AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0608940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608940 MtrunA17_Chr4g0041461 93.003 343 9 2 1 330 1 341 0.0 660
Msa0608940 MtrunA17_Chr2g0319981 70.588 340 82 4 1 327 1 335 1.29e-161 454
Msa0608940 MtrunA17_Chr1g0164721 35.789 190 106 5 74 251 68 253 1.36e-27 112
Msa0608940 MtrunA17_Chr5g0393371 38.333 120 70 3 70 186 2 120 9.18e-15 74.7
Msa0608940 MtrunA17_Chr7g0272881 30.247 162 101 5 76 231 51 206 1.44e-14 72.4
Msa0608940 MtrunA17_Chr1g0159511 44.000 75 42 0 70 144 2 76 7.26e-14 71.6
Msa0608940 MtrunA17_Chr1g0159491 45.205 73 40 0 74 146 6 78 1.08e-13 65.9
Msa0608940 MtrunA17_Chr8g0352451 36.283 113 67 3 75 185 73 182 1.31e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608940 AT2G42750.1 65.889 343 97 6 1 326 1 340 1.03e-147 420
Msa0608940 AT5G23240.1 38.144 194 106 6 65 249 41 229 5.67e-32 124
Msa0608940 AT1G76700.1 35.537 121 74 3 74 191 6 125 1.64e-12 68.2
Msa0608940 AT1G21080.1 44.156 77 41 1 74 148 6 82 1.97e-12 67.8
Msa0608940 AT1G21080.3 44.156 77 41 1 74 148 6 82 2.29e-12 67.8
Msa0608940 AT1G77020.1 41.558 77 42 1 75 148 7 83 9.60e-12 65.9
Msa0608940 AT3G05345.1 27.607 163 107 5 68 226 38 193 3.04e-11 63.2
Msa0608940 AT5G48030.1 41.791 67 39 0 72 138 92 158 4.36e-11 63.9

Find 96 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATCCATAATTGTAATT+TGG 0.087736 4_2:+56313473 Msa0608940:three_prime_UTR
ACTATAATTGGTGACTTTAA+TGG 0.191913 4_2:+56308873 Msa0608940:exon
CAGGTTGCTCTAATGCTTTC+AGG 0.193170 4_2:+56311877 Msa0608940:intron
TGAAGACTATTATGCAGTTT+TGG 0.211869 4_2:+56309107 Msa0608940:CDS
ATTTACCCAAATTACAATTA+TGG 0.216983 4_2:-56313479 None:intergenic
GATATGTTATAGGGAAAATA+AGG 0.221730 4_2:-56313380 None:intergenic
TATTTCTACCAAGGATTTAA+AGG 0.225259 4_2:+56313719 Msa0608940:three_prime_UTR
ACAATCCATAATTGTAATTT+GGG 0.267467 4_2:+56313474 Msa0608940:three_prime_UTR
ATAGCCGTTTGAATTAATTC+AGG 0.289083 4_2:-56311142 None:intergenic
ATTCAATGACATGCTATATA+TGG 0.294688 4_2:-56313429 None:intergenic
CTGCAGCTGCTGCTAGAAAA+TGG 0.315567 4_2:+56313272 Msa0608940:CDS
GACATCAATCAATCCTTTCA+TGG 0.320575 4_2:+56310097 Msa0608940:CDS
AGTTGCAAACGAAGAGGTTT+TGG 0.340245 4_2:+56309027 Msa0608940:CDS
GGACAGAGAGGATATGTTAT+AGG 0.342543 4_2:-56313390 None:intergenic
ATGATAAAACAAATTCATAC+TGG 0.346560 4_2:+56312979 Msa0608940:CDS
GCCAGAGTATACAATCAGTT+TGG 0.347992 4_2:+56311115 Msa0608940:CDS
TTACATTGACTCTTTCTATA+CGG 0.355741 4_2:-56311546 None:intergenic
ATCTGCTCCGGTGTTGCATC+TGG 0.358971 4_2:-56309834 None:intergenic
GTCCAATGAATGCAGTCAAC+AGG 0.364201 4_2:-56311484 None:intergenic
TCATAAACCCTGCGCTGAAC+TGG 0.373813 4_2:-56310053 None:intergenic
TCAGGAATGGGATCAGCATT+AGG 0.391033 4_2:+56311895 Msa0608940:CDS
CCAAGAGACTACGAAAATTC+AGG 0.392251 4_2:+56313020 Msa0608940:CDS
GGATCGTTGCCACTCAAATC+CGG 0.392784 4_2:-56309894 None:intergenic
TTCCCGGATTTAAAGGGATA+AGG 0.396994 4_2:+56313893 Msa0608940:intron
GCCCTGTTGACTGCATTCAT+TGG 0.406145 4_2:+56311482 Msa0608940:intron
GCTCTAATGCTTTCAGGAAT+GGG 0.406320 4_2:+56311883 Msa0608940:CDS
AGGGTTTATGATGATATTCA+TGG 0.407166 4_2:+56310065 Msa0608940:CDS
GACAGAGAGGATATGTTATA+GGG 0.412780 4_2:-56313389 None:intergenic
AATGTTGCCTGTGATGTGTT+TGG 0.418176 4_2:+56311070 Msa0608940:CDS
ATTTCTACCAAGGATTTAAA+GGG 0.419806 4_2:+56313720 Msa0608940:three_prime_UTR
GGTGCAGAAATTTGTGGTCT+CGG 0.423746 4_2:-56309916 None:intergenic
AAACCTCTTCGTTTGCAACT+TGG 0.425366 4_2:-56309024 None:intergenic
TTTAGAGCTTCTGTGTATAG+TGG 0.435652 4_2:-56308910 None:intergenic
TTCAAACGGCTATTGAAAGT+TGG 0.439837 4_2:+56311152 Msa0608940:CDS
AGTGCCACCCTTTAAATCCT+TGG 0.441659 4_2:-56313727 None:intergenic
TGCTCTAATGCTTTCAGGAA+TGG 0.444362 4_2:+56311882 Msa0608940:CDS
CCAGAGTATACAATCAGTTT+GGG 0.448971 4_2:+56311116 Msa0608940:CDS
TTTGGAATTGAAGAAGACTT+TGG 0.450046 4_2:+56311088 Msa0608940:CDS
TTGGTGGAAGAGGTTTCCTC+TGG 0.451754 4_2:-56313346 None:intergenic
AGTAAAAGTTGCTACTGATC+AGG 0.453197 4_2:+56309053 Msa0608940:CDS
ACAAATTCAGTGATGGGTTG+TGG 0.454596 4_2:-56308936 None:intergenic
AGAAAATTATTATCAGCTAA+AGG 0.461089 4_2:+56313638 Msa0608940:three_prime_UTR
TCTGGAAGTTTGACTGTGGA+AGG 0.462540 4_2:-56313328 None:intergenic
TCATTAGTCCTTGGTGGAAG+AGG 0.480200 4_2:-56313356 None:intergenic
AATGAAGGTGCAGAAATTTG+TGG 0.484237 4_2:-56309922 None:intergenic
AATGACAAAGTTACACATCA+AGG 0.493127 4_2:-56313574 None:intergenic
CTCATAGACTTCATTAATGA+AGG 0.495012 4_2:-56309937 None:intergenic
GTGCAGAAATTTGTGGTCTC+GGG 0.497638 4_2:-56309915 None:intergenic
TAGCCGTTTGAATTAATTCA+GGG 0.500760 4_2:-56311141 None:intergenic
TTCAGCTCCAACACTGTCAC+TGG 0.500793 4_2:-56309088 None:intergenic
GATTTATAGCAGCATATACA+AGG 0.504012 4_2:+56313517 Msa0608940:three_prime_UTR
GATCGTTGCCACTCAAATCC+GGG 0.515416 4_2:-56309893 None:intergenic
TCAGTGATCCAGTTCAGCGC+AGG 0.523230 4_2:+56310045 Msa0608940:CDS
TATGGATGAATTAATTACAT+TGG 0.523638 4_2:-56313411 None:intergenic
TATGCCTTCTTGATCTGCTC+CGG 0.526633 4_2:-56309846 None:intergenic
TCATACTGGGACAATCTTCG+TGG 0.534458 4_2:+56312993 Msa0608940:CDS
CTTGGTGTTGCAAATCTCCA+TGG 0.539226 4_2:-56309006 None:intergenic
TAAGGGTCATTAGTCCTTGG+TGG 0.541327 4_2:-56313362 None:intergenic
TACGACACAAATTCAGTGAT+GGG 0.541733 4_2:-56308942 None:intergenic
GAACCCTGAATTAATTCAAA+CGG 0.544125 4_2:+56311138 Msa0608940:CDS
TCGACGAAAACATGATCCTT+CGG 0.546745 4_2:-56310131 None:intergenic
CTTCATTAATGAAGTCTATG+AGG 0.547350 4_2:+56309938 Msa0608940:CDS
AAATAAGGGTCATTAGTCCT+TGG 0.551053 4_2:-56313365 None:intergenic
ATATGTTATAGGGAAAATAA+GGG 0.553915 4_2:-56313379 None:intergenic
TTCAATTCCAAACACATCAC+AGG 0.555793 4_2:-56311077 None:intergenic
CTACGACACAAATTCAGTGA+TGG 0.563171 4_2:-56308943 None:intergenic
CAGTGATCCAGTTCAGCGCA+GGG 0.564590 4_2:+56310046 Msa0608940:CDS
CCCAAACTGATTGTATACTC+TGG 0.564770 4_2:-56311116 None:intergenic
CTACTCATTTATTTCTACCA+AGG 0.568395 4_2:+56313710 Msa0608940:three_prime_UTR
CATGGACGATTCTAGTCCGA+AGG 0.574240 4_2:+56310115 Msa0608940:CDS
GAAAATGGAGGGAATACTCA+AGG 0.578572 4_2:+56313287 Msa0608940:CDS
TGATAAAACAAATTCATACT+GGG 0.578815 4_2:+56312980 Msa0608940:CDS
CCAGCTTCCAGATGCAACAC+CGG 0.580606 4_2:+56309827 Msa0608940:intron
GTCGATGAATTCAGCTGCAT+AGG 0.581217 4_2:+56310149 Msa0608940:CDS
ATGACAAAGTTACACATCAA+GGG 0.583624 4_2:-56313573 None:intergenic
AAACACATCACAGGCAACAT+TGG 0.584006 4_2:-56311068 None:intergenic
GGACTAGAATCGTCCATGAA+AGG 0.589389 4_2:-56310110 None:intergenic
ATGGAGGGAATACTCAAGGA+AGG 0.597715 4_2:+56313291 Msa0608940:CDS
TCGAGAATGATGAAGCAGAA+AGG 0.598097 4_2:+56312954 Msa0608940:CDS
ACACCAAGTTGCAAACGAAG+AGG 0.606484 4_2:+56309021 Msa0608940:CDS
ATTTGTGTCGTAGAAGCTCA+TGG 0.614378 4_2:+56308953 Msa0608940:CDS
AGCTGCTGCTAGAAAATGGA+GGG 0.615130 4_2:+56313276 Msa0608940:CDS
ATTAATTACATTGGACAGAG+AGG 0.619569 4_2:-56313402 None:intergenic
TCCAATGAATGCAGTCAACA+GGG 0.619810 4_2:-56311483 None:intergenic
TTCCTCTGGAAGTTTGACTG+TGG 0.633663 4_2:-56313332 None:intergenic
TTGTATGAAAACATGCCACC+CGG 0.634799 4_2:+56309875 Msa0608940:CDS
AGGGAATACTCAAGGAAGGG+TGG 0.636023 4_2:+56313295 Msa0608940:CDS
ACATGCCACCCGGATTTGAG+TGG 0.636275 4_2:+56309885 Msa0608940:CDS
CAGCTGCTGCTAGAAAATGG+AGG 0.647077 4_2:+56313275 Msa0608940:CDS
TTCCACAGTCAAACTTCCAG+AGG 0.649396 4_2:+56313330 Msa0608940:CDS
TGGAGGGAATACTCAAGGAA+GGG 0.660724 4_2:+56313292 Msa0608940:CDS
AACACCGGAGCAGATCAAGA+AGG 0.666069 4_2:+56309842 Msa0608940:CDS
GTGTCATGCAGGAACAAGCG+AGG 0.686221 4_2:+56312931 Msa0608940:intron
AGAGGAAACCTCTTCCACCA+AGG 0.699546 4_2:+56313348 Msa0608940:CDS
ATTTATAGCAGCATATACAA+GGG 0.714861 4_2:+56313518 Msa0608940:three_prime_UTR
CGTTGCCACTCAAATCCGGG+TGG 0.724566 4_2:-56309890 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTAGAATTTTTG+AGG - chr4_2:56308772-56308791 None:intergenic 10.0%
!! AAATGAAAATATAAAAATGA+AGG - chr4_2:56308819-56308838 None:intergenic 10.0%
!!! GTTAATTGATATTTTTTTTA+AGG - chr4_2:56309317-56309336 None:intergenic 10.0%
!!! TTTTTAGTAAACAATCATTT+TGG + chr4_2:56309349-56309368 Msa0608940:intron 15.0%
!!! GTTGTTTTGATTTTTTAAAT+AGG + chr4_2:56311214-56311233 Msa0608940:intron 15.0%
!!! TATTACTGATATGTTTTATT+TGG + chr4_2:56311265-56311284 Msa0608940:intron 15.0%
!! AAGTTATTCTTATATTGTTA+AGG - chr4_2:56312095-56312114 None:intergenic 15.0%
!! CAAAATTATGAAAAATGTTA+TGG - chr4_2:56312393-56312412 None:intergenic 15.0%
!!! TACTAATTTTACATTAATGA+GGG + chr4_2:56312770-56312789 Msa0608940:intron 15.0%
!! ATAATTATCTACTAAAGAAA+GGG - chr4_2:56312851-56312870 None:intergenic 15.0%
!! TATTGTTAAAAGAAAAATCA+TGG - chr4_2:56313114-56313133 None:intergenic 15.0%
!!! TATTTTTAGAATTTTTGAGG+TGG - chr4_2:56308769-56308788 None:intergenic 20.0%
!!! AATCTTCTTTTCACTATAAT+TGG + chr4_2:56308861-56308880 Msa0608940:five_prime_UTR 20.0%
!!! TGTGTTTTTATAGAATTTCA+AGG + chr4_2:56309220-56309239 Msa0608940:intron 20.0%
!!! AAGTTTGAAAGTTACTTTTT+TGG - chr4_2:56309612-56309631 None:intergenic 20.0%
!! AAAATTCAAGATATCCAAAA+AGG - chr4_2:56309970-56309989 None:intergenic 20.0%
!! TATTATGCTTGAAAAATTTG+TGG + chr4_2:56309989-56310008 Msa0608940:intron 20.0%
!!! TTTTCTAACTTTTCTATTTC+AGG + chr4_2:56310019-56310038 Msa0608940:intron 20.0%
!!! TATCCAAAAAAGTTTGATTT+AGG + chr4_2:56310284-56310303 Msa0608940:intron 20.0%
!! AACACAATTCTTAAAATACT+AGG + chr4_2:56310601-56310620 Msa0608940:intron 20.0%
!!! TTTTATGTGCTTAATTGATA+TGG + chr4_2:56310911-56310930 Msa0608940:intron 20.0%
!! CATTAACATCTAATTAACAA+AGG - chr4_2:56310972-56310991 None:intergenic 20.0%
!! AACATATCAGTAATATAGAA+TGG - chr4_2:56311260-56311279 None:intergenic 20.0%
!! TTGAAGTTAAGAAATAATAG+TGG - chr4_2:56311311-56311330 None:intergenic 20.0%
!!! TAGTTAAACACTTAGTTTTT+AGG + chr4_2:56311370-56311389 Msa0608940:intron 20.0%
!!! GAAATAAACTTTTATGACTT+TGG - chr4_2:56311574-56311593 None:intergenic 20.0%
!! GTTTAATGACTAAATTAATG+TGG - chr4_2:56311778-56311797 None:intergenic 20.0%
!! ATCTAACCATACTATAATAA+CGG + chr4_2:56311998-56312017 Msa0608940:intron 20.0%
!! CTTATATTGTTAAGGAAAAA+TGG - chr4_2:56312087-56312106 None:intergenic 20.0%
!! GAGAAAAAATGATAATTTAG+GGG - chr4_2:56312132-56312151 None:intergenic 20.0%
!! GGAGAAAAAATGATAATTTA+GGG - chr4_2:56312133-56312152 None:intergenic 20.0%
!! AGGAGAAAAAATGATAATTT+AGG - chr4_2:56312134-56312153 None:intergenic 20.0%
!! GAATTCAAAATTAGTGTAAA+CGG + chr4_2:56312179-56312198 Msa0608940:intron 20.0%
!!! TATGACATTACAAATTTTCA+AGG - chr4_2:56312235-56312254 None:intergenic 20.0%
!! ATTGTCTTAAAGAATATTCT+TGG - chr4_2:56312663-56312682 None:intergenic 20.0%
!!! CTACTAATTTTACATTAATG+AGG + chr4_2:56312769-56312788 Msa0608940:intron 20.0%
!! CATAATTATCTACTAAAGAA+AGG - chr4_2:56312852-56312871 None:intergenic 20.0%
!! ATGATAAAACAAATTCATAC+TGG + chr4_2:56312979-56312998 Msa0608940:CDS 20.0%
!! TGATAAAACAAATTCATACT+GGG + chr4_2:56312980-56312999 Msa0608940:CDS 20.0%
!! GAATATGTAAATACAAAAGA+AGG + chr4_2:56313047-56313066 Msa0608940:intron 20.0%
!!! TTTTAACAATATGCTTTAGT+AGG + chr4_2:56313123-56313142 Msa0608940:intron 20.0%
!! ATCATTTCAAAACTATTTAG+TGG - chr4_2:56313209-56313228 None:intergenic 20.0%
!! ATATGTTATAGGGAAAATAA+GGG - chr4_2:56313382-56313401 None:intergenic 20.0%
!! TATGGATGAATTAATTACAT+TGG - chr4_2:56313414-56313433 None:intergenic 20.0%
!! AACAATCCATAATTGTAATT+TGG + chr4_2:56313473-56313492 Msa0608940:three_prime_UTR 20.0%
!! ACAATCCATAATTGTAATTT+GGG + chr4_2:56313474-56313493 Msa0608940:three_prime_UTR 20.0%
!! ATTTACCCAAATTACAATTA+TGG - chr4_2:56313482-56313501 None:intergenic 20.0%
!! AGAAAATTATTATCAGCTAA+AGG + chr4_2:56313638-56313657 Msa0608940:three_prime_UTR 20.0%
!!! AAGGTTGATATTTTGATGAA+TGG - chr4_2:56308800-56308819 None:intergenic 25.0%
!! ACTATAATTGGTGACTTTAA+TGG + chr4_2:56308873-56308892 Msa0608940:exon 25.0%
!! AAATATGAAGGAACCATTTT+GGG - chr4_2:56309252-56309271 None:intergenic 25.0%
!! AAAATATGAAGGAACCATTT+TGG - chr4_2:56309253-56309272 None:intergenic 25.0%
!! AATGTGTCTTTTAGTCAATT+TGG + chr4_2:56309492-56309511 Msa0608940:intron 25.0%
! TTATTTACAAAAGAGACACT+TGG + chr4_2:56309524-56309543 Msa0608940:intron 25.0%
! TATTTACAAAAGAGACACTT+GGG + chr4_2:56309525-56309544 Msa0608940:intron 25.0%
!!! TGAGTAATTTTTCAGAGAAT+AGG + chr4_2:56309699-56309718 Msa0608940:intron 25.0%
! AATGTTGCCTTATATGTTAA+CGG + chr4_2:56310199-56310218 Msa0608940:intron 25.0%
! TACCAAATATTTAGACCATT+GGG + chr4_2:56310229-56310248 Msa0608940:intron 25.0%
!! TTTATGTGTGTCCATTTTAT+AGG - chr4_2:56310550-56310569 None:intergenic 25.0%
! ATAAAATGGACACACATAAA+AGG + chr4_2:56310550-56310569 Msa0608940:intron 25.0%
! AAGACAATTGAATCAAAATG+TGG - chr4_2:56310758-56310777 None:intergenic 25.0%
! TTTCCTTAATTTAACTCCTT+TGG + chr4_2:56310776-56310795 Msa0608940:intron 25.0%
! TTACCAAAGGAGTTAAATTA+AGG - chr4_2:56310782-56310801 None:intergenic 25.0%
! CTAATTAACAAAGGTAATGA+AGG - chr4_2:56310963-56310982 None:intergenic 25.0%
!!! ATCTATTTTGAGTTTTTGCA+AGG + chr4_2:56310994-56311013 Msa0608940:intron 25.0%
! ATATCAGTAATATAGAATGG+TGG - chr4_2:56311257-56311276 None:intergenic 25.0%
!!! TTACATTGACTCTTTCTATA+CGG - chr4_2:56311549-56311568 None:intergenic 25.0%
! TTACAAATAGAGATCTTAAG+GGG - chr4_2:56311606-56311625 None:intergenic 25.0%
! CTTACAAATAGAGATCTTAA+GGG - chr4_2:56311607-56311626 None:intergenic 25.0%
! TCTTACAAATAGAGATCTTA+AGG - chr4_2:56311608-56311627 None:intergenic 25.0%
!!! GCTATTTAACTTTTCATACT+AGG + chr4_2:56311709-56311728 Msa0608940:intron 25.0%
! GAAAAGACAGTTAAAATTCT+TGG + chr4_2:56312041-56312060 Msa0608940:intron 25.0%
!!! ATTTTTTCTCCTGTTAATCT+TGG + chr4_2:56312142-56312161 Msa0608940:intron 25.0%
!!! TTTTTTCTCCTGTTAATCTT+GGG + chr4_2:56312143-56312162 Msa0608940:intron 25.0%
! TCTCAACAAATATGAATTCT+AGG - chr4_2:56312482-56312501 None:intergenic 25.0%
! TTCAAAACTATTTAGTGGAA+TGG - chr4_2:56313204-56313223 None:intergenic 25.0%
!! AAATGATGATAATTTTGCAG+AGG + chr4_2:56313222-56313241 Msa0608940:intron 25.0%
! GATATGTTATAGGGAAAATA+AGG - chr4_2:56313383-56313402 None:intergenic 25.0%
! ATTCAATGACATGCTATATA+TGG - chr4_2:56313432-56313451 None:intergenic 25.0%
! ATTTATAGCAGCATATACAA+GGG + chr4_2:56313518-56313537 Msa0608940:three_prime_UTR 25.0%
!! TATTTCTACCAAGGATTTAA+AGG + chr4_2:56313719-56313738 Msa0608940:three_prime_UTR 25.0%
! ATTTCTACCAAGGATTTAAA+GGG + chr4_2:56313720-56313739 Msa0608940:three_prime_UTR 25.0%
!!! TTTTAGAATTTTTGAGGTGG+AGG - chr4_2:56308766-56308785 None:intergenic 30.0%
! TGAAGACTATTATGCAGTTT+TGG + chr4_2:56309107-56309126 Msa0608940:CDS 30.0%
! GAAGACTATTATGCAGTTTT+GGG + chr4_2:56309108-56309127 Msa0608940:CDS 30.0%
ACAGACGTAAAATAAGAGTT+TGG - chr4_2:56309151-56309170 None:intergenic 30.0%
TTCAAGGATATTACCCAAAA+TGG + chr4_2:56309236-56309255 Msa0608940:intron 30.0%
! AATGGTTCCTTCATATTTTC+TGG + chr4_2:56309254-56309273 Msa0608940:intron 30.0%
! ATGGTTCCTTCATATTTTCT+GGG + chr4_2:56309255-56309274 Msa0608940:intron 30.0%
ACATGTGTATATGTTAGTAG+AGG + chr4_2:56309286-56309305 Msa0608940:intron 30.0%
ACTAACAAGGAAGTAAATCA+CGG - chr4_2:56309458-56309477 None:intergenic 30.0%
TTAGTTTAAGGAGTTGAACA+AGG + chr4_2:56309571-56309590 Msa0608940:intron 30.0%
TAGTTTAAGGAGTTGAACAA+GGG + chr4_2:56309572-56309591 Msa0608940:intron 30.0%
CTCATAGACTTCATTAATGA+AGG - chr4_2:56309940-56309959 None:intergenic 30.0%
CTTCATTAATGAAGTCTATG+AGG + chr4_2:56309938-56309957 Msa0608940:CDS 30.0%
AGGGTTTATGATGATATTCA+TGG + chr4_2:56310065-56310084 Msa0608940:CDS 30.0%
GTACCAAATATTTAGACCAT+TGG + chr4_2:56310228-56310247 Msa0608940:intron 30.0%
!!! CGTCCTAAATCAAACTTTTT+TGG - chr4_2:56310290-56310309 None:intergenic 30.0%
TATCCAGTATAGTAGTTATG+GGG - chr4_2:56310338-56310357 None:intergenic 30.0%
CTATCCAGTATAGTAGTTAT+GGG - chr4_2:56310339-56310358 None:intergenic 30.0%
CATAACTACTATACTGGATA+GGG + chr4_2:56310338-56310357 Msa0608940:intron 30.0%
ACTCATGATTAGCAATGATT+GGG - chr4_2:56310463-56310482 None:intergenic 30.0%
! GTGTCCATTTTATAGGATTT+GGG - chr4_2:56310543-56310562 None:intergenic 30.0%
! TGTGTCCATTTTATAGGATT+TGG - chr4_2:56310544-56310563 None:intergenic 30.0%
TTGTTAGGGTAAATTACCAA+AGG - chr4_2:56310795-56310814 None:intergenic 30.0%
! TCGGAAATGCTTTTCAATAA+AGG - chr4_2:56310831-56310850 None:intergenic 30.0%
GTCAGCATTTATTATCTCTT+CGG - chr4_2:56310877-56310896 None:intergenic 30.0%
ATACTTCAATATCCTTGAAC+AGG + chr4_2:56311031-56311050 Msa0608940:intron 30.0%
! TTTGGAATTGAAGAAGACTT+TGG + chr4_2:56311088-56311107 Msa0608940:CDS 30.0%
GAACCCTGAATTAATTCAAA+CGG + chr4_2:56311138-56311157 Msa0608940:CDS 30.0%
TAGCCGTTTGAATTAATTCA+GGG - chr4_2:56311144-56311163 None:intergenic 30.0%
ATAGCCGTTTGAATTAATTC+AGG - chr4_2:56311145-56311164 None:intergenic 30.0%
!! AAGTTGGTATGTTTATGACT+AGG + chr4_2:56311168-56311187 Msa0608940:intron 30.0%
ATATGCAGTTATGCTTCATT+TGG + chr4_2:56311345-56311364 Msa0608940:intron 30.0%
GTATAGAAAGAGTCAATGTA+AGG + chr4_2:56311548-56311567 Msa0608940:intron 30.0%
TACAAATAGAGATCTTAAGG+GGG - chr4_2:56311605-56311624 None:intergenic 30.0%
CATACTAGGAAATTTCTTGA+TGG + chr4_2:56311723-56311742 Msa0608940:intron 30.0%
GTAGTTGTTATAACTAGAAG+AGG - chr4_2:56311838-56311857 None:intergenic 30.0%
! TTTAGTTCCTGAAAGATAGA+AGG + chr4_2:56312259-56312278 Msa0608940:intron 30.0%
TTAGTTCCTGAAAGATAGAA+GGG + chr4_2:56312260-56312279 Msa0608940:intron 30.0%
!! CAAGCATAAACGTATTTTGA+TGG + chr4_2:56312345-56312364 Msa0608940:intron 30.0%
CAACTAATCGTGGATAATAA+TGG - chr4_2:56312448-56312467 None:intergenic 30.0%
GTAAAACTTTCAACTAATCG+TGG - chr4_2:56312458-56312477 None:intergenic 30.0%
GAAACATCTGTAAGCAATTT+AGG - chr4_2:56312507-56312526 None:intergenic 30.0%
CCATCTTAAAATTTGTGCTT+AGG - chr4_2:56312557-56312576 None:intergenic 30.0%
!! CCTAAGCACAAATTTTAAGA+TGG + chr4_2:56312554-56312573 Msa0608940:intron 30.0%
CTAACTAAACACCAAGATAT+GGG - chr4_2:56312625-56312644 None:intergenic 30.0%
CTACTAAAGAAAGGGATAAT+AGG - chr4_2:56312843-56312862 None:intergenic 30.0%
TCATGGTTGATCAAGTATTA+TGG - chr4_2:56313097-56313116 None:intergenic 30.0%
CATGATTATTTAGCTGTTTG+TGG + chr4_2:56313146-56313165 Msa0608940:intron 30.0%
ATTAATTACATTGGACAGAG+AGG - chr4_2:56313405-56313424 None:intergenic 30.0%
GATTTATAGCAGCATATACA+AGG + chr4_2:56313517-56313536 Msa0608940:three_prime_UTR 30.0%
ATGACAAAGTTACACATCAA+GGG - chr4_2:56313576-56313595 None:intergenic 30.0%
AATGACAAAGTTACACATCA+AGG - chr4_2:56313577-56313596 None:intergenic 30.0%
!! CTACTCATTTATTTCTACCA+AGG + chr4_2:56313710-56313729 Msa0608940:three_prime_UTR 30.0%
ATCTAATGTCACATAATGTG+TGG + chr4_2:56313828-56313847 Msa0608940:intron 30.0%
AAGTATTTCCCGGATTTAAA+GGG + chr4_2:56313887-56313906 Msa0608940:intron 30.0%
AATCCTTATCCCTTTAAATC+CGG - chr4_2:56313899-56313918 None:intergenic 30.0%
! TTTAGAGCTTCTGTGTATAG+TGG - chr4_2:56308913-56308932 None:intergenic 35.0%
TACGACACAAATTCAGTGAT+GGG - chr4_2:56308945-56308964 None:intergenic 35.0%
AAAAAACTGCAACTAGTCCA+TGG + chr4_2:56308989-56309008 Msa0608940:CDS 35.0%
AGTAAAAGTTGCTACTGATC+AGG + chr4_2:56309053-56309072 Msa0608940:CDS 35.0%
GAGGACTAAACTAACTAACA+AGG - chr4_2:56309471-56309490 None:intergenic 35.0%
TTGACTAAAAGACACATTCG+AGG - chr4_2:56309490-56309509 None:intergenic 35.0%
! ATTCGACGAGTGTTAGTTTA+AGG + chr4_2:56309559-56309578 Msa0608940:intron 35.0%
! TTGAGTGATTTTCTGAACTG+TGG + chr4_2:56309649-56309668 Msa0608940:intron 35.0%
! TGAGTGATTTTCTGAACTGT+GGG + chr4_2:56309650-56309669 Msa0608940:intron 35.0%
! AATGAAGGTGCAGAAATTTG+TGG - chr4_2:56309925-56309944 None:intergenic 35.0%
CATTAATGAAGTCTATGAGG+TGG + chr4_2:56309941-56309960 Msa0608940:intron 35.0%
GACATCAATCAATCCTTTCA+TGG + chr4_2:56310097-56310116 Msa0608940:CDS 35.0%
CTGAACACCGTTAACATATA+AGG - chr4_2:56310209-56310228 None:intergenic 35.0%
ATCCAGTATAGTAGTTATGG+GGG - chr4_2:56310337-56310356 None:intergenic 35.0%
CCTATCCAGTATAGTAGTTA+TGG - chr4_2:56310340-56310359 None:intergenic 35.0%
CCATAACTACTATACTGGAT+AGG + chr4_2:56310337-56310356 Msa0608940:intron 35.0%
AGCAAGTCCATTATTATGGA+CGG - chr4_2:56310391-56310410 None:intergenic 35.0%
AAGGAGCAAGTCCATTATTA+TGG - chr4_2:56310395-56310414 None:intergenic 35.0%
CACTCATGATTAGCAATGAT+TGG - chr4_2:56310464-56310483 None:intergenic 35.0%
AATCATGAGTGAATATCCTG+TGG + chr4_2:56310473-56310492 Msa0608940:intron 35.0%
ATCATGAGTGAATATCCTGT+GGG + chr4_2:56310474-56310493 Msa0608940:intron 35.0%
AAGGCCCAAATCCTATAAAA+TGG + chr4_2:56310536-56310555 Msa0608940:intron 35.0%
ACTAGGTTATCCTCCAATTA+AGG + chr4_2:56310618-56310637 Msa0608940:intron 35.0%
CTAGGTTATCCTCCAATTAA+GGG + chr4_2:56310619-56310638 Msa0608940:intron 35.0%
TCACTCATCTTGAACAGAAA+CGG + chr4_2:56310644-56310663 Msa0608940:intron 35.0%
ACTGACATAGATAGAACTGT+TGG - chr4_2:56310700-56310719 None:intergenic 35.0%
!! GAAGTGTTGTCAGATTGTTA+GGG - chr4_2:56310809-56310828 None:intergenic 35.0%
! ATTTGACTGACTCATCGAAT+CGG - chr4_2:56310850-56310869 None:intergenic 35.0%
AAGGTAATGAAGGACTATCT+AGG - chr4_2:56310953-56310972 None:intergenic 35.0%
TTCAATTCCAAACACATCAC+AGG - chr4_2:56311080-56311099 None:intergenic 35.0%
CCAGAGTATACAATCAGTTT+GGG + chr4_2:56311116-56311135 Msa0608940:CDS 35.0%
TTCAAACGGCTATTGAAAGT+TGG + chr4_2:56311152-56311171 Msa0608940:CDS 35.0%
!!! CACTTAGTTTTTAGGACCTT+CGG + chr4_2:56311378-56311397 Msa0608940:intron 35.0%
!!! CAATGTTATTTTCATGCCGA+AGG - chr4_2:56311397-56311416 None:intergenic 35.0%
TTGTGAAGCAACTAAGCTAA+CGG + chr4_2:56311418-56311437 Msa0608940:intron 35.0%
ACAAATAGAGATCTTAAGGG+GGG - chr4_2:56311604-56311623 None:intergenic 35.0%
!!! TTTTTTCCCTTTCTGCTTGA+TGG + chr4_2:56311646-56311665 Msa0608940:intron 35.0%
! ATTAGGCGATGTTTTCAGAA+TGG + chr4_2:56311912-56311931 Msa0608940:CDS 35.0%
GGTAATAGCTTAGAGATTAC+TGG + chr4_2:56311933-56311952 Msa0608940:intron 35.0%
GTATGGTTAGATAACATCAG+AGG - chr4_2:56311990-56312009 None:intergenic 35.0%
AACCATACTATAATAACGGC+AGG + chr4_2:56312002-56312021 Msa0608940:intron 35.0%
! TTAACTGTCTTTTCTCCCAT+CGG - chr4_2:56312035-56312054 None:intergenic 35.0%
AATCTTGGGAAAGGTCTTTA+TGG + chr4_2:56312157-56312176 Msa0608940:intron 35.0%
AAATTAGTGTAAACGGCCAT+TGG + chr4_2:56312186-56312205 Msa0608940:intron 35.0%
GATATACCCTTCTATCTTTC+AGG - chr4_2:56312269-56312288 None:intergenic 35.0%
CCTAACTAAACACCAAGATA+TGG - chr4_2:56312626-56312645 None:intergenic 35.0%
!! CCATATCTTGGTGTTTAGTT+AGG + chr4_2:56312623-56312642 Msa0608940:intron 35.0%
!!! TTTTGAAGTTCCGAGTTCTT+AGG + chr4_2:56312709-56312728 Msa0608940:intron 35.0%
AACAATTATGAGTGTCATGC+AGG + chr4_2:56312920-56312939 Msa0608940:intron 35.0%
AGACTACGAAAATTCAGGTA+TGG + chr4_2:56313025-56313044 Msa0608940:intron 35.0%
! TGATGATAATTTTGCAGAGG+AGG + chr4_2:56313225-56313244 Msa0608940:intron 35.0%
AAATAAGGGTCATTAGTCCT+TGG - chr4_2:56313368-56313387 None:intergenic 35.0%
GACAGAGAGGATATGTTATA+GGG - chr4_2:56313392-56313411 None:intergenic 35.0%
! ATTGTCAGTGTCATTGTATC+TGG + chr4_2:56313793-56313812 Msa0608940:intron 35.0%
! TTGTCAGTGTCATTGTATCT+GGG + chr4_2:56313794-56313813 Msa0608940:intron 35.0%
CTTGTGTGACATTAATGTCA+CGG - chr4_2:56313870-56313889 None:intergenic 35.0%
AATGTCACACAAGTATTTCC+CGG + chr4_2:56313877-56313896 Msa0608940:intron 35.0%
CAAGTATTTCCCGGATTTAA+AGG + chr4_2:56313886-56313905 Msa0608940:intron 35.0%
ATCCTTATCCCTTTAAATCC+GGG - chr4_2:56313898-56313917 None:intergenic 35.0%
!! ACAAATTCAGTGATGGGTTG+TGG - chr4_2:56308939-56308958 None:intergenic 40.0%
CTACGACACAAATTCAGTGA+TGG - chr4_2:56308946-56308965 None:intergenic 40.0%
ATTTGTGTCGTAGAAGCTCA+TGG + chr4_2:56308953-56308972 Msa0608940:CDS 40.0%
AAACCTCTTCGTTTGCAACT+TGG - chr4_2:56309027-56309046 None:intergenic 40.0%
! AGTTGCAAACGAAGAGGTTT+TGG + chr4_2:56309027-56309046 Msa0608940:CDS 40.0%
! TTTTCAACCAGTGACAGTGT+TGG + chr4_2:56309081-56309100 Msa0608940:CDS 40.0%
!!! CTATTATGCAGTTTTGGGTC+TGG + chr4_2:56309113-56309132 Msa0608940:CDS 40.0%
!!! TCCTTCATATTTTCTGGGAC+TGG + chr4_2:56309260-56309279 Msa0608940:intron 40.0%
!!! CCTTCATATTTTCTGGGACT+GGG + chr4_2:56309261-56309280 Msa0608940:intron 40.0%
CACGGACAAAAGACACATTT+AGG - chr4_2:56309440-56309459 None:intergenic 40.0%
TCCAGCTAATATATCGTCTG+CGG - chr4_2:56309729-56309748 None:intergenic 40.0%
TTGTATGAAAACATGCCACC+CGG + chr4_2:56309875-56309894 Msa0608940:CDS 40.0%
! CTATGAGGTGGTTTCCTTTT+TGG + chr4_2:56309953-56309972 Msa0608940:intron 40.0%
TCGACGAAAACATGATCCTT+CGG - chr4_2:56310134-56310153 None:intergenic 40.0%
GGCCCAATGGTCTAAATATT+TGG - chr4_2:56310234-56310253 None:intergenic 40.0%
AATATTTAGACCATTGGGCC+AGG + chr4_2:56310234-56310253 Msa0608940:intron 40.0%
GACGACTGAGTAAAGAATGT+AGG + chr4_2:56310306-56310325 Msa0608940:intron 40.0%
AGTATAGTAGTTATGGGGGA+TGG - chr4_2:56310333-56310352 None:intergenic 40.0%
ATCCCCCATAACTACTATAC+TGG + chr4_2:56310332-56310351 Msa0608940:intron 40.0%
TACTATACTGGATAGGGAGA+TGG + chr4_2:56310344-56310363 Msa0608940:intron 40.0%
ACTATACTGGATAGGGAGAT+GGG + chr4_2:56310345-56310364 Msa0608940:intron 40.0%
ATGATTGGGTGAGGTATGAA+GGG - chr4_2:56310449-56310468 None:intergenic 40.0%
AATGATTGGGTGAGGTATGA+AGG - chr4_2:56310450-56310469 None:intergenic 40.0%
TGATTAGCAATGATTGGGTG+AGG - chr4_2:56310458-56310477 None:intergenic 40.0%
TCATGAGTGAATATCCTGTG+GGG + chr4_2:56310475-56310494 Msa0608940:intron 40.0%
GGACACACATAAAAGGCTAA+CGG + chr4_2:56310557-56310576 Msa0608940:intron 40.0%
AGATGAGTGACACCCTTAAT+TGG - chr4_2:56310634-56310653 None:intergenic 40.0%
!! GGAAGTGTTGTCAGATTGTT+AGG - chr4_2:56310810-56310829 None:intergenic 40.0%
AAACACATCACAGGCAACAT+TGG - chr4_2:56311071-56311090 None:intergenic 40.0%
AATGTTGCCTGTGATGTGTT+TGG + chr4_2:56311070-56311089 Msa0608940:CDS 40.0%
GCCAGAGTATACAATCAGTT+TGG + chr4_2:56311115-56311134 Msa0608940:CDS 40.0%
CCCAAACTGATTGTATACTC+TGG - chr4_2:56311119-56311138 None:intergenic 40.0%
TCCAATGAATGCAGTCAACA+GGG - chr4_2:56311486-56311505 None:intergenic 40.0%
TAGTAGCCATCAAGCAGAAA+GGG - chr4_2:56311655-56311674 None:intergenic 40.0%
TTAGTAGCCATCAAGCAGAA+AGG - chr4_2:56311656-56311675 None:intergenic 40.0%
TGAGATTCTTAAATCCGAGC+AGG + chr4_2:56311858-56311877 Msa0608940:intron 40.0%
TGCTCTAATGCTTTCAGGAA+TGG + chr4_2:56311882-56311901 Msa0608940:CDS 40.0%
GCTCTAATGCTTTCAGGAAT+GGG + chr4_2:56311883-56311902 Msa0608940:CDS 40.0%
TGCCTGCCGTTATTATAGTA+TGG - chr4_2:56312007-56312026 None:intergenic 40.0%
! TAACTGTCTTTTCTCCCATC+GGG - chr4_2:56312034-56312053 None:intergenic 40.0%
TCTCCTGTTAATCTTGGGAA+AGG + chr4_2:56312148-56312167 Msa0608940:intron 40.0%
AGACCTTTCCCAAGATTAAC+AGG - chr4_2:56312154-56312173 None:intergenic 40.0%
ATGTCCGCTCTTGAGTATAA+CGG + chr4_2:56312580-56312599 Msa0608940:intron 40.0%
AAGTTCCGAGTTCTTAGGAT+TGG + chr4_2:56312714-56312733 Msa0608940:intron 40.0%
TTGGTCCAATCCTAAGAACT+CGG - chr4_2:56312722-56312741 None:intergenic 40.0%
AAGAAAGGGATAATAGGTCG+AGG - chr4_2:56312837-56312856 None:intergenic 40.0%
TCGAGAATGATGAAGCAGAA+AGG + chr4_2:56312954-56312973 Msa0608940:CDS 40.0%
! CCTGAATTTTCGTAGTCTCT+TGG - chr4_2:56313023-56313042 None:intergenic 40.0%
CCAAGAGACTACGAAAATTC+AGG + chr4_2:56313020-56313039 Msa0608940:CDS 40.0%
GAAAATGGAGGGAATACTCA+AGG + chr4_2:56313287-56313306 Msa0608940:CDS 40.0%
GGACAGAGAGGATATGTTAT+AGG - chr4_2:56313393-56313412 None:intergenic 40.0%
TCTACCAAGGATTTAAAGGG+TGG + chr4_2:56313723-56313742 Msa0608940:intron 40.0%
ACAATGACACTGACAATGTG+TGG - chr4_2:56313790-56313809 None:intergenic 40.0%
GTCACGGTGACATTAAATCT+GGG - chr4_2:56313854-56313873 None:intergenic 40.0%
TGTCACGGTGACATTAAATC+TGG - chr4_2:56313855-56313874 None:intergenic 40.0%
TTCCCGGATTTAAAGGGATA+AGG + chr4_2:56313893-56313912 Msa0608940:intron 40.0%
!! CTTGGTGTTGCAAATCTCCA+TGG - chr4_2:56309009-56309028 None:intergenic 45.0%
ACACCAAGTTGCAAACGAAG+AGG + chr4_2:56309021-56309040 Msa0608940:CDS 45.0%
CCCAGTCCCAGAAAATATGA+AGG - chr4_2:56309264-56309283 None:intergenic 45.0%
ATGTGAGAGTGAGACGTTGT+CGG + chr4_2:56309381-56309400 Msa0608940:intron 45.0%
ACCGCAGACGATATATTAGC+TGG + chr4_2:56309725-56309744 Msa0608940:intron 45.0%
GCATCTGGAAGCTGGTAAAA+AGG - chr4_2:56309822-56309841 None:intergenic 45.0%
TATGCCTTCTTGATCTGCTC+CGG - chr4_2:56309849-56309868 None:intergenic 45.0%
GTGCAGAAATTTGTGGTCTC+GGG - chr4_2:56309918-56309937 None:intergenic 45.0%
GGTGCAGAAATTTGTGGTCT+CGG - chr4_2:56309919-56309938 None:intergenic 45.0%
GGACTAGAATCGTCCATGAA+AGG - chr4_2:56310113-56310132 None:intergenic 45.0%
GTCGATGAATTCAGCTGCAT+AGG + chr4_2:56310149-56310168 Msa0608940:CDS 45.0%
CTATACTGGATAGGGAGATG+GGG + chr4_2:56310346-56310365 Msa0608940:intron 45.0%
AGAGCGACCGTCCATAATAA+TGG + chr4_2:56310381-56310400 Msa0608940:intron 45.0%
TGAGTGACACCCTTAATTGG+AGG - chr4_2:56310631-56310650 None:intergenic 45.0%
! CAGTTTTTGCAGCCTGTTCA+AGG - chr4_2:56311046-56311065 None:intergenic 45.0%
GTCCAATGAATGCAGTCAAC+AGG - chr4_2:56311487-56311506 None:intergenic 45.0%
TAGAGATCTTAAGGGGGGAA+AGG - chr4_2:56311599-56311618 None:intergenic 45.0%
AAGCATTAGAGCAACCTGCT+CGG - chr4_2:56311875-56311894 None:intergenic 45.0%
CAGGTTGCTCTAATGCTTTC+AGG + chr4_2:56311877-56311896 Msa0608940:intron 45.0%
TCAGGAATGGGATCAGCATT+AGG + chr4_2:56311895-56311914 Msa0608940:CDS 45.0%
CACAGTCATTCAAGAGCCAA+TGG - chr4_2:56312205-56312224 None:intergenic 45.0%
CAGTCCGTTATACTCAAGAG+CGG - chr4_2:56312587-56312606 None:intergenic 45.0%
GACTTGAGAGTCCCATATCT+TGG + chr4_2:56312611-56312630 Msa0608940:intron 45.0%
TACTGCGTTTGTGTTCAAGC+GGG - chr4_2:56312745-56312764 None:intergenic 45.0%
CTACTGCGTTTGTGTTCAAG+CGG - chr4_2:56312746-56312765 None:intergenic 45.0%
TCATACTGGGACAATCTTCG+TGG + chr4_2:56312993-56313012 Msa0608940:CDS 45.0%
AGCTGCTGCTAGAAAATGGA+GGG + chr4_2:56313276-56313295 Msa0608940:CDS 45.0%
ATGGAGGGAATACTCAAGGA+AGG + chr4_2:56313291-56313310 Msa0608940:CDS 45.0%
TGGAGGGAATACTCAAGGAA+GGG + chr4_2:56313292-56313311 Msa0608940:CDS 45.0%
TCTGGAAGTTTGACTGTGGA+AGG - chr4_2:56313331-56313350 None:intergenic 45.0%
TTCCACAGTCAAACTTCCAG+AGG + chr4_2:56313330-56313349 Msa0608940:CDS 45.0%
! TTCCTCTGGAAGTTTGACTG+TGG - chr4_2:56313335-56313354 None:intergenic 45.0%
TCATTAGTCCTTGGTGGAAG+AGG - chr4_2:56313359-56313378 None:intergenic 45.0%
TAAGGGTCATTAGTCCTTGG+TGG - chr4_2:56313365-56313384 None:intergenic 45.0%
AGTGCCACCCTTTAAATCCT+TGG - chr4_2:56313730-56313749 None:intergenic 45.0%
GGATTTAAAGGGTGGCACTT+TGG + chr4_2:56313731-56313750 Msa0608940:intron 45.0%
!!! TTAATTGATATTTTTTTTAA+GGG - chr4_2:56309316-56309335 None:intergenic 5.0%
TTCAGCTCCAACACTGTCAC+TGG - chr4_2:56309091-56309110 None:intergenic 50.0%
AACACCGGAGCAGATCAAGA+AGG + chr4_2:56309842-56309861 Msa0608940:CDS 50.0%
GATCGTTGCCACTCAAATCC+GGG - chr4_2:56309896-56309915 None:intergenic 50.0%
GGATCGTTGCCACTCAAATC+CGG - chr4_2:56309897-56309916 None:intergenic 50.0%
TCATAAACCCTGCGCTGAAC+TGG - chr4_2:56310056-56310075 None:intergenic 50.0%
CATGGACGATTCTAGTCCGA+AGG + chr4_2:56310115-56310134 Msa0608940:CDS 50.0%
ATACAACTTACCCCTCCCGA+TGG - chr4_2:56310267-56310286 None:intergenic 50.0%
TATGGACGGTCGCTCTTACT+TGG - chr4_2:56310377-56310396 None:intergenic 50.0%
GCTCCTTCCAGTTCCAAACA+TGG + chr4_2:56310408-56310427 Msa0608940:intron 50.0%
! ACGCCATGTTTGGAACTGGA+AGG - chr4_2:56310414-56310433 None:intergenic 50.0%
! TGTCACGCCATGTTTGGAAC+TGG - chr4_2:56310418-56310437 None:intergenic 50.0%
CGTCTGAAAACACCACGTCT+AGG - chr4_2:56310673-56310692 None:intergenic 50.0%
! GCCCTGTTGACTGCATTCAT+TGG + chr4_2:56311482-56311501 Msa0608940:intron 50.0%
CTGCAGCTGCTGCTAGAAAA+TGG + chr4_2:56313272-56313291 Msa0608940:CDS 50.0%
CAGCTGCTGCTAGAAAATGG+AGG + chr4_2:56313275-56313294 Msa0608940:CDS 50.0%
AGGGAATACTCAAGGAAGGG+TGG + chr4_2:56313295-56313314 Msa0608940:CDS 50.0%
TTGGTGGAAGAGGTTTCCTC+TGG - chr4_2:56313349-56313368 None:intergenic 50.0%
AGAGGAAACCTCTTCCACCA+AGG + chr4_2:56313348-56313367 Msa0608940:CDS 50.0%
AATGTGTGGCCCAGATGCAA+TGG - chr4_2:56313776-56313795 None:intergenic 50.0%
CCAGCTTCCAGATGCAACAC+CGG + chr4_2:56309827-56309846 Msa0608940:intron 55.0%
!! ATCTGCTCCGGTGTTGCATC+TGG - chr4_2:56309837-56309856 None:intergenic 55.0%
ACATGCCACCCGGATTTGAG+TGG + chr4_2:56309885-56309904 Msa0608940:CDS 55.0%
TCAGTGATCCAGTTCAGCGC+AGG + chr4_2:56310045-56310064 Msa0608940:CDS 55.0%
CAGTGATCCAGTTCAGCGCA+GGG + chr4_2:56310046-56310065 Msa0608940:CDS 55.0%
TGGAATTGAGCCTGGCCCAA+TGG - chr4_2:56310247-56310266 None:intergenic 55.0%
TGGGCCAGGCTCAATTCCAT+CGG + chr4_2:56310248-56310267 Msa0608940:intron 55.0%
CAGGCTCAATTCCATCGGGA+GGG + chr4_2:56310253-56310272 Msa0608940:intron 55.0%
AGGCTCAATTCCATCGGGAG+GGG + chr4_2:56310254-56310273 Msa0608940:intron 55.0%
GGGACCAAGCACCCAAATCA+GGG + chr4_2:56310495-56310514 Msa0608940:intron 55.0%
ACCAAGCACCCAAATCAGGG+TGG + chr4_2:56310498-56310517 Msa0608940:intron 55.0%
CCAAGCACCCAAATCAGGGT+GGG + chr4_2:56310499-56310518 Msa0608940:intron 55.0%
TTGGGCCTTCTCCTTTCGTC+AGG - chr4_2:56310525-56310544 None:intergenic 55.0%
CAGAAACGGTGACCTAGACG+TGG + chr4_2:56310658-56310677 Msa0608940:intron 55.0%
AACGGCAGGCAAATACCCGA+TGG + chr4_2:56312016-56312035 Msa0608940:intron 55.0%
ACGGCAGGCAAATACCCGAT+GGG + chr4_2:56312017-56312036 Msa0608940:intron 55.0%
GCGTTTGTGTTCAAGCGGGT+TGG - chr4_2:56312741-56312760 None:intergenic 55.0%
GTGTCATGCAGGAACAAGCG+AGG + chr4_2:56312931-56312950 Msa0608940:intron 55.0%
! TGTCACCGTGCCATTGCATC+TGG + chr4_2:56313763-56313782 Msa0608940:intron 55.0%
! GTCACCGTGCCATTGCATCT+GGG + chr4_2:56313764-56313783 Msa0608940:intron 55.0%
!! CCGGTGTTGCATCTGGAAGC+TGG - chr4_2:56309830-56309849 None:intergenic 60.0%
CGTTGCCACTCAAATCCGGG+TGG - chr4_2:56309893-56309912 None:intergenic 60.0%
GGGCCAGGCTCAATTCCATC+GGG + chr4_2:56310249-56310268 Msa0608940:intron 60.0%
CCTCCCGATGGAATTGAGCC+TGG - chr4_2:56310255-56310274 None:intergenic 60.0%
CCAGGCTCAATTCCATCGGG+AGG + chr4_2:56310252-56310271 Msa0608940:intron 60.0%
GACGCGTGTCACGCCATGTT+TGG - chr4_2:56310424-56310443 None:intergenic 60.0%
TTTGGGTGCTTGGTCCCCAC+AGG - chr4_2:56310492-56310511 None:intergenic 60.0%
GGGGACCAAGCACCCAAATC+AGG + chr4_2:56310494-56310513 Msa0608940:intron 60.0%
!! CCCACCCTGATTTGGGTGCT+TGG - chr4_2:56310502-56310521 None:intergenic 60.0%
CGTCAGGCCCACCCTGATTT+GGG - chr4_2:56310509-56310528 None:intergenic 60.0%
TCGTCAGGCCCACCCTGATT+TGG - chr4_2:56310510-56310529 None:intergenic 60.0%
ATCAGGGTGGGCCTGACGAA+AGG + chr4_2:56310511-56310530 Msa0608940:intron 60.0%
GTGGGCCTGACGAAAGGAGA+AGG + chr4_2:56310517-56310536 Msa0608940:intron 60.0%
GTGGCCCAGATGCAATGGCA+CGG - chr4_2:56313771-56313790 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 56308761 56313958 56308761 ID=Msa0608940;Name=Msa0608940
chr4_2 mRNA 56308761 56313958 56308761 ID=Msa0608940-mRNA-1;Parent=Msa0608940;Name=Msa0608940-mRNA-1;_AED=0.10;_eAED=0.10;_QI=131|0.87|1|1|0.75|0.77|9|416|330
chr4_2 exon 56308761 56309134 56308761 ID=Msa0608940-mRNA-1:exon:14458;Parent=Msa0608940-mRNA-1
chr4_2 exon 56309831 56309959 56309831 ID=Msa0608940-mRNA-1:exon:14459;Parent=Msa0608940-mRNA-1
chr4_2 exon 56310041 56310170 56310041 ID=Msa0608940-mRNA-1:exon:14460;Parent=Msa0608940-mRNA-1
chr4_2 exon 56311053 56311173 56311053 ID=Msa0608940-mRNA-1:exon:14461;Parent=Msa0608940-mRNA-1
chr4_2 exon 56311483 56311564 56311483 ID=Msa0608940-mRNA-1:exon:14462;Parent=Msa0608940-mRNA-1
chr4_2 exon 56311880 56311933 56311880 ID=Msa0608940-mRNA-1:exon:14463;Parent=Msa0608940-mRNA-1
chr4_2 exon 56312942 56313041 56312942 ID=Msa0608940-mRNA-1:exon:14464;Parent=Msa0608940-mRNA-1
chr4_2 exon 56313242 56313740 56313242 ID=Msa0608940-mRNA-1:exon:14465;Parent=Msa0608940-mRNA-1
chr4_2 exon 56313908 56313958 56313908 ID=Msa0608940-mRNA-1:exon:14466;Parent=Msa0608940-mRNA-1
chr4_2 five_prime_UTR 56308761 56308891 56308761 ID=Msa0608940-mRNA-1:five_prime_utr;Parent=Msa0608940-mRNA-1
chr4_2 CDS 56308892 56309134 56308892 ID=Msa0608940-mRNA-1:cds;Parent=Msa0608940-mRNA-1
chr4_2 CDS 56309831 56309959 56309831 ID=Msa0608940-mRNA-1:cds;Parent=Msa0608940-mRNA-1
chr4_2 CDS 56310041 56310170 56310041 ID=Msa0608940-mRNA-1:cds;Parent=Msa0608940-mRNA-1
chr4_2 CDS 56311053 56311173 56311053 ID=Msa0608940-mRNA-1:cds;Parent=Msa0608940-mRNA-1
chr4_2 CDS 56311483 56311564 56311483 ID=Msa0608940-mRNA-1:cds;Parent=Msa0608940-mRNA-1
chr4_2 CDS 56311880 56311933 56311880 ID=Msa0608940-mRNA-1:cds;Parent=Msa0608940-mRNA-1
chr4_2 CDS 56312942 56313041 56312942 ID=Msa0608940-mRNA-1:cds;Parent=Msa0608940-mRNA-1
chr4_2 CDS 56313242 56313375 56313242 ID=Msa0608940-mRNA-1:cds;Parent=Msa0608940-mRNA-1
chr4_2 three_prime_UTR 56313376 56313740 56313376 ID=Msa0608940-mRNA-1:three_prime_utr;Parent=Msa0608940-mRNA-1
chr4_2 three_prime_UTR 56313908 56313958 56313908 ID=Msa0608940-mRNA-1:three_prime_utr;Parent=Msa0608940-mRNA-1
Gene Sequence

>Msa0608940

ATGGCTCAATTATTGTCACCACTATACACAGAAGCTCTAAAAATCCACAACCCATCACTGAATTTGTGTCGTAGAAGCTCATGGCAGATGCTACAACAAAAAACTGCAACTAGTCCATGGAGATTTGCAACACCAAGTTGCAAACGAAGAGGTTTTGGTAGAGTAAAAGTTGCTACTGATCAGGAATCATTTTCAACCAGTGACAGTGTTGGAGCTGAAGACTATTATGCAGTTTTGGGTCTGCTTCCAGATGCAACACCGGAGCAGATCAAGAAGGCATACTACAATTGTATGAAAACATGCCACCCGGATTTGAGTGGCAACGATCCCGAGACCACAAATTTCTGCACCTTCATTAATGAAGTCTATGAGGTGCTCAGTGATCCAGTTCAGCGCAGGGTTTATGATGATATTCATGGCTATTCTTTGACATCAATCAATCCTTTCATGGACGATTCTAGTCCGAAGGATCATGTTTTCGTCGATGAATTCAGCTGCATAGGCTGCAAAAACTGTGCCAATGTTGCCTGTGATGTGTTTGGAATTGAAGAAGACTTTGGAAGAGCCAGAGTATACAATCAGTTTGGGAACCCTGAATTAATTCAAACGGCTATTGAAAGTTGCCCTGTTGACTGCATTCATTGGACATCAGCTGCACAACTATCATTACTTGAAGACGAAATGCGCCGTATAGAAAGAGTCAATGTTGCTCTAATGCTTTCAGGAATGGGATCAGCATTAGGCGATGTTTTCAGAATGGAACAAGCGAGGTCGAGAATGATGAAGCAGAAAGGTTATGATAAAACAAATTCATACTGGGACAATCTTCGTGGAAAACCAAGAGACTACGAAAATTCAGAGGAGGAAGTAAAAGAAAGAGCTAAAAGAGCTGCAGCTGCTGCTAGAAAATGGAGGGAATACTCAAGGAAGGGTGGTGCTGTTGAGCCTTCCACAGTCAAACTTCCAGAGGAAACCTCTTCCACCAAGGACTAA

Protein sequence

>Msa0608940

MAQLLSPLYTEALKIHNPSLNLCRRSSWQMLQQKTATSPWRFATPSCKRRGFGRVKVATDQESFSTSDSVGAEDYYAVLGLLPDATPEQIKKAYYNCMKTCHPDLSGNDPETTNFCTFINEVYEVLSDPVQRRVYDDIHGYSLTSINPFMDDSSPKDHVFVDEFSCIGCKNCANVACDVFGIEEDFGRARVYNQFGNPELIQTAIESCPVDCIHWTSAAQLSLLEDEMRRIERVNVALMLSGMGSALGDVFRMEQARSRMMKQKGYDKTNSYWDNLRGKPRDYENSEEEVKERAKRAAAAARKWREYSRKGGAVEPSTVKLPEETSSTKD*