AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0431710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0431710 MtrunA17_Chr6g0473061 97.701 87 2 0 1 87 1 87 4.39e-56 181
Msa0431710 MtrunA17_Chr3g0136481 97.701 87 2 0 1 87 1 87 5.03e-56 181
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0431710 AT2G26270.1 54.255 94 33 2 1 92 1 86 1.08e-24 96.7
Msa0431710 AT3G43930.3 52.000 100 38 2 1 90 1 100 2.05e-23 91.3
Msa0431710 AT3G43930.1 52.000 100 38 2 1 90 1 100 2.91e-23 92.4
Msa0431710 AT3G43930.2 52.000 100 38 2 1 90 1 100 2.94e-23 92.4

Find 179 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATAGTTTGAAGAATTA+TGG 0.150732 3_2:-83776377 Msa0431710:three_prime_UTR
TATGCAGAACAAACCGTATT+TGG 0.153983 3_2:+83777958 None:intergenic
TACGGTCATCTATAGTATTT+TGG 0.194222 3_2:-83773733 Msa0431710:three_prime_UTR
TGTATTCACAGTCCCCATTT+TGG 0.213595 3_2:+83773965 None:intergenic
GAAAATTAAGAGAGGGTAAA+AGG 0.221597 3_2:+83778009 None:intergenic
GATGAGTATGCTTGATTTCA+TGG 0.230447 3_2:+83776276 None:intergenic
CTGATGCTTGATGACATTTC+AGG 0.260903 3_2:-83775549 Msa0431710:three_prime_UTR
CAGGGCAGTAAAAGTGAAAT+TGG 0.280733 3_2:-83775325 Msa0431710:three_prime_UTR
GATAGAGTCCAGAAGGTTAT+TGG 0.281598 3_2:+83774854 None:intergenic
TGCCAAACTAGCACCTTCTT+TGG 0.298759 3_2:+83775992 None:intergenic
CTTGAGTAGGGTGCCCAAAA+TGG 0.298928 3_2:-83773979 Msa0431710:three_prime_UTR
GAGAACAACCTTTCTGTTAG+AGG 0.306209 3_2:+83774681 None:intergenic
TTACGAACCACTTGAACTTT+TGG 0.310539 3_2:-83773767 Msa0431710:three_prime_UTR
AAAAGTCCATGACGATCTTC+AGG 0.319631 3_2:-83775344 Msa0431710:three_prime_UTR
AACAAACCGTATTTGGAAAA+AGG 0.321948 3_2:+83777965 None:intergenic
TTGTGTGAGAGAAGTAATTT+TGG 0.327368 3_2:-83777069 Msa0431710:three_prime_UTR
ACTGAAAGAGTCTGTGTAAA+TGG 0.327959 3_2:+83774797 None:intergenic
TGTTAGCATGTCTGTTGATT+TGG 0.329381 3_2:-83775586 Msa0431710:three_prime_UTR
ATAAAGTAGAAATACTGATA+TGG 0.331846 3_2:+83777044 None:intergenic
CAATTCACAATTGACAAAAC+TGG 0.339488 3_2:-83776854 Msa0431710:three_prime_UTR
GGTAAAAGGGGTTATAGAAT+TGG 0.340052 3_2:+83778023 None:intergenic
TTTATAGTTTGAAGAATTAT+GGG 0.341154 3_2:-83776376 Msa0431710:three_prime_UTR
GGAAGAGTATGGTGAGAAAA+TGG 0.345135 3_2:+83774556 None:intergenic
TTTAACATATAGCACAGTTT+TGG 0.346095 3_2:-83776691 Msa0431710:three_prime_UTR
CTCTATCTGTTGGTCAATAT+CGG 0.352911 3_2:-83774838 Msa0431710:three_prime_UTR
TTGATTTCATGGATTCTTGC+AGG 0.362130 3_2:+83776287 None:intergenic
AAAATTCAAGATGATTTAGA+AGG 0.363830 3_2:+83777214 None:intergenic
GATGCAGATTGGGGCTATAC+TGG 0.365924 3_2:+83777272 None:intergenic
GGTCTTGTTATATGTGTTAC+CGG 0.369177 3_2:-83777566 Msa0431710:CDS
ATCCAAAGAAGGTGCTAGTT+TGG 0.369729 3_2:-83775994 Msa0431710:three_prime_UTR
TCATATCCATGCATATTATC+AGG 0.375937 3_2:-83774451 Msa0431710:intron
GATTACACCCAATAACCTTC+TGG 0.380114 3_2:-83774862 Msa0431710:three_prime_UTR
ATCTCGGTATTGTTAAATAG+TGG 0.385875 3_2:-83777023 Msa0431710:three_prime_UTR
TGGTGGTAAGTAACAGTTAT+GGG 0.387787 3_2:-83777728 Msa0431710:exon
TTGAGTAGGGTGCCCAAAAT+GGG 0.388027 3_2:-83773978 Msa0431710:three_prime_UTR
TGCAGAGTCTAACAGAAGTT+TGG 0.395732 3_2:-83776225 Msa0431710:three_prime_UTR
GTACATTGAGGATGCAGATT+GGG 0.398670 3_2:+83777262 None:intergenic
TGCAATTCGGATGAAATGCC+TGG 0.401863 3_2:+83776167 None:intergenic
TTTGGCAGAAGCAAGGAATC+AGG 0.406989 3_2:-83777323 Msa0431710:intron
TCGATCAGTTTACTCAAGTA+AGG 0.418161 3_2:-83774236 Msa0431710:three_prime_UTR
GAAGAATTTCGAAGATTCTC+TGG 0.419860 3_2:-83776248 Msa0431710:three_prime_UTR
TGTCACACTGGGTTGGTTTG+TGG 0.422711 3_2:-83776614 Msa0431710:three_prime_UTR
ACATCCATTCAAAGATATCT+TGG 0.423871 3_2:-83775921 Msa0431710:three_prime_UTR
AAAATTAAGAGAGGGTAAAA+GGG 0.424229 3_2:+83778010 None:intergenic
AGTTTGGACTCAAGTTTGTC+TGG 0.430371 3_2:-83776209 Msa0431710:three_prime_UTR
AGTAAAGGACAATAAGAAAA+GGG 0.431926 3_2:+83778092 None:intergenic
GCATCCTCAATGTACTCATT+TGG 0.432536 3_2:-83777254 Msa0431710:CDS
TTGTGAATTGCAGAAAATAG+AGG 0.434508 3_2:+83776867 None:intergenic
GGCCTCTTTGTTGTCACACT+GGG 0.434913 3_2:-83776625 Msa0431710:three_prime_UTR
AAGTAAAGGACAATAAGAAA+AGG 0.436020 3_2:+83778091 None:intergenic
GAATCGCCACATCTATTTCA+AGG 0.441565 3_2:+83774287 None:intergenic
GGGACTGTGAATACAAGAAA+TGG 0.443737 3_2:-83773957 Msa0431710:three_prime_UTR
ATCCACACCTTTAGATAAAC+CGG 0.444295 3_2:+83777547 None:intergenic
AGAAGGTTATTGGGTGTAAT+CGG 0.444905 3_2:+83774864 None:intergenic
CTTCAAACTATAAAGTGATT+CGG 0.448581 3_2:+83776385 None:intergenic
AATGCCTGGATCAACGTAGA+TGG 0.449609 3_2:+83776181 None:intergenic
CCAGCAAAAGGAGCATTTGA+TGG 0.452352 3_2:+83777587 None:intergenic
TCCTCAATGTACTCATTTGG+TGG 0.452439 3_2:-83777251 Msa0431710:CDS
TGTGTTACCGGTTTATCTAA+AGG 0.452554 3_2:-83777554 Msa0431710:intron
CTTGAAGTCATGCACTATAC+AGG 0.453779 3_2:-83776516 Msa0431710:three_prime_UTR
ATAGAGTCCAGAAGGTTATT+GGG 0.457546 3_2:+83774855 None:intergenic
CTGAAATGTCATCAAGCATC+AGG 0.464163 3_2:+83775550 None:intergenic
ATCTCGGAAAACCGGTCCAC+AGG 0.464717 3_2:+83774534 None:intergenic
TTGGCAGACCAATGGTTTGT+TGG 0.465550 3_2:-83775975 Msa0431710:three_prime_UTR
AATCAGATCTCTTCAACCAT+TGG 0.465979 3_2:-83777645 Msa0431710:CDS
ATGTGTATGAGTTATTACTT+AGG 0.468174 3_2:-83774111 Msa0431710:three_prime_UTR
TAAAGTAGAAATACTGATAT+GGG 0.475297 3_2:+83777045 None:intergenic
TGCCATCTGTTTCCACAGCA+TGG 0.475634 3_2:-83776741 Msa0431710:three_prime_UTR
TGCTCCATCTACGTTGATCC+AGG 0.475904 3_2:-83776185 Msa0431710:three_prime_UTR
TTACACCCCAAGTCTTCAAA+AGG 0.477167 3_2:-83773906 Msa0431710:three_prime_UTR
TGATGCAAAAGGGGATGAGA+AGG 0.477811 3_2:-83774736 Msa0431710:three_prime_UTR
CATCAGCATGATGCTGTAGT+AGG 0.481432 3_2:-83777176 Msa0431710:three_prime_UTR
GAAGACATGTAAAACCGTTA+TGG 0.482418 3_2:+83774484 None:intergenic
GAGTTATTACTTAGGGCATA+AGG 0.483600 3_2:-83774103 Msa0431710:three_prime_UTR
TCTTTGTTGTCACACTGGGT+TGG 0.484753 3_2:-83776621 Msa0431710:three_prime_UTR
AATATCACAAAAGCCGTGTC+AGG 0.485399 3_2:+83776491 None:intergenic
TGGGGATAACAATATGAAGT+TGG 0.486015 3_2:-83776357 Msa0431710:three_prime_UTR
TGATGCTTGATGACATTTCA+GGG 0.486927 3_2:-83775548 Msa0431710:three_prime_UTR
CCATGATCATGGTTCATAAG+AGG 0.487562 3_2:+83776772 None:intergenic
TCAGTATTTCTACTTTATCT+CGG 0.491918 3_2:-83777039 Msa0431710:three_prime_UTR
TCAAGATGATTTAGAAGGAA+AGG 0.492055 3_2:+83777219 None:intergenic
AATTGCGGAGAGGATGAAAC+AGG 0.492134 3_2:+83777611 None:intergenic
CTGTTACATTAAAGATGTGT+TGG 0.492623 3_2:-83774014 Msa0431710:three_prime_UTR
TACACACCCAAGTCTTGAAA+AGG 0.493665 3_2:-83773864 Msa0431710:three_prime_UTR
GGACTGTGAATACAAGAAAT+GGG 0.494131 3_2:-83773956 Msa0431710:three_prime_UTR
GTTGAAGTTGCGAGTGGCAA+AGG 0.494441 3_2:-83777692 Msa0431710:CDS
CCGGTCCACAGGGAAGAGTA+TGG 0.500922 3_2:+83774545 None:intergenic
AAGGGCCGATCTCGGAAAAC+CGG 0.502602 3_2:+83774526 None:intergenic
TGTGTATGAGTTATTACTTA+GGG 0.502710 3_2:-83774110 Msa0431710:three_prime_UTR
TGGCCTCTTTGTTGTCACAC+TGG 0.503600 3_2:-83776626 Msa0431710:three_prime_UTR
TCGCCGTGGTCGTCGAATGC+AGG 0.505488 3_2:-83775251 Msa0431710:intron
TTGTTAAATAGTGGCTATAG+AGG 0.507581 3_2:-83777014 Msa0431710:three_prime_UTR
CGAGTGGCAAAGGGTGTTCG+AGG 0.509530 3_2:-83777682 Msa0431710:CDS
AGGATGAAACAGGAGACATT+TGG 0.509792 3_2:+83777621 None:intergenic
AGTACATTGAGGATGCAGAT+TGG 0.510198 3_2:+83777261 None:intergenic
CCATACTCTTCCCTGTGGAC+CGG 0.511727 3_2:-83774545 Msa0431710:three_prime_UTR
GCAAGCAACAACCATGATCA+TGG 0.516567 3_2:+83776761 None:intergenic
ATGGAGGCTACAGAGAGATT+AGG 0.517779 3_2:-83777298 Msa0431710:CDS
GGAGCATTTGATGGCAATTG+CGG 0.518188 3_2:+83777596 None:intergenic
CTTCCCGGGTACACAAATGC+TGG 0.520659 3_2:-83776320 Msa0431710:three_prime_UTR
GTGGTGGTAAGTAACAGTTA+TGG 0.524094 3_2:-83777729 Msa0431710:exon
CATATAACAAGACCAGCAAA+AGG 0.535472 3_2:+83777575 None:intergenic
GCTGAAACTGCATCCAAAGA+AGG 0.536257 3_2:-83776005 Msa0431710:three_prime_UTR
ACAGGAGACATTTGGTCCAA+TGG 0.538148 3_2:+83777629 None:intergenic
TTGAAGTTGCGAGTGGCAAA+GGG 0.545784 3_2:-83777691 Msa0431710:CDS
ATTTCCAGCATTTGTGTACC+CGG 0.546283 3_2:+83776316 None:intergenic
TCTTGAGGAAGGGCCGATCT+CGG 0.547315 3_2:+83774518 None:intergenic
AAAGTCCATGACGATCTTCA+GGG 0.549038 3_2:-83775343 Msa0431710:three_prime_UTR
GGAGTGTGCAGAAGAAGTAA+AGG 0.549629 3_2:+83778077 None:intergenic
GTGGAATATGTCACTTGAGT+AGG 0.550378 3_2:-83773992 Msa0431710:three_prime_UTR
GTTGATTTGGCAAGACAAGT+TGG 0.550833 3_2:-83775573 Msa0431710:three_prime_UTR
GTAACAGTTATGGGTGGTGA+GGG 0.551332 3_2:-83777719 Msa0431710:exon
GTTGGTTTGTGGATAGTGTC+AGG 0.558130 3_2:-83776603 Msa0431710:three_prime_UTR
ATATACTTACATGAACCCAT+TGG 0.558502 3_2:-83777139 Msa0431710:three_prime_UTR
GTGCTAGTTTGGCAGACCAA+TGG 0.559716 3_2:-83775983 Msa0431710:three_prime_UTR
GCCACATCTATTTCAAGGCT+AGG 0.562789 3_2:+83774292 None:intergenic
GTTAGTCATGTAGTCACTGA+AGG 0.562909 3_2:-83775945 Msa0431710:three_prime_UTR
TTTGAGCATGCAGTAAAGCA+TGG 0.564693 3_2:-83776658 Msa0431710:three_prime_UTR
CACTATACAGGAACCTGACA+CGG 0.569964 3_2:-83776504 Msa0431710:three_prime_UTR
CAGATTCAAGACATGCGGAC+AGG 0.572808 3_2:-83774261 Msa0431710:three_prime_UTR
TGGAATATGTCACTTGAGTA+GGG 0.573080 3_2:-83773991 Msa0431710:three_prime_UTR
GTATCCAAGATATCTTTGAA+TGG 0.574153 3_2:+83775917 None:intergenic
GTAAGGAAACAGCGGAGCGT+GGG 0.574806 3_2:-83774219 Msa0431710:three_prime_UTR
ACCTTCTGGACTCTATCTGT+TGG 0.575317 3_2:-83774848 Msa0431710:three_prime_UTR
AGTAAGGAAACAGCGGAGCG+TGG 0.576929 3_2:-83774220 Msa0431710:three_prime_UTR
GCTTGATGACATTTCAGGGA+AGG 0.577574 3_2:-83775544 Msa0431710:intron
CAAATTGGGAAAATTAAGAG+AGG 0.577775 3_2:+83778001 None:intergenic
CAGCATGATGCTGTAGTAGG+AGG 0.577914 3_2:-83777173 Msa0431710:three_prime_UTR
TTCATCCGAATTGCAAAACA+AGG 0.577926 3_2:-83776159 Msa0431710:intron
TTACATTAAAGATGTGTTGG+TGG 0.585763 3_2:-83774011 Msa0431710:three_prime_UTR
CATTACAGCCAACAAACCAT+TGG 0.587337 3_2:+83775967 None:intergenic
AGTAACAGTTATGGGTGGTG+AGG 0.588837 3_2:-83777720 Msa0431710:exon
TACATTGAGGATGCAGATTG+GGG 0.589195 3_2:+83777263 None:intergenic
TAGAAGCACTCACTGTAATG+AGG 0.589590 3_2:+83775886 None:intergenic
TACTGCCCTGAAGATCGTCA+TGG 0.589825 3_2:+83775338 None:intergenic
AAATTAAGAGAGGGTAAAAG+GGG 0.594363 3_2:+83778011 None:intergenic
TACAAAATATTGTGAAGTAG+CGG 0.596986 3_2:-83776926 Msa0431710:three_prime_UTR
GTGGATTCTCAAAACAGCTA+AGG 0.597139 3_2:-83775628 Msa0431710:three_prime_UTR
CCTTTCTGTTAGAGGACGTG+TGG 0.598952 3_2:+83774689 None:intergenic
CTACGAAAATATCCATGCTG+TGG 0.599179 3_2:+83776729 None:intergenic
AAAAGCTTCTCTTCATCACC+AGG 0.600801 3_2:+83777811 None:intergenic
TCTCGGAAAACCGGTCCACA+GGG 0.604616 3_2:+83774535 None:intergenic
TTGGGTGTAATCGGACGGAT+CGG 0.604793 3_2:+83774873 None:intergenic
CCTCTTATGAACCATGATCA+TGG 0.608938 3_2:-83776772 Msa0431710:three_prime_UTR
ACCAACAGATAGAGTCCAGA+AGG 0.609079 3_2:+83774847 None:intergenic
CCACACGTCCTCTAACAGAA+AGG 0.609978 3_2:-83774689 Msa0431710:intron
GAAATGTTGAAGCGCGTGAG+TGG 0.613290 3_2:-83774148 Msa0431710:three_prime_UTR
ATATGTTAAAGATTTCATGA+TGG 0.613863 3_2:+83776704 None:intergenic
AGTGTATCGCAGAACAATAG+TGG 0.616508 3_2:+83776955 None:intergenic
ATCCATGCTGTGGAAACAGA+TGG 0.617621 3_2:+83776739 None:intergenic
AACCCAGTGTGACAACAAAG+AGG 0.624024 3_2:+83776623 None:intergenic
CTAAGGAGAAACAAGTGCAA+AGG 0.624728 3_2:-83775611 Msa0431710:three_prime_UTR
ACATAACTTGAAATTCAAAG+AGG 0.625524 3_2:+83777875 None:intergenic
GACTGTGAATACAAGAAATG+GGG 0.626820 3_2:-83773955 Msa0431710:three_prime_UTR
TTATAGTTTGAAGAATTATG+GGG 0.627002 3_2:-83776375 Msa0431710:three_prime_UTR
GGTTATTGGGTGTAATCGGA+CGG 0.627487 3_2:+83774868 None:intergenic
TGAGTAGGGTGCCCAAAATG+GGG 0.631792 3_2:-83773977 Msa0431710:three_prime_UTR
AATAAGATATTGATGAGCAT+AGG 0.635241 3_2:+83776812 None:intergenic
GCCTAGCCTTGAAATAGATG+TGG 0.639029 3_2:-83774293 Msa0431710:three_prime_UTR
TTAGTCATGTAGTCACTGAA+GGG 0.640621 3_2:-83775944 Msa0431710:three_prime_UTR
GAATATAGTGCAGTGGTGTG+AGG 0.641520 3_2:+83778124 None:intergenic
AGAAGCAAGGAATCAGGTCA+TGG 0.644925 3_2:-83777317 Msa0431710:CDS
GAGGCTACAGAGAGATTAGG+TGG 0.645575 3_2:-83777295 Msa0431710:CDS
TCTCACCATACTCTTCCCTG+TGG 0.646627 3_2:-83774550 Msa0431710:three_prime_UTR
ACCACCAAATGAGTACATTG+AGG 0.647498 3_2:+83777250 None:intergenic
TTTCCAGCATTTGTGTACCC+GGG 0.655427 3_2:+83776317 None:intergenic
TGACCTGCATTCGACGACCA+CGG 0.662666 3_2:+83775248 None:intergenic
AAGTAATAACTCATACACAT+TGG 0.664276 3_2:+83774114 None:intergenic
AAATTGGGAAAATTAAGAGA+GGG 0.670526 3_2:+83778002 None:intergenic
TCATACAGATTCAAGACATG+CGG 0.674214 3_2:-83774266 Msa0431710:three_prime_UTR
ATTTGATGGCAATTGCGGAG+AGG 0.674786 3_2:+83777601 None:intergenic
GCTATAGCACTGCTGCACAG+CGG 0.683726 3_2:-83776902 Msa0431710:three_prime_UTR
ATGATATTTCTCAGCCAGTG+TGG 0.684887 3_2:-83775647 Msa0431710:intron
GGTAGAGTTGAAGTTGCGAG+TGG 0.698549 3_2:-83777698 Msa0431710:CDS
AGCAAGGAATCAGGTCATGG+AGG 0.703167 3_2:-83777314 Msa0431710:CDS
ACTGTGAATACAAGAAATGG+GGG 0.709309 3_2:-83773954 Msa0431710:three_prime_UTR
AATGGTGTCAGAAGTCGCCG+TGG 0.728899 3_2:-83775265 Msa0431710:three_prime_UTR
TTACTCAAGTAAGGAAACAG+CGG 0.729643 3_2:-83774227 Msa0431710:three_prime_UTR
TGGTAAGTAACAGTTATGGG+TGG 0.758274 3_2:-83777725 Msa0431710:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTATTATTACCAAAA+TGG - chr3_2:83773744-83773763 Msa0431710:three_prime_UTR 15.0%
!! TTTATAGTTTGAAGAATTAT+GGG - chr3_2:83775558-83775577 Msa0431710:three_prime_UTR 15.0%
!!! AAACATTTAGAATAATCTTT+TGG - chr3_2:83776093-83776112 Msa0431710:intron 15.0%
!! AAAAAAAAAACAAAACAAGT+GGG + chr3_2:83776158-83776177 None:intergenic 15.0%
!! AAAAAAAAAAACAAAACAAG+TGG + chr3_2:83776159-83776178 None:intergenic 15.0%
!! TATTATAACAAATGCTAATA+AGG + chr3_2:83777527-83777546 None:intergenic 15.0%
!!! TATTAGCATTTGTTATAATA+CGG - chr3_2:83777527-83777546 Msa0431710:intron 15.0%
!!! TGAATTTTTAGGATGAAAAA+TGG + chr3_2:83773881-83773900 None:intergenic 20.0%
!!! GTGAAATTTTTGAACAAATT+GGG + chr3_2:83773950-83773969 None:intergenic 20.0%
!! GTTAATGTTATTCTTTGAAT+TGG - chr3_2:83774585-83774604 Msa0431710:three_prime_UTR 20.0%
!! AAAATTCAAGATGATTTAGA+AGG + chr3_2:83774723-83774742 None:intergenic 20.0%
!!! AATTGTTTGCTTAACTTTTT+TGG - chr3_2:83774842-83774861 Msa0431710:three_prime_UTR 20.0%
!! TAAAGTAGAAATACTGATAT+GGG + chr3_2:83774892-83774911 None:intergenic 20.0%
!! ATAAAGTAGAAATACTGATA+TGG + chr3_2:83774893-83774912 None:intergenic 20.0%
!! ATATGTTAAAGATTTCATGA+TGG + chr3_2:83775233-83775252 None:intergenic 20.0%
!! CTTTATAGTTTGAAGAATTA+TGG - chr3_2:83775557-83775576 Msa0431710:three_prime_UTR 20.0%
!! TTATAGTTTGAAGAATTATG+GGG - chr3_2:83775559-83775578 Msa0431710:three_prime_UTR 20.0%
!!! AATATCTAGACATTTTGTAA+TGG - chr3_2:83775821-83775840 Msa0431710:intron 20.0%
!! ATTAATATTATGCGATAAGT+AGG - chr3_2:83776221-83776240 Msa0431710:three_prime_UTR 20.0%
!! TGATATAAATAATACGGTAT+AGG + chr3_2:83776247-83776266 None:intergenic 20.0%
!! CCATTGTGATATAAATAATA+CGG + chr3_2:83776253-83776272 None:intergenic 20.0%
!! CGAAATTAAATATTCCAATA+TGG + chr3_2:83776924-83776943 None:intergenic 20.0%
!!! TTTTGCATCAAAAAATATTG+AGG + chr3_2:83777188-83777207 None:intergenic 20.0%
!!! TCAATATTTTTTGATGCAAA+AGG - chr3_2:83777187-83777206 Msa0431710:three_prime_UTR 20.0%
!!! CAATATTTTTTGATGCAAAA+GGG - chr3_2:83777188-83777207 Msa0431710:three_prime_UTR 20.0%
!!! AATATTTTTTGATGCAAAAG+GGG - chr3_2:83777189-83777208 Msa0431710:three_prime_UTR 20.0%
!!! TATGGCTTAATATTTCATTT+TGG - chr3_2:83777318-83777337 Msa0431710:CDS 20.0%
!!! ATGGTTTTTAAATATCAACT+CGG + chr3_2:83777362-83777381 None:intergenic 20.0%
!!! TTGAAACGAATTGAATTTTT+GGG - chr3_2:83777747-83777766 Msa0431710:five_prime_UTR 20.0%
!!! TTTTTTTGAATATAGTGCAG+TGG + chr3_2:83773820-83773839 None:intergenic 25.0%
! AGTAAAGGACAATAAGAAAA+GGG + chr3_2:83773845-83773864 None:intergenic 25.0%
! AAGTAAAGGACAATAAGAAA+AGG + chr3_2:83773846-83773865 None:intergenic 25.0%
!! GAGACAAAGAATGAATTTTT+AGG + chr3_2:83773892-83773911 None:intergenic 25.0%
! AAAATTAAGAGAGGGTAAAA+GGG + chr3_2:83773927-83773946 None:intergenic 25.0%
! AAATTGGGAAAATTAAGAGA+GGG + chr3_2:83773935-83773954 None:intergenic 25.0%
!! GGTGAAATTTTTGAACAAAT+TGG + chr3_2:83773951-83773970 None:intergenic 25.0%
!! ATTTCACCTTTTTCCAAATA+CGG - chr3_2:83773963-83773982 Msa0431710:three_prime_UTR 25.0%
!!! AATTGTTTTTTTGGTCAATG+AGG - chr3_2:83774026-83774045 Msa0431710:three_prime_UTR 25.0%
! ACATAACTTGAAATTCAAAG+AGG + chr3_2:83774062-83774081 None:intergenic 25.0%
!! TATATAGATTTTCAATTGCC+TGG - chr3_2:83774105-83774124 Msa0431710:three_prime_UTR 25.0%
!!! TAACAGAACTTTTTTCCAAT+GGG + chr3_2:83774813-83774832 None:intergenic 25.0%
!!! TTAACAGAACTTTTTTCCAA+TGG + chr3_2:83774814-83774833 None:intergenic 25.0%
!! AAGTTAAGCAAACAATTTTC+AGG + chr3_2:83774839-83774858 None:intergenic 25.0%
!! TCAGTATTTCTACTTTATCT+CGG - chr3_2:83774895-83774914 Msa0431710:intron 25.0%
! TACAAAATATTGTGAAGTAG+CGG - chr3_2:83775008-83775027 Msa0431710:intron 25.0%
! AATAAGATATTGATGAGCAT+AGG + chr3_2:83775125-83775144 None:intergenic 25.0%
!! TTTAACATATAGCACAGTTT+TGG - chr3_2:83775243-83775262 Msa0431710:intron 25.0%
! CTTCAAACTATAAAGTGATT+CGG + chr3_2:83775552-83775571 None:intergenic 25.0%
!!! ATTTACCTTGTTTTGCAATT+CGG + chr3_2:83775783-83775802 None:intergenic 25.0%
! TTTAGATGCTTTACATGTAT+AGG - chr3_2:83775904-83775923 Msa0431710:three_prime_UTR 25.0%
!!! CATTTAGAATAATCTTTTGG+AGG - chr3_2:83776096-83776115 Msa0431710:intron 25.0%
! CCGTATTATTTATATCACAA+TGG - chr3_2:83776250-83776269 Msa0431710:three_prime_UTR 25.0%
! GTATTTACAATTCCAAGAAA+AGG + chr3_2:83776446-83776465 None:intergenic 25.0%
! AAAATTAGCGAGTTTAATCT+TGG + chr3_2:83776468-83776487 None:intergenic 25.0%
! TCACAATTTCAAGAAAATGA+GGG + chr3_2:83776533-83776552 None:intergenic 25.0%
! ATCACAATTTCAAGAAAATG+AGG + chr3_2:83776534-83776553 None:intergenic 25.0%
! ATTGTAAATTCAGCGAAAAA+TGG - chr3_2:83776651-83776670 Msa0431710:three_prime_UTR 25.0%
!!! AACATTTTGGTCTATAAAAC+TGG - chr3_2:83776894-83776913 Msa0431710:three_prime_UTR 25.0%
! ATAAAACTGGATTTCCATAT+TGG - chr3_2:83776907-83776926 Msa0431710:three_prime_UTR 25.0%
! AAAGATAACAAACTAAAGAC+AGG + chr3_2:83776961-83776980 None:intergenic 25.0%
! AAGTACTAAAAGTTGAAGAT+AGG - chr3_2:83776989-83777008 Msa0431710:three_prime_UTR 25.0%
!! ATTGAGGTATGATTTTCATT+AGG + chr3_2:83777172-83777191 None:intergenic 25.0%
! TTAAGCCATATTTACTACAT+CGG + chr3_2:83777308-83777327 None:intergenic 25.0%
!! GTTGAAACGAATTGAATTTT+TGG - chr3_2:83777746-83777765 Msa0431710:five_prime_UTR 25.0%
! AAGTAATAACTCATACACAT+TGG + chr3_2:83777823-83777842 None:intergenic 25.0%
! ATGTGTATGAGTTATTACTT+AGG - chr3_2:83777823-83777842 Msa0431710:five_prime_UTR 25.0%
! TGTGTATGAGTTATTACTTA+GGG - chr3_2:83777824-83777843 Msa0431710:five_prime_UTR 25.0%
!!! TTAAATCCTTTTCAAGACTT+GGG + chr3_2:83778079-83778098 None:intergenic 25.0%
!!! ATTAAATCCTTTTCAAGACT+TGG + chr3_2:83778080-83778099 None:intergenic 25.0%
!!! CTTTTGGTTTTTCATTGTTA+CGG - chr3_2:83778183-83778202 Msa0431710:five_prime_UTR 25.0%
! TTTTGTGTGTGATTCCATTT+TGG + chr3_2:83773761-83773780 None:intergenic 30.0%
AAATTAAGAGAGGGTAAAAG+GGG + chr3_2:83773926-83773945 None:intergenic 30.0%
GAAAATTAAGAGAGGGTAAA+AGG + chr3_2:83773928-83773947 None:intergenic 30.0%
CAAATTGGGAAAATTAAGAG+AGG + chr3_2:83773936-83773955 None:intergenic 30.0%
AACAAACCGTATTTGGAAAA+AGG + chr3_2:83773972-83773991 None:intergenic 30.0%
TCATGTCTTCTATGATTGAT+TGG - chr3_2:83774410-83774429 Msa0431710:intron 30.0%
CAATGACTTCAAGTAAGATA+AGG + chr3_2:83774451-83774470 None:intergenic 30.0%
CTTATCTTACTTGAAGTCAT+TGG - chr3_2:83774449-83774468 Msa0431710:intron 30.0%
TCATATACTTGAGCTTGAAA+AGG - chr3_2:83774505-83774524 Msa0431710:three_prime_UTR 30.0%
! TATTCTTTGAATTGGCGTTT+TGG - chr3_2:83774593-83774612 Msa0431710:intron 30.0%
TCAAGATGATTTAGAAGGAA+AGG + chr3_2:83774718-83774737 None:intergenic 30.0%
ATATACTTACATGAACCCAT+TGG - chr3_2:83774795-83774814 Msa0431710:three_prime_UTR 30.0%
! TTGTGTGAGAGAAGTAATTT+TGG - chr3_2:83774865-83774884 Msa0431710:three_prime_UTR 30.0%
ATCTCGGTATTGTTAAATAG+TGG - chr3_2:83774911-83774930 Msa0431710:intron 30.0%
TTGTTAAATAGTGGCTATAG+AGG - chr3_2:83774920-83774939 Msa0431710:intron 30.0%
TTGTGAATTGCAGAAAATAG+AGG + chr3_2:83775070-83775089 None:intergenic 30.0%
CAATTCACAATTGACAAAAC+TGG - chr3_2:83775080-83775099 Msa0431710:intron 30.0%
GTAAAGCATGGAACAAAAAA+TGG - chr3_2:83775288-83775307 Msa0431710:three_prime_UTR 30.0%
! TCATTTTGTCTACTACAGTA+AGG - chr3_2:83775522-83775541 Msa0431710:intron 30.0%
ACATCCATTCAAAGATATCT+TGG - chr3_2:83776013-83776032 Msa0431710:intron 30.0%
GTATCCAAGATATCTTTGAA+TGG + chr3_2:83776020-83776039 None:intergenic 30.0%
AAAAAAACAAAACAAGTGGG+AGG + chr3_2:83776155-83776174 None:intergenic 30.0%
TTACAATTCCAAGAAAAGGA+GGG + chr3_2:83776442-83776461 None:intergenic 30.0%
TTTACAATTCCAAGAAAAGG+AGG + chr3_2:83776443-83776462 None:intergenic 30.0%
TTCAACAAACCACTCAAATT+TGG - chr3_2:83776486-83776505 Msa0431710:three_prime_UTR 30.0%
! TTTTGCAAACCAAATTTGAG+TGG + chr3_2:83776498-83776517 None:intergenic 30.0%
CTGAATTTCATTGACATAAC+AGG - chr3_2:83776554-83776573 Msa0431710:three_prime_UTR 30.0%
AGCAAAATCAACAAACTTAG+AGG + chr3_2:83776803-83776822 None:intergenic 30.0%
AACTCAAATCACATGTATAG+TGG + chr3_2:83776829-83776848 None:intergenic 30.0%
ACTATACATGTGATTTGAGT+TGG - chr3_2:83776828-83776847 Msa0431710:three_prime_UTR 30.0%
!! TGTGATTTGAGTTGGTAATT+TGG - chr3_2:83776836-83776855 Msa0431710:three_prime_UTR 30.0%
! GTTCCTCATTCTTAACATTT+TGG - chr3_2:83776881-83776900 Msa0431710:three_prime_UTR 30.0%
AGACCAAAATGTTAAGAATG+AGG + chr3_2:83776887-83776906 None:intergenic 30.0%
! GGAATATTTAATTTCGAGCA+CGG - chr3_2:83776928-83776947 Msa0431710:three_prime_UTR 30.0%
! TTTTCCCGATGTAGTAAATA+TGG - chr3_2:83777300-83777319 Msa0431710:CDS 30.0%
TAAGCCATATTTACTACATC+GGG + chr3_2:83777307-83777326 None:intergenic 30.0%
TCATATCCATGCATATTATC+AGG - chr3_2:83777483-83777502 Msa0431710:intron 30.0%
! CTTTTACCTGATAATATGCA+TGG + chr3_2:83777492-83777511 None:intergenic 30.0%
CATGCATATTATCAGGTAAA+AGG - chr3_2:83777490-83777509 Msa0431710:intron 30.0%
CTGTTACATTAAAGATGTGT+TGG - chr3_2:83777920-83777939 Msa0431710:five_prime_UTR 30.0%
TTACATTAAAGATGTGTTGG+TGG - chr3_2:83777923-83777942 Msa0431710:five_prime_UTR 30.0%
!! AGATAACCTTTTGAAGACTT+GGG + chr3_2:83778037-83778056 None:intergenic 30.0%
!! TAGATAACCTTTTGAAGACT+TGG + chr3_2:83778038-83778057 None:intergenic 30.0%
TGAAAAACCAAAAGTTCAAG+TGG + chr3_2:83778177-83778196 None:intergenic 30.0%
GGTAAAAGGGGTTATAGAAT+TGG + chr3_2:83773914-83773933 None:intergenic 35.0%
TATGCAGAACAAACCGTATT+TGG + chr3_2:83773979-83773998 None:intergenic 35.0%
!! TGTGTTGTTCACTGTTTTAG+TGG - chr3_2:83774186-83774205 Msa0431710:three_prime_UTR 35.0%
TGGTGGTAAGTAACAGTTAT+GGG - chr3_2:83774206-83774225 Msa0431710:three_prime_UTR 35.0%
AATCAGATCTCTTCAACCAT+TGG - chr3_2:83774289-83774308 Msa0431710:three_prime_UTR 35.0%
CATATAACAAGACCAGCAAA+AGG + chr3_2:83774362-83774381 None:intergenic 35.0%
!! GGTCTTGTTATATGTGTTAC+CGG - chr3_2:83774368-83774387 Msa0431710:intron 35.0%
!! TGTGTTACCGGTTTATCTAA+AGG - chr3_2:83774380-83774399 Msa0431710:intron 35.0%
ATCCACACCTTTAGATAAAC+CGG + chr3_2:83774390-83774409 None:intergenic 35.0%
!! AACATATAGCACAGTTTTGG+CGG - chr3_2:83775246-83775265 Msa0431710:intron 35.0%
TGGGGATAACAATATGAAGT+TGG - chr3_2:83775577-83775596 Msa0431710:three_prime_UTR 35.0%
TTGATTTCATGGATTCTTGC+AGG + chr3_2:83775650-83775669 None:intergenic 35.0%
GATGAGTATGCTTGATTTCA+TGG + chr3_2:83775661-83775680 None:intergenic 35.0%
GAAGAATTTCGAAGATTCTC+TGG - chr3_2:83775686-83775705 Msa0431710:intron 35.0%
TTCATCCGAATTGCAAAACA+AGG - chr3_2:83775775-83775794 Msa0431710:intron 35.0%
TTAGTCATGTAGTCACTGAA+GGG - chr3_2:83775990-83776009 Msa0431710:three_prime_UTR 35.0%
! TGTTAGCATGTCTGTTGATT+TGG - chr3_2:83776348-83776367 Msa0431710:three_prime_UTR 35.0%
! TGATGCTTGATGACATTTCA+GGG - chr3_2:83776386-83776405 Msa0431710:three_prime_UTR 35.0%
! TTTTGTCTTTTCAGTGGAGT+TGG - chr3_2:83776731-83776750 Msa0431710:three_prime_UTR 35.0%
!! CTCTAAGACACACAATTACA+TGG + chr3_2:83776767-83776786 None:intergenic 35.0%
CATGTAATTGTGTGTCTTAG+AGG - chr3_2:83776765-83776784 Msa0431710:three_prime_UTR 35.0%
GATAACAAACTAAAGACAGG+TGG + chr3_2:83776958-83776977 None:intergenic 35.0%
AGAAGGTTATTGGGTGTAAT+CGG + chr3_2:83777073-83777092 None:intergenic 35.0%
ATAGAGTCCAGAAGGTTATT+GGG + chr3_2:83777082-83777101 None:intergenic 35.0%
CTCTATCTGTTGGTCAATAT+CGG - chr3_2:83777096-83777115 Msa0431710:three_prime_UTR 35.0%
ACTGAAAGAGTCTGTGTAAA+TGG + chr3_2:83777140-83777159 None:intergenic 35.0%
GAAAGGTTGTTCTCAATTTG+TGG - chr3_2:83777262-83777281 Msa0431710:CDS 35.0%
TGAAAAACGTTCTTGAGGAA+GGG + chr3_2:83777429-83777448 None:intergenic 35.0%
!! AGAACGTTTTTCAGCCATAA+CGG - chr3_2:83777436-83777455 Msa0431710:intron 35.0%
GAAGACATGTAAAACCGTTA+TGG + chr3_2:83777453-83777472 None:intergenic 35.0%
! TAACGGTTTTACATGTCTTC+AGG - chr3_2:83777453-83777472 Msa0431710:intron 35.0%
! TTTTACATGTCTTCAGGTGT+TGG - chr3_2:83777459-83777478 Msa0431710:intron 35.0%
TCATACAGATTCAAGACATG+CGG - chr3_2:83777668-83777687 Msa0431710:CDS 35.0%
TCGATCAGTTTACTCAAGTA+AGG - chr3_2:83777698-83777717 Msa0431710:CDS 35.0%
TTACTCAAGTAAGGAAACAG+CGG - chr3_2:83777707-83777726 Msa0431710:CDS 35.0%
GAGTTATTACTTAGGGCATA+AGG - chr3_2:83777831-83777850 Msa0431710:five_prime_UTR 35.0%
! TGGAATATGTCACTTGAGTA+GGG - chr3_2:83777943-83777962 Msa0431710:five_prime_UTR 35.0%
GGACTGTGAATACAAGAAAT+GGG - chr3_2:83777978-83777997 Msa0431710:five_prime_UTR 35.0%
GACTGTGAATACAAGAAATG+GGG - chr3_2:83777979-83777998 Msa0431710:five_prime_UTR 35.0%
ACTGTGAATACAAGAAATGG+GGG - chr3_2:83777980-83777999 Msa0431710:five_prime_UTR 35.0%
!! GATAACCTTTTGAAGACTTG+GGG + chr3_2:83778036-83778055 None:intergenic 35.0%
! TTACGAACCACTTGAACTTT+TGG - chr3_2:83778167-83778186 Msa0431710:five_prime_UTR 35.0%
AAAAGCTTCTCTTCATCACC+AGG + chr3_2:83774126-83774145 None:intergenic 40.0%
!!! GTTGTTCACTGTTTTAGTGG+TGG - chr3_2:83774189-83774208 Msa0431710:three_prime_UTR 40.0%
GTGGTGGTAAGTAACAGTTA+TGG - chr3_2:83774205-83774224 Msa0431710:three_prime_UTR 40.0%
TGGTAAGTAACAGTTATGGG+TGG - chr3_2:83774209-83774228 Msa0431710:three_prime_UTR 40.0%
AGGATGAAACAGGAGACATT+TGG + chr3_2:83774316-83774335 None:intergenic 40.0%
!! TACCGGTTTATCTAAAGGTG+TGG - chr3_2:83774385-83774404 Msa0431710:intron 40.0%
TACATTGAGGATGCAGATTG+GGG + chr3_2:83774674-83774693 None:intergenic 40.0%
GTACATTGAGGATGCAGATT+GGG + chr3_2:83774675-83774694 None:intergenic 40.0%
AGTACATTGAGGATGCAGAT+TGG + chr3_2:83774676-83774695 None:intergenic 40.0%
GCATCCTCAATGTACTCATT+TGG - chr3_2:83774680-83774699 Msa0431710:intron 40.0%
TCCTCAATGTACTCATTTGG+TGG - chr3_2:83774683-83774702 Msa0431710:intron 40.0%
ACCACCAAATGAGTACATTG+AGG + chr3_2:83774687-83774706 None:intergenic 40.0%
AGTGTATCGCAGAACAATAG+TGG + chr3_2:83774982-83775001 None:intergenic 40.0%
CCATGATCATGGTTCATAAG+AGG + chr3_2:83775165-83775184 None:intergenic 40.0%
CCTCTTATGAACCATGATCA+TGG - chr3_2:83775162-83775181 Msa0431710:intron 40.0%
CTACGAAAATATCCATGCTG+TGG + chr3_2:83775208-83775227 None:intergenic 40.0%
TTTGAGCATGCAGTAAAGCA+TGG - chr3_2:83775276-83775295 Msa0431710:three_prime_UTR 40.0%
GTGGATAGTGTCAGGAAAAA+TGG - chr3_2:83775339-83775358 Msa0431710:three_prime_UTR 40.0%
CTTGAAGTCATGCACTATAC+AGG - chr3_2:83775418-83775437 Msa0431710:intron 40.0%
AATATCACAAAAGCCGTGTC+AGG + chr3_2:83775446-83775465 None:intergenic 40.0%
! GATGATTTTAGACTGCTTCC+CGG - chr3_2:83775599-83775618 Msa0431710:three_prime_UTR 40.0%
! ATGATTTTAGACTGCTTCCC+GGG - chr3_2:83775600-83775619 Msa0431710:three_prime_UTR 40.0%
ATTTCCAGCATTTGTGTACC+CGG + chr3_2:83775621-83775640 None:intergenic 40.0%
TGCAGAGTCTAACAGAAGTT+TGG - chr3_2:83775709-83775728 Msa0431710:intron 40.0%
AGTTTGGACTCAAGTTTGTC+TGG - chr3_2:83775725-83775744 Msa0431710:intron 40.0%
CAGTTTCCTCTGTTTCAGTT+AGG - chr3_2:83775847-83775866 Msa0431710:intron 40.0%
!! ATCCAAAGAAGGTGCTAGTT+TGG - chr3_2:83775940-83775959 Msa0431710:three_prime_UTR 40.0%
CATTACAGCCAACAAACCAT+TGG + chr3_2:83775970-83775989 None:intergenic 40.0%
GTTAGTCATGTAGTCACTGA+AGG - chr3_2:83775989-83776008 Msa0431710:three_prime_UTR 40.0%
!! TAGAAGCACTCACTGTAATG+AGG + chr3_2:83776051-83776070 None:intergenic 40.0%
TGTCTTCCAGAAGATGTACA+GGG + chr3_2:83776191-83776210 None:intergenic 40.0%
ATGTCTTCCAGAAGATGTAC+AGG + chr3_2:83776192-83776211 None:intergenic 40.0%
ATGATATTTCTCAGCCAGTG+TGG - chr3_2:83776287-83776306 Msa0431710:three_prime_UTR 40.0%
GTGGATTCTCAAAACAGCTA+AGG - chr3_2:83776306-83776325 Msa0431710:three_prime_UTR 40.0%
CTAAGGAGAAACAAGTGCAA+AGG - chr3_2:83776323-83776342 Msa0431710:three_prime_UTR 40.0%
!! GTTGATTTGGCAAGACAAGT+TGG - chr3_2:83776361-83776380 Msa0431710:three_prime_UTR 40.0%
CTGAAATGTCATCAAGCATC+AGG + chr3_2:83776387-83776406 None:intergenic 40.0%
! CTGATGCTTGATGACATTTC+AGG - chr3_2:83776385-83776404 Msa0431710:three_prime_UTR 40.0%
CAAGAAAAGGAGGGAAATCT+AGG + chr3_2:83776433-83776452 None:intergenic 40.0%
! CTAGATTTCCCTCCTTTTCT+TGG - chr3_2:83776431-83776450 Msa0431710:three_prime_UTR 40.0%
CAAGAAAATGAGGGAAGTCT+AGG + chr3_2:83776524-83776543 None:intergenic 40.0%
AAAAGTCCATGACGATCTTC+AGG - chr3_2:83776590-83776609 Msa0431710:three_prime_UTR 40.0%
AAAGTCCATGACGATCTTCA+GGG - chr3_2:83776591-83776610 Msa0431710:three_prime_UTR 40.0%
CAGGGCAGTAAAAGTGAAAT+TGG - chr3_2:83776609-83776628 Msa0431710:three_prime_UTR 40.0%
CACTGAAAAGACAAAAGTGG+AGG + chr3_2:83776727-83776746 None:intergenic 40.0%
!! CTCCACTTTTGTCTTTTCAG+TGG - chr3_2:83776725-83776744 Msa0431710:three_prime_UTR 40.0%
CTCCACTGAAAAGACAAAAG+TGG + chr3_2:83776730-83776749 None:intergenic 40.0%
GATTACACCCAATAACCTTC+TGG - chr3_2:83777072-83777091 Msa0431710:three_prime_UTR 40.0%
GATAGAGTCCAGAAGGTTAT+TGG + chr3_2:83777083-83777102 None:intergenic 40.0%
GAGAACAACCTTTCTGTTAG+AGG + chr3_2:83777256-83777275 None:intergenic 40.0%
TTCTCAATTTGTGGCCTGAT+GGG - chr3_2:83777271-83777290 Msa0431710:CDS 40.0%
CGGGAAAAAATATACCCATC+AGG + chr3_2:83777288-83777307 None:intergenic 40.0%
! GGAAGAGTATGGTGAGAAAA+TGG + chr3_2:83777381-83777400 None:intergenic 40.0%
CTGAAAAACGTTCTTGAGGA+AGG + chr3_2:83777430-83777449 None:intergenic 40.0%
ATGGCTGAAAAACGTTCTTG+AGG + chr3_2:83777434-83777453 None:intergenic 40.0%
TCAGGTAAAAGGAAACTTGC+AGG - chr3_2:83777501-83777520 Msa0431710:intron 40.0%
TGTCGTCACTAATGAGACAA+TGG - chr3_2:83777589-83777608 Msa0431710:CDS 40.0%
CACTAATGAGACAATGGATG+TGG - chr3_2:83777595-83777614 Msa0431710:CDS 40.0%
! GATGTGGCGATTTTTGTGAT+AGG - chr3_2:83777611-83777630 Msa0431710:CDS 40.0%
GAATCGCCACATCTATTTCA+AGG + chr3_2:83777650-83777669 None:intergenic 40.0%
! GTGGAATATGTCACTTGAGT+AGG - chr3_2:83777942-83777961 Msa0431710:five_prime_UTR 40.0%
! GTATTCACAGTCCCCATTTT+GGG + chr3_2:83777971-83777990 None:intergenic 40.0%
! TGTATTCACAGTCCCCATTT+TGG + chr3_2:83777972-83777991 None:intergenic 40.0%
GGGACTGTGAATACAAGAAA+TGG - chr3_2:83777977-83777996 Msa0431710:five_prime_UTR 40.0%
GAATACAAGAAATGGGGGAT+TGG - chr3_2:83777985-83778004 Msa0431710:five_prime_UTR 40.0%
!! AAATGGGGGATTGGCTTATA+TGG - chr3_2:83777994-83778013 Msa0431710:five_prime_UTR 40.0%
TTACACCCCAAGTCTTCAAA+AGG - chr3_2:83778028-83778047 Msa0431710:five_prime_UTR 40.0%
TACACACCCAAGTCTTGAAA+AGG - chr3_2:83778070-83778089 Msa0431710:five_prime_UTR 40.0%
GAATATAGTGCAGTGGTGTG+AGG + chr3_2:83773813-83773832 None:intergenic 45.0%
GGAGTGTGCAGAAGAAGTAA+AGG + chr3_2:83773860-83773879 None:intergenic 45.0%
AGTAACAGTTATGGGTGGTG+AGG - chr3_2:83774214-83774233 Msa0431710:three_prime_UTR 45.0%
GTAACAGTTATGGGTGGTGA+GGG - chr3_2:83774215-83774234 Msa0431710:three_prime_UTR 45.0%
TTGAAGTTGCGAGTGGCAAA+GGG - chr3_2:83774243-83774262 Msa0431710:three_prime_UTR 45.0%
ACAGGAGACATTTGGTCCAA+TGG + chr3_2:83774308-83774327 None:intergenic 45.0%
AATTGCGGAGAGGATGAAAC+AGG + chr3_2:83774326-83774345 None:intergenic 45.0%
! ATTTGATGGCAATTGCGGAG+AGG + chr3_2:83774336-83774355 None:intergenic 45.0%
! GGAGCATTTGATGGCAATTG+CGG + chr3_2:83774341-83774360 None:intergenic 45.0%
!! CCAGCAAAAGGAGCATTTGA+TGG + chr3_2:83774350-83774369 None:intergenic 45.0%
! CCATCAAATGCTCCTTTTGC+TGG - chr3_2:83774347-83774366 Msa0431710:intron 45.0%
TTTGGCAGAAGCAAGGAATC+AGG - chr3_2:83774611-83774630 Msa0431710:intron 45.0%
AGAAGCAAGGAATCAGGTCA+TGG - chr3_2:83774617-83774636 Msa0431710:intron 45.0%
ATGGAGGCTACAGAGAGATT+AGG - chr3_2:83774636-83774655 Msa0431710:intron 45.0%
CATCAGCATGATGCTGTAGT+AGG - chr3_2:83774758-83774777 Msa0431710:three_prime_UTR 45.0%
GCAAGCAACAACCATGATCA+TGG + chr3_2:83775176-83775195 None:intergenic 45.0%
ATCCATGCTGTGGAAACAGA+TGG + chr3_2:83775198-83775217 None:intergenic 45.0%
AACCCAGTGTGACAACAAAG+AGG + chr3_2:83775314-83775333 None:intergenic 45.0%
! TCTTTGTTGTCACACTGGGT+TGG - chr3_2:83775313-83775332 Msa0431710:three_prime_UTR 45.0%
!! GTTGGTTTGTGGATAGTGTC+AGG - chr3_2:83775331-83775350 Msa0431710:three_prime_UTR 45.0%
CACTATACAGGAACCTGACA+CGG - chr3_2:83775430-83775449 Msa0431710:intron 45.0%
TTTCCAGCATTTGTGTACCC+GGG + chr3_2:83775620-83775639 None:intergenic 45.0%
AATGCCTGGATCAACGTAGA+TGG + chr3_2:83775756-83775775 None:intergenic 45.0%
TGCAATTCGGATGAAATGCC+TGG + chr3_2:83775770-83775789 None:intergenic 45.0%
! GCGTATGACTGAAGTGTTCT+CGG - chr3_2:83775873-83775892 Msa0431710:intron 45.0%
GCTGAAACTGCATCCAAAGA+AGG - chr3_2:83775929-83775948 Msa0431710:three_prime_UTR 45.0%
TGCCAAACTAGCACCTTCTT+TGG + chr3_2:83775945-83775964 None:intergenic 45.0%
! TTGGCAGACCAATGGTTTGT+TGG - chr3_2:83775959-83775978 Msa0431710:three_prime_UTR 45.0%
!!! GCTGTTTTGAGAATCCACAC+TGG + chr3_2:83776304-83776323 None:intergenic 45.0%
! GCTTGATGACATTTCAGGGA+AGG - chr3_2:83776390-83776409 Msa0431710:three_prime_UTR 45.0%
GGTTATTGGGTGTAATCGGA+CGG + chr3_2:83777069-83777088 None:intergenic 45.0%
ACCTTCTGGACTCTATCTGT+TGG - chr3_2:83777086-83777105 Msa0431710:three_prime_UTR 45.0%
ACCAACAGATAGAGTCCAGA+AGG + chr3_2:83777090-83777109 None:intergenic 45.0%
TGATGCAAAAGGGGATGAGA+AGG - chr3_2:83777198-83777217 Msa0431710:three_prime_UTR 45.0%
GTTCTCAATTTGTGGCCTGA+TGG - chr3_2:83777270-83777289 Msa0431710:CDS 45.0%
!! GCCTAGCCTTGAAATAGATG+TGG - chr3_2:83777641-83777660 Msa0431710:CDS 45.0%
GCCACATCTATTTCAAGGCT+AGG + chr3_2:83777645-83777664 None:intergenic 45.0%
! TTGAGTAGGGTGCCCAAAAT+GGG - chr3_2:83777956-83777975 Msa0431710:five_prime_UTR 45.0%
!!! AATATTAAAAATTGTTTTTT+TGG - chr3_2:83774017-83774036 Msa0431710:three_prime_UTR 5.0%
!!! TTTGTTTTTTTTTTTTTTAA+CGG - chr3_2:83776164-83776183 Msa0431710:three_prime_UTR 5.0%
GGTAGAGTTGAAGTTGCGAG+TGG - chr3_2:83774236-83774255 Msa0431710:three_prime_UTR 50.0%
GTTGAAGTTGCGAGTGGCAA+AGG - chr3_2:83774242-83774261 Msa0431710:three_prime_UTR 50.0%
!! TTGGCGTTTTGGCAGAAGCA+AGG - chr3_2:83774604-83774623 Msa0431710:intron 50.0%
AGCAAGGAATCAGGTCATGG+AGG - chr3_2:83774620-83774639 Msa0431710:intron 50.0%
GAGGCTACAGAGAGATTAGG+TGG - chr3_2:83774639-83774658 Msa0431710:intron 50.0%
GATGCAGATTGGGGCTATAC+TGG + chr3_2:83774665-83774684 None:intergenic 50.0%
CAGCATGATGCTGTAGTAGG+AGG - chr3_2:83774761-83774780 Msa0431710:three_prime_UTR 50.0%
TGCCATCTGTTTCCACAGCA+TGG - chr3_2:83775193-83775212 Msa0431710:intron 50.0%
! TGGCCTCTTTGTTGTCACAC+TGG - chr3_2:83775308-83775327 Msa0431710:three_prime_UTR 50.0%
! GGCCTCTTTGTTGTCACACT+GGG - chr3_2:83775309-83775328 Msa0431710:three_prime_UTR 50.0%
!! TGTCACACTGGGTTGGTTTG+TGG - chr3_2:83775320-83775339 Msa0431710:three_prime_UTR 50.0%
TGCTCCATCTACGTTGATCC+AGG - chr3_2:83775749-83775768 Msa0431710:intron 50.0%
! CGCTAGCCTAACTGAAACAG+AGG + chr3_2:83775856-83775875 None:intergenic 50.0%
! GTGCTAGTTTGGCAGACCAA+TGG - chr3_2:83775951-83775970 Msa0431710:three_prime_UTR 50.0%
AACGGTCCCTGTACATCTTC+TGG - chr3_2:83776182-83776201 Msa0431710:three_prime_UTR 50.0%
TACTGCCCTGAAGATCGTCA+TGG + chr3_2:83776599-83776618 None:intergenic 50.0%
TTGGGTGTAATCGGACGGAT+CGG + chr3_2:83777064-83777083 None:intergenic 50.0%
CCTTTCTGTTAGAGGACGTG+TGG + chr3_2:83777248-83777267 None:intergenic 50.0%
CCACACGTCCTCTAACAGAA+AGG - chr3_2:83777245-83777264 Msa0431710:CDS 50.0%
TCTCACCATACTCTTCCCTG+TGG - chr3_2:83777384-83777403 Msa0431710:intron 50.0%
CAGATTCAAGACATGCGGAC+AGG - chr3_2:83777673-83777692 Msa0431710:CDS 50.0%
GAAATGTTGAAGCGCGTGAG+TGG - chr3_2:83777786-83777805 Msa0431710:five_prime_UTR 50.0%
! CTTGAGTAGGGTGCCCAAAA+TGG - chr3_2:83777955-83777974 Msa0431710:five_prime_UTR 50.0%
! TGAGTAGGGTGCCCAAAATG+GGG - chr3_2:83777957-83777976 Msa0431710:five_prime_UTR 50.0%
GCTATAGCACTGCTGCACAG+CGG - chr3_2:83775032-83775051 Msa0431710:intron 55.0%
CTTCCCGGGTACACAAATGC+TGG - chr3_2:83775614-83775633 Msa0431710:three_prime_UTR 55.0%
! AATGGTGTCAGAAGTCGCCG+TGG - chr3_2:83776669-83776688 Msa0431710:three_prime_UTR 55.0%
TGACCTGCATTCGACGACCA+CGG + chr3_2:83776689-83776708 None:intergenic 55.0%
CCATACTCTTCCCTGTGGAC+CGG - chr3_2:83777389-83777408 Msa0431710:intron 55.0%
TCTCGGAAAACCGGTCCACA+GGG + chr3_2:83777402-83777421 None:intergenic 55.0%
ATCTCGGAAAACCGGTCCAC+AGG + chr3_2:83777403-83777422 None:intergenic 55.0%
!! GTGGACCGGTTTTCCGAGAT+CGG - chr3_2:83777403-83777422 Msa0431710:intron 55.0%
AAGGGCCGATCTCGGAAAAC+CGG + chr3_2:83777411-83777430 None:intergenic 55.0%
TCTTGAGGAAGGGCCGATCT+CGG + chr3_2:83777419-83777438 None:intergenic 55.0%
AGTAAGGAAACAGCGGAGCG+TGG - chr3_2:83777714-83777733 Msa0431710:exon 55.0%
GTAAGGAAACAGCGGAGCGT+GGG - chr3_2:83777715-83777734 Msa0431710:exon 55.0%
!! CGAGTGGCAAAGGGTGTTCG+AGG - chr3_2:83774252-83774271 Msa0431710:three_prime_UTR 60.0%
CCGGTCCACAGGGAAGAGTA+TGG + chr3_2:83777392-83777411 None:intergenic 60.0%
TCGCCGTGGTCGTCGAATGC+AGG - chr3_2:83776683-83776702 Msa0431710:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 83773733 83778223 83773733 ID=Msa0431710;Name=Msa0431710
chr3_2 mRNA 83773733 83778223 83773733 ID=Msa0431710-mRNA-1;Parent=Msa0431710;Name=Msa0431710-mRNA-1;_AED=0.04;_eAED=0.04;_QI=491|1|1|1|1|0.87|8|2394|98
chr3_2 exon 83773733 83774323 83773733 ID=Msa0431710-mRNA-1:exon:23542;Parent=Msa0431710-mRNA-1
chr3_2 exon 83774452 83774605 83774452 ID=Msa0431710-mRNA-1:exon:23541;Parent=Msa0431710-mRNA-1
chr3_2 exon 83774690 83774907 83774690 ID=Msa0431710-mRNA-1:exon:23540;Parent=Msa0431710-mRNA-1
chr3_2 exon 83775252 83775380 83775252 ID=Msa0431710-mRNA-1:exon:23539;Parent=Msa0431710-mRNA-1
chr3_2 exon 83775545 83775655 83775545 ID=Msa0431710-mRNA-1:exon:23538;Parent=Msa0431710-mRNA-1
chr3_2 exon 83775899 83776030 83775899 ID=Msa0431710-mRNA-1:exon:23537;Parent=Msa0431710-mRNA-1
chr3_2 exon 83776160 83777337 83776160 ID=Msa0431710-mRNA-1:exon:23536;Parent=Msa0431710-mRNA-1
chr3_2 exon 83777555 83778223 83777555 ID=Msa0431710-mRNA-1:exon:23535;Parent=Msa0431710-mRNA-1
chr3_2 five_prime_UTR 83777733 83778223 83777733 ID=Msa0431710-mRNA-1:five_prime_utr;Parent=Msa0431710-mRNA-1
chr3_2 CDS 83777555 83777732 83777555 ID=Msa0431710-mRNA-1:cds;Parent=Msa0431710-mRNA-1
chr3_2 CDS 83777219 83777337 83777219 ID=Msa0431710-mRNA-1:cds;Parent=Msa0431710-mRNA-1
chr3_2 three_prime_UTR 83776160 83777218 83776160 ID=Msa0431710-mRNA-1:three_prime_utr;Parent=Msa0431710-mRNA-1
chr3_2 three_prime_UTR 83775899 83776030 83775899 ID=Msa0431710-mRNA-1:three_prime_utr;Parent=Msa0431710-mRNA-1
chr3_2 three_prime_UTR 83775545 83775655 83775545 ID=Msa0431710-mRNA-1:three_prime_utr;Parent=Msa0431710-mRNA-1
chr3_2 three_prime_UTR 83775252 83775380 83775252 ID=Msa0431710-mRNA-1:three_prime_utr;Parent=Msa0431710-mRNA-1
chr3_2 three_prime_UTR 83774690 83774907 83774690 ID=Msa0431710-mRNA-1:three_prime_utr;Parent=Msa0431710-mRNA-1
chr3_2 three_prime_UTR 83774452 83774605 83774452 ID=Msa0431710-mRNA-1:three_prime_utr;Parent=Msa0431710-mRNA-1
chr3_2 three_prime_UTR 83773733 83774323 83773733 ID=Msa0431710-mRNA-1:three_prime_utr;Parent=Msa0431710-mRNA-1
Gene Sequence

>Msa0431710

ATGGGTGGTGAGGGTAGAGTTGAAGTTGCGAGTGGCAAAGGGTGTTCGAGGCTGTTTTCGTCTTCAATCAGATCTCTTCAACCATTGGACCAAATGTCTCCTGTTTCATCCTCTCCGCAATTGCCATCAAATGCTCCTTTTGCTGGTCTTGTTATATGTGTTACCGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATCTGCATCCTCAATGTACTCATTTGGTGGTTCAGATATCCTTTCCTTCTAAATCATCTTGA
Protein sequence

>Msa0431710

MGGEGRVEVASGKGCSRLFSSSIRSLQPLDQMSPVSSSPQLPSNAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQISFPSKSS*