AlfalfaGEDB | Msa0546490

M. sativa cultivar zhongmu-4 / Msa0546490

KEGG: -
GO: -
PFAM: PF07795.14

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0546490	XP_003606344.1	92.126	254	15	3	1	250	1	253	2.81e-154	439

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0546490	G7JNB1	92.126	254	15	3	1	250	1	253	1.34e-154	439

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0029850	Msa0546490	0.819169	1.337195e-52	-8.615850e-47
Msa0105070	Msa0546490	0.813794	2.137530e-51	-8.615850e-47
Msa0169820	Msa0546490	0.824967	6.058745e-54	-8.615850e-47
Msa0170140	Msa0546490	0.811442	6.988089e-51	-8.615850e-47
Msa0188830	Msa0546490	0.801145	1.033800e-48	-8.615850e-47
Msa0234440	Msa0546490	0.801474	8.852055e-49	-8.615850e-47
Msa0376590	Msa0546490	0.826417	2.744609e-54	-8.615850e-47
Msa0388960	Msa0546490	0.803414	3.525315e-49	-8.615850e-47
Msa0272730	Msa0546490	0.816916	4.320660e-52	-8.615850e-47
Msa0338110	Msa0546490	0.800691	1.279958e-48	-8.615850e-47
Msa0516370	Msa0546490	0.820223	7.684806e-53	-8.615850e-47
Msa0546490	Msa0572420	0.856550	2.982406e-62	-8.615850e-47
Msa0546490	Msa0572480	0.810324	1.219714e-50	-8.615850e-47
Msa0546490	Msa0574850	0.811655	6.279094e-51	-8.615850e-47
Msa0546490	Msa0642540	0.816300	5.938986e-52	-8.615850e-47
Msa0546490	Msa0658570	0.826492	2.633442e-54	-8.615850e-47
Msa0546490	Msa0688070	0.814146	1.787561e-51	-8.615850e-47
Msa0546490	Msa0724210	0.818041	2.411061e-52	-8.615850e-47
Msa0546490	Msa0731940	0.805977	1.028847e-49	-8.615850e-47
Msa0546490	Msa0810220	0.800241	1.580798e-48	-8.615850e-47
Msa0546490	Msa0870530	0.805075	1.589933e-49	-8.615850e-47
Msa0546490	Msa0926900	0.823398	1.415049e-53	-8.615850e-47
Msa0546490	Msa0965600	0.803382	3.580202e-49	-8.615850e-47
Msa0546490	Msa0965610	0.807797	4.241865e-50	-8.615850e-47
Msa0546490	Msa1026300	0.808221	3.445461e-50	-8.615850e-47
Msa0546490	Msa1075220	-0.803529	3.337396e-49	-8.615850e-47
Msa0546490	Msa1084260	0.832671	8.277536e-56	-8.615850e-47
Msa0546490	Msa1098270	0.808041	3.763608e-50	-8.615850e-47
Msa0546490	Msa1139000	-0.803252	3.809742e-49	-8.615850e-47
Msa0546490	Msa1162550	-0.813597	2.362168e-51	-8.615850e-47
Msa0546490	Msa1207220	0.812070	5.099866e-51	-8.615850e-47
Msa0546490	Msa1224480	0.811240	7.727246e-51	-8.615850e-47
Msa0546490	Msa1267610	0.819164	1.340735e-52	-8.615850e-47
Msa0546490	Msa1288340	0.802194	6.299118e-49	-8.615850e-47
Msa0546490	Msa1297290	0.805636	1.213403e-49	-8.615850e-47
Msa0546490	Msa1299960	0.810000	1.432601e-50	-8.615850e-47
Msa0546490	Msa1374470	0.812668	3.776736e-51	-8.615850e-47
Msa0546490	Msa1376890	0.820983	5.140646e-53	-8.615850e-47
Msa0546490	Msa1376930	0.805932	1.051335e-49	-8.615850e-47
Msa0546490	Msa1385000	0.804392	2.208432e-49	-8.615850e-47
Msa0546490	Msa1392260	0.808997	2.352553e-50	-8.615850e-47
Msa0546490	Msa1423880	0.808340	3.249353e-50	-8.615850e-47
Msa0546490	Msa1457030	0.807159	5.791934e-50	-8.615850e-47
Msa0546490	Msa1457040	0.815112	1.092326e-51	-8.615850e-47
Msa0546490	Msa1460050	0.803687	3.095304e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0546490	MtrunA17_Chr4g0028161	92.126	254	15	3	1	250	1	253	2.59e-158	439
Msa0546490	MtrunA17_Chr2g0320271	64.093	259	61	9	1	248	1	238	2.04e-106	307
Msa0546490	MtrunA17_Chr1g0197151	41.736	242	98	6	10	250	8	207	7.10e-45	150
Msa0546490	MtrunA17_Chr4g0030841	36.967	211	75	8	23	196	16	205	3.59e-23	95.1
Msa0546490	MtrunA17_Chr2g0327801	32.227	211	103	8	13	196	7	204	9.97e-20	85.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0546490	AT5G22930.1	52.692	260	89	7	1	249	1	237	1.34e-82	247
Msa0546490	AT3G44940.1	51.128	266	92	7	5	250	3	250	5.21e-68	210
Msa0546490	AT2G28140.1	45.850	253	89	9	1	248	1	210	1.19e-55	177
Msa0546490	AT2G28690.1	37.500	200	94	6	12	195	8	192	3.02e-30	113
Msa0546490	AT5G59760.1	31.606	193	122	3	9	196	3	190	1.15e-21	90.5

Find 95 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCGTCTGATCTTAAATTAA+TGG	0.229367	4_1:-38221328	Msa0546490:three_prime_UTR
GATAAACCTTTGCCTGAAAA+AGG	0.287343	4_1:-38221718	Msa0546490:CDS
TTTGGTAATGTTTGGGGTGA+AGG	0.321802	4_1:-38221106	Msa0546490:three_prime_UTR
AGAGCATAGGGGAGGGAGTT+AGG	0.325439	4_1:-38222609	Msa0546490:five_prime_UTR
GGAGTCCAAGTAACTGTATA+AGG	0.351534	4_1:+38222515	None:intergenic
AGAAATGAGAAAAGAAGAAA+AGG	0.362600	4_1:+38222431	None:intergenic
TGCTGCTGCTGATGCTGTGC+TGG	0.364901	4_1:+38221553	None:intergenic
AATGTAGTAGAGATCTTTAT+AGG	0.369590	4_1:-38220860	Msa0546490:three_prime_UTR
AACGTACCCCTCTTCTATCT+TGG	0.371913	4_1:-38222356	Msa0546490:CDS
GAAATGAGAAAAGAAGAAAA+GGG	0.376470	4_1:+38222432	None:intergenic
GTTCTGTTCTTGTTTGTTGT+GGG	0.391019	4_1:+38221773	None:intergenic
TGGGAGAGAGACAGAGTTGT+GGG	0.399773	4_1:+38222406	None:intergenic
TAGGGGAGGGAGTTAGGATT+TGG	0.402988	4_1:-38222603	Msa0546490:five_prime_UTR
TGATAGTGATATTCCATTGT+TGG	0.406170	4_1:+38221822	None:intergenic
AGGAAGGTTGCCTTATAAAC+CGG	0.406966	4_1:+38222535	None:intergenic
GAAGATTCAATAGTAGGAAA+AGG	0.408995	4_1:-38221492	Msa0546490:CDS
ATTGAATCAATCATCATCAT+TGG	0.412861	4_1:+38221748	None:intergenic
ACCTTCCTTATACAGTTACT+TGG	0.414957	4_1:-38222520	Msa0546490:five_prime_UTR
AGATTCCAGACAAAGGATCT+TGG	0.415576	4_1:+38221893	None:intergenic
TTGGTAATGTTTGGGGTGAA+GGG	0.424989	4_1:-38221105	Msa0546490:three_prime_UTR
TGTTTCTTTGTGAAAGGAAA+AGG	0.430527	4_1:-38221045	Msa0546490:three_prime_UTR
AGAGTGTTAGGAGTGTTATG+AGG	0.442989	4_1:+38222462	None:intergenic
ACGTACCCCTCTTCTATCTT+GGG	0.445573	4_1:-38222355	Msa0546490:CDS
TGCTGATGCTGTGCTGGTTG+TGG	0.448367	4_1:+38221559	None:intergenic
AAGTGATTTGAGTGTGTGTA+TGG	0.450795	4_1:-38220977	Msa0546490:three_prime_UTR
GGGTGTCTCCATTGAGGTAA+TGG	0.451885	4_1:+38221634	None:intergenic
AAGATTCAATAGTAGGAAAA+GGG	0.453913	4_1:-38221491	Msa0546490:CDS
GTAATGGTCCTGCAAGCAAA+AGG	0.461418	4_1:+38221650	None:intergenic
CAAAACCAAGATCCTTTGTC+TGG	0.462496	4_1:-38221898	Msa0546490:CDS
TGTTCTGTTCTTGTTTGTTG+TGG	0.463846	4_1:+38221772	None:intergenic
CTGATCTAGCTTATGTATAG+TGG	0.465653	4_1:-38221179	Msa0546490:three_prime_UTR
GAAGTATAGGTACCTTTCCT+TGG	0.469839	4_1:+38222322	None:intergenic
TAGTAACAGTGCTAGGTAGT+AGG	0.471168	4_1:+38221400	None:intergenic
AATGATTAGCATTAGCAAGA+TGG	0.475888	4_1:-38221209	Msa0546490:three_prime_UTR
GAGTGTTAGGAGTGTTATGA+GGG	0.477852	4_1:+38222463	None:intergenic
GCTAGGTAGTAGGTAGTCAA+TGG	0.479342	4_1:+38221410	None:intergenic
ATTGAAGGTATCTTATAAGA+AGG	0.484497	4_1:+38222494	None:intergenic
AAGGACTCCAATGGTGGTGG+AGG	0.485852	4_1:+38221613	None:intergenic
AAACAAAACTAGAATGTGAA+TGG	0.487451	4_1:+38221063	None:intergenic
GTCCATGTTGTTATAAAGAG+TGG	0.490342	4_1:+38222386	None:intergenic
ATGAGGGATGGTTGAATTGA+AGG	0.491585	4_1:+38222479	None:intergenic
GTGGGAGAGAGACAGAGTTG+TGG	0.509113	4_1:+38222405	None:intergenic
ACTGTGGAAGATTCAATAGT+AGG	0.522881	4_1:-38221498	Msa0546490:CDS
ACCATTAATTTAAGATCAGA+CGG	0.523566	4_1:+38221327	None:intergenic
GATTCTTTATTATTGTTGCA+CGG	0.524918	4_1:-38220948	Msa0546490:three_prime_UTR
GAGACACCCTCCACCACCAT+TGG	0.528054	4_1:-38221620	Msa0546490:CDS
TTGCAGGACCATTACCTCAA+TGG	0.529726	4_1:-38221642	Msa0546490:CDS
AAATGAGAAAAGAAGAAAAG+GGG	0.530074	4_1:+38222433	None:intergenic
GTTAGGAGTGTTATGAGGGA+TGG	0.536015	4_1:+38222467	None:intergenic
TGGTTGTGGTGGTGAATGAA+TGG	0.536265	4_1:+38221573	None:intergenic
TTACAAGCAGTAATGAAAGC+TGG	0.536371	4_1:-38221688	Msa0546490:CDS
AGCAAAAGGGTCTGAAGCAA+AGG	0.539159	4_1:+38221664	None:intergenic
TTCTGTTCTTGTTTGTTGTG+GGG	0.540016	4_1:+38221774	None:intergenic
TAGCTTATGTATAGTGGTGG+AGG	0.541339	4_1:-38221173	Msa0546490:three_prime_UTR
GTCAATGGAGTACAATCCTC+CGG	0.548034	4_1:+38221425	None:intergenic
TCAAAGGACTCCAATGGTGG+TGG	0.550124	4_1:+38221610	None:intergenic
TGATGCTGTGCTGGTTGTGG+TGG	0.550620	4_1:+38221562	None:intergenic
GGAATTGAATCTTCCAACAA+TGG	0.550626	4_1:-38221835	Msa0546490:CDS
AGTAAGCCCAAGATAGAAGA+GGG	0.552955	4_1:+38222349	None:intergenic
TCCATGTTGTTATAAAGAGT+GGG	0.555106	4_1:+38222387	None:intergenic
AAGTCAATAGTAACAGTGCT+AGG	0.556813	4_1:+38221393	None:intergenic
TGTTCTTGTTTGTTGTGGGG+AGG	0.562798	4_1:+38221777	None:intergenic
CTTCATTCAACAAGTACTAG+AGG	0.563006	4_1:-38221373	Msa0546490:three_prime_UTR
CGGTACTTATTCTCAGCAGA+AGG	0.569769	4_1:+38221445	None:intergenic
GGAAGGTTGCCTTATAAACC+GGG	0.570490	4_1:+38222536	None:intergenic
TAATGGTCCTGCAAGCAAAA+GGG	0.574855	4_1:+38221651	None:intergenic
GGTGGAGGGTGTCTCCATTG+AGG	0.584272	4_1:+38221628	None:intergenic
ACTAGTTCTATCGATCGTAA+AGG	0.588104	4_1:-38220900	Msa0546490:three_prime_UTR
TCCTTTGTTAACAGTAACTG+TGG	0.593325	4_1:-38221514	Msa0546490:CDS
TCCAAGTAACTGTATAAGGA+AGG	0.595114	4_1:+38222519	None:intergenic
AGTGATTTGAGTGTGTGTAT+GGG	0.603082	4_1:-38220976	Msa0546490:three_prime_UTR
ATCTAGCTTATGTATAGTGG+TGG	0.604531	4_1:-38221176	Msa0546490:three_prime_UTR
ATCGATAGAACTAGTTCTAA+CGG	0.607254	4_1:+38220908	None:intergenic
AACGTTGATGTACACAACAA+TGG	0.610815	4_1:-38222079	Msa0546490:CDS
ATGCTTGAGATTCCAGACAA+AGG	0.616707	4_1:+38221886	None:intergenic
TCTTGGGCTTACTACTGCCA+AGG	0.616963	4_1:-38222339	Msa0546490:CDS
TAGTAAGCCCAAGATAGAAG+AGG	0.618226	4_1:+38222348	None:intergenic
GGCTTACTACTGCCAAGGAA+AGG	0.619012	4_1:-38222334	Msa0546490:intron
AGGACTCCAATGGTGGTGGA+GGG	0.621423	4_1:+38221614	None:intergenic
GGAATCTCAAAGGACTCCAA+TGG	0.624448	4_1:+38221604	None:intergenic
ATCTCAAAGGACTCCAATGG+TGG	0.631703	4_1:+38221607	None:intergenic
CTTCTGCTGAGAATAAGTAC+CGG	0.633475	4_1:-38221444	Msa0546490:CDS
GGTGGTGAATGAATGGTCAC+AGG	0.635892	4_1:+38221580	None:intergenic
GAACAACAACAACAAAAGAG+AGG	0.639959	4_1:-38221856	Msa0546490:CDS
GGTCACAGGTGGAATCTCAA+AGG	0.642891	4_1:+38221594	None:intergenic
CAAAACTAGAATGTGAATGG+AGG	0.644567	4_1:+38221066	None:intergenic
TCCCACTCTTTATAACAACA+TGG	0.644916	4_1:-38222388	Msa0546490:exon
CTGCTGAGAATAAGTACCGG+AGG	0.645253	4_1:-38221441	Msa0546490:CDS
TCCACAGTTACTGTTAACAA+AGG	0.647190	4_1:+38221513	None:intergenic
GTAACTAAATTAATGTAGTG+CGG	0.648112	4_1:-38221001	Msa0546490:three_prime_UTR
AACAGACAATAGGCAATCTG+TGG	0.649832	4_1:+38222580	None:intergenic
AAGGTTGCCTTATAAACCGG+GGG	0.660111	4_1:+38222538	None:intergenic
GGTGAATGAATGGTCACAGG+TGG	0.683123	4_1:+38221583	None:intergenic
GAAGGTTGCCTTATAAACCG+GGG	0.691430	4_1:+38222537	None:intergenic
GTAAGCCCAAGATAGAAGAG+GGG	0.693101	4_1:+38222350	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GTTAGTCTTATAAAATTAAA+AGG	+	chr4_1:38221265-38221284	None:intergenic	15.0%
!!!	AAAAACTAAGTTGATAAAAT+CGG	+	chr4_1:38222192-38222211	None:intergenic	15.0%
!!!	AGAAAAAAAATTCTTGATTT+TGG	-	chr4_1:38222333-38222352	Msa0546490:intron	15.0%
!!!	GAAAAAAAATTCTTGATTTT+GGG	-	chr4_1:38222334-38222353	Msa0546490:intron	15.0%
!!!	GTTTTTGTAATATAATTGTA+AGG	-	chr4_1:38222442-38222461	Msa0546490:five_prime_UTR	15.0%
!!!	GTTAGTCTTATAAAATTAAA+AGG	+	chr4_1:38221265-38221284	None:intergenic	15.0%
!!!	AAAAACTAAGTTGATAAAAT+CGG	+	chr4_1:38222192-38222211	None:intergenic	15.0%
!!!	AGAAAAAAAATTCTTGATTT+TGG	-	chr4_1:38222333-38222352	Msa0546490:intron	15.0%
!!!	GAAAAAAAATTCTTGATTTT+GGG	-	chr4_1:38222334-38222353	Msa0546490:intron	15.0%
!!!	GTTTTTGTAATATAATTGTA+AGG	-	chr4_1:38222442-38222461	Msa0546490:five_prime_UTR	15.0%
!	AAAACAGAAAAACAGACAAT+AGG	+	chr4_1:38220898-38220917	None:intergenic	25.0%
!!!	ATTGAAGGTATCTTATAAGA+AGG	+	chr4_1:38220974-38220993	None:intergenic	25.0%
!	AAATGAGAAAAGAAGAAAAG+GGG	+	chr4_1:38221035-38221054	None:intergenic	25.0%
!	GAAATGAGAAAAGAAGAAAA+GGG	+	chr4_1:38221036-38221055	None:intergenic	25.0%
!	AGAAATGAGAAAAGAAGAAA+AGG	+	chr4_1:38221037-38221056	None:intergenic	25.0%
!!	TAACGAAAGAAAAGAAGTAT+AGG	+	chr4_1:38221159-38221178	None:intergenic	25.0%
!	ATTCTTCATAGTTACATTTG+AGG	-	chr4_1:38221188-38221207	Msa0546490:three_prime_UTR	25.0%
!!	AAACATTTTGGATGAATAGT+GGG	+	chr4_1:38221215-38221234	None:intergenic	25.0%
!!	TAAACATTTTGGATGAATAG+TGG	+	chr4_1:38221216-38221235	None:intergenic	25.0%
!!!	AGTTAGTCTTGTAAACATTT+TGG	+	chr4_1:38221227-38221246	None:intergenic	25.0%
!!	CACTAATGATCATTTTACAA+CGG	+	chr4_1:38221308-38221327	None:intergenic	25.0%
!!	AATTTTTGTGATACAGTCAA+TGG	-	chr4_1:38221350-38221369	Msa0546490:three_prime_UTR	25.0%
!!	CTTTGTTGAAAAGTTCTTTT+AGG	+	chr4_1:38221476-38221495	None:intergenic	25.0%
!!!	ACTTTTCTAAGAAAAGTCTT+TGG	+	chr4_1:38221533-38221552	None:intergenic	25.0%
!	ATTGAATCAATCATCATCAT+TGG	+	chr4_1:38221720-38221739	None:intergenic	25.0%
!!	TGTAAAAGTTTACCTTTTTC+AGG	+	chr4_1:38221762-38221781	None:intergenic	25.0%
!	AAGATTCAATAGTAGGAAAA+GGG	-	chr4_1:38221974-38221993	Msa0546490:CDS	25.0%
!!	AGTACTAGAGGATTTTATTA+CGG	-	chr4_1:38222104-38222123	Msa0546490:intron	25.0%
!!	ACCATTAATTTAAGATCAGA+CGG	+	chr4_1:38222141-38222160	None:intergenic	25.0%
!!!	AATTCTTGATTTTGGGTTTT+TGG	-	chr4_1:38222341-38222360	Msa0546490:CDS	25.0%
!	AAACAAAACTAGAATGTGAA+TGG	+	chr4_1:38222405-38222424	None:intergenic	25.0%
!!!	TAGTTTTGTTTCTTTGTGAA+AGG	-	chr4_1:38222414-38222433	Msa0546490:five_prime_UTR	25.0%
!	GTAACTAAATTAATGTAGTG+CGG	-	chr4_1:38222464-38222483	Msa0546490:five_prime_UTR	25.0%
!	GATTCTTTATTATTGTTGCA+CGG	-	chr4_1:38222517-38222536	Msa0546490:five_prime_UTR	25.0%
!	AATGTAGTAGAGATCTTTAT+AGG	-	chr4_1:38222605-38222624	Msa0546490:five_prime_UTR	25.0%
!	AAAACAGAAAAACAGACAAT+AGG	+	chr4_1:38220898-38220917	None:intergenic	25.0%
!!!	ATTGAAGGTATCTTATAAGA+AGG	+	chr4_1:38220974-38220993	None:intergenic	25.0%
!	AAATGAGAAAAGAAGAAAAG+GGG	+	chr4_1:38221035-38221054	None:intergenic	25.0%
!	GAAATGAGAAAAGAAGAAAA+GGG	+	chr4_1:38221036-38221055	None:intergenic	25.0%
!	AGAAATGAGAAAAGAAGAAA+AGG	+	chr4_1:38221037-38221056	None:intergenic	25.0%
!!	TAACGAAAGAAAAGAAGTAT+AGG	+	chr4_1:38221159-38221178	None:intergenic	25.0%
!	ATTCTTCATAGTTACATTTG+AGG	-	chr4_1:38221188-38221207	Msa0546490:three_prime_UTR	25.0%
!!	AAACATTTTGGATGAATAGT+GGG	+	chr4_1:38221215-38221234	None:intergenic	25.0%
!!	TAAACATTTTGGATGAATAG+TGG	+	chr4_1:38221216-38221235	None:intergenic	25.0%
!!!	AGTTAGTCTTGTAAACATTT+TGG	+	chr4_1:38221227-38221246	None:intergenic	25.0%
!!	CACTAATGATCATTTTACAA+CGG	+	chr4_1:38221308-38221327	None:intergenic	25.0%
!!	AATTTTTGTGATACAGTCAA+TGG	-	chr4_1:38221350-38221369	Msa0546490:three_prime_UTR	25.0%
!!	CTTTGTTGAAAAGTTCTTTT+AGG	+	chr4_1:38221476-38221495	None:intergenic	25.0%
!!!	ACTTTTCTAAGAAAAGTCTT+TGG	+	chr4_1:38221533-38221552	None:intergenic	25.0%
!	ATTGAATCAATCATCATCAT+TGG	+	chr4_1:38221720-38221739	None:intergenic	25.0%
!!	TGTAAAAGTTTACCTTTTTC+AGG	+	chr4_1:38221762-38221781	None:intergenic	25.0%
!	AAGATTCAATAGTAGGAAAA+GGG	-	chr4_1:38221974-38221993	Msa0546490:CDS	25.0%
!!	AGTACTAGAGGATTTTATTA+CGG	-	chr4_1:38222104-38222123	Msa0546490:intron	25.0%
!!	ACCATTAATTTAAGATCAGA+CGG	+	chr4_1:38222141-38222160	None:intergenic	25.0%
!!!	AATTCTTGATTTTGGGTTTT+TGG	-	chr4_1:38222341-38222360	Msa0546490:CDS	25.0%
!	AAACAAAACTAGAATGTGAA+TGG	+	chr4_1:38222405-38222424	None:intergenic	25.0%
!!!	TAGTTTTGTTTCTTTGTGAA+AGG	-	chr4_1:38222414-38222433	Msa0546490:five_prime_UTR	25.0%
!	GTAACTAAATTAATGTAGTG+CGG	-	chr4_1:38222464-38222483	Msa0546490:five_prime_UTR	25.0%
!	GATTCTTTATTATTGTTGCA+CGG	-	chr4_1:38222517-38222536	Msa0546490:five_prime_UTR	25.0%
!	AATGTAGTAGAGATCTTTAT+AGG	-	chr4_1:38222605-38222624	Msa0546490:five_prime_UTR	25.0%
!	AATAGGATTTTGTAGAGCAT+AGG	-	chr4_1:38220843-38220862	Msa0546490:three_prime_UTR	30.0%
!	ATAGGATTTTGTAGAGCATA+GGG	-	chr4_1:38220844-38220863	Msa0546490:three_prime_UTR	30.0%
	TCCATGTTGTTATAAAGAGT+GGG	+	chr4_1:38221081-38221100	None:intergenic	30.0%
!	TGATAGTGATATTCCATTGT+TGG	+	chr4_1:38221646-38221665	None:intergenic	30.0%
	GAAGATTCAATAGTAGGAAA+AGG	-	chr4_1:38221973-38221992	Msa0546490:CDS	30.0%
	ACCGTCTGATCTTAAATTAA+TGG	-	chr4_1:38222137-38222156	Msa0546490:intron	30.0%
	AATGATTAGCATTAGCAAGA+TGG	-	chr4_1:38222256-38222275	Msa0546490:intron	30.0%
!!!	TTTGGGTTTTTGGTAATGTT+TGG	-	chr4_1:38222351-38222370	Msa0546490:CDS	30.0%
!!!	TTGGGTTTTTGGTAATGTTT+GGG	-	chr4_1:38222352-38222371	Msa0546490:CDS	30.0%
	TGTTTCTTTGTGAAAGGAAA+AGG	-	chr4_1:38222420-38222439	Msa0546490:five_prime_UTR	30.0%
!!	ATCGATAGAACTAGTTCTAA+CGG	+	chr4_1:38222560-38222579	None:intergenic	30.0%
!	AATAGGATTTTGTAGAGCAT+AGG	-	chr4_1:38220843-38220862	Msa0546490:three_prime_UTR	30.0%
!	ATAGGATTTTGTAGAGCATA+GGG	-	chr4_1:38220844-38220863	Msa0546490:three_prime_UTR	30.0%
	TCCATGTTGTTATAAAGAGT+GGG	+	chr4_1:38221081-38221100	None:intergenic	30.0%
!	TGATAGTGATATTCCATTGT+TGG	+	chr4_1:38221646-38221665	None:intergenic	30.0%
	GAAGATTCAATAGTAGGAAA+AGG	-	chr4_1:38221973-38221992	Msa0546490:CDS	30.0%
	ACCGTCTGATCTTAAATTAA+TGG	-	chr4_1:38222137-38222156	Msa0546490:intron	30.0%
	AATGATTAGCATTAGCAAGA+TGG	-	chr4_1:38222256-38222275	Msa0546490:intron	30.0%
!!!	TTTGGGTTTTTGGTAATGTT+TGG	-	chr4_1:38222351-38222370	Msa0546490:CDS	30.0%
!!!	TTGGGTTTTTGGTAATGTTT+GGG	-	chr4_1:38222352-38222371	Msa0546490:CDS	30.0%
	TGTTTCTTTGTGAAAGGAAA+AGG	-	chr4_1:38222420-38222439	Msa0546490:five_prime_UTR	30.0%
!!	ATCGATAGAACTAGTTCTAA+CGG	+	chr4_1:38222560-38222579	None:intergenic	30.0%
!	TAGGATTTTGTAGAGCATAG+GGG	-	chr4_1:38220845-38220864	Msa0546490:three_prime_UTR	35.0%
	ACCTTCCTTATACAGTTACT+TGG	-	chr4_1:38220945-38220964	Msa0546490:three_prime_UTR	35.0%
	TCCAAGTAACTGTATAAGGA+AGG	+	chr4_1:38220949-38220968	None:intergenic	35.0%
	TCCCACTCTTTATAACAACA+TGG	-	chr4_1:38221077-38221096	Msa0546490:three_prime_UTR	35.0%
	GTCCATGTTGTTATAAAGAG+TGG	+	chr4_1:38221082-38221101	None:intergenic	35.0%
	AACGTTGATGTACACAACAA+TGG	-	chr4_1:38221386-38221405	Msa0546490:three_prime_UTR	35.0%
!!!	AAGGATCTTGGTTTTGTTGT+TGG	+	chr4_1:38221563-38221582	None:intergenic	35.0%
	GAACAACAACAACAAAAGAG+AGG	-	chr4_1:38221609-38221628	Msa0546490:CDS	35.0%
	GGAATTGAATCTTCCAACAA+TGG	-	chr4_1:38221630-38221649	Msa0546490:CDS	35.0%
!!	TTCTGTTCTTGTTTGTTGTG+GGG	+	chr4_1:38221694-38221713	None:intergenic	35.0%
!!	GTTCTGTTCTTGTTTGTTGT+GGG	+	chr4_1:38221695-38221714	None:intergenic	35.0%
!	TGTTCTGTTCTTGTTTGTTG+TGG	+	chr4_1:38221696-38221715	None:intergenic	35.0%
	GATAAACCTTTGCCTGAAAA+AGG	-	chr4_1:38221747-38221766	Msa0546490:CDS	35.0%
!!!	AGTTTACCTTTTTCAGGCAA+AGG	+	chr4_1:38221756-38221775	None:intergenic	35.0%
	TTACAAGCAGTAATGAAAGC+TGG	-	chr4_1:38221777-38221796	Msa0546490:CDS	35.0%
	TCCTTTGTTAACAGTAACTG+TGG	-	chr4_1:38221951-38221970	Msa0546490:CDS	35.0%
	TCCACAGTTACTGTTAACAA+AGG	+	chr4_1:38221955-38221974	None:intergenic	35.0%
	ACTGTGGAAGATTCAATAGT+AGG	-	chr4_1:38221967-38221986	Msa0546490:CDS	35.0%
!!!	AGGAAAAGGGTTTTTTGTGA+AGG	-	chr4_1:38221987-38222006	Msa0546490:CDS	35.0%
	AAGTCAATAGTAACAGTGCT+AGG	+	chr4_1:38222075-38222094	None:intergenic	35.0%
	CTTCATTCAACAAGTACTAG+AGG	-	chr4_1:38222092-38222111	Msa0546490:CDS	35.0%
!	CTGATCTAGCTTATGTATAG+TGG	-	chr4_1:38222286-38222305	Msa0546490:intron	35.0%
!	ATCTAGCTTATGTATAGTGG+TGG	-	chr4_1:38222289-38222308	Msa0546490:intron	35.0%
!!!	TGGGTTTTTGGTAATGTTTG+GGG	-	chr4_1:38222353-38222372	Msa0546490:CDS	35.0%
	CAAAACTAGAATGTGAATGG+AGG	+	chr4_1:38222402-38222421	None:intergenic	35.0%
	AAGTGATTTGAGTGTGTGTA+TGG	-	chr4_1:38222488-38222507	Msa0546490:five_prime_UTR	35.0%
	AGTGATTTGAGTGTGTGTAT+GGG	-	chr4_1:38222489-38222508	Msa0546490:five_prime_UTR	35.0%
!!	ACTAGTTCTATCGATCGTAA+AGG	-	chr4_1:38222565-38222584	Msa0546490:five_prime_UTR	35.0%
!	TAGGATTTTGTAGAGCATAG+GGG	-	chr4_1:38220845-38220864	Msa0546490:three_prime_UTR	35.0%
	ACCTTCCTTATACAGTTACT+TGG	-	chr4_1:38220945-38220964	Msa0546490:three_prime_UTR	35.0%
	TCCAAGTAACTGTATAAGGA+AGG	+	chr4_1:38220949-38220968	None:intergenic	35.0%
	TCCCACTCTTTATAACAACA+TGG	-	chr4_1:38221077-38221096	Msa0546490:three_prime_UTR	35.0%
	GTCCATGTTGTTATAAAGAG+TGG	+	chr4_1:38221082-38221101	None:intergenic	35.0%
	AACGTTGATGTACACAACAA+TGG	-	chr4_1:38221386-38221405	Msa0546490:three_prime_UTR	35.0%
!!!	AAGGATCTTGGTTTTGTTGT+TGG	+	chr4_1:38221563-38221582	None:intergenic	35.0%
	GAACAACAACAACAAAAGAG+AGG	-	chr4_1:38221609-38221628	Msa0546490:CDS	35.0%
	GGAATTGAATCTTCCAACAA+TGG	-	chr4_1:38221630-38221649	Msa0546490:CDS	35.0%
!!	TTCTGTTCTTGTTTGTTGTG+GGG	+	chr4_1:38221694-38221713	None:intergenic	35.0%
!!	GTTCTGTTCTTGTTTGTTGT+GGG	+	chr4_1:38221695-38221714	None:intergenic	35.0%
!	TGTTCTGTTCTTGTTTGTTG+TGG	+	chr4_1:38221696-38221715	None:intergenic	35.0%
	GATAAACCTTTGCCTGAAAA+AGG	-	chr4_1:38221747-38221766	Msa0546490:CDS	35.0%
!!!	AGTTTACCTTTTTCAGGCAA+AGG	+	chr4_1:38221756-38221775	None:intergenic	35.0%
	TTACAAGCAGTAATGAAAGC+TGG	-	chr4_1:38221777-38221796	Msa0546490:CDS	35.0%
	TCCTTTGTTAACAGTAACTG+TGG	-	chr4_1:38221951-38221970	Msa0546490:CDS	35.0%
	TCCACAGTTACTGTTAACAA+AGG	+	chr4_1:38221955-38221974	None:intergenic	35.0%
	ACTGTGGAAGATTCAATAGT+AGG	-	chr4_1:38221967-38221986	Msa0546490:CDS	35.0%
!!!	AGGAAAAGGGTTTTTTGTGA+AGG	-	chr4_1:38221987-38222006	Msa0546490:CDS	35.0%
	AAGTCAATAGTAACAGTGCT+AGG	+	chr4_1:38222075-38222094	None:intergenic	35.0%
	CTTCATTCAACAAGTACTAG+AGG	-	chr4_1:38222092-38222111	Msa0546490:CDS	35.0%
!	CTGATCTAGCTTATGTATAG+TGG	-	chr4_1:38222286-38222305	Msa0546490:intron	35.0%
!	ATCTAGCTTATGTATAGTGG+TGG	-	chr4_1:38222289-38222308	Msa0546490:intron	35.0%
!!!	TGGGTTTTTGGTAATGTTTG+GGG	-	chr4_1:38222353-38222372	Msa0546490:CDS	35.0%
	CAAAACTAGAATGTGAATGG+AGG	+	chr4_1:38222402-38222421	None:intergenic	35.0%
	AAGTGATTTGAGTGTGTGTA+TGG	-	chr4_1:38222488-38222507	Msa0546490:five_prime_UTR	35.0%
	AGTGATTTGAGTGTGTGTAT+GGG	-	chr4_1:38222489-38222508	Msa0546490:five_prime_UTR	35.0%
!!	ACTAGTTCTATCGATCGTAA+AGG	-	chr4_1:38222565-38222584	Msa0546490:five_prime_UTR	35.0%
!	ATTTTGTAGAGCATAGGGGA+GGG	-	chr4_1:38220849-38220868	Msa0546490:three_prime_UTR	40.0%
	AACAGACAATAGGCAATCTG+TGG	+	chr4_1:38220888-38220907	None:intergenic	40.0%
	AGGAAGGTTGCCTTATAAAC+CGG	+	chr4_1:38220933-38220952	None:intergenic	40.0%
	GGAGTCCAAGTAACTGTATA+AGG	+	chr4_1:38220953-38220972	None:intergenic	40.0%
	ATGAGGGATGGTTGAATTGA+AGG	+	chr4_1:38220989-38221008	None:intergenic	40.0%
!!	GAGTGTTAGGAGTGTTATGA+GGG	+	chr4_1:38221005-38221024	None:intergenic	40.0%
!!	AGAGTGTTAGGAGTGTTATG+AGG	+	chr4_1:38221006-38221025	None:intergenic	40.0%
!!	AAGGGGAGAAAAAGAGTGTT+AGG	+	chr4_1:38221018-38221037	None:intergenic	40.0%
	AGTAAGCCCAAGATAGAAGA+GGG	+	chr4_1:38221119-38221138	None:intergenic	40.0%
	TAGTAAGCCCAAGATAGAAG+AGG	+	chr4_1:38221120-38221139	None:intergenic	40.0%
	GAAGTATAGGTACCTTTCCT+TGG	+	chr4_1:38221146-38221165	None:intergenic	40.0%
	CAAAACCAAGATCCTTTGTC+TGG	-	chr4_1:38221567-38221586	Msa0546490:CDS	40.0%
	AGATTCCAGACAAAGGATCT+TGG	+	chr4_1:38221575-38221594	None:intergenic	40.0%
	ATGCTTGAGATTCCAGACAA+AGG	+	chr4_1:38221582-38221601	None:intergenic	40.0%
	TAATGGTCCTGCAAGCAAAA+GGG	+	chr4_1:38221817-38221836	None:intergenic	40.0%
	CTTCTGCTGAGAATAAGTAC+CGG	-	chr4_1:38222021-38222040	Msa0546490:CDS	40.0%
	TAGTAACAGTGCTAGGTAGT+AGG	+	chr4_1:38222068-38222087	None:intergenic	40.0%
	TAGCTTATGTATAGTGGTGG+AGG	-	chr4_1:38222292-38222311	Msa0546490:intron	40.0%
!!	TTTGGTAATGTTTGGGGTGA+AGG	-	chr4_1:38222359-38222378	Msa0546490:CDS	40.0%
!!	TTGGTAATGTTTGGGGTGAA+GGG	-	chr4_1:38222360-38222379	Msa0546490:CDS	40.0%
!	ATTTTGTAGAGCATAGGGGA+GGG	-	chr4_1:38220849-38220868	Msa0546490:three_prime_UTR	40.0%
	AACAGACAATAGGCAATCTG+TGG	+	chr4_1:38220888-38220907	None:intergenic	40.0%
	AGGAAGGTTGCCTTATAAAC+CGG	+	chr4_1:38220933-38220952	None:intergenic	40.0%
	GGAGTCCAAGTAACTGTATA+AGG	+	chr4_1:38220953-38220972	None:intergenic	40.0%
	ATGAGGGATGGTTGAATTGA+AGG	+	chr4_1:38220989-38221008	None:intergenic	40.0%
!!	GAGTGTTAGGAGTGTTATGA+GGG	+	chr4_1:38221005-38221024	None:intergenic	40.0%
!!	AGAGTGTTAGGAGTGTTATG+AGG	+	chr4_1:38221006-38221025	None:intergenic	40.0%
!!	AAGGGGAGAAAAAGAGTGTT+AGG	+	chr4_1:38221018-38221037	None:intergenic	40.0%
	AGTAAGCCCAAGATAGAAGA+GGG	+	chr4_1:38221119-38221138	None:intergenic	40.0%
	TAGTAAGCCCAAGATAGAAG+AGG	+	chr4_1:38221120-38221139	None:intergenic	40.0%
	GAAGTATAGGTACCTTTCCT+TGG	+	chr4_1:38221146-38221165	None:intergenic	40.0%
	CAAAACCAAGATCCTTTGTC+TGG	-	chr4_1:38221567-38221586	Msa0546490:CDS	40.0%
	AGATTCCAGACAAAGGATCT+TGG	+	chr4_1:38221575-38221594	None:intergenic	40.0%
	ATGCTTGAGATTCCAGACAA+AGG	+	chr4_1:38221582-38221601	None:intergenic	40.0%
	TAATGGTCCTGCAAGCAAAA+GGG	+	chr4_1:38221817-38221836	None:intergenic	40.0%
	CTTCTGCTGAGAATAAGTAC+CGG	-	chr4_1:38222021-38222040	Msa0546490:CDS	40.0%
	TAGTAACAGTGCTAGGTAGT+AGG	+	chr4_1:38222068-38222087	None:intergenic	40.0%
	TAGCTTATGTATAGTGGTGG+AGG	-	chr4_1:38222292-38222311	Msa0546490:intron	40.0%
!!	TTTGGTAATGTTTGGGGTGA+AGG	-	chr4_1:38222359-38222378	Msa0546490:CDS	40.0%
!!	TTGGTAATGTTTGGGGTGAA+GGG	-	chr4_1:38222360-38222379	Msa0546490:CDS	40.0%
!	GATTTTGTAGAGCATAGGGG+AGG	-	chr4_1:38220848-38220867	Msa0546490:three_prime_UTR	45.0%
!!!	CTGTTTTTTTCTCCAACCCC+CGG	-	chr4_1:38220911-38220930	Msa0546490:three_prime_UTR	45.0%
	AAGGTTGCCTTATAAACCGG+GGG	+	chr4_1:38220930-38220949	None:intergenic	45.0%
	GAAGGTTGCCTTATAAACCG+GGG	+	chr4_1:38220931-38220950	None:intergenic	45.0%
	GGAAGGTTGCCTTATAAACC+GGG	+	chr4_1:38220932-38220951	None:intergenic	45.0%
!!	GTTAGGAGTGTTATGAGGGA+TGG	+	chr4_1:38221001-38221020	None:intergenic	45.0%
	AACGTACCCCTCTTCTATCT+TGG	-	chr4_1:38221109-38221128	Msa0546490:three_prime_UTR	45.0%
	ACGTACCCCTCTTCTATCTT+GGG	-	chr4_1:38221110-38221129	Msa0546490:three_prime_UTR	45.0%
	GTAAGCCCAAGATAGAAGAG+GGG	+	chr4_1:38221118-38221137	None:intergenic	45.0%
!!	TGTTCTTGTTTGTTGTGGGG+AGG	+	chr4_1:38221691-38221710	None:intergenic	45.0%
!	AGCAAAAGGGTCTGAAGCAA+AGG	+	chr4_1:38221804-38221823	None:intergenic	45.0%
	GTAATGGTCCTGCAAGCAAA+AGG	+	chr4_1:38221818-38221837	None:intergenic	45.0%
	TTGCAGGACCATTACCTCAA+TGG	-	chr4_1:38221823-38221842	Msa0546490:CDS	45.0%
	ATCTCAAAGGACTCCAATGG+TGG	+	chr4_1:38221861-38221880	None:intergenic	45.0%
	GGAATCTCAAAGGACTCCAA+TGG	+	chr4_1:38221864-38221883	None:intergenic	45.0%
!	TGGTTGTGGTGGTGAATGAA+TGG	+	chr4_1:38221895-38221914	None:intergenic	45.0%
	CGGTACTTATTCTCAGCAGA+AGG	+	chr4_1:38222023-38222042	None:intergenic	45.0%
	GTCAATGGAGTACAATCCTC+CGG	+	chr4_1:38222043-38222062	None:intergenic	45.0%
	GCTAGGTAGTAGGTAGTCAA+TGG	+	chr4_1:38222058-38222077	None:intergenic	45.0%
	GTGAATGGAGGAAAAAGCCA+AGG	+	chr4_1:38222390-38222409	None:intergenic	45.0%
!	GATTTTGTAGAGCATAGGGG+AGG	-	chr4_1:38220848-38220867	Msa0546490:three_prime_UTR	45.0%
!!!	CTGTTTTTTTCTCCAACCCC+CGG	-	chr4_1:38220911-38220930	Msa0546490:three_prime_UTR	45.0%
	AAGGTTGCCTTATAAACCGG+GGG	+	chr4_1:38220930-38220949	None:intergenic	45.0%
	GAAGGTTGCCTTATAAACCG+GGG	+	chr4_1:38220931-38220950	None:intergenic	45.0%
	GGAAGGTTGCCTTATAAACC+GGG	+	chr4_1:38220932-38220951	None:intergenic	45.0%
!!	GTTAGGAGTGTTATGAGGGA+TGG	+	chr4_1:38221001-38221020	None:intergenic	45.0%
	AACGTACCCCTCTTCTATCT+TGG	-	chr4_1:38221109-38221128	Msa0546490:three_prime_UTR	45.0%
	ACGTACCCCTCTTCTATCTT+GGG	-	chr4_1:38221110-38221129	Msa0546490:three_prime_UTR	45.0%
	GTAAGCCCAAGATAGAAGAG+GGG	+	chr4_1:38221118-38221137	None:intergenic	45.0%
!!	TGTTCTTGTTTGTTGTGGGG+AGG	+	chr4_1:38221691-38221710	None:intergenic	45.0%
!	AGCAAAAGGGTCTGAAGCAA+AGG	+	chr4_1:38221804-38221823	None:intergenic	45.0%
	GTAATGGTCCTGCAAGCAAA+AGG	+	chr4_1:38221818-38221837	None:intergenic	45.0%
	TTGCAGGACCATTACCTCAA+TGG	-	chr4_1:38221823-38221842	Msa0546490:CDS	45.0%
	ATCTCAAAGGACTCCAATGG+TGG	+	chr4_1:38221861-38221880	None:intergenic	45.0%
	GGAATCTCAAAGGACTCCAA+TGG	+	chr4_1:38221864-38221883	None:intergenic	45.0%
!	TGGTTGTGGTGGTGAATGAA+TGG	+	chr4_1:38221895-38221914	None:intergenic	45.0%
	CGGTACTTATTCTCAGCAGA+AGG	+	chr4_1:38222023-38222042	None:intergenic	45.0%
	GTCAATGGAGTACAATCCTC+CGG	+	chr4_1:38222043-38222062	None:intergenic	45.0%
	GCTAGGTAGTAGGTAGTCAA+TGG	+	chr4_1:38222058-38222077	None:intergenic	45.0%
	GTGAATGGAGGAAAAAGCCA+AGG	+	chr4_1:38222390-38222409	None:intergenic	45.0%
	TAGGGGAGGGAGTTAGGATT+TGG	-	chr4_1:38220862-38220881	Msa0546490:three_prime_UTR	50.0%
	TCTCCAACCCCCGGTTTATA+AGG	-	chr4_1:38220920-38220939	Msa0546490:three_prime_UTR	50.0%
	TTGCCTTATAAACCGGGGGT+TGG	+	chr4_1:38220926-38220945	None:intergenic	50.0%
	TGGGAGAGAGACAGAGTTGT+GGG	+	chr4_1:38221062-38221081	None:intergenic	50.0%
	TCTTGGGCTTACTACTGCCA+AGG	-	chr4_1:38221126-38221145	Msa0546490:three_prime_UTR	50.0%
	GGCTTACTACTGCCAAGGAA+AGG	-	chr4_1:38221131-38221150	Msa0546490:three_prime_UTR	50.0%
!	CTTCAGACCCTTTTGCTTGC+AGG	-	chr4_1:38221807-38221826	Msa0546490:CDS	50.0%
	GGGTGTCTCCATTGAGGTAA+TGG	+	chr4_1:38221834-38221853	None:intergenic	50.0%
	TCAAAGGACTCCAATGGTGG+TGG	+	chr4_1:38221858-38221877	None:intergenic	50.0%
	GGTCACAGGTGGAATCTCAA+AGG	+	chr4_1:38221874-38221893	None:intergenic	50.0%
	GGTGAATGAATGGTCACAGG+TGG	+	chr4_1:38221885-38221904	None:intergenic	50.0%
	GGTGGTGAATGAATGGTCAC+AGG	+	chr4_1:38221888-38221907	None:intergenic	50.0%
!!	CTGCTGAGAATAAGTACCGG+AGG	-	chr4_1:38222024-38222043	Msa0546490:CDS	50.0%
!	TTGGGGTGAAGGGTTTTCCT+TGG	-	chr4_1:38222370-38222389	Msa0546490:CDS	50.0%
	TAGGGGAGGGAGTTAGGATT+TGG	-	chr4_1:38220862-38220881	Msa0546490:three_prime_UTR	50.0%
	TCTCCAACCCCCGGTTTATA+AGG	-	chr4_1:38220920-38220939	Msa0546490:three_prime_UTR	50.0%
	TTGCCTTATAAACCGGGGGT+TGG	+	chr4_1:38220926-38220945	None:intergenic	50.0%
	TGGGAGAGAGACAGAGTTGT+GGG	+	chr4_1:38221062-38221081	None:intergenic	50.0%
	TCTTGGGCTTACTACTGCCA+AGG	-	chr4_1:38221126-38221145	Msa0546490:three_prime_UTR	50.0%
	GGCTTACTACTGCCAAGGAA+AGG	-	chr4_1:38221131-38221150	Msa0546490:three_prime_UTR	50.0%
!	CTTCAGACCCTTTTGCTTGC+AGG	-	chr4_1:38221807-38221826	Msa0546490:CDS	50.0%
	GGGTGTCTCCATTGAGGTAA+TGG	+	chr4_1:38221834-38221853	None:intergenic	50.0%
	TCAAAGGACTCCAATGGTGG+TGG	+	chr4_1:38221858-38221877	None:intergenic	50.0%
	GGTCACAGGTGGAATCTCAA+AGG	+	chr4_1:38221874-38221893	None:intergenic	50.0%
	GGTGAATGAATGGTCACAGG+TGG	+	chr4_1:38221885-38221904	None:intergenic	50.0%
	GGTGGTGAATGAATGGTCAC+AGG	+	chr4_1:38221888-38221907	None:intergenic	50.0%
!!	CTGCTGAGAATAAGTACCGG+AGG	-	chr4_1:38222024-38222043	Msa0546490:CDS	50.0%
!	TTGGGGTGAAGGGTTTTCCT+TGG	-	chr4_1:38222370-38222389	Msa0546490:CDS	50.0%
	AGAGCATAGGGGAGGGAGTT+AGG	-	chr4_1:38220856-38220875	Msa0546490:three_prime_UTR	55.0%
	GTGGGAGAGAGACAGAGTTG+TGG	+	chr4_1:38221063-38221082	None:intergenic	55.0%
!!	AGGACTCCAATGGTGGTGGA+GGG	+	chr4_1:38221854-38221873	None:intergenic	55.0%
!!	AAGGACTCCAATGGTGGTGG+AGG	+	chr4_1:38221855-38221874	None:intergenic	55.0%
!!	TGATGCTGTGCTGGTTGTGG+TGG	+	chr4_1:38221906-38221925	None:intergenic	55.0%
!!	TGCTGATGCTGTGCTGGTTG+TGG	+	chr4_1:38221909-38221928	None:intergenic	55.0%
	AGAGCATAGGGGAGGGAGTT+AGG	-	chr4_1:38220856-38220875	Msa0546490:three_prime_UTR	55.0%
	GTGGGAGAGAGACAGAGTTG+TGG	+	chr4_1:38221063-38221082	None:intergenic	55.0%
!!	AGGACTCCAATGGTGGTGGA+GGG	+	chr4_1:38221854-38221873	None:intergenic	55.0%
!!	AAGGACTCCAATGGTGGTGG+AGG	+	chr4_1:38221855-38221874	None:intergenic	55.0%
!!	TGATGCTGTGCTGGTTGTGG+TGG	+	chr4_1:38221906-38221925	None:intergenic	55.0%
!!	TGCTGATGCTGTGCTGGTTG+TGG	+	chr4_1:38221909-38221928	None:intergenic	55.0%
!!	GGTGGAGGGTGTCTCCATTG+AGG	+	chr4_1:38221840-38221859	None:intergenic	60.0%
	GAGACACCCTCCACCACCAT+TGG	-	chr4_1:38221845-38221864	Msa0546490:CDS	60.0%
	TGCTGCTGCTGATGCTGTGC+TGG	+	chr4_1:38221915-38221934	None:intergenic	60.0%
!!	GGTGGAGGGTGTCTCCATTG+AGG	+	chr4_1:38221840-38221859	None:intergenic	60.0%
	GAGACACCCTCCACCACCAT+TGG	-	chr4_1:38221845-38221864	Msa0546490:CDS	60.0%
	TGCTGCTGCTGATGCTGTGC+TGG	+	chr4_1:38221915-38221934	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	38220842	38222645	38220842	ID=Msa0546490;Name=Msa0546490
chr4_1	mRNA	38220842	38222645	38220842	ID=Msa0546490-mRNA-1;Parent=Msa0546490;Name=Msa0546490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=254\|1\|1\|1\|1\|1\|2\|584\|250
chr4_1	exon	38220842	38222121	38220842	ID=Msa0546490-mRNA-1:exon:9793;Parent=Msa0546490-mRNA-1
chr4_1	exon	38222335	38222645	38222335	ID=Msa0546490-mRNA-1:exon:9792;Parent=Msa0546490-mRNA-1
chr4_1	five_prime_UTR	38222392	38222645	38222392	ID=Msa0546490-mRNA-1:five_prime_utr;Parent=Msa0546490-mRNA-1
chr4_1	CDS	38222335	38222391	38222335	ID=Msa0546490-mRNA-1:cds;Parent=Msa0546490-mRNA-1
chr4_1	CDS	38221426	38222121	38221426	ID=Msa0546490-mRNA-1:cds;Parent=Msa0546490-mRNA-1
chr4_1	three_prime_UTR	38220842	38221425	38220842	ID=Msa0546490-mRNA-1:three_prime_utr;Parent=Msa0546490-mRNA-1

Gene Sequence

>Msa0546490

ATGGACAATCAACAACGTACCCCTCTTCTATCTTGGGCTTACTACTGCCAAGGAAAGTCAATGGATGAGTTGAAACAAACGTTGATGTACACAACAATGGAGCTAGAACAAACAAGAGTAACAGTACAAGAAGAACTAAGAAAAAGAGATGAACAACTACATAACCTAAAAGAACTTTTCAACAAAGTTGTAAGAGAAAGAGATGAAGCACAAGAAAAATGCCAAAGACTTTTCTTAGAAAAGTTACTTTTCCAACAACAAAACCAAGATCCTTTGTCTGGAATCTCAAGCATTGAAGATGAACAACAACAACAAAAGAGAGGAATTGAATCTTCCAACAATGGAATATCACTATCAGATTGTGAAGAAAGCATAGTATCCTCCCCACAACAAACAAGAACAGAACAACCAATGATGATGATTGATTCAATAGCAAAAGATAAACCTTTGCCTGAAAAAGGTAAACTTTTACAAGCAGTAATGAAAGCTGGTCCTTTGCTTCAGACCCTTTTGCTTGCAGGACCATTACCTCAATGGAGACACCCTCCACCACCATTGGAGTCCTTTGAGATTCCACCTGTGACCATTCATTCACCACCACAACCAGCACAGCATCAGCAGCAGCAACTACTTCATCAAGAGTCCTTTGTTAACAGTAACTGTGGAAGATTCAATAGTAGGAAAAGGGTTTTTTGTGAAGGTTCTGATTCTCCTTCTGCTGAGAATAAGTACCGGAGGATTGTACTCCATTGA

Protein sequence

>Msa0546490

MDNQQRTPLLSWAYYCQGKSMDELKQTLMYTTMELEQTRVTVQEELRKRDEQLHNLKELFNKVVRERDEAQEKCQRLFLEKLLFQQQNQDPLSGISSIEDEQQQQKRGIESSNNGISLSDCEESIVSSPQQTRTEQPMMMIDSIAKDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPPLESFEIPPVTIHSPPQPAQHQQQQLLHQESFVNSNCGRFNSRKRVFCEGSDSPSAENKYRRIVLH*