AlfalfaGEDB | Msa0992550

M. sativa cultivar zhongmu-4 / Msa0992550

KEGG: K16911
GO: GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360
PFAM: PF00270.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0992550	XP_013452399.1	97.361	682	14	2	1	679	1	681	0.0	1333

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0992550	sp\|Q39189\|RH7_ARATH	73.889	540	140	1	97	635	90	629	0.0	825

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0992550	A0A072U9X5	97.361	682	14	2	1	679	1	681	0.0	1333

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032810	Msa0992550	0.805671	1.192877e-49	-8.615850e-47
Msa0080730	Msa0992550	0.818225	2.190280e-52	-8.615850e-47
Msa0119900	Msa0992550	0.800457	1.428634e-48	-8.615850e-47
Msa0142410	Msa0992550	0.807710	4.425572e-50	-8.615850e-47
Msa0177960	Msa0992550	0.801280	9.698720e-49	-8.615850e-47
Msa0179030	Msa0992550	0.812990	3.210365e-51	-8.615850e-47
Msa0202490	Msa0992550	0.814764	1.304694e-51	-8.615850e-47
Msa0218720	Msa0992550	0.871583	6.117797e-67	-8.615850e-47
Msa0218830	Msa0992550	0.842807	2.063370e-58	-8.615850e-47
Msa0230520	Msa0992550	0.840744	7.228549e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0992550	MtrunA17_Chr6g0475251	97.361	682	14	2	1	679	1	681	0.0	1333
Msa0992550	MtrunA17_Chr1g0204391	76.208	538	112	2	98	619	38	575	0.0	837
Msa0992550	MtrunA17_Chr7g0271121	38.499	613	325	16	103	679	100	696	3.07e-109	347
Msa0992550	MtrunA17_Chr1g0193491	44.565	368	194	6	118	481	128	489	5.39e-92	298
Msa0992550	MtrunA17_Chr5g0442191	42.347	392	211	8	92	478	69	450	7.28e-91	294
Msa0992550	MtrunA17_Chr3g0095031	41.969	386	211	6	97	478	83	459	3.99e-89	289
Msa0992550	MtrunA17_Chr5g0409981	37.736	371	210	7	118	472	110	475	1.91e-63	219
Msa0992550	MtrunA17_Chr6g0449911	38.032	376	209	10	93	457	150	512	2.94e-63	223
Msa0992550	MtrunA17_Chr2g0330401	35.294	391	232	7	94	472	82	463	3.25e-63	218
Msa0992550	MtrunA17_Chr2g0293631	38.922	334	190	5	128	457	520	843	2.78e-60	219

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0992550	AT5G62190.1	73.889	540	140	1	97	635	90	629	0.0	825
Msa0992550	AT5G26742.1	38.462	559	313	13	97	638	94	638	4.71e-102	328
Msa0992550	AT5G26742.2	38.462	559	313	13	97	638	94	638	4.82e-102	328
Msa0992550	AT5G26742.3	39.147	516	285	12	138	638	44	545	3.81e-97	313
Msa0992550	AT3G22330.1	44.162	394	204	7	89	478	93	474	7.65e-97	311
Msa0992550	AT3G22310.2	43.536	379	201	7	104	478	117	486	9.26e-95	305
Msa0992550	AT3G22310.1	43.536	379	201	7	104	478	117	486	1.36e-94	305
Msa0992550	AT1G55150.1	36.139	404	234	7	86	474	75	469	7.28e-68	231
Msa0992550	AT1G55150.2	36.139	404	234	7	86	474	100	494	4.71e-67	229
Msa0992550	AT1G31970.1	40.782	358	192	7	128	472	139	489	1.19e-66	229

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Find 205 sgRNAs with CRISPR-Local

Find 630 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGAGTTCGAAGAAA+AGG	0.379918	6_4:-61625161	Msa0992550:CDS
AAACAGTCATCAAAATTGTA+AGG	0.476266	6_4:+61619013	None:intergenic
AAAGCGAAGGTTGAAGAAGA+TGG	0.457702	6_4:-61625048	Msa0992550:CDS
AAAGTTCCGTGTCCTTGACG+AGG	0.668380	6_4:-61622252	Msa0992550:CDS
AAATTGCCAAAGCTATGGGT+GGG	0.576005	6_4:-61620203	Msa0992550:CDS
AACAAAGAGAGGAATCAAGT+GGG	0.680116	6_4:-61619274	Msa0992550:CDS
AACACTGAAGTTTAGTGTTG+TGG	0.552004	6_4:-61619099	Msa0992550:three_prime_UTR
AACCCTCCATCGAAGTCAGT+AGG	0.581789	6_4:+61619828	None:intergenic
AACCTAATGCTTACAATTTC+CGG	0.273773	6_4:+61618903	None:intergenic
AAGAAAACTGCAGATCTTGT+TGG	0.410659	6_4:-61621254	Msa0992550:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCAAACAAGCTCATAATA+TGG	+	chr6_4:61616576-61616595	None:intergenic	30.0%
GTCTGATTTATGAGATCAAT+GGG	-	chr6_4:61616651-61616670	Msa0992550:intron	30.0%
ACAAGATGCAAATTGGATTT+CGG	-	chr6_4:61616773-61616792	Msa0992550:intron	30.0%
GATTATCTGATGTTGAAATC+TGG	-	chr6_4:61616962-61616981	Msa0992550:intron	30.0%
AATTAATTCGGATACTTCGT+GGG	+	chr6_4:61617494-61617513	None:intergenic	30.0%
TAATTAATTCGGATACTTCG+TGG	+	chr6_4:61617495-61617514	None:intergenic	30.0%
GAGACAATGTTGTAAACATT+CGG	-	chr6_4:61617633-61617652	Msa0992550:intron	30.0%
AGCTAAATCAGTTAGAAAGA+TGG	-	chr6_4:61618347-61618366	Msa0992550:intron	30.0%
GCTAAATCAGTTAGAAAGAT+GGG	-	chr6_4:61618348-61618367	Msa0992550:intron	30.0%
AAACTAAGAAACTGACACAT+TGG	+	chr6_4:61618448-61618467	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	61615641	61625443	61615641	ID=Msa0992550;Name=Msa0992550
chr6_4	mRNA	61615641	61625443	61615641	ID=Msa0992550-mRNA-1;Parent=Msa0992550;Name=Msa0992550-mRNA-1;_AED=0.09;_eAED=0.09;_QI=136\|1\|1\|1\|0.92\|0.86\|15\|333\|679
chr6_4	exon	61615641	61615710	61615641	ID=Msa0992550-mRNA-1:exon:11908;Parent=Msa0992550-mRNA-1
chr6_4	exon	61618888	61619353	61618888	ID=Msa0992550-mRNA-1:exon:11907;Parent=Msa0992550-mRNA-1
chr6_4	exon	61619506	61619639	61619506	ID=Msa0992550-mRNA-1:exon:11906;Parent=Msa0992550-mRNA-1
chr6_4	exon	61619782	61619876	61619782	ID=Msa0992550-mRNA-1:exon:11905;Parent=Msa0992550-mRNA-1
chr6_4	exon	61619991	61620087	61619991	ID=Msa0992550-mRNA-1:exon:11904;Parent=Msa0992550-mRNA-1
chr6_4	exon	61620168	61620336	61620168	ID=Msa0992550-mRNA-1:exon:11903;Parent=Msa0992550-mRNA-1
chr6_4	exon	61620458	61620518	61620458	ID=Msa0992550-mRNA-1:exon:11902;Parent=Msa0992550-mRNA-1
chr6_4	exon	61620606	61620707	61620606	ID=Msa0992550-mRNA-1:exon:11901;Parent=Msa0992550-mRNA-1
chr6_4	exon	61620942	61621053	61620942	ID=Msa0992550-mRNA-1:exon:11900;Parent=Msa0992550-mRNA-1
chr6_4	exon	61621149	61621303	61621149	ID=Msa0992550-mRNA-1:exon:11899;Parent=Msa0992550-mRNA-1
chr6_4	exon	61621408	61621478	61621408	ID=Msa0992550-mRNA-1:exon:11898;Parent=Msa0992550-mRNA-1
chr6_4	exon	61622201	61622312	61622201	ID=Msa0992550-mRNA-1:exon:11897;Parent=Msa0992550-mRNA-1
chr6_4	exon	61622428	61622568	61622428	ID=Msa0992550-mRNA-1:exon:11896;Parent=Msa0992550-mRNA-1
chr6_4	exon	61622656	61622790	61622656	ID=Msa0992550-mRNA-1:exon:11895;Parent=Msa0992550-mRNA-1
chr6_4	exon	61624855	61625443	61624855	ID=Msa0992550-mRNA-1:exon:11894;Parent=Msa0992550-mRNA-1
chr6_4	five_prime_UTR	61625308	61625443	61625308	ID=Msa0992550-mRNA-1:five_prime_utr;Parent=Msa0992550-mRNA-1
chr6_4	CDS	61624855	61625307	61624855	ID=Msa0992550-mRNA-1:cds;Parent=Msa0992550-mRNA-1
chr6_4	CDS	61622656	61622790	61622656	ID=Msa0992550-mRNA-1:cds;Parent=Msa0992550-mRNA-1
chr6_4	CDS	61622428	61622568	61622428	ID=Msa0992550-mRNA-1:cds;Parent=Msa0992550-mRNA-1
chr6_4	CDS	61622201	61622312	61622201	ID=Msa0992550-mRNA-1:cds;Parent=Msa0992550-mRNA-1
chr6_4	CDS	61621408	61621478	61621408	ID=Msa0992550-mRNA-1:cds;Parent=Msa0992550-mRNA-1
chr6_4	CDS	61621149	61621303	61621149	ID=Msa0992550-mRNA-1:cds;Parent=Msa0992550-mRNA-1
chr6_4	CDS	61620942	61621053	61620942	ID=Msa0992550-mRNA-1:cds;Parent=Msa0992550-mRNA-1
chr6_4	CDS	61620606	61620707	61620606	ID=Msa0992550-mRNA-1:cds;Parent=Msa0992550-mRNA-1
chr6_4	CDS	61620458	61620518	61620458	ID=Msa0992550-mRNA-1:cds;Parent=Msa0992550-mRNA-1
chr6_4	CDS	61620168	61620336	61620168	ID=Msa0992550-mRNA-1:cds;Parent=Msa0992550-mRNA-1
chr6_4	CDS	61619991	61620087	61619991	ID=Msa0992550-mRNA-1:cds;Parent=Msa0992550-mRNA-1
chr6_4	CDS	61619782	61619876	61619782	ID=Msa0992550-mRNA-1:cds;Parent=Msa0992550-mRNA-1
chr6_4	CDS	61619506	61619639	61619506	ID=Msa0992550-mRNA-1:cds;Parent=Msa0992550-mRNA-1
chr6_4	CDS	61619151	61619353	61619151	ID=Msa0992550-mRNA-1:cds;Parent=Msa0992550-mRNA-1
chr6_4	three_prime_UTR	61618888	61619150	61618888	ID=Msa0992550-mRNA-1:three_prime_utr;Parent=Msa0992550-mRNA-1
chr6_4	three_prime_UTR	61615641	61615710	61615641	ID=Msa0992550-mRNA-1:three_prime_utr;Parent=Msa0992550-mRNA-1

Gene Sequence

>Msa0992550

ATGCCTTCACTACCTATCACAAACGACATCGTTTCAATGGAAAGTCCTAAATCAAAATCATCAAAAAAGAAAAAGCTTCTCCAAAACGACGTCGTTTCAGAACCCGACGCCGTTTCGGCGAAGAAAAAGGAGAGTTCGAAGAAAAGGAAGAAAAGTTCTGATGATGATGAAGAAACAAAGAGTGATATAAGCTCTGAAGAAGGTTCTAGAAAAGTGAAGAAGGAGAAAAAGAAGAAGAAAGCGAAGGTTGAAGAAGATGGAGAAGTTGGTGAAGAAGAAGAGGTTGTTGTGAAGAAAGATGATCCGAATGCGGTTTCGAATTTTAGGATTTCGGAACCGTTGAGGATGAAATTGAAGGAAAATAAGATTGAAGCTTTGTTTCCGATTCAAGCTATGACTTTTAATACTATTCTTGATGGGTCTGATTTGGTTGGTCGTGCTCGAACTGGACAGGGTAAAACTCTGGCATTTGTGTTGCCCATATTAGAATCATTGACAAATGGTCCAGCTAAATCAGTTAGAAAGATGGGCTATGGGAGAGTCCCAAGTGTTATCGTGCTTCTACCTACAAGGGAATTGGCCAATCAGGTGTATGCTGACTTCGAACTTTATGGTTCGTCCTTGGGATTGTCTGCTTGTGCTGTATATGGTGGAGCTCCATATGGCGCTCAGGAGACCAAACTTAGAAGGGGTGTTGATATAGTTATTGGAACACCAGGGCGTATTAAGGATCATATCGAGAGGGGGAATATTGACCTGAGCCACCTAAAGTTCCGTGTCCTTGACGAGGCAGATGAGATGTTGAGGATGGGTTTTGTTGATGATGTTGAACTCATTCTAGGTAAGGTACAAGATGTTACCAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCTAGTTGGGTTAAGCAAATTTCTACGAAATTTCTGAAAGCAGATAAGAAAACTGCAGATCTTGTTGGAAATGAGAAAATGAAAGCCAGCACCAATGTTAGGCATATTATCCTTCCATGTAATAGTACTGCTAGGGCACAGCTTATCCCTGATATTATTCGCTGTTATAGCAGTGGAGGCCGAACAATTATATTTGCGGAGAAAAAGGAGTCAGCTTCTGAGCTTGCTGGATTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAGTCACAACGTGAGATTACATTGAAAGGTTTTAGATCTGGGAAATTCATGACATTGGTGGCCACCAATGTTGCGGCCAGAGGTCTTGACATCAATGATGTTCAGTTGATTATCCAGTGTGAGCCTCCGCGGGATGTAGAAGCATATATACATCGATCTGGGCGGACAGGAAGAGCTGGCAACACCGGAGTTGCTGTGATGCTTTATGATCCCAGAAGGTCAAATATAGCTAAAATAGAAAGAGAAGCAGGTATAAAATTTGAACATGTATCTGCTCCTCAGCCTGATGAAATTGCCAAAGCTATGGGTGGGGATGCTGCTGAAATGATTACCGAAGTGTCTGACAGTGTGATTCCTGCATTCAAATCTGCTGCTGAAGAACTTTTGAACAACTCTGGTTTATCAGCTGTTGAGTTACTCGCAAAAGCTCTTGCAAAAGCTGTTGGTTATACTGAGGTAAAGAACAGATCCCTACTGACTTCGATGGAGGGTTATGTTACATTAATTCTGGAAGGAGGAAAACCTATGTTCACCCCATCCTTTGCATTTGGAACCTTGAGGAGATTCGTACCTGAGGATAAGGTCGACGCAGTGCAAGGTCTTGCTCTTACTGCAGATGGACAGGGTGCTGTTTTTGATGTACCAGCCAAGGACTTGGATATATTTCTCTCAAGTCAAAAGAATGCTGTTAATGTAAGCCTAAAGGTTGCTAAAGAATTGCCTAGTTTGCAACAAAGAGAGGAATCAAGTGGGCGCAGATTTGGTGGTGGTCGTGGATTTTCAGGTGGAAGAGGCGGAGGAGGCTATAGGTTTGGCGGAAGAGGTGGTGGAGGAAGAGGTTATGGTGGTGGCAGAGGAGGGGGAAACAGATGGTAA

Protein sequence

>Msa0992550

MPSLPITNDIVSMESPKSKSSKKKKLLQNDVVSEPDAVSAKKKESSKKRKKSSDDDEETKSDISSEEGSRKVKKEKKKKKAKVEEDGEVGEEEEVVVKKDDPNAVSNFRISEPLRMKLKENKIEALFPIQAMTFNTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKSVRKMGYGRVPSVIVLLPTRELANQVYADFELYGSSLGLSACAVYGGAPYGAQETKLRRGVDIVIGTPGRIKDHIERGNIDLSHLKFRVLDEADEMLRMGFVDDVELILGKVQDVTKVQTLLFSATLPSWVKQISTKFLKADKKTADLVGNEKMKASTNVRHIILPCNSTARAQLIPDIIRCYSSGGRTIIFAEKKESASELAGLLPGARALHGDIQQSQREITLKGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNIAKIEREAGIKFEHVSAPQPDEIAKAMGGDAAEMITEVSDSVIPAFKSAAEELLNNSGLSAVELLAKALAKAVGYTEVKNRSLLTSMEGYVTLILEGGKPMFTPSFAFGTLRRFVPEDKVDAVQGLALTADGQGAVFDVPAKDLDIFLSSQKNAVNVSLKVAKELPSLQQREESSGRRFGGGRGFSGGRGGGGYRFGGRGGGGRGYGGGRGGGNRW*