:intron 45.0%
TTCCAAAGGAAGGACTAAGG+AGG + tig0021301:60290-60309 Msa1389850:intergenic 45.0%
TGGTTCCAAAGGAAGGACTA+AGG + tig0021301:60293-60312 Msa1389850:intergenic 45.0%
AAACCAAGTCTACTGGTCAC+TGG + tig0021301:60313-60332 Msa1389850:intergenic 45.0%
TGCATGCAAACCAAGTCTAC+TGG + tig0021301:60320-60339 Msa1389850:intergenic 45.0%
!! ACAGGTTGGTACAGAAGAAG+CGG - tig0021301:60689-60708 Msa1389850:intron 45.0%
! TTACATGTTTTCCCCAGGTG+TGG - tig0021301:61440-61459 Msa1389850:five_prime_UTR 45.0%
TCTGTGTGTATTTGCAGCGG+TGG - tig0021301:57354-57373 Msa1389850:three_prime_UTR 50.0%
CAGAAGGGAAGAGTTGGAGA+AGG + tig0021301:57509-57528 Msa1389850:intergenic 50.0%
GGGCATGACTAGAAATCACG+TGG - tig0021301:57905-57924 Msa1389850:intron 50.0%
AGATAAGACACATGCGGCTG+AGG + tig0021301:58038-58057 Msa1389850:intergenic 50.0%
TGACCCGACTTAGTGGGATA+AGG - tig0021301:58435-58454 Msa1389850:intron 50.0%
CGACTTAGTGGGATAAGGCT+TGG - tig0021301:58440-58459 Msa1389850:intron 50.0%
TGAGCTGCCATAAAACGCCA+TGG - tig0021301:58599-58618 Msa1389850:intron 50.0%
! TCATGTCGGTATTGGACACC+CGG + tig0021301:58707-58726 Msa1389850:intergenic 50.0%
TGTGGGGGTCAATGATTGAC+AGG - tig0021301:58977-58996 Msa1389850:intron 50.0%
! ATTCACTTGCTGCTAGACCC+TGG - tig0021301:59016-59035 Msa1389850:intron 50.0%
ATCTGGATCTGGATCTGCAC+AGG - tig0021301:59483-59502 Msa1389850:intron 50.0%
ATCTGGATCTGCACAGGAAG+AGG - tig0021301:59489-59508 Msa1389850:intron 50.0%
TGCACAGGAAGAGGTAGTTG+TGG - tig0021301:59498-59517 Msa1389850:intron 50.0%
AAGGAAGGACTAAGGAGGCA+AGG + tig0021301:60285-60304 Msa1389850:intergenic 50.0%
TGCCTCCTTAGTCCTTCCTT+TGG - tig0021301:60285-60304 Msa1389850:intron 50.0%
!! TGGTCACTGGTTCCAAAGGA+AGG + tig0021301:60300-60319 Msa1389850:intergenic 50.0%
!! CTACTGGTCACTGGTTCCAA+AGG + tig0021301:60304-60323 Msa1389850:intergenic 50.0%
GAACCAGTGACCAGTAGACT+TGG - tig0021301:60307-60326 Msa1389850:intron 50.0%
! TGAGAGGGGTACATGTGTGT+TGG - tig0021301:60545-60564 Msa1389850:intron 50.0%
! GAGAGGGGTACATGTGTGTT+GGG - tig0021301:60546-60565 Msa1389850:intron 50.0%
GGTACATGTGTGTTGGGCTA+GGG - tig0021301:60552-60571 Msa1389850:intron 50.0%
! CTGTGATGGTGATGTTGCAG+AGG - tig0021301:60583-60602 Msa1389850:intron 50.0%
TGGTGTGGGAATCCAAGACT+AGG - tig0021301:61266-61285 Msa1389850:CDS 50.0%
GGTGTGGGAATCCAAGACTA+GGG - tig0021301:61267-61286 Msa1389850:CDS 50.0%
GTGTATTTGCAGCGGTGGTG+TGG - tig0021301:57359-57378 Msa1389850:three_prime_UTR 55.0%
! AGCAGCGCCATGGCGTTTTA+TGG + tig0021301:58609-58628 Msa1389850:intergenic 55.0%
GCAGATCCAGATCCAGATCC+AGG + tig0021301:59481-59500 Msa1389850:intergenic 55.0%
GGGTACATGTGTGTTGGGCT+AGG - tig0021301:60551-60570 Msa1389850:intron 55.0%
ATGCGGCTGACCCGACTTAG+TGG - tig0021301:58428-58447 Msa1389850:intron 60.0%
TGCGGCTGACCCGACTTAGT+GGG - tig0021301:58429-58448 Msa1389850:intron 60.0%
TGTGAAGGACAGCAGCGCCA+TGG + tig0021301:58619-58638 Msa1389850:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0021301 gene 57320 61465 57320 ID=Msa1389850;Name=Msa1389850
tig0021301 mRNA 57320 61465 57320 ID=Msa1389850-mRNA-1;Parent=Msa1389850;Name=Msa1389850-mRNA-1;_AED=0.04;_eAED=0.04;_QI=163|1|1|1|1|1|6|309|119
tig0021301 exon 57320 57682 57320 ID=Msa1389850-mRNA-1:exon:11832;Parent=Msa1389850-mRNA-1
tig0021301 exon 58033 58092 58033 ID=Msa1389850-mRNA-1:exon:11831;Parent=Msa1389850-mRNA-1
tig0021301 exon 58945 58985 58945 ID=Msa1389850-mRNA-1:exon:11830;Parent=Msa1389850-mRNA-1
tig0021301 exon 59128 59197 59128 ID=Msa1389850-mRNA-1:exon:11829;Parent=Msa1389850-mRNA-1
tig0021301 exon 59275 59343 59275 ID=Msa1389850-mRNA-1:exon:11828;Parent=Msa1389850-mRNA-1
tig0021301 exon 61237 61465 61237 ID=Msa1389850-mRNA-1:exon:11827;Parent=Msa1389850-mRNA-1
tig0021301 five_prime_UTR 61303 61465 61303 ID=Msa1389850-mRNA-1:five_prime_utr;Parent=Msa1389850-mRNA-1
tig0021301 CDS 61237 61302 61237 ID=Msa1389850-mRNA-1:cds;Parent=Msa1389850-mRNA-1
tig0021301 CDS 59275 59343 59275 ID=Msa1389850-mRNA-1:cds;Parent=Msa1389850-mRNA-1
tig0021301 CDS 59128 59197 59128 ID=Msa1389850-mRNA-1:cds;Parent=Msa1389850-mRNA-1
tig0021301 CDS 58945 58985 58945 ID=Msa1389850-mRNA-1:cds;Parent=Msa1389850-mRNA-1
tig0021301 CDS 58033 58092 58033 ID=Msa1389850-mRNA-1:cds;Parent=Msa1389850-mRNA-1
tig0021301 CDS 57629 57682 57629 ID=Msa1389850-mRNA-1:cds;Parent=Msa1389850-mRNA-1
tig0021301 three_prime_UTR 57320 57628 57320 ID=Msa1389850-mRNA-1:three_prime_utr;Parent=Msa1389850-mRNA-1
Gene Sequence

>Msa1389850

ATGGATGAAGCTGAATTTCAACGCCTTCTCCAACTCTTCCCTTCTGTTCGTTCTCGCGATTACATCGAAGAATCATCATCATCATCATCCAGACAATTAACACCTGGATCTGGATCTGGATCTGCACAGGAAGAGCTAAATGAATGGCATGATGCATGGAATGAAAAGGATAAGGATTTTGAGAATCAAGGAATCAACAAACATGATTCATTTTGGAACAAGCTAAAGTCAGAGGCTGCTAAAAAGGTTGGTACAGAAGAAGCGGAAAGATTTTGCAAGGCGTTTCAACAAATTCATAAGAGACTAGTCAATGAAGAGTTAAGTTTAGATGTTGCTCGAAAATTGGTAAACTCATCCTAA

Protein sequence

>Msa1389850

MDEAEFQRLLQLFPSVRSRDYIEESSSSSSRQLTPGSGSGSAQEELNEWHDAWNEKDKDFENQGINKHDSFWNKLKSEAAKKVGTEEAERFCKAFQQIHKRLVNEELSLDVARKLVNSS*