AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0048180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0048180 MtrunA17_Chr4g0004631 100.000 95 0 0 1 95 1 95 3.16e-65 191
Msa0048180 MtrunA17_Chr2g0331701 96.809 94 3 0 1 94 1 94 1.10e-62 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0048180 AT1G52300.1 89.362 94 10 0 1 94 1 94 1.72e-57 172
Msa0048180 AT3G16080.1 88.298 94 11 0 1 94 1 94 4.23e-57 171
Msa0048180 AT1G15250.2 87.368 95 12 0 1 95 1 95 7.56e-57 170
Msa0048180 AT1G15250.1 87.368 95 12 0 1 95 1 95 7.56e-57 170
Msa0048180 AT3G16080.2 93.333 45 3 0 1 45 1 45 9.79e-25 89.0

Find 47 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACGCAGTCTCTCTGATT+AGG 0.241536 1_2:-417226 Msa0048180:five_prime_UTR
AGCAGCTGCTCCCTTGTTCC+TGG 0.247813 1_2:+415680 None:intergenic
TTTAATTATGTTACAATGTC+AGG 0.318963 1_2:-415525 Msa0048180:three_prime_UTR
ACTGGAGTGAGAAGGCTATT+AGG 0.322324 1_2:-416743 Msa0048180:CDS
ATTGTGTGATTTCAGATAAC+TGG 0.324608 1_2:-416761 Msa0048180:intron
GCTGCTTCTACCTAAGTCTT+TGG 0.329136 1_2:-415663 Msa0048180:exon
TAACGCAGTCTCTCTGATTA+GGG 0.350042 1_2:-417225 Msa0048180:five_prime_UTR
TTGCTGGGCTAATTAATGAT+AGG 0.376503 1_2:-415629 Msa0048180:three_prime_UTR
ATGCTGAGCAGCGACTCTTC+TGG 0.400063 1_2:+416969 None:intergenic
AATTTATATATGAACTCAAA+TGG 0.404538 1_2:+417259 None:intergenic
ATTAAATTCATATTGAAAGA+AGG 0.420357 1_2:+415542 None:intergenic
CATTTCCTGACACGTGCAGC+TGG 0.423824 1_2:+416938 None:intergenic
GCAGCTGCTCCCTTGTTCCT+GGG 0.437974 1_2:+415681 None:intergenic
TTAAATTCATATTGAAAGAA+GGG 0.463210 1_2:+415543 None:intergenic
AGGAGAAAGACCACTGGAAC+TGG 0.467139 1_2:-416723 Msa0048180:CDS
ATTTATATATGAACTCAAAT+GGG 0.468765 1_2:+417260 None:intergenic
CTTACCCAGCTGCACGTGTC+AGG 0.470321 1_2:-416943 Msa0048180:CDS
AGACCCACACACTCTGCGTC+AGG 0.495241 1_2:-417015 Msa0048180:CDS
TTTACATATGGGCCTTAATG+TGG 0.505509 1_2:+417298 None:intergenic
GGTAAGGGAACAGGTAGTTT+CGG 0.507512 1_2:-417052 Msa0048180:CDS
AAGCAATGTTCCAAAGACTT+AGG 0.510606 1_2:+415653 None:intergenic
CACACCTGACGCAGAGTGTG+TGG 0.511653 1_2:+417011 None:intergenic
GACGAAGCAGAAGCAGAAGC+AGG 0.520099 1_2:+417195 None:intergenic
AGGGAAATGAAAACAACAGA+TGG 0.548538 1_2:+415562 None:intergenic
TGAAGCTGCACCCAGGAACA+AGG 0.550050 1_2:-415691 Msa0048180:CDS
AACACGTGACTTGAGTTGGC+CGG 0.555165 1_2:-415411 Msa0048180:three_prime_UTR
AGCAGCGACTCTTCTGGAGA+TGG 0.555977 1_2:+416975 None:intergenic
TTATAACACGTGACTTGAGT+TGG 0.564455 1_2:-415415 Msa0048180:three_prime_UTR
CACACACTCTGCGTCAGGTG+TGG 0.567226 1_2:-417010 Msa0048180:CDS
TTCAAGAGTGGATTCAGAGA+AGG 0.583941 1_2:-416666 Msa0048180:intron
TGTTAAATGAGAATTTGAGT+TGG 0.601919 1_2:-415484 Msa0048180:three_prime_UTR
ACACCTGACGCAGAGTGTGT+GGG 0.604990 1_2:+417012 None:intergenic
TTCAGATAACTGGAGTGAGA+AGG 0.609846 1_2:-416751 Msa0048180:intron
ATTTCCTGACACGTGCAGCT+GGG 0.610760 1_2:+416939 None:intergenic
GAAGCAGAAGCAGAAGCAGG+TGG 0.613188 1_2:+417198 None:intergenic
CAGGTAGTTTCGGTAAGAGA+AGG 0.616160 1_2:-417042 Msa0048180:CDS
CCACTGGAACTGGTAGGATG+AGG 0.619264 1_2:-416713 Msa0048180:CDS
GCTATTAGGAGAAAGACCAC+TGG 0.627964 1_2:-416729 Msa0048180:CDS
CTGGTAGGATGAGGTACTTG+AGG 0.643276 1_2:-416704 Msa0048180:CDS
GAAAGACCACTGGAACTGGT+AGG 0.652178 1_2:-416719 Msa0048180:CDS
GAAGCTGCACCCAGGAACAA+GGG 0.652652 1_2:-415690 Msa0048180:CDS
TCTGGAGATGGAAACTGCGA+CGG 0.655757 1_2:+416987 None:intergenic
CCTCATCCTACCAGTTCCAG+TGG 0.656605 1_2:+416713 None:intergenic
CAGGTACTGAAGCTGCACCC+AGG 0.673244 1_2:-415698 Msa0048180:CDS
GCTTCGTCTACATACAACAA+TGG 0.682607 1_2:-417180 Msa0048180:intron
GTGCCTCGCAGATTCAAGAG+TGG 0.690811 1_2:-416678 Msa0048180:CDS
AATCCACTCTTGAATCTGCG+AGG 0.695196 1_2:+416675 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATAGAAAAAAAACT+GGG - chr1_2:415419-415438 Msa0048180:three_prime_UTR 10.0%
!!! AAAATTTGAATTTTGAATTT+GGG - chr1_2:415947-415966 Msa0048180:intron 10.0%
!!! TTCTAGAATTATTATTTTTT+TGG - chr1_2:416266-416285 Msa0048180:intron 10.0%
!!! CGTTAAATTATTTTTATATA+TGG - chr1_2:416567-416586 Msa0048180:intron 10.0%
!! AAATTTATAGAAAAAAAACT+GGG - chr1_2:415419-415438 Msa0048180:three_prime_UTR 10.0%
!!! AAAATTTGAATTTTGAATTT+GGG - chr1_2:415947-415966 Msa0048180:intron 10.0%
!!! TTCTAGAATTATTATTTTTT+TGG - chr1_2:416266-416285 Msa0048180:intron 10.0%
!!! CGTTAAATTATTTTTATATA+TGG - chr1_2:416567-416586 Msa0048180:intron 10.0%
!! CAAATTTATAGAAAAAAAAC+TGG - chr1_2:415418-415437 Msa0048180:three_prime_UTR 15.0%
!! ATTTATATATGAACTCAAAT+GGG + chr1_2:415483-415502 None:intergenic 15.0%
!! AATTTATATATGAACTCAAA+TGG + chr1_2:415484-415503 None:intergenic 15.0%
!!! TTCTTTCGATTTTTTTAAAA+TGG - chr1_2:415829-415848 Msa0048180:intron 15.0%
!!! TCTTTCGATTTTTTTAAAAT+GGG - chr1_2:415830-415849 Msa0048180:intron 15.0%
!!! CAAAATTTGAATTTTGAATT+TGG - chr1_2:415946-415965 Msa0048180:intron 15.0%
!! TTGAAAAAACCTAATAAAAA+TGG - chr1_2:416637-416656 Msa0048180:intron 15.0%
!!! ATTTTTACATGTTTTACTAT+AGG - chr1_2:416823-416842 Msa0048180:intron 15.0%
!! TTAAATTCATATTGAAAGAA+GGG + chr1_2:417200-417219 None:intergenic 15.0%
!! ATTAAATTCATATTGAAAGA+AGG + chr1_2:417201-417220 None:intergenic 15.0%
!! ATAATAACAAAAAATACTCA+TGG + chr1_2:417309-417328 None:intergenic 15.0%
!! CAAATTTATAGAAAAAAAAC+TGG - chr1_2:415418-415437 Msa0048180:three_prime_UTR 15.0%
!! ATTTATATATGAACTCAAAT+GGG + chr1_2:415483-415502 None:intergenic 15.0%
!! AATTTATATATGAACTCAAA+TGG + chr1_2:415484-415503 None:intergenic 15.0%
!!! TTCTTTCGATTTTTTTAAAA+TGG - chr1_2:415829-415848 Msa0048180:intron 15.0%
!!! TCTTTCGATTTTTTTAAAAT+GGG - chr1_2:415830-415849 Msa0048180:intron 15.0%
!!! CAAAATTTGAATTTTGAATT+TGG - chr1_2:415946-415965 Msa0048180:intron 15.0%
!! TTGAAAAAACCTAATAAAAA+TGG - chr1_2:416637-416656 Msa0048180:intron 15.0%
!!! ATTTTTACATGTTTTACTAT+AGG - chr1_2:416823-416842 Msa0048180:intron 15.0%
!! TTAAATTCATATTGAAAGAA+GGG + chr1_2:417200-417219 None:intergenic 15.0%
!! ATTAAATTCATATTGAAAGA+AGG + chr1_2:417201-417220 None:intergenic 15.0%
!! ATAATAACAAAAAATACTCA+TGG + chr1_2:417309-417328 None:intergenic 15.0%
!!! GTTTTTTGTGTTTAGATTTA+GGG - chr1_2:415871-415890 Msa0048180:intron 20.0%
!!! TGTTTTTTGATTTTCGAAAA+TGG - chr1_2:415915-415934 Msa0048180:intron 20.0%
!!! GTTTTTTGATTTTCGAAAAT+GGG - chr1_2:415916-415935 Msa0048180:intron 20.0%
!! ATTTAATTGATTGATCAATC+TGG - chr1_2:416236-416255 Msa0048180:intron 20.0%
!! TGATTATTATTGTTTAAACC+AGG - chr1_2:417023-417042 Msa0048180:CDS 20.0%
!! TTTAATTATGTTACAATGTC+AGG - chr1_2:417215-417234 Msa0048180:five_prime_UTR 20.0%
!!! GTTTTTTGTGTTTAGATTTA+GGG - chr1_2:415871-415890 Msa0048180:intron 20.0%
!!! TGTTTTTTGATTTTCGAAAA+TGG - chr1_2:415915-415934 Msa0048180:intron 20.0%
!!! GTTTTTTGATTTTCGAAAAT+GGG - chr1_2:415916-415935 Msa0048180:intron 20.0%
!! ATTTAATTGATTGATCAATC+TGG - chr1_2:416236-416255 Msa0048180:intron 20.0%
!! TGATTATTATTGTTTAAACC+AGG - chr1_2:417023-417042 Msa0048180:CDS 20.0%
!! TTTAATTATGTTACAATGTC+AGG - chr1_2:417215-417234 Msa0048180:five_prime_UTR 20.0%
!!! TCATTGATTCAATTCAAGTA+AGG + chr1_2:415659-415678 None:intergenic 25.0%
!! ATTGAATCAATGATTTTTGC+AGG - chr1_2:415666-415685 Msa0048180:exon 25.0%
!! TTGAATCAATGATTTTTGCA+GGG - chr1_2:415667-415686 Msa0048180:exon 25.0%
!!! CGTTTTTTGTGTTTAGATTT+AGG - chr1_2:415870-415889 Msa0048180:intron 25.0%
!!! GTTACTAAATGAGTTGATTT+AGG - chr1_2:416377-416396 Msa0048180:intron 25.0%
! TACACCTAAATAAAGAGATT+TGG + chr1_2:416407-416426 None:intergenic 25.0%
!!! AGCTTATGACCATTTTTATT+AGG + chr1_2:416649-416668 None:intergenic 25.0%
!!! TTGGTTGATAAGTTCAAATA+AGG - chr1_2:416695-416714 Msa0048180:CDS 25.0%
! ATTCACTTAAAACAGAGATT+TGG + chr1_2:416867-416886 None:intergenic 25.0%
!!! TTCTGAGTTGTTATTTTTTC+TGG - chr1_2:416982-417001 Msa0048180:CDS 25.0%
!!! AGGAGTTAAGATTTTTGTTT+AGG - chr1_2:417131-417150 Msa0048180:intron 25.0%
!!! GGAGTTAAGATTTTTGTTTA+GGG - chr1_2:417132-417151 Msa0048180:intron 25.0%
!!! GAGTTAAGATTTTTGTTTAG+GGG - chr1_2:417133-417152 Msa0048180:intron 25.0%
! TGTTAAATGAGAATTTGAGT+TGG - chr1_2:417256-417275 Msa0048180:five_prime_UTR 25.0%
! AAAAAATACTCATGGAAACA+AGG + chr1_2:417301-417320 None:intergenic 25.0%
!!! TCATTGATTCAATTCAAGTA+AGG + chr1_2:415659-415678 None:intergenic 25.0%
!! ATTGAATCAATGATTTTTGC+AGG - chr1_2:415666-415685 Msa0048180:exon 25.0%
!! TTGAATCAATGATTTTTGCA+GGG - chr1_2:415667-415686 Msa0048180:exon 25.0%
!!! CGTTTTTTGTGTTTAGATTT+AGG - chr1_2:415870-415889 Msa0048180:intron 25.0%
!!! GTTACTAAATGAGTTGATTT+AGG - chr1_2:416377-416396 Msa0048180:intron 25.0%
! TACACCTAAATAAAGAGATT+TGG + chr1_2:416407-416426 None:intergenic 25.0%
!!! AGCTTATGACCATTTTTATT+AGG + chr1_2:416649-416668 None:intergenic 25.0%
!!! TTGGTTGATAAGTTCAAATA+AGG - chr1_2:416695-416714 Msa0048180:CDS 25.0%
! ATTCACTTAAAACAGAGATT+TGG + chr1_2:416867-416886 None:intergenic 25.0%
!!! TTCTGAGTTGTTATTTTTTC+TGG - chr1_2:416982-417001 Msa0048180:CDS 25.0%
!!! AGGAGTTAAGATTTTTGTTT+AGG - chr1_2:417131-417150 Msa0048180:intron 25.0%
!!! GGAGTTAAGATTTTTGTTTA+GGG - chr1_2:417132-417151 Msa0048180:intron 25.0%
!!! GAGTTAAGATTTTTGTTTAG+GGG - chr1_2:417133-417152 Msa0048180:intron 25.0%
! TGTTAAATGAGAATTTGAGT+TGG - chr1_2:417256-417275 Msa0048180:five_prime_UTR 25.0%
! AAAAAATACTCATGGAAACA+AGG + chr1_2:417301-417320 None:intergenic 25.0%
!! TATGAACTCAAATGGGTTTT+CGG + chr1_2:415476-415495 None:intergenic 30.0%
TCAAACATTGGAATGAAACT+GGG + chr1_2:415635-415654 None:intergenic 30.0%
ATCAAACATTGGAATGAAAC+TGG + chr1_2:415636-415655 None:intergenic 30.0%
TTCAAGTAAGGATCAAACAT+TGG + chr1_2:415647-415666 None:intergenic 30.0%
! TAGATTTAGGGTTTAAGTTC+AGG - chr1_2:415883-415902 Msa0048180:intron 30.0%
ATTGTGTGATTTCAGATAAC+TGG - chr1_2:415979-415998 Msa0048180:intron 30.0%
! AGAGCCAAATCTCTTTATTT+AGG - chr1_2:416400-416419 Msa0048180:intron 30.0%
!!! TTTAGGTGTAGCAACTTTTT+TGG - chr1_2:416417-416436 Msa0048180:intron 30.0%
!!! TTAGGTGTAGCAACTTTTTT+GGG - chr1_2:416418-416437 Msa0048180:intron 30.0%
! AGGTTCTAATTTAGATCAGT+TGG - chr1_2:416728-416747 Msa0048180:CDS 30.0%
AATTTAGATCAGTTGGATCT+TGG - chr1_2:416735-416754 Msa0048180:CDS 30.0%
! CTTTTGTTAGCATGATTGTA+TGG - chr1_2:416943-416962 Msa0048180:CDS 30.0%
!! TATGAACTCAAATGGGTTTT+CGG + chr1_2:415476-415495 None:intergenic 30.0%
TCAAACATTGGAATGAAACT+GGG + chr1_2:415635-415654 None:intergenic 30.0%
ATCAAACATTGGAATGAAAC+TGG + chr1_2:415636-415655 None:intergenic 30.0%
TTCAAGTAAGGATCAAACAT+TGG + chr1_2:415647-415666 None:intergenic 30.0%
! TAGATTTAGGGTTTAAGTTC+AGG - chr1_2:415883-415902 Msa0048180:intron 30.0%
ATTGTGTGATTTCAGATAAC+TGG - chr1_2:415979-415998 Msa0048180:intron 30.0%
! AGAGCCAAATCTCTTTATTT+AGG - chr1_2:416400-416419 Msa0048180:intron 30.0%
!!! TTTAGGTGTAGCAACTTTTT+TGG - chr1_2:416417-416436 Msa0048180:intron 30.0%
!!! TTAGGTGTAGCAACTTTTTT+GGG - chr1_2:416418-416437 Msa0048180:intron 30.0%
! AGGTTCTAATTTAGATCAGT+TGG - chr1_2:416728-416747 Msa0048180:CDS 30.0%
AATTTAGATCAGTTGGATCT+TGG - chr1_2:416735-416754 Msa0048180:CDS 30.0%
! CTTTTGTTAGCATGATTGTA+TGG - chr1_2:416943-416962 Msa0048180:CDS 30.0%
AAAAAAACTGGGCCACATTA+AGG - chr1_2:415430-415449 Msa0048180:three_prime_UTR 35.0%
TTTACATATGGGCCTTAATG+TGG + chr1_2:415445-415464 None:intergenic 35.0%
!!! CGGGTCTGTTTTTTACATAT+GGG + chr1_2:415456-415475 None:intergenic 35.0%
!!! TCGGGTCTGTTTTTTACATA+TGG + chr1_2:415457-415476 None:intergenic 35.0%
!! ATGAACTCAAATGGGTTTTC+GGG + chr1_2:415475-415494 None:intergenic 35.0%
CAAACATTGGAATGAAACTG+GGG + chr1_2:415634-415653 None:intergenic 35.0%
! TCAATGATTTTTGCAGGGTA+AGG - chr1_2:415672-415691 Msa0048180:CDS 35.0%
! CAATGATTTTTGCAGGGTAA+GGG - chr1_2:415673-415692 Msa0048180:CDS 35.0%
! TAGGGTTTAAGTTCAGGAAA+TGG - chr1_2:415889-415908 Msa0048180:intron 35.0%
GTGCTAGAAAAACTAAACAC+AGG + chr1_2:416122-416141 None:intergenic 35.0%
TAAGCTGTATATCCAATGCA+GGG + chr1_2:416479-416498 None:intergenic 35.0%
ATAAGCTGTATATCCAATGC+AGG + chr1_2:416480-416499 None:intergenic 35.0%
CAAGTTCTCACAACTTATGT+TGG - chr1_2:416676-416695 Msa0048180:CDS 35.0%
GATCTAAATTAGAACCTGCA+TGG + chr1_2:416725-416744 None:intergenic 35.0%
!! AGTTGGATCTTGGTTCTTTT+AGG - chr1_2:416745-416764 Msa0048180:CDS 35.0%
AAGCAATGTTCCAAAGACTT+AGG + chr1_2:417090-417109 None:intergenic 35.0%
!!! TTTGGAACATTGCTTTTTGC+TGG - chr1_2:417095-417114 Msa0048180:intron 35.0%
!!! TTGGAACATTGCTTTTTGCT+GGG - chr1_2:417096-417115 Msa0048180:intron 35.0%
TTGCTGGGCTAATTAATGAT+AGG - chr1_2:417111-417130 Msa0048180:intron 35.0%
!! AAGATTTTTGTTTAGGGGCA+TGG - chr1_2:417138-417157 Msa0048180:intron 35.0%
AGGGAAATGAAAACAACAGA+TGG + chr1_2:417181-417200 None:intergenic 35.0%
TTATAACACGTGACTTGAGT+TGG - chr1_2:417325-417344 Msa0048180:five_prime_UTR 35.0%
AAAAAAACTGGGCCACATTA+AGG - chr1_2:415430-415449 Msa0048180:three_prime_UTR 35.0%
TTTACATATGGGCCTTAATG+TGG + chr1_2:415445-415464 None:intergenic 35.0%
!!! CGGGTCTGTTTTTTACATAT+GGG + chr1_2:415456-415475 None:intergenic 35.0%
!!! TCGGGTCTGTTTTTTACATA+TGG + chr1_2:415457-415476 None:intergenic 35.0%
!! ATGAACTCAAATGGGTTTTC+GGG + chr1_2:415475-415494 None:intergenic 35.0%
CAAACATTGGAATGAAACTG+GGG + chr1_2:415634-415653 None:intergenic 35.0%
! TCAATGATTTTTGCAGGGTA+AGG - chr1_2:415672-415691 Msa0048180:CDS 35.0%
! CAATGATTTTTGCAGGGTAA+GGG - chr1_2:415673-415692 Msa0048180:CDS 35.0%
! TAGGGTTTAAGTTCAGGAAA+TGG - chr1_2:415889-415908 Msa0048180:intron 35.0%
GTGCTAGAAAAACTAAACAC+AGG + chr1_2:416122-416141 None:intergenic 35.0%
TAAGCTGTATATCCAATGCA+GGG + chr1_2:416479-416498 None:intergenic 35.0%
ATAAGCTGTATATCCAATGC+AGG + chr1_2:416480-416499 None:intergenic 35.0%
CAAGTTCTCACAACTTATGT+TGG - chr1_2:416676-416695 Msa0048180:CDS 35.0%
GATCTAAATTAGAACCTGCA+TGG + chr1_2:416725-416744 None:intergenic 35.0%
!! AGTTGGATCTTGGTTCTTTT+AGG - chr1_2:416745-416764 Msa0048180:CDS 35.0%
AAGCAATGTTCCAAAGACTT+AGG + chr1_2:417090-417109 None:intergenic 35.0%
!!! TTTGGAACATTGCTTTTTGC+TGG - chr1_2:417095-417114 Msa0048180:intron 35.0%
!!! TTGGAACATTGCTTTTTGCT+GGG - chr1_2:417096-417115 Msa0048180:intron 35.0%
TTGCTGGGCTAATTAATGAT+AGG - chr1_2:417111-417130 Msa0048180:intron 35.0%
!! AAGATTTTTGTTTAGGGGCA+TGG - chr1_2:417138-417157 Msa0048180:intron 35.0%
AGGGAAATGAAAACAACAGA+TGG + chr1_2:417181-417200 None:intergenic 35.0%
TTATAACACGTGACTTGAGT+TGG - chr1_2:417325-417344 Msa0048180:five_prime_UTR 35.0%
TTAACGCAGTCTCTCTGATT+AGG - chr1_2:415514-415533 Msa0048180:three_prime_UTR 40.0%
TAACGCAGTCTCTCTGATTA+GGG - chr1_2:415515-415534 Msa0048180:three_prime_UTR 40.0%
GCTTCGTCTACATACAACAA+TGG - chr1_2:415560-415579 Msa0048180:three_prime_UTR 40.0%
! TTGGAATGAAACTGGGGTTT+TGG + chr1_2:415628-415647 None:intergenic 40.0%
TTCAGATAACTGGAGTGAGA+AGG - chr1_2:415989-416008 Msa0048180:intron 40.0%
! TTCAAGAGTGGATTCAGAGA+AGG - chr1_2:416074-416093 Msa0048180:intron 40.0%
TCAAATAAGGCAATCCATGC+AGG - chr1_2:416708-416727 Msa0048180:CDS 40.0%
TTAACGCAGTCTCTCTGATT+AGG - chr1_2:415514-415533 Msa0048180:three_prime_UTR 40.0%
TAACGCAGTCTCTCTGATTA+GGG - chr1_2:415515-415534 Msa0048180:three_prime_UTR 40.0%
GCTTCGTCTACATACAACAA+TGG - chr1_2:415560-415579 Msa0048180:three_prime_UTR 40.0%
! TTGGAATGAAACTGGGGTTT+TGG + chr1_2:415628-415647 None:intergenic 40.0%
TTCAGATAACTGGAGTGAGA+AGG - chr1_2:415989-416008 Msa0048180:intron 40.0%
! TTCAAGAGTGGATTCAGAGA+AGG - chr1_2:416074-416093 Msa0048180:intron 40.0%
TCAAATAAGGCAATCCATGC+AGG - chr1_2:416708-416727 Msa0048180:CDS 40.0%
!!! AAACTGGGGTTTTGGATCGA+AGG + chr1_2:415620-415639 None:intergenic 45.0%
! TTTTTGCAGGGTAAGGGAAC+AGG - chr1_2:415679-415698 Msa0048180:CDS 45.0%
GGTAAGGGAACAGGTAGTTT+CGG - chr1_2:415688-415707 Msa0048180:CDS 45.0%
CAGGTAGTTTCGGTAAGAGA+AGG - chr1_2:415698-415717 Msa0048180:CDS 45.0%
ACTGGAGTGAGAAGGCTATT+AGG - chr1_2:415997-416016 Msa0048180:intron 45.0%
GCTATTAGGAGAAAGACCAC+TGG - chr1_2:416011-416030 Msa0048180:intron 45.0%
AATCCACTCTTGAATCTGCG+AGG + chr1_2:416068-416087 None:intergenic 45.0%
CAATGATCAAGTCCCTGCAT+TGG - chr1_2:416464-416483 Msa0048180:intron 45.0%
GCTGCTTCTACCTAAGTCTT+TGG - chr1_2:417077-417096 Msa0048180:intron 45.0%
!!! AAACTGGGGTTTTGGATCGA+AGG + chr1_2:415620-415639 None:intergenic 45.0%
! TTTTTGCAGGGTAAGGGAAC+AGG - chr1_2:415679-415698 Msa0048180:CDS 45.0%
GGTAAGGGAACAGGTAGTTT+CGG - chr1_2:415688-415707 Msa0048180:CDS 45.0%
CAGGTAGTTTCGGTAAGAGA+AGG - chr1_2:415698-415717 Msa0048180:CDS 45.0%
ACTGGAGTGAGAAGGCTATT+AGG - chr1_2:415997-416016 Msa0048180:intron 45.0%
GCTATTAGGAGAAAGACCAC+TGG - chr1_2:416011-416030 Msa0048180:intron 45.0%
AATCCACTCTTGAATCTGCG+AGG + chr1_2:416068-416087 None:intergenic 45.0%
CAATGATCAAGTCCCTGCAT+TGG - chr1_2:416464-416483 Msa0048180:intron 45.0%
GCTGCTTCTACCTAAGTCTT+TGG - chr1_2:417077-417096 Msa0048180:intron 45.0%
TCTGGAGATGGAAACTGCGA+CGG + chr1_2:415756-415775 None:intergenic 50.0%
ATTTCCTGACACGTGCAGCT+GGG + chr1_2:415804-415823 None:intergenic 50.0%
AGGAGAAAGACCACTGGAAC+TGG - chr1_2:416017-416036 Msa0048180:intron 50.0%
GAAAGACCACTGGAACTGGT+AGG - chr1_2:416021-416040 Msa0048180:intron 50.0%
! CTGGTAGGATGAGGTACTTG+AGG - chr1_2:416036-416055 Msa0048180:intron 50.0%
!! AACACGTGACTTGAGTTGGC+CGG - chr1_2:417329-417348 Msa0048180:five_prime_UTR 50.0%
TCTGGAGATGGAAACTGCGA+CGG + chr1_2:415756-415775 None:intergenic 50.0%
ATTTCCTGACACGTGCAGCT+GGG + chr1_2:415804-415823 None:intergenic 50.0%
AGGAGAAAGACCACTGGAAC+TGG - chr1_2:416017-416036 Msa0048180:intron 50.0%
GAAAGACCACTGGAACTGGT+AGG - chr1_2:416021-416040 Msa0048180:intron 50.0%
! CTGGTAGGATGAGGTACTTG+AGG - chr1_2:416036-416055 Msa0048180:intron 50.0%
GAAGCAGAAGCAGAAGCAGG+TGG + chr1_2:415545-415564 None:intergenic 55.0%
GACGAAGCAGAAGCAGAAGC+AGG + chr1_2:415548-415567 None:intergenic 55.0%
ACACCTGACGCAGAGTGTGT+GGG + chr1_2:415731-415750 None:intergenic 55.0%
! AGCAGCGACTCTTCTGGAGA+TGG + chr1_2:415768-415787 None:intergenic 55.0%
ATGCTGAGCAGCGACTCTTC+TGG + chr1_2:415774-415793 None:intergenic 55.0%
CATTTCCTGACACGTGCAGC+TGG + chr1_2:415805-415824 None:intergenic 55.0%
CCTCATCCTACCAGTTCCAG+TGG + chr1_2:416030-416049 None:intergenic 55.0%
CCACTGGAACTGGTAGGATG+AGG - chr1_2:416027-416046 Msa0048180:intron 55.0%
GTGCCTCGCAGATTCAAGAG+TGG - chr1_2:416062-416081 Msa0048180:intron 55.0%
TGAAGCTGCACCCAGGAACA+AGG - chr1_2:417049-417068 Msa0048180:CDS 55.0%
GAAGCTGCACCCAGGAACAA+GGG - chr1_2:417050-417069 Msa0048180:CDS 55.0%
!! ACACGTGACTTGAGTTGGCC+GGG - chr1_2:417330-417349 Msa0048180:five_prime_UTR 55.0%
GAAGCAGAAGCAGAAGCAGG+TGG + chr1_2:415545-415564 None:intergenic 55.0%
GACGAAGCAGAAGCAGAAGC+AGG + chr1_2:415548-415567 None:intergenic 55.0%
ACACCTGACGCAGAGTGTGT+GGG + chr1_2:415731-415750 None:intergenic 55.0%
! AGCAGCGACTCTTCTGGAGA+TGG + chr1_2:415768-415787 None:intergenic 55.0%
ATGCTGAGCAGCGACTCTTC+TGG + chr1_2:415774-415793 None:intergenic 55.0%
CATTTCCTGACACGTGCAGC+TGG + chr1_2:415805-415824 None:intergenic 55.0%
CCTCATCCTACCAGTTCCAG+TGG + chr1_2:416030-416049 None:intergenic 55.0%
CCACTGGAACTGGTAGGATG+AGG - chr1_2:416027-416046 Msa0048180:intron 55.0%
GTGCCTCGCAGATTCAAGAG+TGG - chr1_2:416062-416081 Msa0048180:intron 55.0%
TGAAGCTGCACCCAGGAACA+AGG - chr1_2:417049-417068 Msa0048180:CDS 55.0%
GAAGCTGCACCCAGGAACAA+GGG - chr1_2:417050-417069 Msa0048180:CDS 55.0%
AGACCCACACACTCTGCGTC+AGG - chr1_2:415725-415744 Msa0048180:intron 60.0%
CACACCTGACGCAGAGTGTG+TGG + chr1_2:415732-415751 None:intergenic 60.0%
CACACACTCTGCGTCAGGTG+TGG - chr1_2:415730-415749 Msa0048180:intron 60.0%
CTTACCCAGCTGCACGTGTC+AGG - chr1_2:415797-415816 Msa0048180:intron 60.0%
CTGGGTGCAGCTTCAGTACC+TGG + chr1_2:417044-417063 None:intergenic 60.0%
!! CAGGTACTGAAGCTGCACCC+AGG - chr1_2:417042-417061 Msa0048180:CDS 60.0%
GCAGCTGCTCCCTTGTTCCT+GGG + chr1_2:417062-417081 None:intergenic 60.0%
AGCAGCTGCTCCCTTGTTCC+TGG + chr1_2:417063-417082 None:intergenic 60.0%
AGACCCACACACTCTGCGTC+AGG - chr1_2:415725-415744 Msa0048180:intron 60.0%
CACACCTGACGCAGAGTGTG+TGG + chr1_2:415732-415751 None:intergenic 60.0%
CACACACTCTGCGTCAGGTG+TGG - chr1_2:415730-415749 Msa0048180:intron 60.0%
CTTACCCAGCTGCACGTGTC+AGG - chr1_2:415797-415816 Msa0048180:intron 60.0%
CTGGGTGCAGCTTCAGTACC+TGG + chr1_2:417044-417063 None:intergenic 60.0%
!! CAGGTACTGAAGCTGCACCC+AGG - chr1_2:417042-417061 Msa0048180:CDS 60.0%
GCAGCTGCTCCCTTGTTCCT+GGG + chr1_2:417062-417081 None:intergenic 60.0%
AGCAGCTGCTCCCTTGTTCC+TGG + chr1_2:417063-417082 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 415411 417351 415411 ID=Msa0048180;Name=Msa0048180
chr1_2 mRNA 415411 417351 415411 ID=Msa0048180-mRNA-1;Parent=Msa0048180;Name=Msa0048180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=168|1|1|1|1|1|4|260|95
chr1_2 exon 415411 415717 415411 ID=Msa0048180-mRNA-1:exon:66;Parent=Msa0048180-mRNA-1
chr1_2 exon 416667 416768 416667 ID=Msa0048180-mRNA-1:exon:65;Parent=Msa0048180-mRNA-1
chr1_2 exon 416939 417074 416939 ID=Msa0048180-mRNA-1:exon:64;Parent=Msa0048180-mRNA-1
chr1_2 exon 417181 417351 417181 ID=Msa0048180-mRNA-1:exon:63;Parent=Msa0048180-mRNA-1
chr1_2 five_prime_UTR 417184 417351 417184 ID=Msa0048180-mRNA-1:five_prime_utr;Parent=Msa0048180-mRNA-1
chr1_2 CDS 417181 417183 417181 ID=Msa0048180-mRNA-1:cds;Parent=Msa0048180-mRNA-1
chr1_2 CDS 416939 417074 416939 ID=Msa0048180-mRNA-1:cds;Parent=Msa0048180-mRNA-1
chr1_2 CDS 416667 416768 416667 ID=Msa0048180-mRNA-1:cds;Parent=Msa0048180-mRNA-1
chr1_2 CDS 415671 415717 415671 ID=Msa0048180-mRNA-1:cds;Parent=Msa0048180-mRNA-1
chr1_2 three_prime_UTR 415411 415670 415411 ID=Msa0048180-mRNA-1:three_prime_utr;Parent=Msa0048180-mRNA-1
Gene Sequence

>Msa0048180

ATGGGTAAGGGAACAGGTAGTTTCGGTAAGAGAAGGAACAAGACCCACACACTCTGCGTCAGGTGTGGCCGTCGCAGTTTCCATCTCCAGAAGAGTCGCTGCTCAGCATGTGCTTACCCAGCTGCACGTGTCAGGAAATATAACTGGAGTGAGAAGGCTATTAGGAGAAAGACCACTGGAACTGGTAGGATGAGGTACTTGAGGAACGTGCCTCGCAGATTCAAGAGTGGATTCAGAGAAGGTACTGAAGCTGCACCCAGGAACAAGGGAGCAGCTGCTTCTACCTAA

Protein sequence

>Msa0048180

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARVRKYNWSEKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRNKGAAAST*