AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0899240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899240 MtrunA17_Chr6g0485101 90.923 650 41 4 1 649 66 698 0.0 1164
Msa0899240 MtrunA17_Chr8g0390701 54.545 682 218 16 1 649 66 688 0.0 620
Msa0899240 MtrunA17_Chr6g0460621 39.894 188 95 6 1 173 65 249 3.20e-29 123
Msa0899240 MtrunA17_Chr1g0148531 29.226 349 139 9 1 278 1 312 1.02e-27 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899240 AT4G13350.1 44.123 519 205 11 1 503 66 515 6.52e-107 336
Msa0899240 AT4G13350.2 44.123 519 205 11 1 503 66 515 6.52e-107 336
Msa0899240 AT4G32630.2 28.070 684 338 30 1 648 62 627 7.30e-39 152
Msa0899240 AT4G32630.6 27.965 683 339 30 1 648 62 626 1.61e-38 151
Msa0899240 AT4G32630.4 27.965 683 339 30 1 648 62 626 1.61e-38 151
Msa0899240 AT4G32630.5 27.965 683 339 30 1 648 62 626 1.61e-38 151
Msa0899240 AT4G32630.3 27.965 683 339 30 1 648 62 626 1.61e-38 151
Msa0899240 AT4G32630.1 27.965 683 339 30 1 648 62 626 1.61e-38 151
Msa0899240 AT1G08680.3 49.524 105 51 2 1 103 66 170 1.10e-24 109
Msa0899240 AT1G08680.1 36.515 241 132 9 1 232 66 294 1.26e-24 109
Msa0899240 AT1G08680.2 36.515 241 132 9 1 232 66 294 1.32e-24 109
Msa0899240 AT1G08680.4 49.524 105 51 2 1 103 66 170 1.48e-24 109
Msa0899240 AT1G08680.5 49.524 105 51 2 1 103 66 170 1.73e-24 108

Find 283 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGACCTGTTAGAGATATTT+TGG 0.113010 6_1:-94132953 Msa0899240:CDS
CTCTACTTGGCTTTCGTTAC+TGG 0.146357 6_1:+94132143 None:intergenic
CATACACTTGGGGCTTGATT+TGG 0.188678 6_1:+94130831 None:intergenic
ATACACTTGGGGCTTGATTT+GGG 0.205821 6_1:+94130832 None:intergenic
TTCTGAGTTGTACTCTTTCA+TGG 0.216526 6_1:-94129306 Msa0899240:three_prime_UTR
ATGACAGTATATATTAGTTT+TGG 0.226695 6_1:-94129194 None:intergenic
CAGGAGAGTTGAGGCATATC+AGG 0.233416 6_1:-94133229 Msa0899240:CDS
AATATGTGTGCACAAATTTC+TGG 0.267779 6_1:-94134402 Msa0899240:five_prime_UTR
GGAGTGGTTCCCGGCCTATC+AGG 0.277885 6_1:+94129752 None:intergenic
CCAGCAGCAGCTCCTAGTTT+TGG 0.290873 6_1:-94131776 Msa0899240:CDS
CTCTGGCTTGGAGGGTGCAT+TGG 0.292668 6_1:+94130519 None:intergenic
TACTTTCCTGCTCCAGTTCA+AGG 0.301141 6_1:-94131202 Msa0899240:CDS
CCACCCCTGCCATCCTTTCA+AGG 0.302420 6_1:-94130408 Msa0899240:CDS
CCGAATGGATTCCCTCCTTT+GGG 0.307754 6_1:+94129713 None:intergenic
TTAGAGCTGGGAGTGGTTCC+CGG 0.312806 6_1:+94129743 None:intergenic
CTATCAGGCAGCTGCTGATT+TGG 0.325530 6_1:+94129767 None:intergenic
GAGAAAATGTAATACCTCTT+AGG 0.336552 6_1:-94132930 Msa0899240:CDS
CCCGAATGGATTCCCTCCTT+TGG 0.337927 6_1:+94129712 None:intergenic
AGGCAAGGAGTTGGGAATTT+CGG 0.339840 6_1:-94129821 Msa0899240:CDS
AGTATCAGATGGAGATTATA+AGG 0.353912 6_1:-94133034 Msa0899240:CDS
TCTCCCAAAATATCTCTAAC+AGG 0.355400 6_1:+94132949 None:intergenic
TTGGTGCCAGTAATGTTAAC+AGG 0.360040 6_1:-94133522 Msa0899240:intron
ACTGTTGGAGCAACAGGTTC+AGG 0.363404 6_1:+94132075 None:intergenic
GGATTTGTGATGACCGGCTC+TGG 0.363823 6_1:-94129558 Msa0899240:three_prime_UTR
GCCCAGGTCTCTAGCTCGTT+CGG 0.369926 6_1:+94132996 None:intergenic
TTTGGGGAAGGGGTTAGAGC+TGG 0.369937 6_1:+94129730 None:intergenic
TGAGGAACTGTTGGAGCAAC+AGG 0.372048 6_1:+94132069 None:intergenic
CTGCCTAATGTACCACCTTC+AGG 0.373574 6_1:-94130381 Msa0899240:CDS
GGATTTCCTGACTGCAAAAC+AGG 0.377480 6_1:+94132021 None:intergenic
GAAATCCCAGTGATGACAAT+TGG 0.385158 6_1:-94132005 Msa0899240:CDS
CTAGGAGCTGCTGCTGGAAT+AGG 0.389666 6_1:+94131782 None:intergenic
TCTGGCTTGGAGGGTGCATT+GGG 0.389848 6_1:+94130520 None:intergenic
GGGAGTGATGGTGGTACATT+AGG 0.391076 6_1:+94130540 None:intergenic
CAAATCAGCAGCTGCCTGAT+AGG 0.391546 6_1:-94129766 Msa0899240:CDS
AAGATTCCGACACGGACAAT+TGG 0.392823 6_1:+94131905 None:intergenic
CCCATTTGCCAACCTTGAAC+TGG 0.394548 6_1:+94131190 None:intergenic
GATCAAGAAAGTAGGCAATA+TGG 0.399904 6_1:-94133120 Msa0899240:CDS
GTTTGTTAAGCATGTTTATG+AGG 0.401277 6_1:-94133491 Msa0899240:CDS
CATTGTCCTACATTATTATG+AGG 0.408827 6_1:+94131704 None:intergenic
AACCGTGCAGTCTTCAACCC+TGG 0.409273 6_1:-94130454 Msa0899240:CDS
ACAATATACTATCTTGGATA+AGG 0.410533 6_1:-94129479 Msa0899240:three_prime_UTR
CCTTCCATGTCTTCCTTGCA+CGG 0.412348 6_1:-94130570 Msa0899240:CDS
AGATAGAGAGATTGAATGAA+GGG 0.413186 6_1:-94129433 Msa0899240:three_prime_UTR
GATCGGCATCAAAATCAATA+AGG 0.413195 6_1:+94132097 None:intergenic
TTGAGGCACACTAGATTGTT+GGG 0.413764 6_1:+94132044 None:intergenic
TGTAAACTGTTTATTCCTAT+AGG 0.414631 6_1:-94129510 Msa0899240:three_prime_UTR
CCCAGGTCTCTAGCTCGTTC+GGG 0.418011 6_1:+94132997 None:intergenic
CCAAAGGAGGGAATCCATTC+GGG 0.420807 6_1:-94129712 Msa0899240:CDS
GTACAAACACATGTAAGTTT+CGG 0.424020 6_1:-94129622 Msa0899240:three_prime_UTR
TGTGTATCACCTTGGACTCC+TGG 0.424442 6_1:+94131868 None:intergenic
CCAGTTCAAGGTTGGCAAAT+GGG 0.424788 6_1:-94131190 Msa0899240:CDS
GGATTCCCTCCTTTGGGGAA+GGG 0.425243 6_1:+94129719 None:intergenic
GACACACAGGAACGTCGTTA+TGG 0.426530 6_1:-94133180 Msa0899240:CDS
GTCCTCCAGTTGTCAATGAT+TGG 0.426864 6_1:-94133074 Msa0899240:CDS
GCAAGTACTTACCTGCTGTC+AGG 0.428298 6_1:+94133603 None:intergenic
GTTGAGGCACACTAGATTGT+TGG 0.430065 6_1:+94132043 None:intergenic
ATGCCTGAAGGTGGTACATT+AGG 0.431901 6_1:+94130378 None:intergenic
CAATATACTATCTTGGATAA+GGG 0.431965 6_1:-94129478 Msa0899240:three_prime_UTR
CCCAAAGGAGGGAATCCATT+CGG 0.433525 6_1:-94129713 Msa0899240:CDS
TTGGCAAATGGGTCCTCCGC+AGG 0.434161 6_1:-94131179 Msa0899240:CDS
CTGTTAAAAGCCTCATTAGC+AGG 0.435777 6_1:+94131407 None:intergenic
TTGGGGAAGGGGTTAGAGCT+GGG 0.436834 6_1:+94129731 None:intergenic
CTACTTTCTTGATCATATCC+AGG 0.438353 6_1:+94133129 None:intergenic
GATTCCCTCCTTTGGGGAAG+GGG 0.439278 6_1:+94129720 None:intergenic
TAGATAGAGAGATTGAATGA+AGG 0.439631 6_1:-94129434 Msa0899240:three_prime_UTR
GGAACTGAGGGAAACATGTT+CGG 0.441681 6_1:-94129800 Msa0899240:CDS
GTTTCGGTTTCTATTGTTTG+TGG 0.443066 6_1:-94129606 Msa0899240:three_prime_UTR
AAGACGATTCCTATGAAAAC+AGG 0.449938 6_1:-94133248 Msa0899240:CDS
AGAAGCCCAATTGTCATCAC+TGG 0.452119 6_1:+94131999 None:intergenic
GGAGGGTGCATTGGGAGTGA+TGG 0.452418 6_1:+94130528 None:intergenic
GCATGTGGCATTGGTGCATT+CGG 0.453125 6_1:+94131449 None:intergenic
GTAATACCTCTTAGGATAAG+TGG 0.454550 6_1:-94132922 Msa0899240:CDS
GGAAGTTCTGTTCTTCCACT+TGG 0.456507 6_1:+94131350 None:intergenic
TGACGATGGGGTTGGAGTCC+AGG 0.457193 6_1:+94130320 None:intergenic
TGCAATGAACTGCTCTGGCT+TGG 0.457749 6_1:+94130507 None:intergenic
TATGAGGATAGGAGATTCAC+TGG 0.458069 6_1:-94133475 Msa0899240:CDS
TCCAGTTCAAGGTTGGCAAA+TGG 0.459544 6_1:-94131191 Msa0899240:CDS
AATGAACTGCTCTGGCTTGG+AGG 0.462667 6_1:+94130510 None:intergenic
ATAGGAGATTCACTGGAGAT+AGG 0.463488 6_1:-94133468 Msa0899240:CDS
TACACTTGGGGCTTGATTTG+GGG 0.463639 6_1:+94130833 None:intergenic
TGCCAACCTTGAACTGGAGC+AGG 0.464842 6_1:+94131196 None:intergenic
GGATTTAAATTTGAGGTGCT+TGG 0.465186 6_1:+94131946 None:intergenic
TGGATTCCCTCCTTTGGGGA+AGG 0.465352 6_1:+94129718 None:intergenic
TCATAATAATGTAGGACAAT+GGG 0.466865 6_1:-94131702 Msa0899240:CDS
CAATGTGCAGGCAAGGAGTT+GGG 0.467253 6_1:-94129829 Msa0899240:intron
GTTGGAGTCCAGGCATGGGA+TGG 0.467652 6_1:+94130330 None:intergenic
CGACGCCAATCATTGACAAC+TGG 0.467673 6_1:+94133069 None:intergenic
TAGGCAATCCATCCCATGCC+TGG 0.469752 6_1:-94130338 Msa0899240:CDS
TCAGCAGCTGCCTGATAGGC+CGG 0.471517 6_1:-94129762 Msa0899240:CDS
AGATTCCGACACGGACAATT+GGG 0.472985 6_1:+94131906 None:intergenic
GGGGAGACAATATACTATCT+TGG 0.475390 6_1:-94129485 Msa0899240:three_prime_UTR
CGGTTTCTATTGTTTGTGGA+TGG 0.479058 6_1:-94129602 Msa0899240:three_prime_UTR
ACTTCAAGAAGGAGGAAATC+AGG 0.479603 6_1:-94133778 Msa0899240:intron
TTCAAGCGGATTTAAATTTG+AGG 0.480362 6_1:+94131939 None:intergenic
TGATGGTATGCATGTGGCAT+TGG 0.480583 6_1:+94131440 None:intergenic
GCCACATTATTATATTGCAT+TGG 0.481046 6_1:+94131151 None:intergenic
GAAGGGGTTAGAGCTGGGAG+TGG 0.481281 6_1:+94129736 None:intergenic
TCTTGGATAAGGGGAGTTTG+AGG 0.483587 6_1:-94129468 Msa0899240:three_prime_UTR
ATGAACTGCTCTGGCTTGGA+GGG 0.485297 6_1:+94130511 None:intergenic
AATGGATTTGTTGACCTTGA+CGG 0.485427 6_1:+94130876 None:intergenic
ACCTTCTGTACCCACAGGAC+AGG 0.486237 6_1:-94131477 Msa0899240:CDS
ATGCATGCAATGAACTGCTC+TGG 0.489391 6_1:+94130502 None:intergenic
AACTGCATCCTCTGGCAGCT+TGG 0.489875 6_1:-94132169 Msa0899240:CDS
CTGAAGGTGGTACATTAGGC+AGG 0.490324 6_1:+94130382 None:intergenic
ATTGACAACTGGAGGACGAC+CGG 0.490377 6_1:+94133080 None:intergenic
TCTTTACCTTCTCATGCTCC+AGG 0.491077 6_1:-94131886 Msa0899240:CDS
TACATTATTATGAGGTGATA+CGG 0.491099 6_1:+94131712 None:intergenic
GGGTGGTGCTGTAAATAGTC+AGG 0.491868 6_1:-94131615 Msa0899240:intron
TCTCAAGTTTAATCTCTACT+TGG 0.492012 6_1:+94132130 None:intergenic
TGCCTCAAAGCCTGCTAATG+AGG 0.492851 6_1:-94131417 Msa0899240:CDS
TCACACGATGTGTAAATTCA+CGG 0.492952 6_1:+94133844 None:intergenic
GTCATACGCTGGGCAGCAAA+TGG 0.493340 6_1:-94130182 Msa0899240:CDS
AAATCCCAGTGATGACAATT+GGG 0.494998 6_1:-94132004 Msa0899240:CDS
AGAGAAATTTACCTTGGCAT+TGG 0.497729 6_1:+94130148 None:intergenic
AACTGTTTATTCCTATAGGA+GGG 0.499191 6_1:-94129506 Msa0899240:three_prime_UTR
AGCCTCATTAGCAGGCTTTG+AGG 0.499841 6_1:+94131415 None:intergenic
TCCTGTGTGTCTTCGTATGG+AGG 0.503139 6_1:+94133192 None:intergenic
TTAAGCATGTTTATGAGGAT+AGG 0.505517 6_1:-94133486 Msa0899240:CDS
AATCTACTGTTACAAATACA+TGG 0.505680 6_1:+94129360 None:intergenic
AATTGTTGACTAGCAGAAGC+AGG 0.505821 6_1:+94131650 None:intergenic
TGTTGGGCTTGAGGAACTGT+TGG 0.505985 6_1:+94132060 None:intergenic
CCTTGAAAGGATGGCAGGGG+TGG 0.506197 6_1:+94130408 None:intergenic
TCGTGTGAAATCAGTTTCAA+TGG 0.506647 6_1:-94133829 Msa0899240:exon
CCAAAACTAGGAGCTGCTGC+TGG 0.507856 6_1:+94131776 None:intergenic
TGGTTGCGGATGCTGCAAAC+TGG 0.508220 6_1:+94131679 None:intergenic
TGGGATGGATTGCCTAGGTT+CGG 0.509902 6_1:+94130345 None:intergenic
AGTCCAGGTGGAAGAAGTCC+TGG 0.510458 6_1:-94133147 Msa0899240:CDS
CAAGTACTTACCTGCTGTCA+GGG 0.511056 6_1:+94133604 None:intergenic
AAATTTGTGCACACATATTG+TGG 0.512763 6_1:+94134406 None:intergenic
TACTTTCAGGGTCATACGCT+GGG 0.514743 6_1:-94130192 Msa0899240:intron
TCAATGTGCAGGCAAGGAGT+TGG 0.515383 6_1:-94129830 Msa0899240:intron
ATGGGGTTGGAGTCCAGGCA+TGG 0.516624 6_1:+94130325 None:intergenic
AAACTGTTTATTCCTATAGG+AGG 0.519443 6_1:-94129507 Msa0899240:three_prime_UTR
CGTTCCTGTGTGTCTTCGTA+TGG 0.519529 6_1:+94133189 None:intergenic
TTTGTTTGCACTAATTGTAG+TGG 0.521154 6_1:-94134376 Msa0899240:five_prime_UTR
GATGGATTGCCTAGGTTCGG+AGG 0.521926 6_1:+94130348 None:intergenic
TGGGGTTGGAGTCCAGGCAT+GGG 0.524458 6_1:+94130326 None:intergenic
GGGAACCTTGAAAGGATGGC+AGG 0.524803 6_1:+94130403 None:intergenic
CGCACCGTGCAAGGAAGACA+TGG 0.526086 6_1:+94130566 None:intergenic
ACACTAGATTGTTGGGCTTG+AGG 0.528428 6_1:+94132051 None:intergenic
TAATAAGAAACAACGACTGA+AGG 0.528841 6_1:+94129398 None:intergenic
TCCTCTCGGTGGTTTGTCAG+AGG 0.529596 6_1:+94133444 None:intergenic
TGTTTACTGCTGACATCGAA+TGG 0.529956 6_1:+94130858 None:intergenic
TTTCAGAGAACTGCATCCTC+TGG 0.530588 6_1:-94132177 Msa0899240:intron
GGGTGCATTGGGAGTGATGG+TGG 0.532284 6_1:+94130531 None:intergenic
GGTTTAACTTCTACAGCAGA+AGG 0.534195 6_1:+94131371 None:intergenic
TAGCAGGCTTTGAGGCATGA+TGG 0.534756 6_1:+94131423 None:intergenic
AGGGGTGGAGTCCATGCATG+TGG 0.538337 6_1:+94130423 None:intergenic
CCTTCTGTACCCACAGGACA+GGG 0.538600 6_1:-94131476 Msa0899240:CDS
TTCCTGCTCCAGTTCAAGGT+TGG 0.540598 6_1:-94131198 Msa0899240:CDS
GGCGATTATAAGAGAAGTCC+CGG 0.541192 6_1:-94133099 Msa0899240:CDS
GGATGGCACTGAAGTGCCAC+TGG 0.541437 6_1:+94131733 None:intergenic
ATTAGGCAGGGAACCTTGAA+AGG 0.541766 6_1:+94130395 None:intergenic
CAGCAGCTGCCTGATAGGCC+GGG 0.542449 6_1:-94129761 Msa0899240:CDS
AGGAACGTCGTTATGGTGAC+AGG 0.542766 6_1:-94133173 Msa0899240:CDS
CTGTTTATTCCTATAGGAGG+GGG 0.543235 6_1:-94129504 Msa0899240:three_prime_UTR
GAAGCAGGGAACGTTGGTTG+CGG 0.544995 6_1:+94131665 None:intergenic
GTTGGGAATTTCGGAACTGA+GGG 0.545099 6_1:-94129812 Msa0899240:CDS
CGGGTGGGCTTGAAGAGCCC+AGG 0.546386 6_1:+94132980 None:intergenic
GGCAGGGAACCTTGAAAGGA+TGG 0.546497 6_1:+94130399 None:intergenic
TAACAGTAGATTGAGAGTAA+TGG 0.546744 6_1:-94129349 Msa0899240:three_prime_UTR
CCTGACTGCAAAACAGGTTG+AGG 0.547283 6_1:+94132027 None:intergenic
AATTCTTTACATTACCCGAA+TGG 0.547762 6_1:+94129698 None:intergenic
GATAGAGAGATTGAATGAAG+GGG 0.547981 6_1:-94129432 Msa0899240:three_prime_UTR
CTTGACGGCTGTGAATAACT+TGG 0.548241 6_1:+94130891 None:intergenic
ACCGTGCAGTCTTCAACCCT+GGG 0.549066 6_1:-94130453 Msa0899240:CDS
AATGAAGGATTTGTGATGAC+CGG 0.549674 6_1:-94129564 Msa0899240:three_prime_UTR
AGAGCAGTTCATTGCATGCA+TGG 0.549789 6_1:-94130500 Msa0899240:CDS
TCTCATGCTCCAGGAGTCCA+AGG 0.550042 6_1:-94131877 Msa0899240:intron
GCAATTCTTTCCCTGACAGC+AGG 0.550264 6_1:-94133614 Msa0899240:intron
TGAAGACTGCACGGTTCCTA+CGG 0.553012 6_1:+94130461 None:intergenic
CTGGATATGATCAAGAAAGT+AGG 0.553339 6_1:-94133128 Msa0899240:CDS
CCTGTGTGTCTTCGTATGGA+GGG 0.554844 6_1:+94133193 None:intergenic
TTTGTCCCAATTGTCCGTGT+CGG 0.555220 6_1:-94131911 Msa0899240:CDS
GTATCACCTCATAATAATGT+AGG 0.555607 6_1:-94131710 Msa0899240:CDS
ATTCGGATGCCCCTGTCCTG+TGG 0.557545 6_1:+94131466 None:intergenic
ATTAGGCAACGCACCGTGCA+AGG 0.558361 6_1:+94130557 None:intergenic
TGGGTTATCCACCACATGCA+TGG 0.559865 6_1:-94130434 Msa0899240:CDS
CTCATAATAATGTAGGACAA+TGG 0.560712 6_1:-94131703 Msa0899240:CDS
AACTTACATGTGTTTGTACA+CGG 0.562698 6_1:+94129626 None:intergenic
TTCGGATGCCCCTGTCCTGT+GGG 0.563942 6_1:+94131467 None:intergenic
TCTCTAACAGGTCGGACCAC+GGG 0.565901 6_1:+94132961 None:intergenic
GTTCCTACGGTAGGCAGTGG+TGG 0.566137 6_1:+94130474 None:intergenic
ATAGAGAGATTGAATGAAGG+GGG 0.568072 6_1:-94129431 Msa0899240:three_prime_UTR
AAAGAAAATAATTAATGTAA+CGG 0.569355 6_1:+94134445 None:intergenic
ATGCATGTGGTGGATAACCC+AGG 0.569423 6_1:+94130436 None:intergenic
TTGACAACTGGAGGACGACC+GGG 0.570980 6_1:+94133081 None:intergenic
ATGGATTGCCTAGGTTCGGA+GGG 0.571131 6_1:+94130349 None:intergenic
AAACATGCTTAACAAACTCT+CGG 0.571606 6_1:+94133497 None:intergenic
TCTAACCCCTTCCCCAAAGG+AGG 0.572129 6_1:-94129725 Msa0899240:CDS
ATACTTTCAGGGTCATACGC+TGG 0.572536 6_1:-94130193 Msa0899240:intron
GCATATGATGACGATGGGGT+TGG 0.573061 6_1:+94130312 None:intergenic
AAGTTACAAATGCATAATGA+AGG 0.574078 6_1:-94129579 Msa0899240:three_prime_UTR
CTGTGTCAGTGATGAAGCAT+CGG 0.574879 6_1:+94132870 None:intergenic
TGGCAAATGGGTCCTCCGCA+GGG 0.576406 6_1:-94131178 Msa0899240:CDS
GGGCTCTTCAAGCCCACCCG+TGG 0.576424 6_1:-94132977 Msa0899240:CDS
GATTTGTGATGACCGGCTCT+GGG 0.577411 6_1:-94129557 Msa0899240:three_prime_UTR
AATATACTATCTTGGATAAG+GGG 0.577936 6_1:-94129477 Msa0899240:three_prime_UTR
TCAACAATTTCCACCGTCAG+TGG 0.578286 6_1:-94131636 Msa0899240:CDS
GCTGAGAAATTGCCAAAACT+AGG 0.579045 6_1:+94131764 None:intergenic
AGGAGAGTTGAGGCATATCA+GGG 0.582512 6_1:-94133228 Msa0899240:CDS
ATTACGCACCCTCCGAACCT+AGG 0.582738 6_1:-94130357 Msa0899240:CDS
AATCTCCATCTGATACTCTA+CGG 0.582978 6_1:+94133040 None:intergenic
GAACTGGAGCAGGAAAGTAC+TGG 0.583420 6_1:+94131206 None:intergenic
ATTTCCTCCTTCTTGAAGTG+CGG 0.583644 6_1:+94133782 None:intergenic
AGGCATGGGATGGATTGCCT+AGG 0.584344 6_1:+94130340 None:intergenic
ACGGTTCCTACGGTAGGCAG+TGG 0.584624 6_1:+94130471 None:intergenic
CTGATGCATATGATGACGAT+GGG 0.584853 6_1:+94130307 None:intergenic
ACTGTTTATTCCTATAGGAG+GGG 0.584994 6_1:-94129505 Msa0899240:three_prime_UTR
ATCTCTAACAGGTCGGACCA+CGG 0.585179 6_1:+94132960 None:intergenic
TTTCCGCTGTTTGGTTTGGG+GGG 0.588613 6_1:+94132898 None:intergenic
GAAGACCGTAGAGTATCAGA+TGG 0.589229 6_1:-94133045 Msa0899240:CDS
CGCCAATCATTGACAACTGG+AGG 0.591446 6_1:+94133072 None:intergenic
GGCTGTGAATAACTTGGCAC+AGG 0.592606 6_1:+94130897 None:intergenic
AATAAGAAACAACGACTGAA+GGG 0.593061 6_1:+94129399 None:intergenic
CGAATGGATTCCCTCCTTTG+GGG 0.593184 6_1:+94129714 None:intergenic
TGGACTCCTGGAGCATGAGA+AGG 0.593576 6_1:+94131880 None:intergenic
GGAACCTTGAAAGGATGGCA+GGG 0.595041 6_1:+94130404 None:intergenic
GGCACTGAAGTGCCACTGGG+TGG 0.595804 6_1:+94131737 None:intergenic
CCCGAACGAGCTAGAGACCT+GGG 0.598543 6_1:-94132997 Msa0899240:CDS
AGCTCTAACCCCTTCCCCAA+AGG 0.598694 6_1:-94129728 Msa0899240:CDS
TATGGTGACAGGTCTAGTCC+AGG 0.598747 6_1:-94133162 Msa0899240:CDS
GCTGTAGAAGTTAAACCAAG+TGG 0.599496 6_1:-94131365 Msa0899240:CDS
TCCAATGCAATATAATAATG+TGG 0.602071 6_1:-94131152 Msa0899240:CDS
GGTGGAGTCCATGCATGTGG+TGG 0.602942 6_1:+94130426 None:intergenic
TAACAGGTCGGACCACGGGT+GGG 0.604829 6_1:+94132965 None:intergenic
AATCTTACGACCTTTCCTCT+CGG 0.609041 6_1:+94133430 None:intergenic
GGAGGGTGCGTAATGCCTGA+AGG 0.609235 6_1:+94130366 None:intergenic
TCCCGAACGAGCTAGAGACC+TGG 0.613069 6_1:-94132998 Msa0899240:CDS
TATCCAGGACTTCTTCCACC+TGG 0.614393 6_1:+94133144 None:intergenic
ATCTACTGTTACAAATACAT+GGG 0.614768 6_1:+94129361 None:intergenic
TGCATTGGAAAGCCCTGCGG+AGG 0.614805 6_1:+94131166 None:intergenic
GTAATGTAAAGAATTATCCA+TGG 0.614944 6_1:-94129690 Msa0899240:exon
CTAACAGGTCGGACCACGGG+TGG 0.615242 6_1:+94132964 None:intergenic
GAAGTTACCGCACTTCAAGA+AGG 0.615478 6_1:-94133789 Msa0899240:CDS
CCAAAATATCTCTAACAGGT+CGG 0.617155 6_1:+94132953 None:intergenic
TTCTCAGCTTTCCCACCCAG+TGG 0.617961 6_1:-94131749 Msa0899240:CDS
CGATGCTTCATCACTGACAC+AGG 0.618098 6_1:-94132869 Msa0899240:intron
CTAGCAGAAGCAGGGAACGT+TGG 0.618799 6_1:+94131659 None:intergenic
AGTTGGGAATTTCGGAACTG+AGG 0.619777 6_1:-94129813 Msa0899240:CDS
CTTACGACCTTTCCTCTCGG+TGG 0.622626 6_1:+94133433 None:intergenic
TGGAGCAACAGGTTCAGGAT+CGG 0.626425 6_1:+94132080 None:intergenic
TGACAAACCACCGAGAGGAA+AGG 0.627098 6_1:-94133440 Msa0899240:intron
GAAGCCCAATTGTCATCACT+GGG 0.627573 6_1:+94132000 None:intergenic
CATGCACCTTCTGTACCCAC+AGG 0.628811 6_1:-94131482 Msa0899240:CDS
CAAGTTATTCACAGCCGTCA+AGG 0.628835 6_1:-94130890 Msa0899240:CDS
CAACAATTTCCACCGTCAGT+GGG 0.629584 6_1:-94131635 Msa0899240:CDS
TCATATGCATCAGTCCCACC+AGG 0.629975 6_1:-94130297 Msa0899240:intron
CTAACCCCTTCCCCAAAGGA+GGG 0.631904 6_1:-94129724 Msa0899240:CDS
CAACTAATATACCAATGCCA+AGG 0.633465 6_1:-94130159 Msa0899240:intron
ATCAGATGGAGATTATAAGG+TGG 0.635684 6_1:-94133031 Msa0899240:CDS
TGAAGGTGGTACATTAGGCA+GGG 0.636868 6_1:+94130383 None:intergenic
CTATGAAAACAGGAGAGTTG+AGG 0.640259 6_1:-94133238 Msa0899240:CDS
GAACCTTGAAAGGATGGCAG+GGG 0.640950 6_1:+94130405 None:intergenic
TGGGACAAAACAGATTCAAG+CGG 0.641329 6_1:+94131925 None:intergenic
CCCTCCATACGAAGACACAC+AGG 0.642212 6_1:-94133193 Msa0899240:CDS
ACCCAGGGTTGAAGACTGCA+CGG 0.643062 6_1:+94130452 None:intergenic
TTGAAAGTCACATACACTTG+GGG 0.645670 6_1:+94130821 None:intergenic
CAATTTCCACCGTCAGTGGG+TGG 0.648109 6_1:-94131632 Msa0899240:CDS
CCGTGCAAGGAAGACATGGA+AGG 0.650622 6_1:+94130570 None:intergenic
TTATTATGAGGTGATACGGA+TGG 0.654263 6_1:+94131716 None:intergenic
ATTGTTGACTAGCAGAAGCA+GGG 0.663307 6_1:+94131651 None:intergenic
ACAGGATAAACATACCTGGT+GGG 0.664986 6_1:+94130283 None:intergenic
GGTACAGAAGGTGCATGCAA+TGG 0.666830 6_1:+94131488 None:intergenic
ACTGGATACCAAGCTGCCAG+AGG 0.668169 6_1:+94132161 None:intergenic
GTTACCGCACTTCAAGAAGG+AGG 0.668810 6_1:-94133786 Msa0899240:CDS
TTTACAGCACCACCCACTGA+CGG 0.672082 6_1:+94131623 None:intergenic
AATCCACCACTGCCTACCGT+AGG 0.677678 6_1:-94130477 Msa0899240:CDS
GGTGACAGGTCTAGTCCAGG+TGG 0.685795 6_1:-94133159 Msa0899240:CDS
GATGGCACTGAAGTGCCACT+GGG 0.689606 6_1:+94131734 None:intergenic
ACAGCACCACCCACTGACGG+TGG 0.689920 6_1:+94131626 None:intergenic
AATGCAATATAATAATGTGG+CGG 0.690651 6_1:-94131149 Msa0899240:intron
GCACTGAAGTGCCACTGGGT+GGG 0.693382 6_1:+94131738 None:intergenic
ACTGATGCATATGATGACGA+TGG 0.699854 6_1:+94130306 None:intergenic
TATTGCATTGGAAAGCCCTG+CGG 0.701173 6_1:+94131163 None:intergenic
TGCATGTGGTGGATAACCCA+GGG 0.705185 6_1:+94130437 None:intergenic
ACCTCTGACAAACCACCGAG+AGG 0.706606 6_1:-94133445 Msa0899240:CDS
GAGGCATGATGGTATGCATG+TGG 0.707104 6_1:+94131434 None:intergenic
CTTCTGTACCCACAGGACAG+GGG 0.715786 6_1:-94131475 Msa0899240:CDS
TGTTTGTACACGGTGCAACA+CGG 0.717368 6_1:+94129636 None:intergenic
AGAGTTGAGGCATATCAGGG+AGG 0.741370 6_1:-94133225 Msa0899240:CDS
AGAAGGTAAAGATTCCGACA+CGG 0.756226 6_1:+94131897 None:intergenic
TGATGCATATGATGACGATG+GGG 0.769784 6_1:+94130308 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAATAATTAATGTAA+CGG + chr6_1:94129219-94129238 None:intergenic 10.0%
!!! AACTTTTTATTAAATAGAAT+AGG + chr6_1:94130969-94130988 None:intergenic 10.0%
!! ATTAAACAGTAAATTAAAAA+CGG + chr6_1:94131292-94131311 None:intergenic 10.0%
!!! TTGTTTCTTATTAAATTTTT+GGG - chr6_1:94134273-94134292 Msa0899240:intron 10.0%
!!! ATTTTCTTTTATACTTTTGA+AGG - chr6_1:94129230-94129249 Msa0899240:three_prime_UTR 15.0%
!!! TTTTCTTTTATACTTTTGAA+GGG - chr6_1:94129231-94129250 Msa0899240:three_prime_UTR 15.0%
!!! AAGAGATTTATTTTAAAGAA+TGG - chr6_1:94130014-94130033 Msa0899240:intron 15.0%
!!! AGAGATTTATTTTAAAGAAT+GGG - chr6_1:94130015-94130034 Msa0899240:intron 15.0%
!! TTATGATTAATAATCATAGA+GGG - chr6_1:94132617-94132636 Msa0899240:intron 15.0%
!!! TTGTGTTTTATATGAATAAA+GGG + chr6_1:94133682-94133701 None:intergenic 15.0%
!!! ATTGTGTTTTATATGAATAA+AGG + chr6_1:94133683-94133702 None:intergenic 15.0%
!!! TAAAATTGATGATAATAGAT+TGG - chr6_1:94133771-94133790 Msa0899240:intron 15.0%
!!! GTTGTTTCTTATTAAATTTT+TGG - chr6_1:94134272-94134291 Msa0899240:intron 15.0%
!!! TACATTTTAAAATGGCAATA+TGG + chr6_1:94130843-94130862 None:intergenic 20.0%
!! ATAAAAAGTTGAATTTCAGA+TGG - chr6_1:94130979-94130998 Msa0899240:intron 20.0%
!!! TGGGATATTTTATTTATGAA+TGG - chr6_1:94131101-94131120 Msa0899240:intron 20.0%
!! GTAAAATATTGTTTAGCTAA+TGG - chr6_1:94132090-94132109 Msa0899240:CDS 20.0%
!!! ATTATTAATCATAAGGTGTT+TGG + chr6_1:94132611-94132630 None:intergenic 20.0%
!! CTCTATGATTATTAATCATA+AGG + chr6_1:94132618-94132637 None:intergenic 20.0%
!! CTTATGATTAATAATCATAG+AGG - chr6_1:94132616-94132635 Msa0899240:intron 20.0%
!!! TAATGGTATCTTCATATTTT+TGG - chr6_1:94134329-94134348 Msa0899240:intron 20.0%
!!! ACATGATTATTTTAATGTTG+TGG - chr6_1:94134415-94134434 Msa0899240:five_prime_UTR 20.0%
!!! ATTTGTTTCTAATCCATACT+TGG - chr6_1:94129451-94129470 Msa0899240:three_prime_UTR 25.0%
!!! TTTTGTAGTGTTGTTTGTAA+TGG - chr6_1:94129562-94129581 Msa0899240:three_prime_UTR 25.0%
! AAGCAGAATGAAAAGAAATA+TGG + chr6_1:94129938-94129957 None:intergenic 25.0%
! ATCATTCTGATTGTCATATT+TGG - chr6_1:94130120-94130139 Msa0899240:intron 25.0%
! TTTCTTAAAAAAGTGAATCC+TGG + chr6_1:94130264-94130283 None:intergenic 25.0%
!!! ATAATGATAGCATTAGCTTT+TGG - chr6_1:94131081-94131100 Msa0899240:intron 25.0%
!!! TAATGATAGCATTAGCTTTT+GGG - chr6_1:94131082-94131101 Msa0899240:intron 25.0%
! TAAATAATGAATCAACCTCA+CGG + chr6_1:94131153-94131172 None:intergenic 25.0%
!!! TTATGTTTTCTTTTAAGACG+TGG - chr6_1:94131334-94131353 Msa0899240:intron 25.0%
!! CATTTGTCATTTACTTTGTT+TGG - chr6_1:94131362-94131381 Msa0899240:CDS 25.0%
! TACATTATTATGAGGTGATA+CGG + chr6_1:94131952-94131971 None:intergenic 25.0%
! TCATAATAATGTAGGACAAT+GGG - chr6_1:94131959-94131978 Msa0899240:CDS 25.0%
!! ATTTTACATGACAAGTTCAT+TGG + chr6_1:94132077-94132096 None:intergenic 25.0%
! TCCAATGCAATATAATAATG+TGG - chr6_1:94132509-94132528 Msa0899240:intron 25.0%
! AATGCAATATAATAATGTGG+CGG - chr6_1:94132512-94132531 Msa0899240:intron 25.0%
! ATGTGACTTTCAATGATTTA+TGG - chr6_1:94132850-94132869 Msa0899240:intron 25.0%
!!! TTTTTTTACATGCGATTCAT+TGG - chr6_1:94133032-94133051 Msa0899240:CDS 25.0%
! ATTAACTGACGAATATTAAC+AGG + chr6_1:94133399-94133418 None:intergenic 25.0%
! TATTACTTGTCACTAGTAAA+AGG - chr6_1:94133801-94133820 Msa0899240:CDS 25.0%
! GTAATGTAAAGAATTATCCA+TGG - chr6_1:94133971-94133990 Msa0899240:intron 25.0%
! GTTTGAATTTACAAAAACCA+TGG + chr6_1:94133991-94134010 None:intergenic 25.0%
! AAGTTACAAATGCATAATGA+AGG - chr6_1:94134082-94134101 Msa0899240:intron 25.0%
! TGTAAACTGTTTATTCCTAT+AGG - chr6_1:94134151-94134170 Msa0899240:intron 25.0%
! ACAATATACTATCTTGGATA+AGG - chr6_1:94134182-94134201 Msa0899240:intron 25.0%
! CAATATACTATCTTGGATAA+GGG - chr6_1:94134183-94134202 Msa0899240:intron 25.0%
! AATATACTATCTTGGATAAG+GGG - chr6_1:94134184-94134203 Msa0899240:intron 25.0%
! ATCTACTGTTACAAATACAT+GGG + chr6_1:94134303-94134322 None:intergenic 25.0%
! AATCTACTGTTACAAATACA+TGG + chr6_1:94134304-94134323 None:intergenic 25.0%
AAATTTGTGCACACATATTG+TGG + chr6_1:94129258-94129277 None:intergenic 30.0%
AATATGTGTGCACAAATTTC+TGG - chr6_1:94129259-94129278 Msa0899240:three_prime_UTR 30.0%
TTTGTTTGCACTAATTGTAG+TGG - chr6_1:94129285-94129304 Msa0899240:three_prime_UTR 30.0%
TGTATTCAACTCAAATCACA+GGG + chr6_1:94129368-94129387 None:intergenic 30.0%
ATGTATTCAACTCAAATCAC+AGG + chr6_1:94129369-94129388 None:intergenic 30.0%
! AATACATGTTTCAGAGTACT+TGG - chr6_1:94129382-94129401 Msa0899240:three_prime_UTR 30.0%
CAAAAAATCAGTAATACTGC+TGG + chr6_1:94129421-94129440 None:intergenic 30.0%
TCTGCAACTATACATGAAAA+CGG + chr6_1:94130088-94130107 None:intergenic 30.0%
AAACATGCTTAACAAACTCT+CGG + chr6_1:94130167-94130186 None:intergenic 30.0%
! GTTTGTTAAGCATGTTTATG+AGG - chr6_1:94130170-94130189 Msa0899240:CDS 30.0%
TTAAGCATGTTTATGAGGAT+AGG - chr6_1:94130175-94130194 Msa0899240:CDS 30.0%
TTAAAAAAGTGAATCCTGGA+GGG + chr6_1:94130260-94130279 None:intergenic 30.0%
AGAACAGACTAAGTAAGAAT+TGG + chr6_1:94130365-94130384 None:intergenic 30.0%
AGTATCAGATGGAGATTATA+AGG - chr6_1:94130627-94130646 Msa0899240:intron 30.0%
GAGAAAATGTAATACCTCTT+AGG - chr6_1:94130731-94130750 Msa0899240:intron 30.0%
! GATGTTTTCAGTTATTCCTT+TGG - chr6_1:94131234-94131253 Msa0899240:intron 30.0%
TCTCAAGTTTAATCTCTACT+TGG + chr6_1:94131534-94131553 None:intergenic 30.0%
! TTCAAGCGGATTTAAATTTG+AGG + chr6_1:94131725-94131744 None:intergenic 30.0%
TTACAATATGTGTATCACCT+TGG + chr6_1:94131804-94131823 None:intergenic 30.0%
AGGTGATACACATATTGTAA+TGG - chr6_1:94131804-94131823 Msa0899240:intron 30.0%
GTATCACCTCATAATAATGT+AGG - chr6_1:94131951-94131970 Msa0899240:CDS 30.0%
CATTGTCCTACATTATTATG+AGG + chr6_1:94131960-94131979 None:intergenic 30.0%
CTCATAATAATGTAGGACAA+TGG - chr6_1:94131958-94131977 Msa0899240:CDS 30.0%
GTATTAATTTCACTCTGTTC+TGG - chr6_1:94132137-94132156 Msa0899240:CDS 30.0%
CTAATTGTTAGCCAAACAAT+AGG + chr6_1:94132400-94132419 None:intergenic 30.0%
GCCACATTATTATATTGCAT+TGG + chr6_1:94132513-94132532 None:intergenic 30.0%
ATTGAAAGTCACATACACTT+GGG + chr6_1:94132844-94132863 None:intergenic 30.0%
AATGCAAGATGCTAACTTTA+TGG + chr6_1:94132906-94132925 None:intergenic 30.0%
! TCACAGTATATTGTTTCTCT+TGG - chr6_1:94133059-94133078 Msa0899240:CDS 30.0%
ATTAACAGGATAAACATACC+TGG + chr6_1:94133385-94133404 None:intergenic 30.0%
!! TGAAAGTATTAACATGGTTC+AGG + chr6_1:94133457-94133476 None:intergenic 30.0%
TGAACCATGTTAATACTTTC+AGG - chr6_1:94133456-94133475 Msa0899240:CDS 30.0%
GAACCATGTTAATACTTTCA+GGG - chr6_1:94133457-94133476 Msa0899240:CDS 30.0%
GATTGAAGAGAAATTTACCT+TGG + chr6_1:94133522-94133541 None:intergenic 30.0%
ATGTATGGGAAATTAGATGA+AGG + chr6_1:94133626-94133645 None:intergenic 30.0%
TAGCATGAACTTCAATGATA+CGG - chr6_1:94133652-94133671 Msa0899240:CDS 30.0%
ATCGCAATATTTCAAAAGCT+AGG + chr6_1:94133724-94133743 None:intergenic 30.0%
!!! TAGCTTTTGAAATATTGCGA+TGG - chr6_1:94133723-94133742 Msa0899240:intron 30.0%
!!! AGCTTTTGAAATATTGCGAT+GGG - chr6_1:94133724-94133743 Msa0899240:intron 30.0%
AATTCTTTACATTACCCGAA+TGG + chr6_1:94133966-94133985 None:intergenic 30.0%
AACTTACATGTGTTTGTACA+CGG + chr6_1:94134038-94134057 None:intergenic 30.0%
GTACAAACACATGTAAGTTT+CGG - chr6_1:94134039-94134058 Msa0899240:intron 30.0%
GGTCGAAGTGAAAAATATTT+CGG - chr6_1:94134125-94134144 Msa0899240:intron 30.0%
AAACTGTTTATTCCTATAGG+AGG - chr6_1:94134154-94134173 Msa0899240:intron 30.0%
AACTGTTTATTCCTATAGGA+GGG - chr6_1:94134155-94134174 Msa0899240:intron 30.0%
TAGATAGAGAGATTGAATGA+AGG - chr6_1:94134227-94134246 Msa0899240:intron 30.0%
AGATAGAGAGATTGAATGAA+GGG - chr6_1:94134228-94134247 Msa0899240:intron 30.0%
AATAAGAAACAACGACTGAA+GGG + chr6_1:94134265-94134284 None:intergenic 30.0%
TAATAAGAAACAACGACTGA+AGG + chr6_1:94134266-94134285 None:intergenic 30.0%
TAACAGTAGATTGAGAGTAA+TGG - chr6_1:94134312-94134331 Msa0899240:intron 30.0%
AACAGAAGTAAGATTTGCGT+AGG + chr6_1:94129611-94129630 None:intergenic 35.0%
TACGCAAATCTTACTTCTGT+TGG - chr6_1:94129610-94129629 Msa0899240:three_prime_UTR 35.0%
!!! CATGAGTTTTGGAGAAAAGT+GGG + chr6_1:94129777-94129796 None:intergenic 35.0%
! CACACAAAAACCATGAGTTT+TGG + chr6_1:94129788-94129807 None:intergenic 35.0%
TCACACGATGTGTAAATTCA+CGG + chr6_1:94129820-94129839 None:intergenic 35.0%
TCGTGTGAAATCAGTTTCAA+TGG - chr6_1:94129832-94129851 Msa0899240:intron 35.0%
CTTAAAAAAGTGAATCCTGG+AGG + chr6_1:94130261-94130280 None:intergenic 35.0%
AAGACGATTCCTATGAAAAC+AGG - chr6_1:94130413-94130432 Msa0899240:CDS 35.0%
CTACTTTCTTGATCATATCC+AGG + chr6_1:94130535-94130554 None:intergenic 35.0%
CTGGATATGATCAAGAAAGT+AGG - chr6_1:94130533-94130552 Msa0899240:CDS 35.0%
GATCAAGAAAGTAGGCAATA+TGG - chr6_1:94130541-94130560 Msa0899240:CDS 35.0%
AATCTCCATCTGATACTCTA+CGG + chr6_1:94130624-94130643 None:intergenic 35.0%
ATCAGATGGAGATTATAAGG+TGG - chr6_1:94130630-94130649 Msa0899240:intron 35.0%
CCAAAATATCTCTAACAGGT+CGG + chr6_1:94130711-94130730 None:intergenic 35.0%
! CGACCTGTTAGAGATATTTT+GGG - chr6_1:94130709-94130728 Msa0899240:intron 35.0%
TCTCCCAAAATATCTCTAAC+AGG + chr6_1:94130715-94130734 None:intergenic 35.0%
GTAATACCTCTTAGGATAAG+TGG - chr6_1:94130739-94130758 Msa0899240:intron 35.0%
ATAGAATAGGCCATTATGAG+TGG + chr6_1:94130956-94130975 None:intergenic 35.0%
TCACGGAAAAGATTAAGACT+CGG + chr6_1:94131136-94131155 None:intergenic 35.0%
GAAACATCTCTAATGTCCAA+AGG + chr6_1:94131253-94131272 None:intergenic 35.0%
GATCGGCATCAAAATCAATA+AGG + chr6_1:94131567-94131586 None:intergenic 35.0%
AAATCCCAGTGATGACAATT+GGG - chr6_1:94131657-94131676 Msa0899240:CDS 35.0%
!! TTCTTTTGATGTTGCTTCTG+AGG - chr6_1:94131681-94131700 Msa0899240:CDS 35.0%
! GGATTTAAATTTGAGGTGCT+TGG + chr6_1:94131718-94131737 None:intergenic 35.0%
TTATTATGAGGTGATACGGA+TGG + chr6_1:94131948-94131967 None:intergenic 35.0%
TAAGTAGTCACGATTACTTC+AGG + chr6_1:94132335-94132354 None:intergenic 35.0%
ACTTGCATATGCCTATTGTT+TGG - chr6_1:94132386-94132405 Msa0899240:intron 35.0%
GGCTAACAATTAGTTGTGAT+TGG - chr6_1:94132407-94132426 Msa0899240:intron 35.0%
ATCTGGTAAGCTAATCATTC+TGG + chr6_1:94132550-94132569 None:intergenic 35.0%
AAACGCATACTAAGACAATC+TGG + chr6_1:94132567-94132586 None:intergenic 35.0%
AGATTGTCTTAGTATGCGTT+TGG - chr6_1:94132566-94132585 Msa0899240:intron 35.0%
!! AATGGATTTGTTGACCTTGA+CGG + chr6_1:94132788-94132807 None:intergenic 35.0%
TTGAAAGTCACATACACTTG+GGG + chr6_1:94132843-94132862 None:intergenic 35.0%
CATTGAAAGTCACATACACT+TGG + chr6_1:94132845-94132864 None:intergenic 35.0%
! GTTCCAACCTTTTCAATGAT+GGG + chr6_1:94132993-94133012 None:intergenic 35.0%
! TGTTCCAACCTTTTCAATGA+TGG + chr6_1:94132994-94133013 None:intergenic 35.0%
CTGATAAAAAGCAAACGACT+AGG + chr6_1:94133431-94133450 None:intergenic 35.0%
!! TGACCCTGAAAGTATTAACA+TGG + chr6_1:94133463-94133482 None:intergenic 35.0%
CAACTAATATACCAATGCCA+AGG - chr6_1:94133502-94133521 Msa0899240:CDS 35.0%
AGAGAAATTTACCTTGGCAT+TGG + chr6_1:94133516-94133535 None:intergenic 35.0%
CTTCTTCGAAACTCGTATTT+GGG - chr6_1:94133594-94133613 Msa0899240:intron 35.0%
! AAGGTATTAACTCAATGTGC+AGG - chr6_1:94133820-94133839 Msa0899240:exon 35.0%
GTTTCGGTTTCTATTGTTTG+TGG - chr6_1:94134055-94134074 Msa0899240:intron 35.0%
AATGAAGGATTTGTGATGAC+CGG - chr6_1:94134097-94134116 Msa0899240:intron 35.0%
ACTGTTTATTCCTATAGGAG+GGG - chr6_1:94134156-94134175 Msa0899240:intron 35.0%
GATAGAGAGATTGAATGAAG+GGG - chr6_1:94134229-94134248 Msa0899240:intron 35.0%
ATAGAGAGATTGAATGAAGG+GGG - chr6_1:94134230-94134249 Msa0899240:intron 35.0%
TTCTGAGTTGTACTCTTTCA+TGG - chr6_1:94134355-94134374 Msa0899240:intron 35.0%
! ACATGTTTCAGAGTACTTGG+TGG - chr6_1:94129385-94129404 Msa0899240:three_prime_UTR 40.0%
GTAATACTGCTGGATAAAGC+AGG + chr6_1:94129411-94129430 None:intergenic 40.0%
!!! CCATGAGTTTTGGAGAAAAG+TGG + chr6_1:94129778-94129797 None:intergenic 40.0%
!! CCACTTTTCTCCAAAACTCA+TGG - chr6_1:94129775-94129794 Msa0899240:CDS 40.0%
ATTTCCTCCTTCTTGAAGTG+CGG + chr6_1:94129882-94129901 None:intergenic 40.0%
ACTTCAAGAAGGAGGAAATC+AGG - chr6_1:94129883-94129902 Msa0899240:intron 40.0%
!! TTGGTGCCAGTAATGTTAAC+AGG - chr6_1:94130139-94130158 Msa0899240:intron 40.0%
TATGAGGATAGGAGATTCAC+TGG - chr6_1:94130186-94130205 Msa0899240:CDS 40.0%
ATAGGAGATTCACTGGAGAT+AGG - chr6_1:94130193-94130212 Msa0899240:intron 40.0%
AATCTTACGACCTTTCCTCT+CGG + chr6_1:94130234-94130253 None:intergenic 40.0%
! TCTTGTGTTGTGTGTTGTTC+AGG - chr6_1:94130384-94130403 Msa0899240:CDS 40.0%
! CTTGTGTTGTGTGTTGTTCA+GGG - chr6_1:94130385-94130404 Msa0899240:CDS 40.0%
! CTCAACTCTCCTGTTTTCAT+AGG + chr6_1:94130425-94130444 None:intergenic 40.0%
CTATGAAAACAGGAGAGTTG+AGG - chr6_1:94130423-94130442 Msa0899240:CDS 40.0%
! CCGACCTGTTAGAGATATTT+TGG - chr6_1:94130708-94130727 Msa0899240:intron 40.0%
GTTCTAATACCGTGTCATGA+AGG + chr6_1:94130899-94130918 None:intergenic 40.0%
TCTGTCTTTGCCACTCATAA+TGG - chr6_1:94130943-94130962 Msa0899240:intron 40.0%
CACGGAAAAGATTAAGACTC+GGG + chr6_1:94131135-94131154 None:intergenic 40.0%
! GAGTCTTAATCTTTTCCGTG+AGG - chr6_1:94131135-94131154 Msa0899240:intron 40.0%
CAGCTTCGATCAAGAATACA+AGG + chr6_1:94131215-94131234 None:intergenic 40.0%
TTGAGGCACACTAGATTGTT+GGG + chr6_1:94131620-94131639 None:intergenic 40.0%
GAAATCCCAGTGATGACAAT+TGG - chr6_1:94131656-94131675 Msa0899240:CDS 40.0%
TGGGACAAAACAGATTCAAG+CGG + chr6_1:94131739-94131758 None:intergenic 40.0%
AGAAGGTAAAGATTCCGACA+CGG + chr6_1:94131767-94131786 None:intergenic 40.0%
! GACTCATCTGTTTTATCTGC+AGG - chr6_1:94131855-94131874 Msa0899240:intron 40.0%
GCTGAGAAATTGCCAAAACT+AGG + chr6_1:94131900-94131919 None:intergenic 40.0%
! ATTGTTGACTAGCAGAAGCA+GGG + chr6_1:94132013-94132032 None:intergenic 40.0%
! AATTGTTGACTAGCAGAAGC+AGG + chr6_1:94132014-94132033 None:intergenic 40.0%
GTGCTGTAAATAGTCAGGTT+TGG - chr6_1:94132051-94132070 Msa0899240:CDS 40.0%
CTGTTAAAAGCCTCATTAGC+AGG + chr6_1:94132257-94132276 None:intergenic 40.0%
! GGTTTAACTTCTACAGCAGA+AGG + chr6_1:94132293-94132312 None:intergenic 40.0%
GCTGTAGAAGTTAAACCAAG+TGG - chr6_1:94132296-94132315 Msa0899240:intron 40.0%
CAATTAGTTGTGATTGGTGC+AGG - chr6_1:94132413-94132432 Msa0899240:intron 40.0%
TGTTTACTGCTGACATCGAA+TGG + chr6_1:94132806-94132825 None:intergenic 40.0%
ATACACTTGGGGCTTGATTT+GGG + chr6_1:94132832-94132851 None:intergenic 40.0%
ATGCTCTCCCATCATTGAAA+AGG - chr6_1:94132983-94133002 Msa0899240:CDS 40.0%
TCTCCCATCATTGAAAAGGT+TGG - chr6_1:94132987-94133006 Msa0899240:CDS 40.0%
! TGATGCATATGATGACGATG+GGG + chr6_1:94133356-94133375 None:intergenic 40.0%
! CTGATGCATATGATGACGAT+GGG + chr6_1:94133357-94133376 None:intergenic 40.0%
! ACTGATGCATATGATGACGA+TGG + chr6_1:94133358-94133377 None:intergenic 40.0%
ACAGGATAAACATACCTGGT+GGG + chr6_1:94133381-94133400 None:intergenic 40.0%
AACAGGATAAACATACCTGG+TGG + chr6_1:94133382-94133401 None:intergenic 40.0%
TAAGCTTAAACAGCATGCAC+AGG + chr6_1:94133561-94133580 None:intergenic 40.0%
GCTTCTTCGAAACTCGTATT+TGG - chr6_1:94133593-94133612 Msa0899240:intron 40.0%
TCATGCTATGCAGCATGTAT+GGG + chr6_1:94133640-94133659 None:intergenic 40.0%
TTCATGCTATGCAGCATGTA+TGG + chr6_1:94133641-94133660 None:intergenic 40.0%
ATTAACTCAATGTGCAGGCA+AGG - chr6_1:94133825-94133844 Msa0899240:exon 40.0%
CGGTTTCTATTGTTTGTGGA+TGG - chr6_1:94134059-94134078 Msa0899240:intron 40.0%
CTGTTTATTCCTATAGGAGG+GGG - chr6_1:94134157-94134176 Msa0899240:intron 40.0%
GGGGAGACAATATACTATCT+TGG - chr6_1:94134176-94134195 Msa0899240:intron 40.0%
CATGTGCAAACTGCCAAGTA+TGG + chr6_1:94129467-94129486 None:intergenic 45.0%
AGTTTGCACATGTCTTGCTG+AGG - chr6_1:94129475-94129494 Msa0899240:three_prime_UTR 45.0%
GAGAAAAGTGGGCAGTTGAA+AGG + chr6_1:94129766-94129785 None:intergenic 45.0%
GAAGTTACCGCACTTCAAGA+AGG - chr6_1:94129872-94129891 Msa0899240:intron 45.0%
!! GGCACGAGTTTTAGCACAAA+AGG + chr6_1:94129917-94129936 None:intergenic 45.0%
CAAGTACTTACCTGCTGTCA+GGG + chr6_1:94130060-94130079 None:intergenic 45.0%
TCGGAGCCTGTTAACATTAC+TGG + chr6_1:94130148-94130167 None:intergenic 45.0%
! GTCGTAAGATTTTACCCTCC+AGG - chr6_1:94130243-94130262 Msa0899240:intron 45.0%
AGGAGAGTTGAGGCATATCA+GGG - chr6_1:94130433-94130452 Msa0899240:CDS 45.0%
GGCGATTATAAGAGAAGTCC+CGG - chr6_1:94130562-94130581 Msa0899240:CDS 45.0%
GTCCTCCAGTTGTCAATGAT+TGG - chr6_1:94130587-94130606 Msa0899240:intron 45.0%
! GAAGACCGTAGAGTATCAGA+TGG - chr6_1:94130616-94130635 Msa0899240:intron 45.0%
!!! TTTTCCGCTGTTTGGTTTGG+GGG + chr6_1:94130767-94130786 None:intergenic 45.0%
!!! CTTTTCCGCTGTTTGGTTTG+GGG + chr6_1:94130768-94130787 None:intergenic 45.0%
!! GCTTTTCCGCTGTTTGGTTT+GGG + chr6_1:94130769-94130788 None:intergenic 45.0%
! AGCTTTTCCGCTGTTTGGTT+TGG + chr6_1:94130770-94130789 None:intergenic 45.0%
CTGTGTCAGTGATGAAGCAT+CGG + chr6_1:94130794-94130813 None:intergenic 45.0%
TGTGTTCAGCCTTCATGACA+CGG - chr6_1:94130887-94130906 Msa0899240:CDS 45.0%
! CTCTCTCAAGAAGAGCATGT+CGG + chr6_1:94131034-94131053 None:intergenic 45.0%
AACTCAGCCACCTCACTAAA+GGG + chr6_1:94131421-94131440 None:intergenic 45.0%
TTTCAGAGAACTGCATCCTC+TGG - chr6_1:94131484-94131503 Msa0899240:CDS 45.0%
! CTCTACTTGGCTTTCGTTAC+TGG + chr6_1:94131521-94131540 None:intergenic 45.0%
ACACTAGATTGTTGGGCTTG+AGG + chr6_1:94131613-94131632 None:intergenic 45.0%
GTTGAGGCACACTAGATTGT+TGG + chr6_1:94131621-94131640 None:intergenic 45.0%
GGATTTCCTGACTGCAAAAC+AGG + chr6_1:94131643-94131662 None:intergenic 45.0%
GAAGCCCAATTGTCATCACT+GGG + chr6_1:94131664-94131683 None:intergenic 45.0%
AGAAGCCCAATTGTCATCAC+TGG + chr6_1:94131665-94131684 None:intergenic 45.0%
TTTGTCCCAATTGTCCGTGT+CGG - chr6_1:94131750-94131769 Msa0899240:CDS 45.0%
AGATTCCGACACGGACAATT+GGG + chr6_1:94131758-94131777 None:intergenic 45.0%
AAGATTCCGACACGGACAAT+TGG + chr6_1:94131759-94131778 None:intergenic 45.0%
TCTTTACCTTCTCATGCTCC+AGG - chr6_1:94131775-94131794 Msa0899240:CDS 45.0%
TCAACAATTTCCACCGTCAG+TGG - chr6_1:94132025-94132044 Msa0899240:CDS 45.0%
CAACAATTTCCACCGTCAGT+GGG - chr6_1:94132026-94132045 Msa0899240:CDS 45.0%
TGATGGTATGCATGTGGCAT+TGG + chr6_1:94132224-94132243 None:intergenic 45.0%
GGAAGTTCTGTTCTTCCACT+TGG + chr6_1:94132314-94132333 None:intergenic 45.0%
TACTTTCCTGCTCCAGTTCA+AGG - chr6_1:94132459-94132478 Msa0899240:intron 45.0%
TCCAGTTCAAGGTTGGCAAA+TGG - chr6_1:94132470-94132489 Msa0899240:intron 45.0%
CCAGTTCAAGGTTGGCAAAT+GGG - chr6_1:94132471-94132490 Msa0899240:intron 45.0%
TATTGCATTGGAAAGCCCTG+CGG + chr6_1:94132501-94132520 None:intergenic 45.0%
CTTGACGGCTGTGAATAACT+TGG + chr6_1:94132773-94132792 None:intergenic 45.0%
CAAGTTATTCACAGCCGTCA+AGG - chr6_1:94132771-94132790 Msa0899240:intron 45.0%
! TACACTTGGGGCTTGATTTG+GGG + chr6_1:94132831-94132850 None:intergenic 45.0%
CATACACTTGGGGCTTGATT+TGG + chr6_1:94132833-94132852 None:intergenic 45.0%
ATGCATGCAATGAACTGCTC+TGG + chr6_1:94133162-94133181 None:intergenic 45.0%
AGAGCAGTTCATTGCATGCA+TGG - chr6_1:94133161-94133180 Msa0899240:CDS 45.0%
ATTAGGCAGGGAACCTTGAA+AGG + chr6_1:94133269-94133288 None:intergenic 45.0%
TGAAGGTGGTACATTAGGCA+GGG + chr6_1:94133281-94133300 None:intergenic 45.0%
ATGCCTGAAGGTGGTACATT+AGG + chr6_1:94133286-94133305 None:intergenic 45.0%
ATACTTTCAGGGTCATACGC+TGG - chr6_1:94133468-94133487 Msa0899240:CDS 45.0%
TACTTTCAGGGTCATACGCT+GGG - chr6_1:94133469-94133488 Msa0899240:CDS 45.0%
AGGCAAGGAGTTGGGAATTT+CGG - chr6_1:94133840-94133859 Msa0899240:five_prime_UTR 45.0%
AGTTGGGAATTTCGGAACTG+AGG - chr6_1:94133848-94133867 Msa0899240:intron 45.0%
GTTGGGAATTTCGGAACTGA+GGG - chr6_1:94133849-94133868 Msa0899240:intron 45.0%
GGAACTGAGGGAAACATGTT+CGG - chr6_1:94133861-94133880 Msa0899240:intron 45.0%
TGTTTGTACACGGTGCAACA+CGG + chr6_1:94134028-94134047 None:intergenic 45.0%
ATATTGTCTCCCCCTCCTAT+AGG + chr6_1:94134169-94134188 None:intergenic 45.0%
TCTTGGATAAGGGGAGTTTG+AGG - chr6_1:94134193-94134212 Msa0899240:intron 45.0%
!!! TTTTATATTACATTTTAAAA+TGG + chr6_1:94130851-94130870 None:intergenic 5.0%
!!! TTTTTTTTAATTAAAAAGAA+AGG + chr6_1:94132643-94132662 None:intergenic 5.0%
GTTACCGCACTTCAAGAAGG+AGG - chr6_1:94129875-94129894 Msa0899240:intron 50.0%
GCAATTCTTTCCCTGACAGC+AGG - chr6_1:94130047-94130066 Msa0899240:intron 50.0%
GCAAGTACTTACCTGCTGTC+AGG + chr6_1:94130061-94130080 None:intergenic 50.0%
TGACAAACCACCGAGAGGAA+AGG - chr6_1:94130221-94130240 Msa0899240:intron 50.0%
CAGGAGAGTTGAGGCATATC+AGG - chr6_1:94130432-94130451 Msa0899240:CDS 50.0%
AGAGTTGAGGCATATCAGGG+AGG - chr6_1:94130436-94130455 Msa0899240:CDS 50.0%
CCTGTGTGTCTTCGTATGGA+GGG + chr6_1:94130471-94130490 None:intergenic 50.0%
TCCTGTGTGTCTTCGTATGG+AGG + chr6_1:94130472-94130491 None:intergenic 50.0%
CGTTCCTGTGTGTCTTCGTA+TGG + chr6_1:94130475-94130494 None:intergenic 50.0%
GACACACAGGAACGTCGTTA+TGG - chr6_1:94130481-94130500 Msa0899240:CDS 50.0%
AGGAACGTCGTTATGGTGAC+AGG - chr6_1:94130488-94130507 Msa0899240:CDS 50.0%
TATGGTGACAGGTCTAGTCC+AGG - chr6_1:94130499-94130518 Msa0899240:CDS 50.0%
TATCCAGGACTTCTTCCACC+TGG + chr6_1:94130520-94130539 None:intergenic 50.0%
ATTGACAACTGGAGGACGAC+CGG + chr6_1:94130584-94130603 None:intergenic 50.0%
CGCCAATCATTGACAACTGG+AGG + chr6_1:94130592-94130611 None:intergenic 50.0%
CGACGCCAATCATTGACAAC+TGG + chr6_1:94130595-94130614 None:intergenic 50.0%
ATCTCTAACAGGTCGGACCA+CGG + chr6_1:94130704-94130723 None:intergenic 50.0%
!! TTTCCGCTGTTTGGTTTGGG+GGG + chr6_1:94130766-94130785 None:intergenic 50.0%
CGATGCTTCATCACTGACAC+AGG - chr6_1:94130792-94130811 Msa0899240:intron 50.0%
! AGCATGTCGGCATTGAAGCA+TGG + chr6_1:94131021-94131040 None:intergenic 50.0%
TCTCATCTCCCCCTTTAGTG+AGG - chr6_1:94131408-94131427 Msa0899240:CDS 50.0%
ACTCAGCCACCTCACTAAAG+GGG + chr6_1:94131420-94131439 None:intergenic 50.0%
CAACTCAGCCACCTCACTAA+AGG + chr6_1:94131422-94131441 None:intergenic 50.0%
TGGAGCAACAGGTTCAGGAT+CGG + chr6_1:94131584-94131603 None:intergenic 50.0%
ACTGTTGGAGCAACAGGTTC+AGG + chr6_1:94131589-94131608 None:intergenic 50.0%
TGAGGAACTGTTGGAGCAAC+AGG + chr6_1:94131595-94131614 None:intergenic 50.0%
TGTTGGGCTTGAGGAACTGT+TGG + chr6_1:94131604-94131623 None:intergenic 50.0%
CCTGACTGCAAAACAGGTTG+AGG + chr6_1:94131637-94131656 None:intergenic 50.0%
! CCTCAACCTGTTTTGCAGTC+AGG - chr6_1:94131634-94131653 Msa0899240:CDS 50.0%
TGTGTATCACCTTGGACTCC+TGG + chr6_1:94131796-94131815 None:intergenic 50.0%
TTTACAGCACCACCCACTGA+CGG + chr6_1:94132041-94132060 None:intergenic 50.0%
!! GGGTGGTGCTGTAAATAGTC+AGG - chr6_1:94132046-94132065 Msa0899240:CDS 50.0%
! GGTACAGAAGGTGCATGCAA+TGG + chr6_1:94132176-94132195 None:intergenic 50.0%
!! GCATGTGGCATTGGTGCATT+CGG + chr6_1:94132215-94132234 None:intergenic 50.0%
GAGGCATGATGGTATGCATG+TGG + chr6_1:94132230-94132249 None:intergenic 50.0%
!! TAGCAGGCTTTGAGGCATGA+TGG + chr6_1:94132241-94132260 None:intergenic 50.0%
TGCCTCAAAGCCTGCTAATG+AGG - chr6_1:94132244-94132263 Msa0899240:intron 50.0%
AGCCTCATTAGCAGGCTTTG+AGG + chr6_1:94132249-94132268 None:intergenic 50.0%
! GAACTGGAGCAGGAAAGTAC+TGG + chr6_1:94132458-94132477 None:intergenic 50.0%
TTCCTGCTCCAGTTCAAGGT+TGG - chr6_1:94132463-94132482 Msa0899240:intron 50.0%
CCCATTTGCCAACCTTGAAC+TGG + chr6_1:94132474-94132493 None:intergenic 50.0%
GGCTGTGAATAACTTGGCAC+AGG + chr6_1:94132767-94132786 None:intergenic 50.0%
CCTTCCATGTCTTCCTTGCA+CGG - chr6_1:94133091-94133110 Msa0899240:CDS 50.0%
!! GGGAGTGATGGTGGTACATT+AGG + chr6_1:94133124-94133143 None:intergenic 50.0%
!! ATGAACTGCTCTGGCTTGGA+GGG + chr6_1:94133153-94133172 None:intergenic 50.0%
!! AATGAACTGCTCTGGCTTGG+AGG + chr6_1:94133154-94133173 None:intergenic 50.0%
TGCAATGAACTGCTCTGGCT+TGG + chr6_1:94133157-94133176 None:intergenic 50.0%
TGAAGACTGCACGGTTCCTA+CGG + chr6_1:94133203-94133222 None:intergenic 50.0%
!! TGCATGTGGTGGATAACCCA+GGG + chr6_1:94133227-94133246 None:intergenic 50.0%
!! ATGCATGTGGTGGATAACCC+AGG + chr6_1:94133228-94133247 None:intergenic 50.0%
TGGGTTATCCACCACATGCA+TGG - chr6_1:94133227-94133246 Msa0899240:CDS 50.0%
GAACCTTGAAAGGATGGCAG+GGG + chr6_1:94133259-94133278 None:intergenic 50.0%
GGAACCTTGAAAGGATGGCA+GGG + chr6_1:94133260-94133279 None:intergenic 50.0%
CTGAAGGTGGTACATTAGGC+AGG + chr6_1:94133282-94133301 None:intergenic 50.0%
CTGCCTAATGTACCACCTTC+AGG - chr6_1:94133280-94133299 Msa0899240:intron 50.0%
! ATGGATTGCCTAGGTTCGGA+GGG + chr6_1:94133315-94133334 None:intergenic 50.0%
!! TGGGATGGATTGCCTAGGTT+CGG + chr6_1:94133319-94133338 None:intergenic 50.0%
! GCATATGATGACGATGGGGT+TGG + chr6_1:94133352-94133371 None:intergenic 50.0%
TCATATGCATCAGTCCCACC+AGG - chr6_1:94133364-94133383 Msa0899240:intron 50.0%
TCAATGTGCAGGCAAGGAGT+TGG - chr6_1:94133831-94133850 Msa0899240:exon 50.0%
CAATGTGCAGGCAAGGAGTT+GGG - chr6_1:94133832-94133851 Msa0899240:exon 50.0%
! CTATCAGGCAGCTGCTGATT+TGG + chr6_1:94133897-94133916 None:intergenic 50.0%
CAAATCAGCAGCTGCCTGAT+AGG - chr6_1:94133895-94133914 Msa0899240:intron 50.0%
! CGAATGGATTCCCTCCTTTG+GGG + chr6_1:94133950-94133969 None:intergenic 50.0%
! CCGAATGGATTCCCTCCTTT+GGG + chr6_1:94133951-94133970 None:intergenic 50.0%
CCCAAAGGAGGGAATCCATT+CGG - chr6_1:94133948-94133967 Msa0899240:intron 50.0%
CCAAAGGAGGGAATCCATTC+GGG - chr6_1:94133949-94133968 Msa0899240:intron 50.0%
! GATTTGTGATGACCGGCTCT+GGG - chr6_1:94134104-94134123 Msa0899240:intron 50.0%
! TTTTCACTTCGACCCAGAGC+CGG + chr6_1:94134119-94134138 None:intergenic 50.0%
ACCTCTGACAAACCACCGAG+AGG - chr6_1:94130216-94130235 Msa0899240:intron 55.0%
! TCCTCTCGGTGGTTTGTCAG+AGG + chr6_1:94130220-94130239 None:intergenic 55.0%
CTTACGACCTTTCCTCTCGG+TGG + chr6_1:94130231-94130250 None:intergenic 55.0%
CCCTCCATACGAAGACACAC+AGG - chr6_1:94130468-94130487 Msa0899240:CDS 55.0%
AGTCCAGGTGGAAGAAGTCC+TGG - chr6_1:94130514-94130533 Msa0899240:CDS 55.0%
TTGACAACTGGAGGACGACC+GGG + chr6_1:94130583-94130602 None:intergenic 55.0%
TCTCTAACAGGTCGGACCAC+GGG + chr6_1:94130703-94130722 None:intergenic 55.0%
GGGGGTCCACTTATCCTAAG+AGG + chr6_1:94130748-94130767 None:intergenic 55.0%
! TCGGCAGCTTTTCCGCTGTT+TGG + chr6_1:94130775-94130794 None:intergenic 55.0%
CATCTCCCCCTTTAGTGAGG+TGG - chr6_1:94131411-94131430 Msa0899240:CDS 55.0%
CTCAGCCACCTCACTAAAGG+GGG + chr6_1:94131419-94131438 None:intergenic 55.0%
AACTGCATCCTCTGGCAGCT+TGG - chr6_1:94131492-94131511 Msa0899240:intron 55.0%
ACTGGATACCAAGCTGCCAG+AGG + chr6_1:94131503-94131522 None:intergenic 55.0%
TGGACTCCTGGAGCATGAGA+AGG + chr6_1:94131784-94131803 None:intergenic 55.0%
TCTCATGCTCCAGGAGTCCA+AGG - chr6_1:94131784-94131803 Msa0899240:CDS 55.0%
CTAGGAGCTGCTGCTGGAAT+AGG + chr6_1:94131882-94131901 None:intergenic 55.0%
CCAAAACTAGGAGCTGCTGC+TGG + chr6_1:94131888-94131907 None:intergenic 55.0%
! CCAGCAGCAGCTCCTAGTTT+TGG - chr6_1:94131885-94131904 Msa0899240:CDS 55.0%
TTCTCAGCTTTCCCACCCAG+TGG - chr6_1:94131912-94131931 Msa0899240:CDS 55.0%
! GATGGCACTGAAGTGCCACT+GGG + chr6_1:94131930-94131949 None:intergenic 55.0%
TGGTTGCGGATGCTGCAAAC+TGG + chr6_1:94131985-94132004 None:intergenic 55.0%
! GAAGCAGGGAACGTTGGTTG+CGG + chr6_1:94131999-94132018 None:intergenic 55.0%
CTAGCAGAAGCAGGGAACGT+TGG + chr6_1:94132005-94132024 None:intergenic 55.0%
CAATTTCCACCGTCAGTGGG+TGG - chr6_1:94132029-94132048 Msa0899240:CDS 55.0%
CATGCACCTTCTGTACCCAC+AGG - chr6_1:94132179-94132198 Msa0899240:intron 55.0%
ACCTTCTGTACCCACAGGAC+AGG - chr6_1:94132184-94132203 Msa0899240:intron 55.0%
CCTTCTGTACCCACAGGACA+GGG - chr6_1:94132185-94132204 Msa0899240:intron 55.0%
CTTCTGTACCCACAGGACAG+GGG - chr6_1:94132186-94132205 Msa0899240:intron 55.0%
TGCCAACCTTGAACTGGAGC+AGG + chr6_1:94132468-94132487 None:intergenic 55.0%
CCGTGCAAGGAAGACATGGA+AGG + chr6_1:94133094-94133113 None:intergenic 55.0%
ATTAGGCAACGCACCGTGCA+AGG + chr6_1:94133107-94133126 None:intergenic 55.0%
!! TCTGGCTTGGAGGGTGCATT+GGG + chr6_1:94133144-94133163 None:intergenic 55.0%
AATCCACCACTGCCTACCGT+AGG - chr6_1:94133184-94133203 Msa0899240:CDS 55.0%
AACCGTGCAGTCTTCAACCC+TGG - chr6_1:94133207-94133226 Msa0899240:CDS 55.0%
ACCGTGCAGTCTTCAACCCT+GGG - chr6_1:94133208-94133227 Msa0899240:CDS 55.0%
ACCCAGGGTTGAAGACTGCA+CGG + chr6_1:94133212-94133231 None:intergenic 55.0%
GGGAACCTTGAAAGGATGGC+AGG + chr6_1:94133261-94133280 None:intergenic 55.0%
GGCAGGGAACCTTGAAAGGA+TGG + chr6_1:94133265-94133284 None:intergenic 55.0%
ATTACGCACCCTCCGAACCT+AGG - chr6_1:94133304-94133323 Msa0899240:intron 55.0%
!! GATGGATTGCCTAGGTTCGG+AGG + chr6_1:94133316-94133335 None:intergenic 55.0%
!! AGGCATGGGATGGATTGCCT+AGG + chr6_1:94133324-94133343 None:intergenic 55.0%
TAGGCAATCCATCCCATGCC+TGG - chr6_1:94133323-94133342 Msa0899240:intron 55.0%
GTCATACGCTGGGCAGCAAA+TGG - chr6_1:94133479-94133498 Msa0899240:CDS 55.0%
TTAGAGCTGGGAGTGGTTCC+CGG + chr6_1:94133921-94133940 None:intergenic 55.0%
TTGGGGAAGGGGTTAGAGCT+GGG + chr6_1:94133933-94133952 None:intergenic 55.0%
TTTGGGGAAGGGGTTAGAGC+TGG + chr6_1:94133934-94133953 None:intergenic 55.0%
! AGCTCTAACCCCTTCCCCAA+AGG - chr6_1:94133933-94133952 Msa0899240:intron 55.0%
TCTAACCCCTTCCCCAAAGG+AGG - chr6_1:94133936-94133955 Msa0899240:intron 55.0%
CTAACCCCTTCCCCAAAGGA+GGG - chr6_1:94133937-94133956 Msa0899240:intron 55.0%
! GATTCCCTCCTTTGGGGAAG+GGG + chr6_1:94133944-94133963 None:intergenic 55.0%
! GGATTCCCTCCTTTGGGGAA+GGG + chr6_1:94133945-94133964 None:intergenic 55.0%
! TGGATTCCCTCCTTTGGGGA+AGG + chr6_1:94133946-94133965 None:intergenic 55.0%
! CCCGAATGGATTCCCTCCTT+TGG + chr6_1:94133952-94133971 None:intergenic 55.0%
! GGATTTGTGATGACCGGCTC+TGG - chr6_1:94134103-94134122 Msa0899240:intron 55.0%
GGTGACAGGTCTAGTCCAGG+TGG - chr6_1:94130502-94130521 Msa0899240:CDS 60.0%
TCCCGAACGAGCTAGAGACC+TGG - chr6_1:94130663-94130682 Msa0899240:intron 60.0%
! CCCAGGTCTCTAGCTCGTTC+GGG + chr6_1:94130667-94130686 None:intergenic 60.0%
CCCGAACGAGCTAGAGACCT+GGG - chr6_1:94130664-94130683 Msa0899240:intron 60.0%
! GCCCAGGTCTCTAGCTCGTT+CGG + chr6_1:94130668-94130687 None:intergenic 60.0%
TAACAGGTCGGACCACGGGT+GGG + chr6_1:94130699-94130718 None:intergenic 60.0%
GGACCCCCCAAACCAAACAG+CGG - chr6_1:94130760-94130779 Msa0899240:intron 60.0%
! GCACTGAAGTGCCACTGGGT+GGG + chr6_1:94131926-94131945 None:intergenic 60.0%
! GGATGGCACTGAAGTGCCAC+TGG + chr6_1:94131931-94131950 None:intergenic 60.0%
CCCTGTCCTGTGGGTACAGA+AGG + chr6_1:94132188-94132207 None:intergenic 60.0%
TTCGGATGCCCCTGTCCTGT+GGG + chr6_1:94132197-94132216 None:intergenic 60.0%
ATTCGGATGCCCCTGTCCTG+TGG + chr6_1:94132198-94132217 None:intergenic 60.0%
TTGGCAAATGGGTCCTCCGC+AGG - chr6_1:94132482-94132501 Msa0899240:intron 60.0%
TGGCAAATGGGTCCTCCGCA+GGG - chr6_1:94132483-94132502 Msa0899240:intron 60.0%
TGCATTGGAAAGCCCTGCGG+AGG + chr6_1:94132498-94132517 None:intergenic 60.0%
CGCACCGTGCAAGGAAGACA+TGG + chr6_1:94133098-94133117 None:intergenic 60.0%
GGGTGCATTGGGAGTGATGG+TGG + chr6_1:94133133-94133152 None:intergenic 60.0%
! GGAGGGTGCATTGGGAGTGA+TGG + chr6_1:94133136-94133155 None:intergenic 60.0%
!! CTCTGGCTTGGAGGGTGCAT+TGG + chr6_1:94133145-94133164 None:intergenic 60.0%
GTTCCTACGGTAGGCAGTGG+TGG + chr6_1:94133190-94133209 None:intergenic 60.0%
ACGGTTCCTACGGTAGGCAG+TGG + chr6_1:94133193-94133212 None:intergenic 60.0%
GACTGCACGGTTCCTACGGT+AGG + chr6_1:94133199-94133218 None:intergenic 60.0%
GGTGGAGTCCATGCATGTGG+TGG + chr6_1:94133238-94133257 None:intergenic 60.0%
AGGGGTGGAGTCCATGCATG+TGG + chr6_1:94133241-94133260 None:intergenic 60.0%
CCTTGAAAGGATGGCAGGGG+TGG + chr6_1:94133256-94133275 None:intergenic 60.0%
CCACCCCTGCCATCCTTTCA+AGG - chr6_1:94133253-94133272 Msa0899240:CDS 60.0%
GGGTGCGTAATGCCTGAAGG+TGG + chr6_1:94133295-94133314 None:intergenic 60.0%
! GGAGGGTGCGTAATGCCTGA+AGG + chr6_1:94133298-94133317 None:intergenic 60.0%
GTTGGAGTCCAGGCATGGGA+TGG + chr6_1:94133334-94133353 None:intergenic 60.0%
TGGGGTTGGAGTCCAGGCAT+GGG + chr6_1:94133338-94133357 None:intergenic 60.0%
ATGGGGTTGGAGTCCAGGCA+TGG + chr6_1:94133339-94133358 None:intergenic 60.0%
TGACGATGGGGTTGGAGTCC+AGG + chr6_1:94133344-94133363 None:intergenic 60.0%
TCAGCAGCTGCCTGATAGGC+CGG - chr6_1:94133899-94133918 Msa0899240:intron 60.0%
GAAGGGGTTAGAGCTGGGAG+TGG + chr6_1:94133928-94133947 None:intergenic 60.0%
CTAACAGGTCGGACCACGGG+TGG + chr6_1:94130700-94130719 None:intergenic 65.0%
! GGCACTGAAGTGCCACTGGG+TGG + chr6_1:94131927-94131946 None:intergenic 65.0%
ACAGCACCACCCACTGACGG+TGG + chr6_1:94132038-94132057 None:intergenic 65.0%
CAGCAGCTGCCTGATAGGCC+GGG - chr6_1:94133900-94133919 Msa0899240:intron 65.0%
GGAGTGGTTCCCGGCCTATC+AGG + chr6_1:94133912-94133931 None:intergenic 65.0%
! CGGGTGGGCTTGAAGAGCCC+AGG + chr6_1:94130684-94130703 None:intergenic 70.0%
GGGCTCTTCAAGCCCACCCG+TGG - chr6_1:94130684-94130703 Msa0899240:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 94129196 94134487 94129196 ID=Msa0899240;Name=Msa0899240
chr6_1 mRNA 94129196 94134487 94129196 ID=Msa0899240-mRNA-1;Parent=Msa0899240;Name=Msa0899240-mRNA-1;_AED=0.09;_eAED=0.09;_QI=152|1|1|1|0.91|0.84|13|513|649
chr6_1 exon 94129196 94129841 94129196 ID=Msa0899240-mRNA-1:exon:16051;Parent=Msa0899240-mRNA-1
chr6_1 exon 94130160 94130205 94130160 ID=Msa0899240-mRNA-1:exon:16050;Parent=Msa0899240-mRNA-1
chr6_1 exon 94130298 94130595 94130298 ID=Msa0899240-mRNA-1:exon:16049;Parent=Msa0899240-mRNA-1
chr6_1 exon 94130836 94130919 94130836 ID=Msa0899240-mRNA-1:exon:16048;Parent=Msa0899240-mRNA-1
chr6_1 exon 94131150 94131248 94131150 ID=Msa0899240-mRNA-1:exon:16047;Parent=Msa0899240-mRNA-1
chr6_1 exon 94131346 94131510 94131346 ID=Msa0899240-mRNA-1:exon:16046;Parent=Msa0899240-mRNA-1
chr6_1 exon 94131616 94131806 94131616 ID=Msa0899240-mRNA-1:exon:16045;Parent=Msa0899240-mRNA-1
chr6_1 exon 94131878 94132193 94131878 ID=Msa0899240-mRNA-1:exon:16044;Parent=Msa0899240-mRNA-1
chr6_1 exon 94132870 94133277 94132870 ID=Msa0899240-mRNA-1:exon:16043;Parent=Msa0899240-mRNA-1
chr6_1 exon 94133441 94133534 94133441 ID=Msa0899240-mRNA-1:exon:16042;Parent=Msa0899240-mRNA-1
chr6_1 exon 94133615 94133676 94133615 ID=Msa0899240-mRNA-1:exon:16041;Parent=Msa0899240-mRNA-1
chr6_1 exon 94133779 94133866 94133779 ID=Msa0899240-mRNA-1:exon:16040;Parent=Msa0899240-mRNA-1
chr6_1 exon 94134370 94134487 94134370 ID=Msa0899240-mRNA-1:exon:16039;Parent=Msa0899240-mRNA-1
chr6_1 five_prime_UTR 94134370 94134487 94134370 ID=Msa0899240-mRNA-1:five_prime_utr;Parent=Msa0899240-mRNA-1
chr6_1 five_prime_UTR 94133833 94133866 94133833 ID=Msa0899240-mRNA-1:five_prime_utr;Parent=Msa0899240-mRNA-1
chr6_1 CDS 94133779 94133832 94133779 ID=Msa0899240-mRNA-1:cds;Parent=Msa0899240-mRNA-1
chr6_1 CDS 94133615 94133676 94133615 ID=Msa0899240-mRNA-1:cds;Parent=Msa0899240-mRNA-1
chr6_1 CDS 94133441 94133534 94133441 ID=Msa0899240-mRNA-1:cds;Parent=Msa0899240-mRNA-1
chr6_1 CDS 94132870 94133277 94132870 ID=Msa0899240-mRNA-1:cds;Parent=Msa0899240-mRNA-1
chr6_1 CDS 94131878 94132193 94131878 ID=Msa0899240-mRNA-1:cds;Parent=Msa0899240-mRNA-1
chr6_1 CDS 94131616 94131806 94131616 ID=Msa0899240-mRNA-1:cds;Parent=Msa0899240-mRNA-1
chr6_1 CDS 94131346 94131510 94131346 ID=Msa0899240-mRNA-1:cds;Parent=Msa0899240-mRNA-1
chr6_1 CDS 94131150 94131248 94131150 ID=Msa0899240-mRNA-1:cds;Parent=Msa0899240-mRNA-1
chr6_1 CDS 94130836 94130919 94130836 ID=Msa0899240-mRNA-1:cds;Parent=Msa0899240-mRNA-1
chr6_1 CDS 94130298 94130595 94130298 ID=Msa0899240-mRNA-1:cds;Parent=Msa0899240-mRNA-1
chr6_1 CDS 94130160 94130205 94130160 ID=Msa0899240-mRNA-1:cds;Parent=Msa0899240-mRNA-1
chr6_1 CDS 94129709 94129841 94129709 ID=Msa0899240-mRNA-1:cds;Parent=Msa0899240-mRNA-1
chr6_1 three_prime_UTR 94129196 94129708 94129196 ID=Msa0899240-mRNA-1:three_prime_utr;Parent=Msa0899240-mRNA-1
Gene Sequence

>Msa0899240

ATGGCTAAATTTACTTCGCAAGAAGTTACCGCACTTCAAGAAGGAGGAAATCAGCGTGCAAAAGAGATTTATTTTAAAGAATGGGATGCACAACGCAATTCTTTCCCTGACAGCAGTAATGTTAACAGGCTCCGAGAGTTTGTTAAGCATGTTTATGAGGATAGGAGATTCACTGGAGATAGGACCTCTGACAAACCACCGAGAGGAAAGGGTGACAAAGACGATTCCTATGAAAACAGGAGAGTTGAGGCATATCAGGGAGGATCTAAAAGCCCTCCATACGAAGACACACAGGAACGTCGTTATGGTGACAGGTCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGCGATTATAAGAGAAGTCCCGGTCGTCCTCCAGTTGTCAATGATTGGCGTCGTGAAGACCGTAGAGTATCAGATGGAGATTATAAGGTGGAAAGTCAATCTCCCGAACGAGCTAGAGACCTGGGCTCTTCAAGCCCACCCGTGGTCCGACCTGTTAGAGATATTTTGGGAGAAAATGTAATACCTCTTAGGATAAGTGGACCCCCCAAACCAAACAGCGGAAAAGCTGCCGATGCTTCATCACTGACACAGAGAACTGCATCCTCTGGCAGCTTGGTATCCAGTAACGAAAGCCAAGTAGAGATTAAACTTGAGACTACTAAGAGCCTTATTGATTTTGATGCCGATCCTGAACCTGTTGCTCCAACAGTTCCTCAAGCCCAACAATCTAGTGTGCCTCAACCTGTTTTGCAGTCAGGAAATCCCAGTGATGACAATTGGGCTTCTTTTGATGTTGCTTCTGAGGCAAAAGCAAATCCAAGCACCTCAAATTTAAATCCGCTTGAATCTGTTTTGTCCCAATTGTCCGTGTCGGAATCTTTACCTTCTCATGCTCCAGGAGTCCAAGGACCTATTCCAGCAGCAGCTCCTAGTTTTGGCAATTTCTCAGCTTTCCCACCCAGTGGCACTTCAGTGCCATCCGTATCACCTCATAATAATGTAGGACAATGGGCCAGTTTGCAGCATCCGCAACCAACGTTCCCTGCTTCTGCTAGTCAACAATTTCCACCGTCAGTGGGTGGTGCTGTAAATAGTCAGCCATTGCATGCACCTTCTGTACCCACAGGACAGGGGCATCCGAATGCACCAATGCCACATGCATACCATCATGCCTCAAAGCCTGCTAATGAGGCTTTTAACAGTGTTGTTTCTCAACCTTCTGCTGTAGAAGTTAAACCAAGTGGAAGAACAGAACTTCCTGAAGATCTGTTCACTGTAAAACACCAGTACTTTCCTGCTCCAGTTCAAGGTTGGCAAATGGGTCCTCCGCAGGGCTTTCCAATGCAATATAATAATGTGGCGCCTGTGCCAAGTTATTCACAGCCGTCAAGGTCAACAAATCCATTCGATGTCAGCAGTAAACAAACCCCAAATCAAGCCCCAAGTTTTCCTTCCATGTCTTCCTTGCACGGTGCGTTGCCTAATGTACCACCATCACTCCCAATGCACCCTCCAAGCCAGAGCAGTTCATTGCATGCATGGAATCCACCACTGCCTACCGTAGGAACCGTGCAGTCTTCAACCCTGGGTTATCCACCACATGCATGGACTCCACCCCTGCCATCCTTTCAAGGTTCCCTGCCTAATGTACCACCTTCAGGCATTACGCACCCTCCGAACCTAGGCAATCCATCCCATGCCTGGACTCCAACCCCATCGTCATCATATGCATCAGTCCCACCAGGGTCATACGCTGGGCAGCAAATGGCAACTAATATACCAATGCCAAGGCAAGGAGTTGGGAATTTCGGAACTGAGGGAAACATGTTCGGCTTGTCAAATCCAAATCAGCAGCTGCCTGATAGGCCGGGAACCACTCCCAGCTCTAACCCCTTCCCCAAAGGAGGGAATCCATTCGGGTAA
Protein sequence

>Msa0899240

MAKFTSQEVTALQEGGNQRAKEIYFKEWDAQRNSFPDSSNVNRLREFVKHVYEDRRFTGDRTSDKPPRGKGDKDDSYENRRVEAYQGGSKSPPYEDTQERRYGDRSSPGGRSPGYDQESRQYGDYKRSPGRPPVVNDWRREDRRVSDGDYKVESQSPERARDLGSSSPPVVRPVRDILGENVIPLRISGPPKPNSGKAADASSLTQRTASSGSLVSSNESQVEIKLETTKSLIDFDADPEPVAPTVPQAQQSSVPQPVLQSGNPSDDNWASFDVASEAKANPSTSNLNPLESVLSQLSVSESLPSHAPGVQGPIPAAAPSFGNFSAFPPSGTSVPSVSPHNNVGQWASLQHPQPTFPASASQQFPPSVGGAVNSQPLHAPSVPTGQGHPNAPMPHAYHHASKPANEAFNSVVSQPSAVEVKPSGRTELPEDLFTVKHQYFPAPVQGWQMGPPQGFPMQYNNVAPVPSYSQPSRSTNPFDVSSKQTPNQAPSFPSMSSLHGALPNVPPSLPMHPPSQSSSLHAWNPPLPTVGTVQSSTLGYPPHAWTPPLPSFQGSLPNVPPSGITHPPNLGNPSHAWTPTPSSSYASVPPGSYAGQQMATNIPMPRQGVGNFGTEGNMFGLSNPNQQLPDRPGTTPSSNPFPKGGNPFG*