AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0358670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358670 MtrunA17_Chr3g0096101 96.842 95 3 0 3 97 156 250 7.26e-63 191
Msa0358670 MtrunA17_Chr4g0052201 48.148 81 42 0 3 83 152 232 1.01e-23 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358670 AT4G18260.1 53.659 82 36 1 3 82 158 239 1.96e-26 99.0
Msa0358670 AT2G30890.1 47.253 91 48 0 5 95 152 242 3.90e-24 92.4

Find 16 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATATTGCAAGTTAAATT+TGG 0.205495 3_1:+44020865 Msa0358670:three_prime_UTR
CATCAAAAGGCATAAGAATT+TGG 0.238501 3_1:+44020526 Msa0358670:CDS
GAACCATACACTTCTTCTTT+TGG 0.257377 3_1:-44020418 None:intergenic
TTCTTTGCACATTGGATACT+TGG 0.333622 3_1:+44020438 Msa0358670:CDS
GGTGTTCTAAATGTATATAT+TGG 0.364743 3_1:+44020480 Msa0358670:CDS
TGGAACTGCAGTAACATTCT+TGG 0.365502 3_1:+44020458 Msa0358670:CDS
TTGAAGGCTGGCACTTGTTA+AGG 0.371264 3_1:+44020681 Msa0358670:CDS
TCAAACTATGGTAAGGCAAT+TGG 0.421826 3_1:-44020713 None:intergenic
GGAACTGCAGTAACATTCTT+GGG 0.440614 3_1:+44020459 Msa0358670:CDS
TGAAAAGAAGATGGTATTGA+AGG 0.452602 3_1:+44020665 Msa0358670:CDS
GATCCAAAAGAAGAAGTGTA+TGG 0.524463 3_1:+44020415 Msa0358670:CDS
ATTTGGATCAAACTATGGTA+AGG 0.535190 3_1:-44020720 None:intergenic
AAGAAGATGGTATTGAAGGC+TGG 0.539396 3_1:+44020669 Msa0358670:CDS
TCTTCCAAATGAAAAGAAGA+TGG 0.560372 3_1:+44020656 Msa0358670:CDS
GTGTATGGTTCTTTGCACAT+TGG 0.569730 3_1:+44020430 Msa0358670:CDS
TAACACATATAGAGTACTAG+TGG 0.591416 3_1:+44020770 Msa0358670:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACATAATTTTTGTTGTT+AGG + chr3_1:44020281-44020300 Msa0358670:intron 15.0%
!!! AAAACATAATTTTTGTTGTT+AGG + chr3_1:44020281-44020300 Msa0358670:intron 15.0%
!! ATAGCTCACTATATTTATTT+AGG + chr3_1:44019914-44019933 Msa0358670:intron 20.0%
!! TAAAAATTTGGATCAAACTA+TGG - chr3_1:44020728-44020747 None:intergenic 20.0%
!! GTATATACCATGTAAAAATT+TGG - chr3_1:44020740-44020759 None:intergenic 20.0%
!!! TTCCTTTTGTTTTTTTTATC+AGG + chr3_1:44020828-44020847 Msa0358670:three_prime_UTR 20.0%
!! TTCCTGATAAAAAAAACAAA+AGG - chr3_1:44020833-44020852 None:intergenic 20.0%
!!! TTTGTTTTTTTTATCAGGAA+AGG + chr3_1:44020833-44020852 Msa0358670:three_prime_UTR 20.0%
!! AGAATATTGCAAGTTAAATT+TGG + chr3_1:44020865-44020884 Msa0358670:three_prime_UTR 20.0%
!! ATAGCTCACTATATTTATTT+AGG + chr3_1:44019914-44019933 Msa0358670:intron 20.0%
!! TAAAAATTTGGATCAAACTA+TGG - chr3_1:44020728-44020747 None:intergenic 20.0%
!! GTATATACCATGTAAAAATT+TGG - chr3_1:44020740-44020759 None:intergenic 20.0%
!!! TTCCTTTTGTTTTTTTTATC+AGG + chr3_1:44020828-44020847 Msa0358670:three_prime_UTR 20.0%
!! TTCCTGATAAAAAAAACAAA+AGG - chr3_1:44020833-44020852 None:intergenic 20.0%
!!! TTTGTTTTTTTTATCAGGAA+AGG + chr3_1:44020833-44020852 Msa0358670:three_prime_UTR 20.0%
!! AGAATATTGCAAGTTAAATT+TGG + chr3_1:44020865-44020884 Msa0358670:three_prime_UTR 20.0%
!! ATTTAAATGTTTTACCTTCG+TGG - chr3_1:44019479-44019498 None:intergenic 25.0%
! TCACATAATTCTTGTAATCA+AGG + chr3_1:44019648-44019667 Msa0358670:intron 25.0%
! CACATAATTCTTGTAATCAA+GGG + chr3_1:44019649-44019668 Msa0358670:intron 25.0%
!!! TTTTTGTTGTCTTAAACCTT+CGG - chr3_1:44020263-44020282 None:intergenic 25.0%
! GATTTCAATGGTATAAGATT+GGG - chr3_1:44020327-44020346 None:intergenic 25.0%
! TGATTTCAATGGTATAAGAT+TGG - chr3_1:44020328-44020347 None:intergenic 25.0%
!! AGTTTCGAATATCTTTTCAA+TGG - chr3_1:44020370-44020389 None:intergenic 25.0%
!! ATCTTTATTTACTTGTTCAC+AGG + chr3_1:44020391-44020410 Msa0358670:intron 25.0%
!! TCTTTATTTACTTGTTCACA+GGG + chr3_1:44020392-44020411 Msa0358670:intron 25.0%
!! GGTGTTCTAAATGTATATAT+TGG + chr3_1:44020480-44020499 Msa0358670:CDS 25.0%
!!! TCTACCTTTTTCAAGAAAAA+TGG + chr3_1:44020589-44020608 Msa0358670:CDS 25.0%
!!! CTACCTTTTTCAAGAAAAAT+GGG + chr3_1:44020590-44020609 Msa0358670:CDS 25.0%
!! AATACCATCTTCTTTTCATT+TGG - chr3_1:44020663-44020682 None:intergenic 25.0%
!! GTTTGATCCAAATTTTTACA+TGG + chr3_1:44020730-44020749 Msa0358670:three_prime_UTR 25.0%
!! ATTTAAATGTTTTACCTTCG+TGG - chr3_1:44019479-44019498 None:intergenic 25.0%
! TCACATAATTCTTGTAATCA+AGG + chr3_1:44019648-44019667 Msa0358670:intron 25.0%
! CACATAATTCTTGTAATCAA+GGG + chr3_1:44019649-44019668 Msa0358670:intron 25.0%
!!! TTTTTGTTGTCTTAAACCTT+CGG - chr3_1:44020263-44020282 None:intergenic 25.0%
! GATTTCAATGGTATAAGATT+GGG - chr3_1:44020327-44020346 None:intergenic 25.0%
! TGATTTCAATGGTATAAGAT+TGG - chr3_1:44020328-44020347 None:intergenic 25.0%
!! AGTTTCGAATATCTTTTCAA+TGG - chr3_1:44020370-44020389 None:intergenic 25.0%
!! ATCTTTATTTACTTGTTCAC+AGG + chr3_1:44020391-44020410 Msa0358670:intron 25.0%
!! TCTTTATTTACTTGTTCACA+GGG + chr3_1:44020392-44020411 Msa0358670:intron 25.0%
!! GGTGTTCTAAATGTATATAT+TGG + chr3_1:44020480-44020499 Msa0358670:CDS 25.0%
!!! TCTACCTTTTTCAAGAAAAA+TGG + chr3_1:44020589-44020608 Msa0358670:CDS 25.0%
!!! CTACCTTTTTCAAGAAAAAT+GGG + chr3_1:44020590-44020609 Msa0358670:CDS 25.0%
!! AATACCATCTTCTTTTCATT+TGG - chr3_1:44020663-44020682 None:intergenic 25.0%
!! GTTTGATCCAAATTTTTACA+TGG + chr3_1:44020730-44020749 Msa0358670:three_prime_UTR 25.0%
GTTTCATAGACATAAATGGT+GGG - chr3_1:44019589-44019608 None:intergenic 30.0%
CTTGGTTTCATAGACATAAA+TGG - chr3_1:44019593-44019612 None:intergenic 30.0%
GAAACTTGGTAGAAGAAATT+AGG + chr3_1:44019871-44019890 Msa0358670:intron 30.0%
GTATTATTACTACTACGAAC+CGG + chr3_1:44019936-44019955 Msa0358670:intron 30.0%
!! TTTCTAAGACTAACCTACAT+AGG + chr3_1:44020152-44020171 Msa0358670:intron 30.0%
! TTATGATATAGTCTGGAGTT+CGG - chr3_1:44020224-44020243 None:intergenic 30.0%
! TATCTTTTCAATGGTCTACA+TGG - chr3_1:44020361-44020380 None:intergenic 30.0%
! CTTTATTTACTTGTTCACAG+GGG + chr3_1:44020393-44020412 Msa0358670:intron 30.0%
TACCACGAAAAAACATCAAA+AGG + chr3_1:44020513-44020532 Msa0358670:CDS 30.0%
! CATCAAAAGGCATAAGAATT+TGG + chr3_1:44020526-44020545 Msa0358670:CDS 30.0%
!! AGACCCATTTTTCTTGAAAA+AGG - chr3_1:44020596-44020615 None:intergenic 30.0%
CTACATACAAAAACAAAGAG+TGG + chr3_1:44020614-44020633 Msa0358670:CDS 30.0%
TCTTCCAAATGAAAAGAAGA+TGG + chr3_1:44020656-44020675 Msa0358670:CDS 30.0%
! TGAAAAGAAGATGGTATTGA+AGG + chr3_1:44020665-44020684 Msa0358670:CDS 30.0%
ATTTGGATCAAACTATGGTA+AGG - chr3_1:44020723-44020742 None:intergenic 30.0%
! TAACACATATAGAGTACTAG+TGG + chr3_1:44020770-44020789 Msa0358670:three_prime_UTR 30.0%
GTTTCATAGACATAAATGGT+GGG - chr3_1:44019589-44019608 None:intergenic 30.0%
CTTGGTTTCATAGACATAAA+TGG - chr3_1:44019593-44019612 None:intergenic 30.0%
GAAACTTGGTAGAAGAAATT+AGG + chr3_1:44019871-44019890 Msa0358670:intron 30.0%
GTATTATTACTACTACGAAC+CGG + chr3_1:44019936-44019955 Msa0358670:intron 30.0%
!! TTTCTAAGACTAACCTACAT+AGG + chr3_1:44020152-44020171 Msa0358670:intron 30.0%
! TTATGATATAGTCTGGAGTT+CGG - chr3_1:44020224-44020243 None:intergenic 30.0%
! TATCTTTTCAATGGTCTACA+TGG - chr3_1:44020361-44020380 None:intergenic 30.0%
! CTTTATTTACTTGTTCACAG+GGG + chr3_1:44020393-44020412 Msa0358670:intron 30.0%
TACCACGAAAAAACATCAAA+AGG + chr3_1:44020513-44020532 Msa0358670:CDS 30.0%
! CATCAAAAGGCATAAGAATT+TGG + chr3_1:44020526-44020545 Msa0358670:CDS 30.0%
!! AGACCCATTTTTCTTGAAAA+AGG - chr3_1:44020596-44020615 None:intergenic 30.0%
CTACATACAAAAACAAAGAG+TGG + chr3_1:44020614-44020633 Msa0358670:CDS 30.0%
TCTTCCAAATGAAAAGAAGA+TGG + chr3_1:44020656-44020675 Msa0358670:CDS 30.0%
! TGAAAAGAAGATGGTATTGA+AGG + chr3_1:44020665-44020684 Msa0358670:CDS 30.0%
ATTTGGATCAAACTATGGTA+AGG - chr3_1:44020723-44020742 None:intergenic 30.0%
! TAACACATATAGAGTACTAG+TGG + chr3_1:44020770-44020789 Msa0358670:three_prime_UTR 30.0%
GTGAGCATTTCTCAACAAAA+GGG - chr3_1:44019503-44019522 None:intergenic 35.0%
AGTGAGCATTTCTCAACAAA+AGG - chr3_1:44019504-44019523 None:intergenic 35.0%
! TGCTATCAGGTTTTCGTTAT+CGG + chr3_1:44019559-44019578 Msa0358670:intron 35.0%
GGTTTCATAGACATAAATGG+TGG - chr3_1:44019590-44019609 None:intergenic 35.0%
!!! CCTTTTTTCAACCAAATCAG+CGG - chr3_1:44019768-44019787 None:intergenic 35.0%
AAATGAATCACCATGAGTTG+AGG + chr3_1:44019810-44019829 Msa0358670:intron 35.0%
AGAAGAACATGAACAAAGAG+TGG + chr3_1:44019841-44019860 Msa0358670:intron 35.0%
AGAAGAATTCGGTACGTATA+GGG - chr3_1:44019982-44020001 None:intergenic 35.0%
AACCGCGAATTATGTGATTA+TGG + chr3_1:44020047-44020066 Msa0358670:intron 35.0%
GACCATAATCACATAATTCG+CGG - chr3_1:44020052-44020071 None:intergenic 35.0%
!! ACCTTACAAGCCGATTTTAT+GGG + chr3_1:44020107-44020126 Msa0358670:intron 35.0%
CTAACACAACCCCATAAAAT+CGG - chr3_1:44020120-44020139 None:intergenic 35.0%
!! TAGGTTAGTCTTAGAAATCG+TGG - chr3_1:44020149-44020168 None:intergenic 35.0%
ACTAACCTACATAGGTTTGT+CGG + chr3_1:44020160-44020179 Msa0358670:intron 35.0%
GAAGGGATTATGATATAGTC+TGG - chr3_1:44020231-44020250 None:intergenic 35.0%
TGGTATAAGATTGGGATTTC+AGG - chr3_1:44020319-44020338 None:intergenic 35.0%
! GATCCAAAAGAAGAAGTGTA+TGG + chr3_1:44020415-44020434 Msa0358670:CDS 35.0%
! GAACCATACACTTCTTCTTT+TGG - chr3_1:44020421-44020440 None:intergenic 35.0%
TTCTTTGCACATTGGATACT+TGG + chr3_1:44020438-44020457 Msa0358670:CDS 35.0%
!!! TGCCTTTTGATGTTTTTTCG+TGG - chr3_1:44020518-44020537 None:intergenic 35.0%
TCAAACTATGGTAAGGCAAT+TGG - chr3_1:44020716-44020735 None:intergenic 35.0%
GTGAGCATTTCTCAACAAAA+GGG - chr3_1:44019503-44019522 None:intergenic 35.0%
AGTGAGCATTTCTCAACAAA+AGG - chr3_1:44019504-44019523 None:intergenic 35.0%
! TGCTATCAGGTTTTCGTTAT+CGG + chr3_1:44019559-44019578 Msa0358670:intron 35.0%
GGTTTCATAGACATAAATGG+TGG - chr3_1:44019590-44019609 None:intergenic 35.0%
!!! CCTTTTTTCAACCAAATCAG+CGG - chr3_1:44019768-44019787 None:intergenic 35.0%
AAATGAATCACCATGAGTTG+AGG + chr3_1:44019810-44019829 Msa0358670:intron 35.0%
AGAAGAACATGAACAAAGAG+TGG + chr3_1:44019841-44019860 Msa0358670:intron 35.0%
AGAAGAATTCGGTACGTATA+GGG - chr3_1:44019982-44020001 None:intergenic 35.0%
AACCGCGAATTATGTGATTA+TGG + chr3_1:44020047-44020066 Msa0358670:intron 35.0%
GACCATAATCACATAATTCG+CGG - chr3_1:44020052-44020071 None:intergenic 35.0%
!! ACCTTACAAGCCGATTTTAT+GGG + chr3_1:44020107-44020126 Msa0358670:intron 35.0%
CTAACACAACCCCATAAAAT+CGG - chr3_1:44020120-44020139 None:intergenic 35.0%
!! TAGGTTAGTCTTAGAAATCG+TGG - chr3_1:44020149-44020168 None:intergenic 35.0%
ACTAACCTACATAGGTTTGT+CGG + chr3_1:44020160-44020179 Msa0358670:intron 35.0%
GAAGGGATTATGATATAGTC+TGG - chr3_1:44020231-44020250 None:intergenic 35.0%
TGGTATAAGATTGGGATTTC+AGG - chr3_1:44020319-44020338 None:intergenic 35.0%
! GATCCAAAAGAAGAAGTGTA+TGG + chr3_1:44020415-44020434 Msa0358670:CDS 35.0%
! GAACCATACACTTCTTCTTT+TGG - chr3_1:44020421-44020440 None:intergenic 35.0%
TTCTTTGCACATTGGATACT+TGG + chr3_1:44020438-44020457 Msa0358670:CDS 35.0%
!!! TGCCTTTTGATGTTTTTTCG+TGG - chr3_1:44020518-44020537 None:intergenic 35.0%
TCAAACTATGGTAAGGCAAT+TGG - chr3_1:44020716-44020735 None:intergenic 35.0%
GATAACGAAAACCTGATAGC+AGG - chr3_1:44019560-44019579 None:intergenic 40.0%
! TCATAGACATAAATGGTGGG+TGG - chr3_1:44019586-44019605 None:intergenic 40.0%
ACGACTAGCACTATTGAACT+TGG - chr3_1:44019611-44019630 None:intergenic 40.0%
ATCAAGGGAGAATTGCGAAT+TGG + chr3_1:44019664-44019683 Msa0358670:intron 40.0%
!! CCGCTGATTTGGTTGAAAAA+AGG + chr3_1:44019765-44019784 Msa0358670:intron 40.0%
GAAGAATTCGGTACGTATAG+GGG - chr3_1:44019981-44020000 None:intergenic 40.0%
GAGAAGAATTCGGTACGTAT+AGG - chr3_1:44019983-44020002 None:intergenic 40.0%
!! TAAAATCGGCTTGTAAGGTG+AGG - chr3_1:44020106-44020125 None:intergenic 40.0%
!! CACCTTACAAGCCGATTTTA+TGG + chr3_1:44020106-44020125 Msa0358670:intron 40.0%
!! CCTTACAAGCCGATTTTATG+GGG + chr3_1:44020108-44020127 Msa0358670:intron 40.0%
TTCAACCGACAAACCTATGT+AGG - chr3_1:44020168-44020187 None:intergenic 40.0%
TCGGACGATAGGTAAGTAAA+GGG - chr3_1:44020205-44020224 None:intergenic 40.0%
TTCGGACGATAGGTAAGTAA+AGG - chr3_1:44020206-44020225 None:intergenic 40.0%
GCAAGAAAGGGTGATTTCAA+TGG - chr3_1:44020339-44020358 None:intergenic 40.0%
ATGGTCTACATGGCAAGAAA+GGG - chr3_1:44020351-44020370 None:intergenic 40.0%
AATGGTCTACATGGCAAGAA+AGG - chr3_1:44020352-44020371 None:intergenic 40.0%
GTGTATGGTTCTTTGCACAT+TGG + chr3_1:44020430-44020449 Msa0358670:CDS 40.0%
TGGAACTGCAGTAACATTCT+TGG + chr3_1:44020458-44020477 Msa0358670:CDS 40.0%
GGAACTGCAGTAACATTCTT+GGG + chr3_1:44020459-44020478 Msa0358670:CDS 40.0%
! AAGAAGATGGTATTGAAGGC+TGG + chr3_1:44020669-44020688 Msa0358670:CDS 40.0%
GATAACGAAAACCTGATAGC+AGG - chr3_1:44019560-44019579 None:intergenic 40.0%
! TCATAGACATAAATGGTGGG+TGG - chr3_1:44019586-44019605 None:intergenic 40.0%
ACGACTAGCACTATTGAACT+TGG - chr3_1:44019611-44019630 None:intergenic 40.0%
ATCAAGGGAGAATTGCGAAT+TGG + chr3_1:44019664-44019683 Msa0358670:intron 40.0%
!! CCGCTGATTTGGTTGAAAAA+AGG + chr3_1:44019765-44019784 Msa0358670:intron 40.0%
GAAGAATTCGGTACGTATAG+GGG - chr3_1:44019981-44020000 None:intergenic 40.0%
GAGAAGAATTCGGTACGTAT+AGG - chr3_1:44019983-44020002 None:intergenic 40.0%
!! TAAAATCGGCTTGTAAGGTG+AGG - chr3_1:44020106-44020125 None:intergenic 40.0%
!! CACCTTACAAGCCGATTTTA+TGG + chr3_1:44020106-44020125 Msa0358670:intron 40.0%
!! CCTTACAAGCCGATTTTATG+GGG + chr3_1:44020108-44020127 Msa0358670:intron 40.0%
TTCAACCGACAAACCTATGT+AGG - chr3_1:44020168-44020187 None:intergenic 40.0%
TCGGACGATAGGTAAGTAAA+GGG - chr3_1:44020205-44020224 None:intergenic 40.0%
TTCGGACGATAGGTAAGTAA+AGG - chr3_1:44020206-44020225 None:intergenic 40.0%
GCAAGAAAGGGTGATTTCAA+TGG - chr3_1:44020339-44020358 None:intergenic 40.0%
ATGGTCTACATGGCAAGAAA+GGG - chr3_1:44020351-44020370 None:intergenic 40.0%
AATGGTCTACATGGCAAGAA+AGG - chr3_1:44020352-44020371 None:intergenic 40.0%
GTGTATGGTTCTTTGCACAT+TGG + chr3_1:44020430-44020449 Msa0358670:CDS 40.0%
TGGAACTGCAGTAACATTCT+TGG + chr3_1:44020458-44020477 Msa0358670:CDS 40.0%
GGAACTGCAGTAACATTCTT+GGG + chr3_1:44020459-44020478 Msa0358670:CDS 40.0%
! AAGAAGATGGTATTGAAGGC+TGG + chr3_1:44020669-44020688 Msa0358670:CDS 40.0%
GTGGTCGAATGATACCAACT+AGG - chr3_1:44019460-44019479 None:intergenic 45.0%
TTGGTATCATTCGACCACGA+AGG + chr3_1:44019462-44019481 Msa0358670:intron 45.0%
TCATTCGATCACCTGCTATC+AGG + chr3_1:44019546-44019565 Msa0358670:intron 45.0%
!! TGGTACGTGAGTACCGAATT+CGG + chr3_1:44019684-44019703 Msa0358670:intron 45.0%
! AGTACCGAATTCGGGTACTT+CGG + chr3_1:44019693-44019712 Msa0358670:intron 45.0%
TAACCATGCTTTGGTACGCT+TGG - chr3_1:44019745-44019764 None:intergenic 45.0%
AATCAGCGGTAACCATGCTT+TGG - chr3_1:44019754-44019773 None:intergenic 45.0%
! AAGCATGGTTACCGCTGATT+TGG + chr3_1:44019754-44019773 Msa0358670:intron 45.0%
AGAGTGGAGAGTGAGAAACT+TGG + chr3_1:44019857-44019876 Msa0358670:intron 45.0%
! CGTATAGGGGTATACAGCTT+CGG - chr3_1:44019968-44019987 None:intergenic 45.0%
TACGCGACAGGAGAAGAATT+CGG - chr3_1:44019993-44020012 None:intergenic 45.0%
ACATAATTCGCGGTTCGTTC+CGG - chr3_1:44020042-44020061 None:intergenic 45.0%
GTGTTAAACAGTCCCACAAG+TGG + chr3_1:44020073-44020092 Msa0358670:intron 45.0%
TGAGGATTGTCTCCACTTGT+GGG - chr3_1:44020088-44020107 None:intergenic 45.0%
!! CCCCATAAAATCGGCTTGTA+AGG - chr3_1:44020111-44020130 None:intergenic 45.0%
CTTAAACCTTCGGTTCTCAG+AGG - chr3_1:44020253-44020272 None:intergenic 45.0%
! TTGAAGGCTGGCACTTGTTA+AGG + chr3_1:44020681-44020700 Msa0358670:CDS 45.0%
GTGGTCGAATGATACCAACT+AGG - chr3_1:44019460-44019479 None:intergenic 45.0%
TTGGTATCATTCGACCACGA+AGG + chr3_1:44019462-44019481 Msa0358670:intron 45.0%
TCATTCGATCACCTGCTATC+AGG + chr3_1:44019546-44019565 Msa0358670:intron 45.0%
!! TGGTACGTGAGTACCGAATT+CGG + chr3_1:44019684-44019703 Msa0358670:intron 45.0%
! AGTACCGAATTCGGGTACTT+CGG + chr3_1:44019693-44019712 Msa0358670:intron 45.0%
TAACCATGCTTTGGTACGCT+TGG - chr3_1:44019745-44019764 None:intergenic 45.0%
AATCAGCGGTAACCATGCTT+TGG - chr3_1:44019754-44019773 None:intergenic 45.0%
! AAGCATGGTTACCGCTGATT+TGG + chr3_1:44019754-44019773 Msa0358670:intron 45.0%
AGAGTGGAGAGTGAGAAACT+TGG + chr3_1:44019857-44019876 Msa0358670:intron 45.0%
! CGTATAGGGGTATACAGCTT+CGG - chr3_1:44019968-44019987 None:intergenic 45.0%
TACGCGACAGGAGAAGAATT+CGG - chr3_1:44019993-44020012 None:intergenic 45.0%
ACATAATTCGCGGTTCGTTC+CGG - chr3_1:44020042-44020061 None:intergenic 45.0%
GTGTTAAACAGTCCCACAAG+TGG + chr3_1:44020073-44020092 Msa0358670:intron 45.0%
TGAGGATTGTCTCCACTTGT+GGG - chr3_1:44020088-44020107 None:intergenic 45.0%
!! CCCCATAAAATCGGCTTGTA+AGG - chr3_1:44020111-44020130 None:intergenic 45.0%
CTTAAACCTTCGGTTCTCAG+AGG - chr3_1:44020253-44020272 None:intergenic 45.0%
! TTGAAGGCTGGCACTTGTTA+AGG + chr3_1:44020681-44020700 Msa0358670:CDS 45.0%
ATCTGGCTGCAAGTCCTAGT+TGG + chr3_1:44019443-44019462 Msa0358670:intron 50.0%
!! GGTACGTGAGTACCGAATTC+GGG + chr3_1:44019685-44019704 Msa0358670:intron 50.0%
! TACGCCGAAGTACCCGAATT+CGG - chr3_1:44019700-44019719 None:intergenic 50.0%
ATTCGGGTACTTCGGCGTAT+TGG + chr3_1:44019701-44019720 Msa0358670:intron 50.0%
GAACCAAGCGTACCAAAGCA+TGG + chr3_1:44019739-44019758 Msa0358670:intron 50.0%
CTCACTCAGTCCTCAACTCA+TGG - chr3_1:44019823-44019842 None:intergenic 50.0%
TATACAGCTTCGGTACGCTC+CGG - chr3_1:44019958-44019977 None:intergenic 50.0%
GTGAGGATTGTCTCCACTTG+TGG - chr3_1:44020089-44020108 None:intergenic 50.0%
! TAGTCTGGAGTTCGGACGAT+AGG - chr3_1:44020216-44020235 None:intergenic 50.0%
ACCTTCGGTTCTCAGAGGAA+GGG - chr3_1:44020248-44020267 None:intergenic 50.0%
AACCTTCGGTTCTCAGAGGA+AGG - chr3_1:44020249-44020268 None:intergenic 50.0%
ATCTGGCTGCAAGTCCTAGT+TGG + chr3_1:44019443-44019462 Msa0358670:intron 50.0%
!! GGTACGTGAGTACCGAATTC+GGG + chr3_1:44019685-44019704 Msa0358670:intron 50.0%
! TACGCCGAAGTACCCGAATT+CGG - chr3_1:44019700-44019719 None:intergenic 50.0%
ATTCGGGTACTTCGGCGTAT+TGG + chr3_1:44019701-44019720 Msa0358670:intron 50.0%
GAACCAAGCGTACCAAAGCA+TGG + chr3_1:44019739-44019758 Msa0358670:intron 50.0%
CTCACTCAGTCCTCAACTCA+TGG - chr3_1:44019823-44019842 None:intergenic 50.0%
TATACAGCTTCGGTACGCTC+CGG - chr3_1:44019958-44019977 None:intergenic 50.0%
GTGAGGATTGTCTCCACTTG+TGG - chr3_1:44020089-44020108 None:intergenic 50.0%
! TAGTCTGGAGTTCGGACGAT+AGG - chr3_1:44020216-44020235 None:intergenic 50.0%
ACCTTCGGTTCTCAGAGGAA+GGG - chr3_1:44020248-44020267 None:intergenic 50.0%
AACCTTCGGTTCTCAGAGGA+AGG - chr3_1:44020249-44020268 None:intergenic 50.0%
! CTTTGGTACGCTTGGTTCGC+TGG - chr3_1:44019737-44019756 None:intergenic 55.0%
! TCCCTTCCTCTGAGAACCGA+AGG + chr3_1:44020244-44020263 Msa0358670:intron 55.0%
! CTTTGGTACGCTTGGTTCGC+TGG - chr3_1:44019737-44019756 None:intergenic 55.0%
! TCCCTTCCTCTGAGAACCGA+AGG + chr3_1:44020244-44020263 Msa0358670:intron 55.0%
TTCGTTCCGGTACGCGGTAC+GGG - chr3_1:44020029-44020048 None:intergenic 60.0%
GTTCGTTCCGGTACGCGGTA+CGG - chr3_1:44020030-44020049 None:intergenic 60.0%
TTCGTTCCGGTACGCGGTAC+GGG - chr3_1:44020029-44020048 None:intergenic 60.0%
GTTCGTTCCGGTACGCGGTA+CGG - chr3_1:44020030-44020049 None:intergenic 60.0%
TCCGGTACGCGGTACGGGTA+CGG - chr3_1:44020024-44020043 None:intergenic 65.0%
TCGCGGTTCGTTCCGGTACG+CGG - chr3_1:44020035-44020054 None:intergenic 65.0%
TCCGGTACGCGGTACGGGTA+CGG - chr3_1:44020024-44020043 None:intergenic 65.0%
TCGCGGTTCGTTCCGGTACG+CGG - chr3_1:44020035-44020054 None:intergenic 65.0%
ACGGGTTCGCGGTACGCGAC+AGG - chr3_1:44020005-44020024 None:intergenic 70.0%
GCGGTACGGGTACGGGTTCG+CGG - chr3_1:44020016-44020035 None:intergenic 70.0%
CCGGTACGCGGTACGGGTAC+GGG - chr3_1:44020023-44020042 None:intergenic 70.0%
CCCGTACCCGTACCGCGTAC+CGG + chr3_1:44020020-44020039 Msa0358670:intron 70.0%
ACGGGTTCGCGGTACGCGAC+AGG - chr3_1:44020005-44020024 None:intergenic 70.0%
GCGGTACGGGTACGGGTTCG+CGG - chr3_1:44020016-44020035 None:intergenic 70.0%
CCGGTACGCGGTACGGGTAC+GGG - chr3_1:44020023-44020042 None:intergenic 70.0%
CCCGTACCCGTACCGCGTAC+CGG + chr3_1:44020020-44020039 Msa0358670:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 44019435 44020894 44019435 ID=Msa0358670;Name=Msa0358670
chr3_1 mRNA 44019435 44020894 44019435 ID=Msa0358670-mRNA-1;Parent=Msa0358670;Name=Msa0358670-mRNA-1;_AED=0.39;_eAED=0.40;_QI=0|0|0.5|1|1|1|2|193|97
chr3_1 exon 44019435 44019439 44019435 ID=Msa0358670-mRNA-1:exon:7813;Parent=Msa0358670-mRNA-1
chr3_1 exon 44020413 44020894 44020413 ID=Msa0358670-mRNA-1:exon:7814;Parent=Msa0358670-mRNA-1
chr3_1 CDS 44019435 44019439 44019435 ID=Msa0358670-mRNA-1:cds;Parent=Msa0358670-mRNA-1
chr3_1 CDS 44020413 44020701 44020413 ID=Msa0358670-mRNA-1:cds;Parent=Msa0358670-mRNA-1
chr3_1 three_prime_UTR 44020702 44020894 44020702 ID=Msa0358670-mRNA-1:three_prime_utr;Parent=Msa0358670-mRNA-1
Gene Sequence

>Msa0358670

ATGGTGGGATCCAAAAGAAGAAGTGTATGGTTCTTTGCACATTGGATACTTGGAACTGCAGTAACATTCTTGGGTGTTCTAAATGTATATATTGGTTTAGCAGCTTACCACGAAAAAACATCAAAAGGCATAAGAATTTGGAATATACTTTTCACTATTCAGATATCATTGATTGTATTTTTCTACCTTTTTCAAGAAAAATGGGTCTACATACAAAAACAAAGAGTGGTTTTGAGCAATGAAGAAAGTCTTCCAAATGAAAAGAAGATGGTATTGAAGGCTGGCACTTGTTAA

Protein sequence

>Msa0358670

MVGSKRRSVWFFAHWILGTAVTFLGVLNVYIGLAAYHEKTSKGIRIWNILFTIQISLIVFFYLFQEKWVYIQKQRVVLSNEESLPNEKKMVLKAGTC*