Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094470 | Msa0562280 | 0.801618 | 8.271203e-49 | -8.615850e-47 |
| Msa0159170 | Msa0562280 | 0.818690 | 1.718275e-52 | -8.615850e-47 |
| Msa0168230 | Msa0562280 | 0.801552 | 8.533480e-49 | -8.615850e-47 |
| Msa0220720 | Msa0562280 | 0.820429 | 6.893149e-53 | -8.615850e-47 |
| Msa0388700 | Msa0562280 | 0.806768 | 7.007317e-50 | -8.615850e-47 |
| Msa0395820 | Msa0562280 | 0.809856 | 1.538815e-50 | -8.615850e-47 |
| Msa0482130 | Msa0562280 | 0.809555 | 1.785886e-50 | -8.615850e-47 |
| Msa0299870 | Msa0562280 | 0.811019 | 8.631402e-51 | -8.615850e-47 |
| Msa0337240 | Msa0562280 | 0.811458 | 6.930282e-51 | -8.615850e-47 |
| Msa0351990 | Msa0562280 | 0.800085 | 1.700284e-48 | -8.615850e-47 |
| Msa0493410 | Msa0562280 | 0.804044 | 2.609739e-49 | -8.615850e-47 |
| Msa0542090 | Msa0562280 | 0.801198 | 1.008037e-48 | -8.615850e-47 |
| Msa0562280 | Msa0643560 | 0.802334 | 5.892982e-49 | -8.615850e-47 |
| Msa0562280 | Msa0689260 | 0.831068 | 2.058340e-55 | -8.615850e-47 |
| Msa0562280 | Msa0692830 | 0.802821 | 4.676298e-49 | -8.615850e-47 |
| Msa0562280 | Msa0711780 | 0.802776 | 4.777625e-49 | -8.615850e-47 |
| Msa0562280 | Msa0788850 | 0.831243 | 1.864142e-55 | -8.615850e-47 |
| Msa0562280 | Msa0794670 | 0.802302 | 5.983699e-49 | -8.615850e-47 |
| Msa0562280 | Msa0989540 | 0.808445 | 3.086490e-50 | -8.615850e-47 |
| Msa0562280 | Msa1006840 | 0.803060 | 4.173276e-49 | -8.615850e-47 |
| Msa0562280 | Msa1013400 | 0.809749 | 1.622147e-50 | -8.615850e-47 |
| Msa0562280 | Msa1051200 | 0.809724 | 1.642176e-50 | -8.615850e-47 |
| Msa0562280 | Msa1081930 | 0.814180 | 1.756866e-51 | -8.615850e-47 |
| Msa0562280 | Msa1160590 | 0.822892 | 1.857452e-53 | -8.615850e-47 |
| Msa0562280 | Msa1181250 | 0.806649 | 7.422805e-50 | -8.615850e-47 |
| Msa0562280 | Msa1181330 | 0.802388 | 5.745249e-49 | -8.615850e-47 |
| Msa0562280 | Msa1358250 | 0.830114 | 3.523848e-55 | -8.615850e-47 |
| Msa0562280 | Msa1392780 | 0.803931 | 2.754388e-49 | -8.615850e-47 |
| Msa0562280 | Msa1394290 | 0.821699 | 3.514530e-53 | -8.615850e-47 |
| Msa0562280 | Msa1419870 | 0.810448 | 1.146985e-50 | -8.615850e-47 |
| Msa0562280 | Msa1457920 | 0.830829 | 2.355960e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 18 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTATCAAATGGGGAATT+TGG | 0.130501 | 4_1:-61964174 | None:intergenic |
| TACTTTGTATTAATGCAAAA+TGG | 0.251909 | 4_1:-61964225 | None:intergenic |
| ATCTATCAAATGGGGAATTT+GGG | 0.276524 | 4_1:-61964173 | None:intergenic |
| CAAATTCCCCATTTGATAGA+TGG | 0.294471 | 4_1:+61964175 | Msa0562280:CDS |
| GCCTGCCGACATAAATGTTT+GGG | 0.347784 | 4_1:+61961661 | None:intergenic |
| GGCCTGCCGACATAAATGTT+TGG | 0.373077 | 4_1:+61961660 | None:intergenic |
| CAATTAAGCCATCTATCAAA+TGG | 0.384545 | 4_1:-61964183 | None:intergenic |
| AATTAAGCCATCTATCAAAT+GGG | 0.415313 | 4_1:-61964182 | None:intergenic |
| ATTTGAATTTAAGTGCAAGT+TGG | 0.495066 | 4_1:-61964147 | None:intergenic |
| AAGTGCAAGTTGGTAAGAGT+TGG | 0.500362 | 4_1:-61964137 | None:intergenic |
| TAGATGGAGGGAATTCTTCA+AGG | 0.508083 | 4_1:+61963174 | Msa0562280:intron |
| GAGACAAATGCTCAAAGCTC+AGG | 0.519278 | 4_1:+61963227 | Msa0562280:CDS |
| CGTTTATCATTTCTGCAACA+AGG | 0.531767 | 4_1:+61964106 | Msa0562280:CDS |
| TCTATCAAATGGGGAATTTG+GGG | 0.567067 | 4_1:-61964172 | None:intergenic |
| ATAAACGTTGATTTCCCACC+AGG | 0.567312 | 4_1:-61964090 | None:intergenic |
| CGTTGTTGCATGTAGATGGA+GGG | 0.589194 | 4_1:+61963162 | Msa0562280:intron |
| ATTAAGCCATCTATCAAATG+GGG | 0.635793 | 4_1:-61964181 | None:intergenic |
| CTATCAAATGGGGAATTTGG+GGG | 0.649875 | 4_1:-61964171 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTTAATAATCATAACA+AGG | + | chr4_1:61962562-61962581 | Msa0562280:intron | 10.0% |
| !! | TTATTTAATAATCATAACAA+GGG | + | chr4_1:61962563-61962582 | Msa0562280:intron | 10.0% |
| !!! | TTGTAAAATTGATTTATATT+TGG | - | chr4_1:61962943-61962962 | None:intergenic | 10.0% |
| !! | TGTATAAAATATATCTACTT+TGG | + | chr4_1:61962340-61962359 | Msa0562280:intron | 15.0% |
| !!! | TACATTTTCTTTTCTTTTTT+CGG | - | chr4_1:61962638-61962657 | None:intergenic | 15.0% |
| !!! | AACAAAAGTATATTTCAAAA+CGG | - | chr4_1:61963374-61963393 | None:intergenic | 15.0% |
| !!! | TTTTGAAATATACTTTTGTT+TGG | + | chr4_1:61963374-61963393 | Msa0562280:intron | 15.0% |
| !!! | ATTTTAATTTCAAGAAACAA+AGG | + | chr4_1:61963570-61963589 | Msa0562280:intron | 15.0% |
| !! | AGCAATTATAAAAATGTAAA+AGG | - | chr4_1:61963692-61963711 | None:intergenic | 15.0% |
| !! | AAATAGTAGATTAAAACATA+CGG | - | chr4_1:61964061-61964080 | None:intergenic | 15.0% |
| !!! | ATTTTAACTAGCTAATAAGA+TGG | - | chr4_1:61962100-61962119 | None:intergenic | 20.0% |
| !! | AAAATGTTTCACAAAGTAAA+CGG | + | chr4_1:61962148-61962167 | Msa0562280:intron | 20.0% |
| !! | TATGTTTACAAGTGAATAAT+TGG | + | chr4_1:61962189-61962208 | Msa0562280:intron | 20.0% |
| !!! | GGTTATTTAAGATAAGTTAT+TGG | + | chr4_1:61962361-61962380 | Msa0562280:intron | 20.0% |
| !! | TTAAAACCGTTAAAAGATAT+AGG | - | chr4_1:61962459-61962478 | None:intergenic | 20.0% |
| !!! | AAATTTGATTTTGACATGTT+TGG | + | chr4_1:61962805-61962824 | Msa0562280:intron | 20.0% |
| !! | TAAAGAAGAAATTGAAAGTT+TGG | - | chr4_1:61963028-61963047 | None:intergenic | 20.0% |
| !! | AAGTTTATTTGTCAAAACAT+TGG | + | chr4_1:61963475-61963494 | Msa0562280:intron | 20.0% |
| !! | ATAACTATATTAAGTCAACA+AGG | + | chr4_1:61963512-61963531 | Msa0562280:intron | 20.0% |
| !! | TAACTATATTAAGTCAACAA+GGG | + | chr4_1:61963513-61963532 | Msa0562280:intron | 20.0% |
| !! | AAATAAAGGATGTGAATAAA+TGG | + | chr4_1:61963624-61963643 | Msa0562280:intron | 20.0% |
| !!! | GAATTAAAGAAAGCAATTTT+TGG | - | chr4_1:61963728-61963747 | None:intergenic | 20.0% |
| !! | AATCAATATTGTTTAGACTT+TGG | + | chr4_1:61963937-61963956 | Msa0562280:intron | 20.0% |
| !!! | CAAAATGGATTTTTTTCTTT+GGG | - | chr4_1:61964213-61964232 | None:intergenic | 20.0% |
| !! | TACTTTGTATTAATGCAAAA+TGG | - | chr4_1:61964228-61964247 | None:intergenic | 20.0% |
| ! | TAGTGAGTTCATTAATTTAG+AGG | + | chr4_1:61961844-61961863 | Msa0562280:intron | 25.0% |
| !! | GATAATGAAAACAATGCTTT+TGG | - | chr4_1:61962007-61962026 | None:intergenic | 25.0% |
| !! | AATTAGGGGTTATGTATTTT+TGG | - | chr4_1:61962031-61962050 | None:intergenic | 25.0% |
| ! | AGAAAGTGAAATGCTAATTA+GGG | - | chr4_1:61962046-61962065 | None:intergenic | 25.0% |
| ! | AAATGTTTCACAAAGTAAAC+GGG | + | chr4_1:61962149-61962168 | Msa0562280:intron | 25.0% |
| ! | TTTACAAGTGAATAATTGGT+AGG | + | chr4_1:61962193-61962212 | Msa0562280:intron | 25.0% |
| !! | GTTTGACCTATATCTTTTAA+CGG | + | chr4_1:61962450-61962469 | Msa0562280:intron | 25.0% |
| !! | GATAAAATTCAAAGAGTATG+AGG | - | chr4_1:61963064-61963083 | None:intergenic | 25.0% |
| ! | CATAATCCAATTAGAGAAAA+GGG | - | chr4_1:61963112-61963131 | None:intergenic | 25.0% |
| !! | CTTTTCTCTAATTGGATTAT+GGG | + | chr4_1:61963111-61963130 | Msa0562280:intron | 25.0% |
| !! | TTTTCTCTAATTGGATTATG+GGG | + | chr4_1:61963112-61963131 | Msa0562280:intron | 25.0% |
| !! | CAAAATTTTACAGCAGAATT+TGG | - | chr4_1:61963331-61963350 | None:intergenic | 25.0% |
| !! | AATTTTGCCGGTAAAATATT+AGG | + | chr4_1:61963344-61963363 | Msa0562280:intron | 25.0% |
| ! | AATTCTATAGTGCACAAATT+AGG | + | chr4_1:61963743-61963762 | Msa0562280:intron | 25.0% |
| !!! | GTAAAATTGATTTGATTCAG+CGG | - | chr4_1:61963801-61963820 | None:intergenic | 25.0% |
| ! | ATTTGAATTTAAGTGCAAGT+TGG | - | chr4_1:61964150-61964169 | None:intergenic | 25.0% |
| ! | AATTAAGCCATCTATCAAAT+GGG | - | chr4_1:61964185-61964204 | None:intergenic | 25.0% |
| !!! | GCAAAATGGATTTTTTTCTT+TGG | - | chr4_1:61964214-61964233 | None:intergenic | 25.0% |
| GATTCCAAATATTCAAACAG+AGG | - | chr4_1:61961755-61961774 | None:intergenic | 30.0% | |
| ACTCACTATAGTATAAAGAG+AGG | - | chr4_1:61961832-61961851 | None:intergenic | 30.0% | |
| ! | GAAACGTTTTCACAAAGTTT+AGG | - | chr4_1:61961878-61961897 | None:intergenic | 30.0% |
| GAAAGTGAAATGCTAATTAG+GGG | - | chr4_1:61962045-61962064 | None:intergenic | 30.0% | |
| GAGAAAGTGAAATGCTAATT+AGG | - | chr4_1:61962047-61962066 | None:intergenic | 30.0% | |
| TTAACTAGCTAATAAGATGG+AGG | - | chr4_1:61962097-61962116 | None:intergenic | 30.0% | |
| TAGCAGTTGAAGAAAACATA+TGG | + | chr4_1:61962222-61962241 | Msa0562280:intron | 30.0% | |
| !! | TCAGTTGTAGAACTTGTTTT+AGG | + | chr4_1:61962252-61962271 | Msa0562280:intron | 30.0% |
| !!! | TAGAACTTGTTTTAGGAGAT+TGG | + | chr4_1:61962259-61962278 | Msa0562280:intron | 30.0% |
| ACAAGAAGGAATTGTAACAT+AGG | - | chr4_1:61962432-61962451 | None:intergenic | 30.0% | |
| AAGATATAGGTCAAACAAGA+AGG | - | chr4_1:61962446-61962465 | None:intergenic | 30.0% | |
| TATGTTCAAGTCATGTCTTA+AGG | + | chr4_1:61962517-61962536 | Msa0562280:intron | 30.0% | |
| ATGTTCAAGTCATGTCTTAA+GGG | + | chr4_1:61962518-61962537 | Msa0562280:intron | 30.0% | |
| CTAAATATTACGTGCATGTT+TGG | - | chr4_1:61962988-61963007 | None:intergenic | 30.0% | |
| CCATAATCCAATTAGAGAAA+AGG | - | chr4_1:61963113-61963132 | None:intergenic | 30.0% | |
| ! | CCTTTTCTCTAATTGGATTA+TGG | + | chr4_1:61963110-61963129 | Msa0562280:intron | 30.0% |
| ! | ATTCTGCTGTAAAATTTTGC+CGG | + | chr4_1:61963332-61963351 | Msa0562280:intron | 30.0% |
| TATATTAAGTCAACAAGGGT+CGG | + | chr4_1:61963517-61963536 | Msa0562280:intron | 30.0% | |
| ATAGAAAATAAATCCGTGCA+TGG | + | chr4_1:61963868-61963887 | Msa0562280:intron | 30.0% | |
| ! | AGCTCAAAGGAAAAGTTTTA+TGG | + | chr4_1:61964000-61964019 | Msa0562280:intron | 30.0% |
| TTAAAACATACGGTGAAAGA+AGG | - | chr4_1:61964051-61964070 | None:intergenic | 30.0% | |
| ! | CTACTATTTTCATAAGAACC+TGG | + | chr4_1:61964072-61964091 | Msa0562280:intron | 30.0% |
| ! | TATTTTCATAAGAACCTGGT+GGG | + | chr4_1:61964076-61964095 | Msa0562280:intron | 30.0% |
| ATCTATCAAATGGGGAATTT+GGG | - | chr4_1:61964176-61964195 | None:intergenic | 30.0% | |
| ATTAAGCCATCTATCAAATG+GGG | - | chr4_1:61964184-61964203 | None:intergenic | 30.0% | |
| CAATTAAGCCATCTATCAAA+TGG | - | chr4_1:61964186-61964205 | None:intergenic | 30.0% | |
| GAATCATTTCCCTATGTCAT+AGG | + | chr4_1:61961770-61961789 | Msa0562280:intron | 35.0% | |
| TGTGCTTTACCTATGACATA+GGG | - | chr4_1:61961782-61961801 | None:intergenic | 35.0% | |
| ATGTGCTTTACCTATGACAT+AGG | - | chr4_1:61961783-61961802 | None:intergenic | 35.0% | |
| !!! | CTTTTGAAGTGAACAGCAAT+TGG | + | chr4_1:61961953-61961972 | Msa0562280:intron | 35.0% |
| ! | ACTCTAGAAATGAACCATTG+TGG | - | chr4_1:61962074-61962093 | None:intergenic | 35.0% |
| ! | AAACATACTGCCAAAAGTGT+AGG | - | chr4_1:61962176-61962195 | None:intergenic | 35.0% |
| !! | TTCTCTTAAAGTTTTGTCCG+TGG | + | chr4_1:61962291-61962310 | Msa0562280:intron | 35.0% |
| !! | ACTAGTTGGTCTTTCTTCTT+TGG | - | chr4_1:61962390-61962409 | None:intergenic | 35.0% |
| !!! | AGAAAGACCAACTAGTTTTC+TGG | + | chr4_1:61962394-61962413 | Msa0562280:intron | 35.0% |
| AATCAGACCAGAAAACTAGT+TGG | - | chr4_1:61962404-61962423 | None:intergenic | 35.0% | |
| AAGAGTAGGAAGGAAAGAAT+TGG | + | chr4_1:61962594-61962613 | Msa0562280:intron | 35.0% | |
| AAGAATTGGAATACATGCCA+TGG | + | chr4_1:61962608-61962627 | Msa0562280:intron | 35.0% | |
| ACCAAACATAGGCTATGAAA+GGG | - | chr4_1:61962747-61962766 | None:intergenic | 35.0% | |
| AACCAAACATAGGCTATGAA+AGG | - | chr4_1:61962748-61962767 | None:intergenic | 35.0% | |
| CCAAACATAGAACCAAACAT+AGG | - | chr4_1:61962758-61962777 | None:intergenic | 35.0% | |
| !! | CCTATGTTTGGTTCTATGTT+TGG | + | chr4_1:61962755-61962774 | Msa0562280:intron | 35.0% |
| TCAGTGTTCCATTACTTGTA+TGG | + | chr4_1:61963082-61963101 | Msa0562280:intron | 35.0% | |
| ! | CGGAGATCCTAATATTTTAC+CGG | - | chr4_1:61963354-61963373 | None:intergenic | 35.0% |
| GGTGGAAACAAACTTATTCA+TGG | - | chr4_1:61963780-61963799 | None:intergenic | 35.0% | |
| !! | AAATTGATTTGATTCAGCGG+TGG | - | chr4_1:61963798-61963817 | None:intergenic | 35.0% |
| TGAAGCATAATGAAGCTCAA+AGG | + | chr4_1:61963987-61964006 | Msa0562280:intron | 35.0% | |
| ! | CTATTTTCATAAGAACCTGG+TGG | + | chr4_1:61964075-61964094 | Msa0562280:intron | 35.0% |
| CGTTTATCATTTCTGCAACA+AGG | + | chr4_1:61964106-61964125 | Msa0562280:CDS | 35.0% | |
| TCTATCAAATGGGGAATTTG+GGG | - | chr4_1:61964175-61964194 | None:intergenic | 35.0% | |
| CATCTATCAAATGGGGAATT+TGG | - | chr4_1:61964177-61964196 | None:intergenic | 35.0% | |
| CAAATTCCCCATTTGATAGA+TGG | + | chr4_1:61964175-61964194 | Msa0562280:CDS | 35.0% | |
| AGCGCCTCTGTTTGAATATT+TGG | + | chr4_1:61961748-61961767 | Msa0562280:intron | 40.0% | |
| ! | AGCAATTGGTGTGCATCTTT+TGG | + | chr4_1:61961967-61961986 | Msa0562280:intron | 40.0% |
| CTAGAAATGAACCATTGTGG+TGG | - | chr4_1:61962071-61962090 | None:intergenic | 40.0% | |
| ATCGTGCATCAAAAAGTCCA+CGG | - | chr4_1:61962311-61962330 | None:intergenic | 40.0% | |
| TATCAGAGACCCAAGACTAA+CGG | - | chr4_1:61962499-61962518 | None:intergenic | 40.0% | |
| CAAGGGAAGAAATGAAGAGT+AGG | + | chr4_1:61962580-61962599 | Msa0562280:intron | 40.0% | |
| GGAAGAAATGAAGAGTAGGA+AGG | + | chr4_1:61962584-61962603 | Msa0562280:intron | 40.0% | |
| !!! | TTTCTTTTTTCGGCATGCCA+TGG | - | chr4_1:61962628-61962647 | None:intergenic | 40.0% |
| GAGCAAACTATTCAGCACAA+GGG | - | chr4_1:61962662-61962681 | None:intergenic | 40.0% | |
| TGAGCAAACTATTCAGCACA+AGG | - | chr4_1:61962663-61962682 | None:intergenic | 40.0% | |
| CAAACATAGGCTATGAAAGG+GGG | - | chr4_1:61962745-61962764 | None:intergenic | 40.0% | |
| CCAAACATAGGCTATGAAAG+GGG | - | chr4_1:61962746-61962765 | None:intergenic | 40.0% | |
| TAGATGGAGGGAATTCTTCA+AGG | + | chr4_1:61963174-61963193 | Msa0562280:intron | 40.0% | |
| TCTCACTTTACCTGTGCAAA+CGG | - | chr4_1:61963549-61963568 | None:intergenic | 40.0% | |
| GAAAATAAATCCGTGCATGG+TGG | + | chr4_1:61963871-61963890 | Msa0562280:intron | 40.0% | |
| ATTTAGTCATCCACCATGCA+CGG | - | chr4_1:61963884-61963903 | None:intergenic | 40.0% | |
| !! | ATAAACGTTGATTTCCCACC+AGG | - | chr4_1:61964093-61964112 | None:intergenic | 40.0% |
| !! | AAGTGCAAGTTGGTAAGAGT+TGG | - | chr4_1:61964140-61964159 | None:intergenic | 40.0% |
| CTATCAAATGGGGAATTTGG+GGG | - | chr4_1:61964174-61964193 | None:intergenic | 40.0% | |
| TCACTTTCTCTCCACCACAA+TGG | + | chr4_1:61962057-61962076 | Msa0562280:intron | 45.0% | |
| ! | GTAAACGGGACCTACACTTT+TGG | + | chr4_1:61962163-61962182 | Msa0562280:intron | 45.0% |
| ! | TGCTGTCAAACCGTTAGTCT+TGG | + | chr4_1:61962486-61962505 | Msa0562280:intron | 45.0% |
| !! | GCTGTCAAACCGTTAGTCTT+GGG | + | chr4_1:61962487-61962506 | Msa0562280:intron | 45.0% |
| CTATGAAAGGGGGTCATGAA+AGG | - | chr4_1:61962735-61962754 | None:intergenic | 45.0% | |
| CCCCTTTCATAGCCTATGTT+TGG | + | chr4_1:61962743-61962762 | Msa0562280:intron | 45.0% | |
| TACACCTCGAGAATCAATGC+TGG | - | chr4_1:61962786-61962805 | None:intergenic | 45.0% | |
| AGGGTGAGCCATACAAGTAA+TGG | - | chr4_1:61963093-61963112 | None:intergenic | 45.0% | |
| ! | GGCTCACCCTTTTCTCTAAT+TGG | + | chr4_1:61963103-61963122 | Msa0562280:intron | 45.0% |
| TACGCGTTGTTGCATGTAGA+TGG | + | chr4_1:61963158-61963177 | Msa0562280:intron | 45.0% | |
| CGTTGTTGCATGTAGATGGA+GGG | + | chr4_1:61963162-61963181 | Msa0562280:intron | 45.0% | |
| GAGACAAATGCTCAAAGCTC+AGG | + | chr4_1:61963227-61963246 | Msa0562280:CDS | 45.0% | |
| ACTTTACCTGTGCAAACGGA+AGG | - | chr4_1:61963545-61963564 | None:intergenic | 45.0% | |
| !!! | ATTTTAATTTCAAAAAATAA+AGG | + | chr4_1:61963610-61963629 | Msa0562280:intron | 5.0% |
| TGAAAGGGGGTCATGAAAGG+AGG | - | chr4_1:61962732-61962751 | None:intergenic | 50.0% | |
| GCGTTGTTGCATGTAGATGG+AGG | + | chr4_1:61963161-61963180 | Msa0562280:intron | 50.0% | |
| !! | GCAGCCAGCATTGATTCTCG+AGG | + | chr4_1:61962779-61962798 | Msa0562280:intron | 55.0% |
| TCGGTACCTTCCGTTTGCAC+AGG | + | chr4_1:61963536-61963555 | Msa0562280:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 61961675 | 61964267 | 61961675 | ID=Msa0562280;Name=Msa0562280 |
| chr4_1 | mRNA | 61961675 | 61964267 | 61961675 | ID=Msa0562280-mRNA-1;Parent=Msa0562280;Name=Msa0562280-mRNA-1;_AED=0.79;_eAED=0.79;_QI=0|0|0|0.5|1|1|4|0|96 |
| chr4_1 | exon | 61961675 | 61961682 | 61961675 | ID=Msa0562280-mRNA-1:exon:19583;Parent=Msa0562280-mRNA-1 |
| chr4_1 | exon | 61963145 | 61963151 | 61963145 | ID=Msa0562280-mRNA-1:exon:19584;Parent=Msa0562280-mRNA-1 |
| chr4_1 | exon | 61963177 | 61963272 | 61963177 | ID=Msa0562280-mRNA-1:exon:19585;Parent=Msa0562280-mRNA-1 |
| chr4_1 | exon | 61964088 | 61964267 | 61964088 | ID=Msa0562280-mRNA-1:exon:19586;Parent=Msa0562280-mRNA-1 |
| chr4_1 | CDS | 61961675 | 61961682 | 61961675 | ID=Msa0562280-mRNA-1:cds;Parent=Msa0562280-mRNA-1 |
| chr4_1 | CDS | 61963145 | 61963151 | 61963145 | ID=Msa0562280-mRNA-1:cds;Parent=Msa0562280-mRNA-1 |
| chr4_1 | CDS | 61963177 | 61963272 | 61963177 | ID=Msa0562280-mRNA-1:cds;Parent=Msa0562280-mRNA-1 |
| chr4_1 | CDS | 61964088 | 61964267 | 61964088 | ID=Msa0562280-mRNA-1:cds;Parent=Msa0562280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
