Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042780 | XP_003623305.1 | 100.000 | 234 | 0 | 0 | 1 | 234 | 161 | 394 | 1.32e-169 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042780 | sp|M1CZC0|EBP1_SOLTU | 88.053 | 226 | 26 | 1 | 1 | 225 | 161 | 386 | 7.76e-132 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042780 | G7KSA2 | 100.000 | 234 | 0 | 0 | 1 | 234 | 161 | 394 | 6.28e-170 | 483 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003780 | Msa1042780 | 0.820183 | 7.849162e-53 | -8.615850e-47 |
| Msa0045730 | Msa1042780 | 0.833982 | 3.898824e-56 | -8.615850e-47 |
| Msa0097580 | Msa1042780 | 0.800082 | 1.703151e-48 | -8.615850e-47 |
| Msa0622750 | Msa1042780 | 0.847312 | 1.252391e-59 | -8.615850e-47 |
| Msa0623200 | Msa1042780 | 0.824018 | 1.013284e-53 | -8.615850e-47 |
| Msa0698780 | Msa1042780 | 0.810753 | 9.854332e-51 | -8.615850e-47 |
| Msa0712610 | Msa1042780 | 0.817566 | 3.085677e-52 | -8.615850e-47 |
| Msa0792420 | Msa1042780 | 0.822218 | 2.664655e-53 | -8.615850e-47 |
| Msa0146340 | Msa1042780 | 0.846258 | 2.432165e-59 | -8.615850e-47 |
| Msa0229150 | Msa1042780 | 0.807140 | 5.846871e-50 | -8.615850e-47 |
| Msa0458370 | Msa1042780 | -0.804055 | 2.595306e-49 | -8.615850e-47 |
| Msa0980270 | Msa1042780 | 0.816672 | 4.901727e-52 | -8.615850e-47 |
| Msa1021120 | Msa1042780 | 0.817769 | 2.777272e-52 | -8.615850e-47 |
| Msa1042780 | Msa1058700 | 0.831848 | 1.322509e-55 | -8.615850e-47 |
| Msa1042780 | Msa1080350 | 0.804386 | 2.214948e-49 | -8.615850e-47 |
| Msa1042780 | Msa1123830 | 0.838935 | 2.139232e-57 | -8.615850e-47 |
| Msa1042780 | Msa1125860 | 0.805483 | 1.306319e-49 | -8.615850e-47 |
| Msa1042780 | Msa1152810 | 0.800868 | 1.177588e-48 | -8.615850e-47 |
| Msa1042780 | Msa1208020 | 0.819209 | 1.309486e-52 | -8.615850e-47 |
| Msa1042780 | Msa1321790 | 0.802065 | 6.694099e-49 | -8.615850e-47 |
| Msa1042780 | Msa1338190 | 0.836800 | 7.565086e-57 | -8.615850e-47 |
| Msa1042780 | Msa1356790 | 0.822859 | 1.890679e-53 | -8.615850e-47 |
| Msa1042780 | Msa1362790 | 0.816621 | 5.030838e-52 | -8.615850e-47 |
| Msa1042780 | Msa1369190 | 0.808394 | 3.164689e-50 | -8.615850e-47 |
| Msa1042780 | Msa1428810 | 0.801057 | 1.077441e-48 | -8.615850e-47 |
| Msa1042780 | Msa1437860 | 0.859006 | 5.573854e-63 | -8.615850e-47 |
| Msa1042780 | Msa1456050 | 0.820091 | 8.236324e-53 | -8.615850e-47 |
| Msa0250820 | Msa1042780 | 0.800327 | 1.518329e-48 | -8.615850e-47 |
| Msa0327330 | Msa1042780 | 0.822866 | 1.883031e-53 | -8.615850e-47 |
| Msa0348830 | Msa1042780 | 0.807075 | 6.034689e-50 | -8.615850e-47 |
| Msa0483110 | Msa1042780 | 0.832295 | 1.025748e-55 | -8.615850e-47 |
| Msa0546030 | Msa1042780 | 0.820189 | 7.820536e-53 | -8.615850e-47 |
| Msa0888810 | Msa1042780 | 0.820886 | 5.411833e-53 | -8.615850e-47 |
| Msa0943990 | Msa1042780 | 0.800082 | 1.703201e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042780 | MtrunA17_Chr7g0242891 | 100.000 | 234 | 0 | 0 | 1 | 234 | 161 | 394 | 1.21e-173 | 483 |
| Msa1042780 | MtrunA17_Chr2g0316491 | 86.325 | 234 | 27 | 1 | 1 | 234 | 161 | 389 | 7.62e-139 | 394 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042780 | AT3G51800.3 | 74.348 | 230 | 51 | 2 | 1 | 230 | 162 | 383 | 3.73e-119 | 345 |
| Msa1042780 | AT3G51800.1 | 76.087 | 230 | 54 | 1 | 1 | 230 | 162 | 390 | 6.84e-115 | 334 |
| Msa1042780 | AT3G51800.2 | 73.222 | 239 | 54 | 2 | 1 | 230 | 162 | 399 | 1.78e-111 | 326 |
Find 57 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTTGCAGCCTAAGTTAT+TGG | 0.168042 | 7_1:+81073855 | Msa1042780:intron |
| TCTGACACCCCTTTCAGTTT+TGG | 0.255511 | 7_1:+81074790 | Msa1042780:three_prime_UTR |
| ACCAAAATTCATATCCAAAA+AGG | 0.288538 | 7_1:-81074834 | None:intergenic |
| TAGAGTTACCTAGCAGAAAA+TGG | 0.347063 | 7_1:-81073988 | None:intergenic |
| CTAGCAGAAAATGGCATGAT+TGG | 0.364270 | 7_1:-81073979 | None:intergenic |
| AAGAGCTCGCCTTGGTTTAG+TGG | 0.392978 | 7_1:+81074108 | Msa1042780:CDS |
| ACACTCTTATTATAGGGCTT+TGG | 0.396279 | 7_1:+81074078 | Msa1042780:intron |
| GCCTCATTTGTTGAGTCCAC+TGG | 0.400790 | 7_1:-81074699 | None:intergenic |
| AAAACAGAAATTGTTATGCT+TGG | 0.409269 | 7_1:+81074911 | Msa1042780:three_prime_UTR |
| CTCTTATTATAGGGCTTTGG+AGG | 0.414338 | 7_1:+81074081 | Msa1042780:intron |
| CTTCTTTGTCTTTGTGCCCA+AGG | 0.418183 | 7_1:-81074409 | None:intergenic |
| TTGAAGCAGTTTGTGATTGA+CGG | 0.419108 | 7_1:+81073648 | Msa1042780:CDS |
| AGCAGACAACTATTTATAAG+AGG | 0.448471 | 7_1:+81073884 | Msa1042780:CDS |
| GGTTGATGATGCAGAGTTTG+AGG | 0.452257 | 7_1:+81073710 | Msa1042780:CDS |
| ACGGTCTTGTTAATGCCAAA+TGG | 0.460902 | 7_1:+81074303 | Msa1042780:CDS |
| GGCTAGCCATGCCTTGATCT+CGG | 0.460904 | 7_1:-81074388 | None:intergenic |
| CAATCACAAACTGCTTCAAT+TGG | 0.462473 | 7_1:-81073644 | None:intergenic |
| GCATCATCAACCCTTGTATC+CGG | 0.463945 | 7_1:-81073699 | None:intergenic |
| ATTGATATAGTGACAAGTAC+TGG | 0.464133 | 7_1:+81073750 | Msa1042780:CDS |
| TGTACTTAGTATCTCTAATC+CGG | 0.469904 | 7_1:+81073680 | Msa1042780:CDS |
| GTATCTCTAATCCGGATACA+AGG | 0.471369 | 7_1:+81073688 | Msa1042780:CDS |
| GCTAGCCATGCCTTGATCTC+GGG | 0.479085 | 7_1:-81074387 | None:intergenic |
| TGTTGCACACATCAAATTCA+CGG | 0.479497 | 7_1:+81074284 | Msa1042780:CDS |
| TCACAAACTGCTTCAATTGG+TGG | 0.483001 | 7_1:-81073641 | None:intergenic |
| GATCAAGGCATGGCTAGCCT+TGG | 0.487132 | 7_1:+81074392 | Msa1042780:CDS |
| AACAAATGAGGCCACATCTC+AGG | 0.488049 | 7_1:+81074710 | Msa1042780:CDS |
| GTGACGCGGTCCGATCCATT+TGG | 0.494501 | 7_1:-81074318 | None:intergenic |
| TGTATCTGATGCAATTCAAA+AGG | 0.498979 | 7_1:+81073575 | Msa1042780:CDS |
| GATAGATGATCCCGAGATCA+AGG | 0.503858 | 7_1:+81074377 | Msa1042780:CDS |
| ATCAAGGCATGGCTAGCCTT+GGG | 0.514968 | 7_1:+81074393 | Msa1042780:CDS |
| CCTGTTCTGCATGAAAAGCC+TGG | 0.520705 | 7_1:+81074163 | Msa1042780:CDS |
| ACAATGTACCAAAACTGAAA+GGG | 0.525017 | 7_1:-81074798 | None:intergenic |
| GACAGCAGAAGCTGAGCCAG+TGG | 0.530153 | 7_1:+81074683 | Msa1042780:CDS |
| GTCAATTCATTCCTGAGATG+TGG | 0.541149 | 7_1:-81074721 | None:intergenic |
| AACAATGTACCAAAACTGAA+AGG | 0.547449 | 7_1:-81074799 | None:intergenic |
| GACAAGTACTGGAGAAGGCA+AGG | 0.561868 | 7_1:+81073761 | Msa1042780:CDS |
| GTGGGCTGCAATTCTTGGAG+TGG | 0.565750 | 7_1:-81074348 | None:intergenic |
| GAGGAGAAAAGAGCTCGCCT+TGG | 0.572936 | 7_1:+81074100 | Msa1042780:CDS |
| GTTTGTGATTGACGGTAACA+AGG | 0.574284 | 7_1:+81073656 | Msa1042780:CDS |
| CTTGTTAATGCCAAATGGAT+CGG | 0.579184 | 7_1:+81074308 | Msa1042780:CDS |
| TGCCTATGATTGTAAAATTG+TGG | 0.582084 | 7_1:+81073605 | Msa1042780:CDS |
| GGCACAAAGACAAAGAAGAA+AGG | 0.585592 | 7_1:+81074414 | Msa1042780:CDS |
| GCAGACAACTATTTATAAGA+GGG | 0.589806 | 7_1:+81073885 | Msa1042780:CDS |
| GCCAGTGGACTCAACAAATG+AGG | 0.599556 | 7_1:+81074698 | Msa1042780:CDS |
| AAGACAAAGAAGAAAGGTGG+CGG | 0.600977 | 7_1:+81074420 | Msa1042780:CDS |
| ATAGTGACAAGTACTGGAGA+AGG | 0.607460 | 7_1:+81073756 | Msa1042780:CDS |
| TTCAGGTAAGAAAGAGGACA+AGG | 0.622867 | 7_1:+81074653 | Msa1042780:intron |
| CAATGTACCAAAACTGAAAG+GGG | 0.625114 | 7_1:-81074797 | None:intergenic |
| ACTTGAAGATGAAAGCATCT+CGG | 0.634545 | 7_1:+81073926 | Msa1042780:CDS |
| TATCTCTAATCCGGATACAA+GGG | 0.635855 | 7_1:+81073689 | Msa1042780:CDS |
| TGCTTCTCATCCAATAACTT+AGG | 0.637623 | 7_1:-81073865 | None:intergenic |
| ACAAAGACAAAGAAGAAAGG+TGG | 0.644797 | 7_1:+81074417 | Msa1042780:CDS |
| CTATGATTGTAAAATTGTGG+AGG | 0.650809 | 7_1:+81073608 | Msa1042780:CDS |
| TATGATTGTAAAATTGTGGA+GGG | 0.685880 | 7_1:+81073609 | Msa1042780:CDS |
| ATGATCCCGAGATCAAGGCA+TGG | 0.688022 | 7_1:+81074382 | Msa1042780:CDS |
| TCATACATTCCACTAAACCA+AGG | 0.697995 | 7_1:-81074117 | None:intergenic |
| GGAGTGGATGAGATGTGACG+CGG | 0.801724 | 7_1:-81074332 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAGTTCAATAATTCATA+TGG | - | chr7_1:81073828-81073847 | None:intergenic | 15.0% |
| !!! | ATGAAAAACATTTCTTTTTT+GGG | - | chr7_1:81074762-81074781 | None:intergenic | 15.0% |
| !!! | AATGAAAAACATTTCTTTTT+TGG | - | chr7_1:81074763-81074782 | None:intergenic | 15.0% |
| !! | TATTAGTTCAATAATTCATA+TGG | - | chr7_1:81073828-81073847 | None:intergenic | 15.0% |
| !!! | ATGAAAAACATTTCTTTTTT+GGG | - | chr7_1:81074762-81074781 | None:intergenic | 15.0% |
| !!! | AATGAAAAACATTTCTTTTT+TGG | - | chr7_1:81074763-81074782 | None:intergenic | 15.0% |
| !! | TACAATTACACTCTTATTAT+AGG | + | chr7_1:81074071-81074090 | Msa1042780:intron | 20.0% |
| !! | ACAATTACACTCTTATTATA+GGG | + | chr7_1:81074072-81074091 | Msa1042780:intron | 20.0% |
| !!! | TTCACTAAATTATACCTTTT+TGG | + | chr7_1:81074820-81074839 | Msa1042780:three_prime_UTR | 20.0% |
| !! | TACAATTACACTCTTATTAT+AGG | + | chr7_1:81074071-81074090 | Msa1042780:intron | 20.0% |
| !! | ACAATTACACTCTTATTATA+GGG | + | chr7_1:81074072-81074091 | Msa1042780:intron | 20.0% |
| !!! | TTCACTAAATTATACCTTTT+TGG | + | chr7_1:81074820-81074839 | Msa1042780:three_prime_UTR | 20.0% |
| ! | TATGATTGTAAAATTGTGGA+GGG | + | chr7_1:81073609-81073628 | Msa1042780:CDS | 25.0% |
| !!! | AATATTTTTTCAGCATGATG+TGG | + | chr7_1:81073800-81073819 | Msa1042780:intron | 25.0% |
| ! | AGTGGACATATAATCAAAAT+CGG | - | chr7_1:81074051-81074070 | None:intergenic | 25.0% |
| !! | AATAAGAGTGTAATTGTAAG+TGG | - | chr7_1:81074069-81074088 | None:intergenic | 25.0% |
| ! | TGCATATGATGTAATACTAT+AGG | + | chr7_1:81074594-81074613 | Msa1042780:intron | 25.0% |
| !! | ACCTTTTTGGATATGAATTT+TGG | + | chr7_1:81074833-81074852 | Msa1042780:three_prime_UTR | 25.0% |
| ! | ACCAAAATTCATATCCAAAA+AGG | - | chr7_1:81074837-81074856 | None:intergenic | 25.0% |
| ! | AAAACAGAAATTGTTATGCT+TGG | + | chr7_1:81074911-81074930 | Msa1042780:three_prime_UTR | 25.0% |
| ! | TATGATTGTAAAATTGTGGA+GGG | + | chr7_1:81073609-81073628 | Msa1042780:CDS | 25.0% |
| !!! | AATATTTTTTCAGCATGATG+TGG | + | chr7_1:81073800-81073819 | Msa1042780:intron | 25.0% |
| ! | AGTGGACATATAATCAAAAT+CGG | - | chr7_1:81074051-81074070 | None:intergenic | 25.0% |
| !! | AATAAGAGTGTAATTGTAAG+TGG | - | chr7_1:81074069-81074088 | None:intergenic | 25.0% |
| ! | TGCATATGATGTAATACTAT+AGG | + | chr7_1:81074594-81074613 | Msa1042780:intron | 25.0% |
| !! | ACCTTTTTGGATATGAATTT+TGG | + | chr7_1:81074833-81074852 | Msa1042780:three_prime_UTR | 25.0% |
| ! | ACCAAAATTCATATCCAAAA+AGG | - | chr7_1:81074837-81074856 | None:intergenic | 25.0% |
| ! | AAAACAGAAATTGTTATGCT+TGG | + | chr7_1:81074911-81074930 | Msa1042780:three_prime_UTR | 25.0% |
| TGTATCTGATGCAATTCAAA+AGG | + | chr7_1:81073575-81073594 | Msa1042780:CDS | 30.0% | |
| TGCCTATGATTGTAAAATTG+TGG | + | chr7_1:81073605-81073624 | Msa1042780:CDS | 30.0% | |
| ! | CTCCACAATTTTACAATCAT+AGG | - | chr7_1:81073610-81073629 | None:intergenic | 30.0% |
| CTATGATTGTAAAATTGTGG+AGG | + | chr7_1:81073608-81073627 | Msa1042780:CDS | 30.0% | |
| TGTACTTAGTATCTCTAATC+CGG | + | chr7_1:81073680-81073699 | Msa1042780:CDS | 30.0% | |
| ATTGATATAGTGACAAGTAC+TGG | + | chr7_1:81073750-81073769 | Msa1042780:CDS | 30.0% | |
| AGCAGACAACTATTTATAAG+AGG | + | chr7_1:81073884-81073903 | Msa1042780:CDS | 30.0% | |
| GCAGACAACTATTTATAAGA+GGG | + | chr7_1:81073885-81073904 | Msa1042780:CDS | 30.0% | |
| ! | ATGGCATGATTGGAAATTTT+TGG | - | chr7_1:81073972-81073991 | None:intergenic | 30.0% |
| ! | AAGCCTGGTAATTTTTCTAT+AGG | + | chr7_1:81074178-81074197 | Msa1042780:intron | 30.0% |
| TTGCCTATAGAAAAATTACC+AGG | - | chr7_1:81074184-81074203 | None:intergenic | 30.0% | |
| AACAGTATAGCAAGAAGTTT+AGG | - | chr7_1:81074247-81074266 | None:intergenic | 30.0% | |
| TAAATACAAAAGCGACATGA+TGG | - | chr7_1:81074529-81074548 | None:intergenic | 30.0% | |
| ! | TTTTTGTTCAGGTAAGAAAG+AGG | + | chr7_1:81074647-81074666 | Msa1042780:intron | 30.0% |
| !!! | CATTTCTTTTTTGGGATTGA+GGG | - | chr7_1:81074754-81074773 | None:intergenic | 30.0% |
| !!! | ACATTTCTTTTTTGGGATTG+AGG | - | chr7_1:81074755-81074774 | None:intergenic | 30.0% |
| ACAATGTACCAAAACTGAAA+GGG | - | chr7_1:81074801-81074820 | None:intergenic | 30.0% | |
| AACAATGTACCAAAACTGAA+AGG | - | chr7_1:81074802-81074821 | None:intergenic | 30.0% | |
| TGTATCTGATGCAATTCAAA+AGG | + | chr7_1:81073575-81073594 | Msa1042780:CDS | 30.0% | |
| TGCCTATGATTGTAAAATTG+TGG | + | chr7_1:81073605-81073624 | Msa1042780:CDS | 30.0% | |
| ! | CTCCACAATTTTACAATCAT+AGG | - | chr7_1:81073610-81073629 | None:intergenic | 30.0% |
| CTATGATTGTAAAATTGTGG+AGG | + | chr7_1:81073608-81073627 | Msa1042780:CDS | 30.0% | |
| TGTACTTAGTATCTCTAATC+CGG | + | chr7_1:81073680-81073699 | Msa1042780:CDS | 30.0% | |
| ATTGATATAGTGACAAGTAC+TGG | + | chr7_1:81073750-81073769 | Msa1042780:CDS | 30.0% | |
| AGCAGACAACTATTTATAAG+AGG | + | chr7_1:81073884-81073903 | Msa1042780:CDS | 30.0% | |
| GCAGACAACTATTTATAAGA+GGG | + | chr7_1:81073885-81073904 | Msa1042780:CDS | 30.0% | |
| ! | ATGGCATGATTGGAAATTTT+TGG | - | chr7_1:81073972-81073991 | None:intergenic | 30.0% |
| ! | AAGCCTGGTAATTTTTCTAT+AGG | + | chr7_1:81074178-81074197 | Msa1042780:intron | 30.0% |
| TTGCCTATAGAAAAATTACC+AGG | - | chr7_1:81074184-81074203 | None:intergenic | 30.0% | |
| AACAGTATAGCAAGAAGTTT+AGG | - | chr7_1:81074247-81074266 | None:intergenic | 30.0% | |
| TAAATACAAAAGCGACATGA+TGG | - | chr7_1:81074529-81074548 | None:intergenic | 30.0% | |
| ! | TTTTTGTTCAGGTAAGAAAG+AGG | + | chr7_1:81074647-81074666 | Msa1042780:intron | 30.0% |
| !!! | CATTTCTTTTTTGGGATTGA+GGG | - | chr7_1:81074754-81074773 | None:intergenic | 30.0% |
| !!! | ACATTTCTTTTTTGGGATTG+AGG | - | chr7_1:81074755-81074774 | None:intergenic | 30.0% |
| ACAATGTACCAAAACTGAAA+GGG | - | chr7_1:81074801-81074820 | None:intergenic | 30.0% | |
| AACAATGTACCAAAACTGAA+AGG | - | chr7_1:81074802-81074821 | None:intergenic | 30.0% | |
| CAATCACAAACTGCTTCAAT+TGG | - | chr7_1:81073647-81073666 | None:intergenic | 35.0% | |
| TTGAAGCAGTTTGTGATTGA+CGG | + | chr7_1:81073648-81073667 | Msa1042780:CDS | 35.0% | |
| TATCTCTAATCCGGATACAA+GGG | + | chr7_1:81073689-81073708 | Msa1042780:CDS | 35.0% | |
| TGCTTCTCATCCAATAACTT+AGG | - | chr7_1:81073868-81073887 | None:intergenic | 35.0% | |
| !! | ACTTGAAGATGAAAGCATCT+CGG | + | chr7_1:81073926-81073945 | Msa1042780:CDS | 35.0% |
| TAGAGTTACCTAGCAGAAAA+TGG | - | chr7_1:81073991-81074010 | None:intergenic | 35.0% | |
| ACACTCTTATTATAGGGCTT+TGG | + | chr7_1:81074078-81074097 | Msa1042780:intron | 35.0% | |
| TCATACATTCCACTAAACCA+AGG | - | chr7_1:81074120-81074139 | None:intergenic | 35.0% | |
| ! | TTTTCATGCAGAACAGGATA+TGG | - | chr7_1:81074160-81074179 | None:intergenic | 35.0% |
| AACATGAACAGTTCCACAAT+TGG | + | chr7_1:81074205-81074224 | Msa1042780:intron | 35.0% | |
| ACATGAACAGTTCCACAATT+GGG | + | chr7_1:81074206-81074225 | Msa1042780:intron | 35.0% | |
| TGCTATACTGTTTCCTTATC+AGG | + | chr7_1:81074255-81074274 | Msa1042780:intron | 35.0% | |
| TGCAACAAAATCACCTGATA+AGG | - | chr7_1:81074271-81074290 | None:intergenic | 35.0% | |
| TGTTGCACACATCAAATTCA+CGG | + | chr7_1:81074284-81074303 | Msa1042780:CDS | 35.0% | |
| CTTGTTAATGCCAAATGGAT+CGG | + | chr7_1:81074308-81074327 | Msa1042780:CDS | 35.0% | |
| !! | GGATCATCTATCGTTTTTGT+GGG | - | chr7_1:81074369-81074388 | None:intergenic | 35.0% |
| ACAAAGACAAAGAAGAAAGG+TGG | + | chr7_1:81074417-81074436 | Msa1042780:CDS | 35.0% | |
| AAGAAGAAAAAAGGTAGGCT+TGG | + | chr7_1:81074444-81074463 | Msa1042780:intron | 35.0% | |
| ! | CGACATGATGGAACAAAAAT+AGG | - | chr7_1:81074517-81074536 | None:intergenic | 35.0% |
| !! | CATATGCTTTCTGAAATGCA+TGG | + | chr7_1:81074567-81074586 | Msa1042780:intron | 35.0% |
| !! | GATGCTTTGTGTTTTTGTTC+AGG | + | chr7_1:81074636-81074655 | Msa1042780:intron | 35.0% |
| CAATGTACCAAAACTGAAAG+GGG | - | chr7_1:81074800-81074819 | None:intergenic | 35.0% | |
| CAATCACAAACTGCTTCAAT+TGG | - | chr7_1:81073647-81073666 | None:intergenic | 35.0% | |
| TTGAAGCAGTTTGTGATTGA+CGG | + | chr7_1:81073648-81073667 | Msa1042780:CDS | 35.0% | |
| TATCTCTAATCCGGATACAA+GGG | + | chr7_1:81073689-81073708 | Msa1042780:CDS | 35.0% | |
| TGCTTCTCATCCAATAACTT+AGG | - | chr7_1:81073868-81073887 | None:intergenic | 35.0% | |
| !! | ACTTGAAGATGAAAGCATCT+CGG | + | chr7_1:81073926-81073945 | Msa1042780:CDS | 35.0% |
| TAGAGTTACCTAGCAGAAAA+TGG | - | chr7_1:81073991-81074010 | None:intergenic | 35.0% | |
| ACACTCTTATTATAGGGCTT+TGG | + | chr7_1:81074078-81074097 | Msa1042780:intron | 35.0% | |
| TCATACATTCCACTAAACCA+AGG | - | chr7_1:81074120-81074139 | None:intergenic | 35.0% | |
| ! | TTTTCATGCAGAACAGGATA+TGG | - | chr7_1:81074160-81074179 | None:intergenic | 35.0% |
| AACATGAACAGTTCCACAAT+TGG | + | chr7_1:81074205-81074224 | Msa1042780:intron | 35.0% | |
| ACATGAACAGTTCCACAATT+GGG | + | chr7_1:81074206-81074225 | Msa1042780:intron | 35.0% | |
| TGCTATACTGTTTCCTTATC+AGG | + | chr7_1:81074255-81074274 | Msa1042780:intron | 35.0% | |
| TGCAACAAAATCACCTGATA+AGG | - | chr7_1:81074271-81074290 | None:intergenic | 35.0% | |
| TGTTGCACACATCAAATTCA+CGG | + | chr7_1:81074284-81074303 | Msa1042780:CDS | 35.0% | |
| CTTGTTAATGCCAAATGGAT+CGG | + | chr7_1:81074308-81074327 | Msa1042780:CDS | 35.0% | |
| !! | GGATCATCTATCGTTTTTGT+GGG | - | chr7_1:81074369-81074388 | None:intergenic | 35.0% |
| ACAAAGACAAAGAAGAAAGG+TGG | + | chr7_1:81074417-81074436 | Msa1042780:CDS | 35.0% | |
| AAGAAGAAAAAAGGTAGGCT+TGG | + | chr7_1:81074444-81074463 | Msa1042780:intron | 35.0% | |
| ! | CGACATGATGGAACAAAAAT+AGG | - | chr7_1:81074517-81074536 | None:intergenic | 35.0% |
| !! | CATATGCTTTCTGAAATGCA+TGG | + | chr7_1:81074567-81074586 | Msa1042780:intron | 35.0% |
| !! | GATGCTTTGTGTTTTTGTTC+AGG | + | chr7_1:81074636-81074655 | Msa1042780:intron | 35.0% |
| CAATGTACCAAAACTGAAAG+GGG | - | chr7_1:81074800-81074819 | None:intergenic | 35.0% | |
| TCACAAACTGCTTCAATTGG+TGG | - | chr7_1:81073644-81073663 | None:intergenic | 40.0% | |
| GTTTGTGATTGACGGTAACA+AGG | + | chr7_1:81073656-81073675 | Msa1042780:CDS | 40.0% | |
| GTATCTCTAATCCGGATACA+AGG | + | chr7_1:81073688-81073707 | Msa1042780:CDS | 40.0% | |
| !! | ATAGTGACAAGTACTGGAGA+AGG | + | chr7_1:81073756-81073775 | Msa1042780:CDS | 40.0% |
| TCCAATAACTTAGGCTGCAA+GGG | - | chr7_1:81073859-81073878 | None:intergenic | 40.0% | |
| ATCCAATAACTTAGGCTGCA+AGG | - | chr7_1:81073860-81073879 | None:intergenic | 40.0% | |
| CTAGCAGAAAATGGCATGAT+TGG | - | chr7_1:81073982-81074001 | None:intergenic | 40.0% | |
| !!! | CAATCATGCCATTTTCTGCT+AGG | + | chr7_1:81073980-81073999 | Msa1042780:CDS | 40.0% |
| ! | CTCTTATTATAGGGCTTTGG+AGG | + | chr7_1:81074081-81074100 | Msa1042780:intron | 40.0% |
| ATAGGAACACAACCCAATTG+TGG | - | chr7_1:81074221-81074240 | None:intergenic | 40.0% | |
| AGCAAGAAGTTTAGGCTCAT+AGG | - | chr7_1:81074239-81074258 | None:intergenic | 40.0% | |
| !! | ACGGTCTTGTTAATGCCAAA+TGG | + | chr7_1:81074303-81074322 | Msa1042780:CDS | 40.0% |
| !! | TTTTTGTGGGCTGCAATTCT+TGG | - | chr7_1:81074356-81074375 | None:intergenic | 40.0% |
| !! | GGGATCATCTATCGTTTTTG+TGG | - | chr7_1:81074370-81074389 | None:intergenic | 40.0% |
| GGCACAAAGACAAAGAAGAA+AGG | + | chr7_1:81074414-81074433 | Msa1042780:CDS | 40.0% | |
| AAGACAAAGAAGAAAGGTGG+CGG | + | chr7_1:81074420-81074439 | Msa1042780:CDS | 40.0% | |
| GCGGAAAGAAGAAAAAAGGT+AGG | + | chr7_1:81074439-81074458 | Msa1042780:intron | 40.0% | |
| TTCAGGTAAGAAAGAGGACA+AGG | + | chr7_1:81074653-81074672 | Msa1042780:intron | 40.0% | |
| GTCAATTCATTCCTGAGATG+TGG | - | chr7_1:81074724-81074743 | None:intergenic | 40.0% | |
| !!! | TTTTTTGGGATTGAGGGTGA+GGG | - | chr7_1:81074748-81074767 | None:intergenic | 40.0% |
| TCACAAACTGCTTCAATTGG+TGG | - | chr7_1:81073644-81073663 | None:intergenic | 40.0% | |
| GTTTGTGATTGACGGTAACA+AGG | + | chr7_1:81073656-81073675 | Msa1042780:CDS | 40.0% | |
| GTATCTCTAATCCGGATACA+AGG | + | chr7_1:81073688-81073707 | Msa1042780:CDS | 40.0% | |
| !! | ATAGTGACAAGTACTGGAGA+AGG | + | chr7_1:81073756-81073775 | Msa1042780:CDS | 40.0% |
| TCCAATAACTTAGGCTGCAA+GGG | - | chr7_1:81073859-81073878 | None:intergenic | 40.0% | |
| ATCCAATAACTTAGGCTGCA+AGG | - | chr7_1:81073860-81073879 | None:intergenic | 40.0% | |
| CTAGCAGAAAATGGCATGAT+TGG | - | chr7_1:81073982-81074001 | None:intergenic | 40.0% | |
| !!! | CAATCATGCCATTTTCTGCT+AGG | + | chr7_1:81073980-81073999 | Msa1042780:CDS | 40.0% |
| ! | CTCTTATTATAGGGCTTTGG+AGG | + | chr7_1:81074081-81074100 | Msa1042780:intron | 40.0% |
| ATAGGAACACAACCCAATTG+TGG | - | chr7_1:81074221-81074240 | None:intergenic | 40.0% | |
| AGCAAGAAGTTTAGGCTCAT+AGG | - | chr7_1:81074239-81074258 | None:intergenic | 40.0% | |
| !! | ACGGTCTTGTTAATGCCAAA+TGG | + | chr7_1:81074303-81074322 | Msa1042780:CDS | 40.0% |
| !! | TTTTTGTGGGCTGCAATTCT+TGG | - | chr7_1:81074356-81074375 | None:intergenic | 40.0% |
| !! | GGGATCATCTATCGTTTTTG+TGG | - | chr7_1:81074370-81074389 | None:intergenic | 40.0% |
| GGCACAAAGACAAAGAAGAA+AGG | + | chr7_1:81074414-81074433 | Msa1042780:CDS | 40.0% | |
| AAGACAAAGAAGAAAGGTGG+CGG | + | chr7_1:81074420-81074439 | Msa1042780:CDS | 40.0% | |
| GCGGAAAGAAGAAAAAAGGT+AGG | + | chr7_1:81074439-81074458 | Msa1042780:intron | 40.0% | |
| TTCAGGTAAGAAAGAGGACA+AGG | + | chr7_1:81074653-81074672 | Msa1042780:intron | 40.0% | |
| GTCAATTCATTCCTGAGATG+TGG | - | chr7_1:81074724-81074743 | None:intergenic | 40.0% | |
| !!! | TTTTTTGGGATTGAGGGTGA+GGG | - | chr7_1:81074748-81074767 | None:intergenic | 40.0% |
| GCATCATCAACCCTTGTATC+CGG | - | chr7_1:81073702-81073721 | None:intergenic | 45.0% | |
| !! | GGTTGATGATGCAGAGTTTG+AGG | + | chr7_1:81073710-81073729 | Msa1042780:CDS | 45.0% |
| TCCCTTGCAGCCTAAGTTAT+TGG | + | chr7_1:81073855-81073874 | Msa1042780:intron | 45.0% | |
| GATAGATGATCCCGAGATCA+AGG | + | chr7_1:81074377-81074396 | Msa1042780:CDS | 45.0% | |
| CTTCTTTGTCTTTGTGCCCA+AGG | - | chr7_1:81074412-81074431 | None:intergenic | 45.0% | |
| !! | GGTGGCGGAAAGAAGAAAAA+AGG | + | chr7_1:81074435-81074454 | Msa1042780:CDS | 45.0% |
| AACAAATGAGGCCACATCTC+AGG | + | chr7_1:81074710-81074729 | Msa1042780:CDS | 45.0% | |
| !!! | CTTTTTTGGGATTGAGGGTG+AGG | - | chr7_1:81074749-81074768 | None:intergenic | 45.0% |
| ! | TCTGACACCCCTTTCAGTTT+TGG | + | chr7_1:81074790-81074809 | Msa1042780:three_prime_UTR | 45.0% |
| GCATCATCAACCCTTGTATC+CGG | - | chr7_1:81073702-81073721 | None:intergenic | 45.0% | |
| !! | GGTTGATGATGCAGAGTTTG+AGG | + | chr7_1:81073710-81073729 | Msa1042780:CDS | 45.0% |
| TCCCTTGCAGCCTAAGTTAT+TGG | + | chr7_1:81073855-81073874 | Msa1042780:intron | 45.0% | |
| GATAGATGATCCCGAGATCA+AGG | + | chr7_1:81074377-81074396 | Msa1042780:CDS | 45.0% | |
| CTTCTTTGTCTTTGTGCCCA+AGG | - | chr7_1:81074412-81074431 | None:intergenic | 45.0% | |
| !! | GGTGGCGGAAAGAAGAAAAA+AGG | + | chr7_1:81074435-81074454 | Msa1042780:CDS | 45.0% |
| AACAAATGAGGCCACATCTC+AGG | + | chr7_1:81074710-81074729 | Msa1042780:CDS | 45.0% | |
| !!! | CTTTTTTGGGATTGAGGGTG+AGG | - | chr7_1:81074749-81074768 | None:intergenic | 45.0% |
| ! | TCTGACACCCCTTTCAGTTT+TGG | + | chr7_1:81074790-81074809 | Msa1042780:three_prime_UTR | 45.0% |
| !! | GACAAGTACTGGAGAAGGCA+AGG | + | chr7_1:81073761-81073780 | Msa1042780:CDS | 50.0% |
| ! | AGTACTGGAGAAGGCAAGGT+AGG | + | chr7_1:81073765-81073784 | Msa1042780:intron | 50.0% |
| AAGAGCTCGCCTTGGTTTAG+TGG | + | chr7_1:81074108-81074127 | Msa1042780:CDS | 50.0% | |
| ! | CCAGGCTTTTCATGCAGAAC+AGG | - | chr7_1:81074166-81074185 | None:intergenic | 50.0% |
| CCTGTTCTGCATGAAAAGCC+TGG | + | chr7_1:81074163-81074182 | Msa1042780:CDS | 50.0% | |
| ATGATCCCGAGATCAAGGCA+TGG | + | chr7_1:81074382-81074401 | Msa1042780:CDS | 50.0% | |
| !! | ATCAAGGCATGGCTAGCCTT+GGG | + | chr7_1:81074393-81074412 | Msa1042780:CDS | 50.0% |
| ! | GCCAGTGGACTCAACAAATG+AGG | + | chr7_1:81074698-81074717 | Msa1042780:CDS | 50.0% |
| ! | GCCTCATTTGTTGAGTCCAC+TGG | - | chr7_1:81074702-81074721 | None:intergenic | 50.0% |
| !! | GACAAGTACTGGAGAAGGCA+AGG | + | chr7_1:81073761-81073780 | Msa1042780:CDS | 50.0% |
| ! | AGTACTGGAGAAGGCAAGGT+AGG | + | chr7_1:81073765-81073784 | Msa1042780:intron | 50.0% |
| AAGAGCTCGCCTTGGTTTAG+TGG | + | chr7_1:81074108-81074127 | Msa1042780:CDS | 50.0% | |
| ! | CCAGGCTTTTCATGCAGAAC+AGG | - | chr7_1:81074166-81074185 | None:intergenic | 50.0% |
| CCTGTTCTGCATGAAAAGCC+TGG | + | chr7_1:81074163-81074182 | Msa1042780:CDS | 50.0% | |
| ATGATCCCGAGATCAAGGCA+TGG | + | chr7_1:81074382-81074401 | Msa1042780:CDS | 50.0% | |
| !! | ATCAAGGCATGGCTAGCCTT+GGG | + | chr7_1:81074393-81074412 | Msa1042780:CDS | 50.0% |
| ! | GCCAGTGGACTCAACAAATG+AGG | + | chr7_1:81074698-81074717 | Msa1042780:CDS | 50.0% |
| ! | GCCTCATTTGTTGAGTCCAC+TGG | - | chr7_1:81074702-81074721 | None:intergenic | 50.0% |
| GAGGAGAAAAGAGCTCGCCT+TGG | + | chr7_1:81074100-81074119 | Msa1042780:CDS | 55.0% | |
| GGAGTGGATGAGATGTGACG+CGG | - | chr7_1:81074335-81074354 | None:intergenic | 55.0% | |
| ! | GTGGGCTGCAATTCTTGGAG+TGG | - | chr7_1:81074351-81074370 | None:intergenic | 55.0% |
| GCTAGCCATGCCTTGATCTC+GGG | - | chr7_1:81074390-81074409 | None:intergenic | 55.0% | |
| ! | GGCTAGCCATGCCTTGATCT+CGG | - | chr7_1:81074391-81074410 | None:intergenic | 55.0% |
| !! | GATCAAGGCATGGCTAGCCT+TGG | + | chr7_1:81074392-81074411 | Msa1042780:CDS | 55.0% |
| GAGGAGAAAAGAGCTCGCCT+TGG | + | chr7_1:81074100-81074119 | Msa1042780:CDS | 55.0% | |
| GGAGTGGATGAGATGTGACG+CGG | - | chr7_1:81074335-81074354 | None:intergenic | 55.0% | |
| ! | GTGGGCTGCAATTCTTGGAG+TGG | - | chr7_1:81074351-81074370 | None:intergenic | 55.0% |
| GCTAGCCATGCCTTGATCTC+GGG | - | chr7_1:81074390-81074409 | None:intergenic | 55.0% | |
| ! | GGCTAGCCATGCCTTGATCT+CGG | - | chr7_1:81074391-81074410 | None:intergenic | 55.0% |
| !! | GATCAAGGCATGGCTAGCCT+TGG | + | chr7_1:81074392-81074411 | Msa1042780:CDS | 55.0% |
| GTGACGCGGTCCGATCCATT+TGG | - | chr7_1:81074321-81074340 | None:intergenic | 60.0% | |
| GACAGCAGAAGCTGAGCCAG+TGG | + | chr7_1:81074683-81074702 | Msa1042780:CDS | 60.0% | |
| GTGACGCGGTCCGATCCATT+TGG | - | chr7_1:81074321-81074340 | None:intergenic | 60.0% | |
| GACAGCAGAAGCTGAGCCAG+TGG | + | chr7_1:81074683-81074702 | Msa1042780:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 81073567 | 81074973 | 81073567 | ID=Msa1042780;Name=Msa1042780 |
| chr7_1 | mRNA | 81073567 | 81074973 | 81073567 | ID=Msa1042780-mRNA-1;Parent=Msa1042780;Name=Msa1042780-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|1|1|1|1|5|236|234 |
| chr7_1 | exon | 81073567 | 81073782 | 81073567 | ID=Msa1042780-mRNA-1:exon:22089;Parent=Msa1042780-mRNA-1 |
| chr7_1 | exon | 81073865 | 81074001 | 81073865 | ID=Msa1042780-mRNA-1:exon:22090;Parent=Msa1042780-mRNA-1 |
| chr7_1 | exon | 81074093 | 81074184 | 81074093 | ID=Msa1042780-mRNA-1:exon:22091;Parent=Msa1042780-mRNA-1 |
| chr7_1 | exon | 81074277 | 81074456 | 81074277 | ID=Msa1042780-mRNA-1:exon:22092;Parent=Msa1042780-mRNA-1 |
| chr7_1 | exon | 81074658 | 81074973 | 81074658 | ID=Msa1042780-mRNA-1:exon:22093;Parent=Msa1042780-mRNA-1 |
| chr7_1 | CDS | 81073567 | 81073782 | 81073567 | ID=Msa1042780-mRNA-1:cds;Parent=Msa1042780-mRNA-1 |
| chr7_1 | CDS | 81073865 | 81074001 | 81073865 | ID=Msa1042780-mRNA-1:cds;Parent=Msa1042780-mRNA-1 |
| chr7_1 | CDS | 81074093 | 81074184 | 81074093 | ID=Msa1042780-mRNA-1:cds;Parent=Msa1042780-mRNA-1 |
| chr7_1 | CDS | 81074277 | 81074456 | 81074277 | ID=Msa1042780-mRNA-1:cds;Parent=Msa1042780-mRNA-1 |
| chr7_1 | CDS | 81074658 | 81074737 | 81074658 | ID=Msa1042780-mRNA-1:cds;Parent=Msa1042780-mRNA-1 |
| chr7_1 | three_prime_UTR | 81074738 | 81074973 | 81074738 | ID=Msa1042780-mRNA-1:three_prime_utr;Parent=Msa1042780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
