AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1278420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 60 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGGAGACCTATTCTTTC+TGG 0.087001 8_3:-14743410 Msa1278420:intron
AAAAGGAACTGCACTAATTT+TGG 0.093922 8_3:-14743878 Msa1278420:three_prime_UTR
TGTTCTCTTGTTTAGTTTCA+TGG 0.194002 8_3:-14748881 Msa1278420:CDS
TACAATAAATATTATTATTC+TGG 0.232160 8_3:+14742691 None:intergenic
GTTGTTGTGACTCTTGATTT+TGG 0.256583 8_3:+14748729 None:intergenic
TGGAATATCCTGTATATATA+TGG 0.257130 8_3:-14742734 Msa1278420:three_prime_UTR
ATTCTGGTACCTAATTATTC+TGG 0.276805 8_3:+14742707 None:intergenic
CATACTAATATCACAGATTT+AGG 0.277486 8_3:+14742798 None:intergenic
TATGGTTTACCAGAATAATT+AGG 0.306896 8_3:-14742716 Msa1278420:three_prime_UTR
TGCATTGAATTTGAAACCTC+TGG 0.316188 8_3:+14748762 None:intergenic
TTGTGGTGATGATGTTGTTT+TGG 0.338335 8_3:+14748797 None:intergenic
TAATTATAGAAGTGTATTAT+AGG 0.340237 8_3:-14742772 Msa1278420:three_prime_UTR
ACAGAACAATGTATTTCTTA+AGG 0.354819 8_3:-14748708 Msa1278420:CDS
TGGTATAGTTCTGAGCTTCT+AGG 0.369490 8_3:-14748680 Msa1278420:exon
CTTTGTTCAAGCAAATTCTA+AGG 0.371129 8_3:-14742930 Msa1278420:three_prime_UTR
GCTGTATCTTGTCCTTTCCT+TGG 0.372617 8_3:-14743427 Msa1278420:three_prime_UTR
CTGTGACAAAATAAGATCTT+TGG 0.390504 8_3:+14748546 None:intergenic
GTGCAAAGAACAAAGAAGAT+TGG 0.420669 8_3:+14748819 None:intergenic
CCATGACAGGATAAAGGAAT+TGG 0.428536 8_3:-14743464 Msa1278420:intron
TTGAAGTTGTCTAGGTGAAT+AGG 0.434653 8_3:-14742865 Msa1278420:three_prime_UTR
TTTGCTCCATGACAGGATAA+AGG 0.440137 8_3:-14743470 Msa1278420:intron
CTGGTAAACCATATATATAC+AGG 0.446381 8_3:+14742726 None:intergenic
CTTTCAGGCATGTGGAGCAT+TGG 0.446746 8_3:-14742969 Msa1278420:intron
CGAAGAGGATTGTGAATTTG+CGG 0.455959 8_3:-14743936 Msa1278420:three_prime_UTR
AAGGACTTCAACGTTTCAAA+AGG 0.458374 8_3:-14743895 Msa1278420:three_prime_UTR
TTGGTGATGGTTGTGAATAA+TGG 0.460048 8_3:+14748838 None:intergenic
ATAGGAGCTTATGATGTACT+TGG 0.461067 8_3:-14742754 Msa1278420:three_prime_UTR
TGAGATTTACCAGAAAGAAT+AGG 0.461380 8_3:+14743401 None:intergenic
TTTAAGCTAAATCCCTTGCT+TGG 0.486712 8_3:+14742907 None:intergenic
GTAAAATTTAAATACAAGGC+AGG 0.505184 8_3:-14748949 Msa1278420:CDS
TTATGTAAAATTTAAATACA+AGG 0.512231 8_3:-14748953 Msa1278420:CDS
TGTTAGAATCTAAGAACAAA+CGG 0.513330 8_3:+14748920 None:intergenic
ATGTATTTCTTAAGGTTGCA+TGG 0.514798 8_3:-14748700 Msa1278420:CDS
GAAGCTTCTTCTTCAACAGA+TGG 0.522340 8_3:+14748632 None:intergenic
TTCTATGGTGAACTCTATCA+AGG 0.526181 8_3:+14749137 None:intergenic
AGGTTTCAAATTCAATGCAA+TGG 0.527514 8_3:-14748758 Msa1278420:CDS
TACAACAGAAGCACGATCAA+TGG 0.528751 8_3:+14748589 None:intergenic
CACAATCAGGAAAAGTATGC+AGG 0.531502 8_3:-14743071 Msa1278420:intron
CAACTATGAATCTTATGAAG+TGG 0.531678 8_3:-14743838 Msa1278420:three_prime_UTR
CTAGGTGGTTGAAGTTGTCT+AGG 0.532781 8_3:-14742873 Msa1278420:three_prime_UTR
CCTGAAAACTTTCAGGCATG+TGG 0.535655 8_3:-14742977 Msa1278420:intron
TGTGAATTTGCGGATCCAGC+GGG 0.538988 8_3:-14743926 Msa1278420:three_prime_UTR
AACTATGAATCTTATGAAGT+GGG 0.541276 8_3:-14743837 Msa1278420:three_prime_UTR
AGGATAAAGGAATTGGTCAC+TGG 0.548719 8_3:-14743457 Msa1278420:three_prime_UTR
GCAAATTCTAAGGCCAAGCA+AGG 0.552018 8_3:-14742920 Msa1278420:three_prime_UTR
ATGAGATTGTGAAGTGAAAG+AGG 0.560023 8_3:+14742643 None:intergenic
CTTCTTCAACAGATGGAGAA+CGG 0.568481 8_3:+14748639 None:intergenic
CCAGAAAGAATAGGTCTCCA+AGG 0.570816 8_3:+14743410 None:intergenic
TTAAAATAACAGCTCTAGTG+TGG 0.582268 8_3:+14749026 None:intergenic
AAGAATAGGTCTCCAAGGAA+AGG 0.586808 8_3:+14743415 None:intergenic
GCTTAAAAGATTATGTGACT+AGG 0.588291 8_3:-14742891 Msa1278420:three_prime_UTR
AGAACAAAGAAGATTGGTGA+TGG 0.592330 8_3:+14748825 None:intergenic
CACATTGAATGCATACGAAG+AGG 0.600694 8_3:-14743951 Msa1278420:three_prime_UTR
TTGTGAATTTGCGGATCCAG+CGG 0.612444 8_3:-14743927 Msa1278420:three_prime_UTR
AGTCCTTTAAAAGATCCCGC+TGG 0.619834 8_3:+14743911 None:intergenic
TAATATATGCTGCAGCAACT+GGG 0.621935 8_3:-14743116 Msa1278420:intron
TAAAAGATTATGTGACTAGG+TGG 0.630969 8_3:-14742888 Msa1278420:three_prime_UTR
CAAATTCTAAGGCCAAGCAA+GGG 0.656167 8_3:-14742919 Msa1278420:three_prime_UTR
AAATTTAAATACAAGGCAGG+TGG 0.662495 8_3:-14748946 Msa1278420:CDS
ATGGTTTGAAGAAGTCTCTG+TGG 0.682726 8_3:+14748608 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGTAAAATTTAAATACA+AGG - chr8_3:14742844-14742863 Msa1278420:three_prime_UTR 10.0%
!!! CTGATTTTTTTTTTTTTTTA+TGG + chr8_3:14746494-14746513 None:intergenic 10.0%
!! TAAAAAAAAAAAATTGGAAA+AGG - chr8_3:14746699-14746718 Msa1278420:intron 10.0%
!!! AGTTTCTAAAAAAAAAAAAT+AGG - chr8_3:14747213-14747232 Msa1278420:intron 10.0%
!! TACAATAAATATTATTATTC+TGG + chr8_3:14749109-14749128 None:intergenic 10.0%
!! AAAAAAAATTGAATCTTCTA+TGG + chr8_3:14742678-14742697 None:intergenic 15.0%
!!! TATAGTTTCAATTTTAAGTA+TGG - chr8_3:14743375-14743394 Msa1278420:intron 15.0%
!! AATAACCTATGTAATAAAAT+GGG + chr8_3:14743635-14743654 None:intergenic 15.0%
!! AAATAACCTATGTAATAAAA+TGG + chr8_3:14743636-14743655 None:intergenic 15.0%
!! ATATAAAGAGAAAATATACT+TGG + chr8_3:14746269-14746288 None:intergenic 15.0%
!!! TATATTTTCTCTTTATATTC+AGG - chr8_3:14746271-14746290 Msa1278420:intron 15.0%
!!! TCAAATTTGTTAGTTTAATT+AGG + chr8_3:14747254-14747273 None:intergenic 15.0%
!!! GTATTTTGATTATAATCAAA+TGG - chr8_3:14747782-14747801 Msa1278420:intron 15.0%
!!! AATTTAATTTTGTTCATCAA+TGG + chr8_3:14748452-14748471 None:intergenic 15.0%
!!! TAATTATAGAAGTGTATTAT+AGG - chr8_3:14749025-14749044 Msa1278420:five_prime_UTR 15.0%
!! AAAAACAATTACAAGATATG+AGG + chr8_3:14744219-14744238 None:intergenic 20.0%
!!! CATATCTTGTAATTGTTTTT+TGG - chr8_3:14744219-14744238 Msa1278420:intron 20.0%
!! TATCTTCATGTTATATATGA+TGG + chr8_3:14744335-14744354 None:intergenic 20.0%
!!! ACGTTTTTAAACAAAAAACA+TGG - chr8_3:14745504-14745523 Msa1278420:intron 20.0%
!!! ATTGGTTTAATTTGTATGAT+TGG + chr8_3:14745569-14745588 None:intergenic 20.0%
!!! ATATCAATATCTTTTTGCTT+GGG + chr8_3:14746125-14746144 None:intergenic 20.0%
!! TTACAAATCCTTATATAGAA+AGG - chr8_3:14746324-14746343 Msa1278420:intron 20.0%
!! TTTGTATACCTTTCTATATA+AGG + chr8_3:14746335-14746354 None:intergenic 20.0%
!!! ATGTTTTTTATCCTTGAAAT+CGG + chr8_3:14746420-14746439 None:intergenic 20.0%
!!! TTTTCCAATTGTTTGTTTTA+GGG + chr8_3:14746548-14746567 None:intergenic 20.0%
!! ACAATATCATAAATCTCTAA+CGG - chr8_3:14747326-14747345 Msa1278420:intron 20.0%
!!! TACTACTCAATAATGTTTTA+GGG - chr8_3:14747614-14747633 Msa1278420:intron 20.0%
!!! TTTTGTATCAGTCATTATAT+AGG + chr8_3:14747731-14747750 None:intergenic 20.0%
!!! TATTATTTTGATACACAATC+AGG - chr8_3:14748713-14748732 Msa1278420:CDS 20.0%
!!! TATTTTGAAAATGATAACAC+TGG + chr8_3:14748791-14748810 None:intergenic 20.0%
! GTAAAATTTAAATACAAGGC+AGG - chr8_3:14742848-14742867 Msa1278420:three_prime_UTR 25.0%
! TGTTAGAATCTAAGAACAAA+CGG + chr8_3:14742880-14742899 None:intergenic 25.0%
! ACAGAACAATGTATTTCTTA+AGG - chr8_3:14743089-14743108 Msa1278420:three_prime_UTR 25.0%
! AGAAAACAAAGGAAACAAAT+TGG + chr8_3:14743317-14743336 None:intergenic 25.0%
!!! TTTTAAGTATGGTTGTAAAC+AGG - chr8_3:14743386-14743405 Msa1278420:intron 25.0%
! TTTAAGTATGGTTGTAAACA+GGG - chr8_3:14743387-14743406 Msa1278420:intron 25.0%
!!! TTTAGCTCATTTTCAACAAA+TGG + chr8_3:14743537-14743556 None:intergenic 25.0%
!!! GGTTTATAAACTTTTGAAGT+TGG + chr8_3:14743723-14743742 None:intergenic 25.0%
!!! CAAAATTTGCTAAGTTGAAA+GGG + chr8_3:14743802-14743821 None:intergenic 25.0%
!! CTTTCAACTTAGCAAATTTT+GGG - chr8_3:14743801-14743820 Msa1278420:intron 25.0%
! TAACATAATTCTTAAGCTGA+CGG - chr8_3:14743840-14743859 Msa1278420:three_prime_UTR 25.0%
!! AAATGATTTTATAGATGTGC+CGG + chr8_3:14743879-14743898 None:intergenic 25.0%
! TTGATCTGAACAAATTATTG+AGG + chr8_3:14743919-14743938 None:intergenic 25.0%
!! TATATGATGGTTGAGATTTT+AGG + chr8_3:14744322-14744341 None:intergenic 25.0%
!! TCAATTTTCTAAATTGCTTG+AGG + chr8_3:14744572-14744591 None:intergenic 25.0%
! TCAAGAAATTGTATGTGATA+TGG + chr8_3:14745052-14745071 None:intergenic 25.0%
! AAAGATACTTAGTAGCTAAA+AGG - chr8_3:14745271-14745290 Msa1278420:intron 25.0%
! AAGATACTTAGTAGCTAAAA+GGG - chr8_3:14745272-14745291 Msa1278420:intron 25.0%
! TTTAAAAACGTGTCTAAAAG+TGG + chr8_3:14745495-14745514 None:intergenic 25.0%
!! ACAAAGTCATTGTTATGTTT+TGG + chr8_3:14745905-14745924 None:intergenic 25.0%
! AAACTAACAATTCAATTGCT+GGG - chr8_3:14745934-14745953 Msa1278420:intron 25.0%
! AAATATCATTGTTCTTTCCT+TGG - chr8_3:14746009-14746028 Msa1278420:intron 25.0%
!!! ACTTTTTCCTATTATAACAG+TGG - chr8_3:14746065-14746084 Msa1278420:intron 25.0%
! TTTCATTCCACTGTTATAAT+AGG + chr8_3:14746075-14746094 None:intergenic 25.0%
!! AACTATCTTTTACCAAAGTT+TGG - chr8_3:14746093-14746112 Msa1278420:intron 25.0%
!! GATATCAATATCTTTTTGCT+TGG + chr8_3:14746126-14746145 None:intergenic 25.0%
!! TATACTTGGTAGCTTATAAT+GGG + chr8_3:14746255-14746274 None:intergenic 25.0%
!! ATATACTTGGTAGCTTATAA+TGG + chr8_3:14746256-14746275 None:intergenic 25.0%
!! AAGGATTTGTAATCTAGAAT+TGG + chr8_3:14746316-14746335 None:intergenic 25.0%
! ATGATTTCAAATTGGGAAAA+AGG - chr8_3:14746370-14746389 Msa1278420:intron 25.0%
! TGATTTCAAATTGGGAAAAA+GGG - chr8_3:14746371-14746390 Msa1278420:intron 25.0%
!!! TGTTTTAGGGTTTTAGAATT+GGG + chr8_3:14746535-14746554 None:intergenic 25.0%
!!! TTGTTTTAGGGTTTTAGAAT+TGG + chr8_3:14746536-14746555 None:intergenic 25.0%
! AAAACCCTAAAACAAACAAT+TGG - chr8_3:14746541-14746560 Msa1278420:intron 25.0%
!!! CTTTTCCAATTGTTTGTTTT+AGG + chr8_3:14746549-14746568 None:intergenic 25.0%
! CTAAAACAAACAATTGGAAA+AGG - chr8_3:14746547-14746566 Msa1278420:intron 25.0%
!!! TGTCTTTTTTACACATCATT+TGG - chr8_3:14746783-14746802 Msa1278420:intron 25.0%
!! GAGAAAAAGTTGATTACAAT+CGG - chr8_3:14747032-14747051 Msa1278420:intron 25.0%
! TGTTAAATGTAGTTAGAAGT+TGG + chr8_3:14747299-14747318 None:intergenic 25.0%
!!! ATTGCTATTTTAAGCACTTA+CGG + chr8_3:14747443-14747462 None:intergenic 25.0%
! TGCTTAAAATAGCAATACAA+AGG - chr8_3:14747447-14747466 Msa1278420:intron 25.0%
!! GTACTACTCAATAATGTTTT+AGG - chr8_3:14747613-14747632 Msa1278420:intron 25.0%
! CAAAATGAAGCTAATACAAT+TGG - chr8_3:14747746-14747765 Msa1278420:intron 25.0%
! TTATAATCAAATGGTTCACA+TGG - chr8_3:14747791-14747810 Msa1278420:intron 25.0%
! AACTATGAATCTTATGAAGT+GGG - chr8_3:14747960-14747979 Msa1278420:intron 25.0%
!! AATATAGAGTTTTGCAACTT+AGG - chr8_3:14748032-14748051 Msa1278420:intron 25.0%
!! TCAATCATTTTATTGAGTGT+TGG - chr8_3:14748267-14748286 Msa1278420:intron 25.0%
! CTCAATCTATTAGATATACA+TGG + chr8_3:14748429-14748448 None:intergenic 25.0%
! CATACTAATATCACAGATTT+AGG + chr8_3:14749002-14749021 None:intergenic 25.0%
! TGGAATATCCTGTATATATA+TGG - chr8_3:14749063-14749082 Msa1278420:five_prime_UTR 25.0%
! TATGGTTTACCAGAATAATT+AGG - chr8_3:14749081-14749100 Msa1278420:five_prime_UTR 25.0%
!!! CTTCATTTTTTTTTGTGACG+TGG - chr8_3:14742713-14742732 Msa1278420:three_prime_UTR 30.0%
!!! TTTTTTTTGTGACGTGGATT+TGG - chr8_3:14742719-14742738 Msa1278420:three_prime_UTR 30.0%
! TTAAAATAACAGCTCTAGTG+TGG + chr8_3:14742774-14742793 None:intergenic 30.0%
! CCACATAAAAATGGTGATTT+TGG + chr8_3:14742798-14742817 None:intergenic 30.0%
!! CCAAAATCACCATTTTTATG+TGG - chr8_3:14742795-14742814 Msa1278420:three_prime_UTR 30.0%
TAATGCTAGCCACATAAAAA+TGG + chr8_3:14742807-14742826 None:intergenic 30.0%
AAATTTAAATACAAGGCAGG+TGG - chr8_3:14742851-14742870 Msa1278420:three_prime_UTR 30.0%
! TGTTCTCTTGTTTAGTTTCA+TGG - chr8_3:14742916-14742935 Msa1278420:three_prime_UTR 30.0%
!! TCTGGATTTTTGTGTTATTG+TGG + chr8_3:14743020-14743039 None:intergenic 30.0%
ACAATAACACAAAAATCCAG+AGG - chr8_3:14743019-14743038 Msa1278420:intron 30.0%
AGGTTTCAAATTCAATGCAA+TGG - chr8_3:14743039-14743058 Msa1278420:intron 30.0%
ATGTATTTCTTAAGGTTGCA+TGG - chr8_3:14743097-14743116 Msa1278420:three_prime_UTR 30.0%
CTGTGACAAAATAAGATCTT+TGG + chr8_3:14743254-14743273 None:intergenic 30.0%
!!! CAAAGATCTTATTTTGTCAC+AGG - chr8_3:14743252-14743271 Msa1278420:intron 30.0%
!!! TGCTTTTTCTTGTCTTATGT+TGG - chr8_3:14743285-14743304 Msa1278420:intron 30.0%
TTAAGTATGGTTGTAAACAG+GGG - chr8_3:14743388-14743407 Msa1278420:intron 30.0%
! CTCATTTTCAACAAATGGAT+AGG + chr8_3:14743532-14743551 None:intergenic 30.0%
! GATCACCCATTTTATTACAT+AGG - chr8_3:14743627-14743646 Msa1278420:intron 30.0%
!! CCAAAATTTGCTAAGTTGAA+AGG + chr8_3:14743803-14743822 None:intergenic 30.0%
! CCTTTCAACTTAGCAAATTT+TGG - chr8_3:14743800-14743819 Msa1278420:intron 30.0%
GGCACATCTATAAAATCATT+TGG - chr8_3:14743878-14743897 Msa1278420:three_prime_UTR 30.0%
TGAAACACACTGTAAAAGTT+CGG - chr8_3:14743970-14743989 Msa1278420:intron 30.0%
TGATATTGATGTGTCTGATA+TGG + chr8_3:14744143-14744162 None:intergenic 30.0%
TTACAAGATATGAGGAATGA+GGG + chr8_3:14744211-14744230 None:intergenic 30.0%
ATTACAAGATATGAGGAATG+AGG + chr8_3:14744212-14744231 None:intergenic 30.0%
TCGCCAAATTTATCAAATGT+CGG - chr8_3:14744394-14744413 Msa1278420:intron 30.0%
GATCCGACATTTGATAAATT+TGG + chr8_3:14744400-14744419 None:intergenic 30.0%
! TTTTCTAAATTGCTTGAGGA+GGG + chr8_3:14744568-14744587 None:intergenic 30.0%
! ATTTTCTAAATTGCTTGAGG+AGG + chr8_3:14744569-14744588 None:intergenic 30.0%
TTACCAAAAAAACCACTAAC+AGG - chr8_3:14744664-14744683 Msa1278420:intron 30.0%
!!! AAACCTGTTAGTGGTTTTTT+TGG + chr8_3:14744670-14744689 None:intergenic 30.0%
GTATCGTTGTTGTCTATTAA+TGG + chr8_3:14744862-14744881 None:intergenic 30.0%
!! TTATGTTGATAGTGAAGGTT+TGG + chr8_3:14744953-14744972 None:intergenic 30.0%
AACCTTCACTATCAACATAA+CGG - chr8_3:14744953-14744972 Msa1278420:intron 30.0%
!! TGTTTCTGGTAAAGAACAAA+TGG + chr8_3:14744989-14745008 None:intergenic 30.0%
!!! TCTGTTTTGATTGATGAATC+TGG + chr8_3:14745015-14745034 None:intergenic 30.0%
! TAGCTACTAAGTATCTTTTG+AGG + chr8_3:14745269-14745288 None:intergenic 30.0%
GATTGAGTATAGTGAATCTA+AGG + chr8_3:14745547-14745566 None:intergenic 30.0%
!!! GTTGAAGACGAACTTTTTTT+AGG - chr8_3:14745652-14745671 Msa1278420:intron 30.0%
TTAGGATGATAGCTTGAAAT+TGG - chr8_3:14745702-14745721 Msa1278420:intron 30.0%
TGATTACCAATTGTTGGAAA+CGG + chr8_3:14745745-14745764 None:intergenic 30.0%
CAAACTAACAATTCAATTGC+TGG - chr8_3:14745933-14745952 Msa1278420:intron 30.0%
AGAAAAATGTTATGTCTCCA+AGG + chr8_3:14746029-14746048 None:intergenic 30.0%
GTGACTAATGAAGTCAATAA+GGG - chr8_3:14746158-14746177 Msa1278420:intron 30.0%
TGACTAATGAAGTCAATAAG+GGG - chr8_3:14746159-14746178 Msa1278420:intron 30.0%
TTGTGAAAATCTTATCAGAG+TGG - chr8_3:14746185-14746204 Msa1278420:intron 30.0%
! ATACTTGGTAGCTTATAATG+GGG + chr8_3:14746254-14746273 None:intergenic 30.0%
AACAAACAATTGGAAAAGGA+AGG - chr8_3:14746551-14746570 Msa1278420:intron 30.0%
! AAAAAATTGGAAAAGGCATG+TGG - chr8_3:14746706-14746725 Msa1278420:intron 30.0%
! AAAAATTGGAAAAGGCATGT+GGG - chr8_3:14746707-14746726 Msa1278420:intron 30.0%
!! TCATTTGGATGATTGATTTG+TGG - chr8_3:14746798-14746817 Msa1278420:intron 30.0%
!! GATGATTGATTTGTGGAAAA+AGG - chr8_3:14746805-14746824 Msa1278420:intron 30.0%
TATGACTATTGAGAGTTGTT+AGG - chr8_3:14746828-14746847 Msa1278420:intron 30.0%
!! CGTATCTTTTACTTTTGAAC+CGG - chr8_3:14747557-14747576 Msa1278420:intron 30.0%
!! GTATCTTTTACTTTTGAACC+GGG - chr8_3:14747558-14747577 Msa1278420:intron 30.0%
!!! CTCAATAATGTTTTAGGGAT+TGG - chr8_3:14747619-14747638 Msa1278420:intron 30.0%
! AAAAGGAACTGCACTAATTT+TGG - chr8_3:14747919-14747938 Msa1278420:intron 30.0%
CAACTATGAATCTTATGAAG+TGG - chr8_3:14747959-14747978 Msa1278420:intron 30.0%
!!! TAGGTTTTAAGTTGTAGTTG+CGG - chr8_3:14748051-14748070 Msa1278420:intron 30.0%
GTGTAATATCAAGAGTTACA+AGG + chr8_3:14748092-14748111 None:intergenic 30.0%
TTTAGCAACTCTATTCCTTT+AGG + chr8_3:14748207-14748226 None:intergenic 30.0%
TGAGATTTACCAGAAAGAAT+AGG + chr8_3:14748399-14748418 None:intergenic 30.0%
ACGAAAAATAAATCCAAGAG+AGG + chr8_3:14748526-14748545 None:intergenic 30.0%
! CGCGTTTTTAATAGAATATG+TGG - chr8_3:14748584-14748603 Msa1278420:three_prime_UTR 30.0%
TATTTAGCAGCAACAAAAAG+CGG - chr8_3:14748622-14748641 Msa1278420:three_prime_UTR 30.0%
CTAAATTCCTGAAAACTTTC+AGG - chr8_3:14748813-14748832 Msa1278420:CDS 30.0%
CTTTGTTCAAGCAAATTCTA+AGG - chr8_3:14748867-14748886 Msa1278420:CDS 30.0%
GCTTAAAAGATTATGTGACT+AGG - chr8_3:14748906-14748925 Msa1278420:CDS 30.0%
TAAAAGATTATGTGACTAGG+TGG - chr8_3:14748909-14748928 Msa1278420:CDS 30.0%
CTGGTAAACCATATATATAC+AGG + chr8_3:14749074-14749093 None:intergenic 30.0%
ATTCTGGTACCTAATTATTC+TGG + chr8_3:14749093-14749112 None:intergenic 30.0%
! GAAAGAGGAAGTTTTTAACA+TGG + chr8_3:14749142-14749161 None:intergenic 30.0%
TTCTATGGTGAACTCTATCA+AGG + chr8_3:14742663-14742682 None:intergenic 35.0%
!! TTGGTGATGGTTGTGAATAA+TGG + chr8_3:14742962-14742981 None:intergenic 35.0%
AGAACAAAGAAGATTGGTGA+TGG + chr8_3:14742975-14742994 None:intergenic 35.0%
GTGCAAAGAACAAAGAAGAT+TGG + chr8_3:14742981-14743000 None:intergenic 35.0%
!! TTGTGGTGATGATGTTGTTT+TGG + chr8_3:14743003-14743022 None:intergenic 35.0%
! TGCATTGAATTTGAAACCTC+TGG + chr8_3:14743038-14743057 None:intergenic 35.0%
! GTTGTTGTGACTCTTGATTT+TGG + chr8_3:14743071-14743090 None:intergenic 35.0%
! AGACAAGAAAAAGCATGTGA+TGG + chr8_3:14743280-14743299 None:intergenic 35.0%
!!! TTTCCTTTGTTTTCTGCGTT+TGG - chr8_3:14743322-14743341 Msa1278420:intron 35.0%
AATCCAAACGCAGAAAACAA+AGG + chr8_3:14743328-14743347 None:intergenic 35.0%
TCTGCGTTTGGATTTAGATT+TGG - chr8_3:14743334-14743353 Msa1278420:intron 35.0%
GTAATAAAATGGGTGATCAG+TGG + chr8_3:14743625-14743644 None:intergenic 35.0%
! TAAGTGCAACACATTTGCTA+TGG + chr8_3:14743744-14743763 None:intergenic 35.0%
AAAAGCTGCAAATGACTTTG+TGG - chr8_3:14743937-14743956 Msa1278420:three_prime_UTR 35.0%
AAAGCTGCAAATGACTTTGT+GGG - chr8_3:14743938-14743957 Msa1278420:three_prime_UTR 35.0%
TACAAGATATGAGGAATGAG+GGG + chr8_3:14744210-14744229 None:intergenic 35.0%
ATTTGAGTGTAGCGTTACAA+AGG + chr8_3:14744288-14744307 None:intergenic 35.0%
!! ACTAGGTTGATGACTTTGTA+TGG + chr8_3:14744457-14744476 None:intergenic 35.0%
ACAAGAGACAAGAATTGCTT+CGG + chr8_3:14744609-14744628 None:intergenic 35.0%
CAACTACAATTAGCACTTGT+TGG + chr8_3:14744709-14744728 None:intergenic 35.0%
ACAATGCACATAATAAGCAG+AGG - chr8_3:14744738-14744757 Msa1278420:intron 35.0%
CAATGCACATAATAAGCAGA+GGG - chr8_3:14744739-14744758 Msa1278420:intron 35.0%
! AATATGCAAGGTCGATTTAG+TGG + chr8_3:14744793-14744812 None:intergenic 35.0%
TGAGTTTGTCTAGCATTAGA+GGG + chr8_3:14744837-14744856 None:intergenic 35.0%
TTGAGTTTGTCTAGCATTAG+AGG + chr8_3:14744838-14744857 None:intergenic 35.0%
! CAAGATCCTTTTGAATGCTA+GGG - chr8_3:14745097-14745116 Msa1278420:intron 35.0%
! AAGATCCTTTTGAATGCTAG+GGG - chr8_3:14745098-14745117 Msa1278420:intron 35.0%
! GCAGTCATTAAGTTATTTCC+TGG - chr8_3:14745120-14745139 Msa1278420:intron 35.0%
TCTAATACAGTAGCTATCTC+TGG - chr8_3:14745150-14745169 Msa1278420:intron 35.0%
CTAATACAGTAGCTATCTCT+GGG - chr8_3:14745151-14745170 Msa1278420:intron 35.0%
TGAGTTGTTGGACACTTTAA+AGG + chr8_3:14745184-14745203 None:intergenic 35.0%
! GTTGCGACTCTTTATTTAAG+GGG + chr8_3:14745215-14745234 None:intergenic 35.0%
! GGTTGCGACTCTTTATTTAA+GGG + chr8_3:14745216-14745235 None:intergenic 35.0%
!!! ACTAAGTATCTTTTGAGGTG+TGG + chr8_3:14745264-14745283 None:intergenic 35.0%
! CAGCCTTAATACTTTGGTTT+GGG - chr8_3:14745352-14745371 Msa1278420:intron 35.0%
! GAACCCAAACCAAAGTATTA+AGG + chr8_3:14745358-14745377 None:intergenic 35.0%
TTCTTCTCATGTAGATTGTG+TGG + chr8_3:14745400-14745419 None:intergenic 35.0%
AAAACGTGTCTAAAAGTGGT+GGG + chr8_3:14745491-14745510 None:intergenic 35.0%
AAAAACGTGTCTAAAAGTGG+TGG + chr8_3:14745492-14745511 None:intergenic 35.0%
AACATGGCAAACAAAATGCT+AGG - chr8_3:14745520-14745539 Msa1278420:intron 35.0%
!!! GACGTCGATTTTGTAAGAAT+TGG + chr8_3:14745587-14745606 None:intergenic 35.0%
! CGTTGTTGATTACCAATTGT+TGG + chr8_3:14745751-14745770 None:intergenic 35.0%
AACAACGTTAATACCCTCAT+TGG - chr8_3:14745764-14745783 Msa1278420:intron 35.0%
ACATGAAGTTATACCCAACT+CGG + chr8_3:14745790-14745809 None:intergenic 35.0%
TTGGGTATAACTTCATGTTG+TGG - chr8_3:14745792-14745811 Msa1278420:intron 35.0%
! TAGAGACAAAGCTAGTTCTT+CGG + chr8_3:14745856-14745875 None:intergenic 35.0%
CATTAGTCACGTAAATGCTT+AGG + chr8_3:14746148-14746167 None:intergenic 35.0%
CGTGACTAATGAAGTCAATA+AGG - chr8_3:14746157-14746176 Msa1278420:intron 35.0%
AGGTATACAAACACTGAAAC+AGG - chr8_3:14746344-14746363 Msa1278420:intron 35.0%
GGTATACAAACACTGAAACA+GGG - chr8_3:14746345-14746364 Msa1278420:intron 35.0%
ACAGGGACATGATTTCAAAT+TGG - chr8_3:14746362-14746381 Msa1278420:intron 35.0%
CAGGGACATGATTTCAAATT+GGG - chr8_3:14746363-14746382 Msa1278420:intron 35.0%
! AAAATTGGAAAAGGCATGTG+GGG - chr8_3:14746708-14746727 Msa1278420:intron 35.0%
ACAAAGTAGTTTACAACCAG+GGG + chr8_3:14746766-14746785 None:intergenic 35.0%
GACAAAGTAGTTTACAACCA+GGG + chr8_3:14746767-14746786 None:intergenic 35.0%
AGACAAAGTAGTTTACAACC+AGG + chr8_3:14746768-14746787 None:intergenic 35.0%
ACTCGTAGTTACTGATAAGT+GGG - chr8_3:14746858-14746877 Msa1278420:intron 35.0%
! AACGTTTGTTGGGTTATGAT+TGG - chr8_3:14746898-14746917 Msa1278420:intron 35.0%
! ACGTTTGTTGGGTTATGATT+GGG - chr8_3:14746899-14746918 Msa1278420:intron 35.0%
GCAACAACAACAGAAAACAA+AGG + chr8_3:14747141-14747160 None:intergenic 35.0%
TCAGGAGCAATGTTGTAATA+TGG - chr8_3:14747378-14747397 Msa1278420:intron 35.0%
GCAATGCTGAAAACAAATAG+AGG - chr8_3:14747641-14747660 Msa1278420:intron 35.0%
AAGGACTTCAACGTTTCAAA+AGG - chr8_3:14747902-14747921 Msa1278420:intron 35.0%
! CACTAATTTTGGATCACTTC+TGG - chr8_3:14747930-14747949 Msa1278420:intron 35.0%
! TATGAAGTGGGAAGATTTTG+AGG - chr8_3:14747972-14747991 Msa1278420:intron 35.0%
!! AAGCAGTAGAAAAGTGTTCA+AGG + chr8_3:14748007-14748026 None:intergenic 35.0%
TTACACGCAACTGATGATAA+AGG - chr8_3:14748106-14748125 Msa1278420:intron 35.0%
GATGATAAAGGTTTCTGATG+CGG - chr8_3:14748118-14748137 Msa1278420:intron 35.0%
! CTCTATTCCTTTAGGTTACA+CGG + chr8_3:14748199-14748218 None:intergenic 35.0%
TGCTGCAGCATATATTAACA+TGG + chr8_3:14748678-14748697 None:intergenic 35.0%
TTAATATATGCTGCAGCAAC+TGG - chr8_3:14748680-14748699 Msa1278420:exon 35.0%
TAATATATGCTGCAGCAACT+GGG - chr8_3:14748681-14748700 Msa1278420:CDS 35.0%
!! TGCTTGAACAAAGCCATTTT+TGG + chr8_3:14748860-14748879 None:intergenic 35.0%
TTTAAGCTAAATCCCTTGCT+TGG + chr8_3:14748893-14748912 None:intergenic 35.0%
TTGAAGTTGTCTAGGTGAAT+AGG - chr8_3:14748932-14748951 Msa1278420:CDS 35.0%
ATAGGAGCTTATGATGTACT+TGG - chr8_3:14749043-14749062 Msa1278420:five_prime_UTR 35.0%
!! TGGTATAGTTCTGAGCTTCT+AGG - chr8_3:14743117-14743136 Msa1278420:intron 40.0%
CTTCTTCAACAGATGGAGAA+CGG + chr8_3:14743161-14743180 None:intergenic 40.0%
GAAGCTTCTTCTTCAACAGA+TGG + chr8_3:14743168-14743187 None:intergenic 40.0%
ATGGTTTGAAGAAGTCTCTG+TGG + chr8_3:14743192-14743211 None:intergenic 40.0%
! TACAACAGAAGCACGATCAA+TGG + chr8_3:14743211-14743230 None:intergenic 40.0%
ATCCAGACTTTAGGTACATG+TGG - chr8_3:14743414-14743433 Msa1278420:three_prime_UTR 40.0%
TCCAGACTTTAGGTACATGT+GGG - chr8_3:14743415-14743434 Msa1278420:three_prime_UTR 40.0%
GGATCTTTGTGCAAAACTTG+TGG + chr8_3:14743774-14743793 None:intergenic 40.0%
! TGCTAAGTTGAAAGGGCTTT+CGG + chr8_3:14743795-14743814 None:intergenic 40.0%
! TTTTATAGATGTGCCGGAAG+TGG + chr8_3:14743873-14743892 None:intergenic 40.0%
CATGAGCTTAATGCTAGGTT+TGG + chr8_3:14744007-14744026 None:intergenic 40.0%
AGTTGCATGAGCTTAATGCT+AGG + chr8_3:14744012-14744031 None:intergenic 40.0%
GTGGGAAGAACTTATATCAG+AGG + chr8_3:14744188-14744207 None:intergenic 40.0%
TTCTTCAATCACCCCAACAA+TGG - chr8_3:14744429-14744448 Msa1278420:intron 40.0%
!! TTTGTATGGTGCCATTGTTG+GGG + chr8_3:14744443-14744462 None:intergenic 40.0%
!! CTTTGTATGGTGCCATTGTT+GGG + chr8_3:14744444-14744463 None:intergenic 40.0%
!! ACTTTGTATGGTGCCATTGT+TGG + chr8_3:14744445-14744464 None:intergenic 40.0%
AGAATCATCTATTGCTCGAG+CGG + chr8_3:14744515-14744534 None:intergenic 40.0%
CAAGAGACAAGAATTGCTTC+GGG + chr8_3:14744608-14744627 None:intergenic 40.0%
AAGACTCACAAACCTGTTAG+TGG + chr8_3:14744679-14744698 None:intergenic 40.0%
!! GTCCGTTATGTTGATAGTGA+AGG + chr8_3:14744958-14744977 None:intergenic 40.0%
! GATGAATCTGGTGATGTTTC+TGG + chr8_3:14745003-14745022 None:intergenic 40.0%
! GCAAGATCCTTTTGAATGCT+AGG - chr8_3:14745096-14745115 Msa1278420:intron 40.0%
ACTGTATTAGATTGTGCTCC+AGG + chr8_3:14745141-14745160 None:intergenic 40.0%
GTGTCCAACAACTCAAGAAA+TGG - chr8_3:14745189-14745208 Msa1278420:intron 40.0%
! GGGTTGCGACTCTTTATTTA+AGG + chr8_3:14745217-14745236 None:intergenic 40.0%
CCATTTAGAGGAAGTGATGA+GGG + chr8_3:14745237-14745256 None:intergenic 40.0%
! CCAAAGTATTAAGGCTGCAT+TGG + chr8_3:14745349-14745368 None:intergenic 40.0%
CCAATGCAGCCTTAATACTT+TGG - chr8_3:14745346-14745365 Msa1278420:intron 40.0%
GCAGCCTTAATACTTTGGTT+TGG - chr8_3:14745351-14745370 Msa1278420:intron 40.0%
CATGTAGATTGTGTGGACAT+GGG + chr8_3:14745393-14745412 None:intergenic 40.0%
TCATGTAGATTGTGTGGACA+TGG + chr8_3:14745394-14745413 None:intergenic 40.0%
ATGGAAGAATGCTCGAAGAT+TGG + chr8_3:14745439-14745458 None:intergenic 40.0%
AAACGTGTCTAAAAGTGGTG+GGG + chr8_3:14745490-14745509 None:intergenic 40.0%
TGTCTACCAAAATCAGTCCA+AGG - chr8_3:14745609-14745628 Msa1278420:intron 40.0%
GTCTACCAAAATCAGTCCAA+GGG - chr8_3:14745610-14745629 Msa1278420:intron 40.0%
TTAGCAATTTCGCATACCCT+TGG + chr8_3:14745629-14745648 None:intergenic 40.0%
AAGCTTTACGTACCTCATCT+TGG - chr8_3:14745676-14745695 Msa1278420:intron 40.0%
TCATCCTAACATCCAAGATG+AGG + chr8_3:14745691-14745710 None:intergenic 40.0%
GGATGATAGCTTGAAATTGG+AGG - chr8_3:14745705-14745724 Msa1278420:intron 40.0%
! AGCTTTGTCTCTAGAAAGCA+CGG - chr8_3:14745863-14745882 Msa1278420:intron 40.0%
CTTGGGATTTCACCAAACTT+TGG + chr8_3:14746108-14746127 None:intergenic 40.0%
!! ACTGAAACACACCGATTTCA+AGG - chr8_3:14746406-14746425 Msa1278420:intron 40.0%
GAGTGAGAGTTGAGAAGAAA+CGG - chr8_3:14746607-14746626 Msa1278420:intron 40.0%
AGTGAGAGTTGAGAAGAAAC+GGG - chr8_3:14746608-14746627 Msa1278420:intron 40.0%
GACTCGTAGTTACTGATAAG+TGG - chr8_3:14746857-14746876 Msa1278420:intron 40.0%
ATCAGGCTCAAACGTTTGTT+GGG - chr8_3:14746888-14746907 Msa1278420:intron 40.0%
! CGTTTGTTGGGTTATGATTG+GGG - chr8_3:14746900-14746919 Msa1278420:intron 40.0%
! GTTTGTTGGGTTATGATTGG+GGG - chr8_3:14746901-14746920 Msa1278420:intron 40.0%
GTTAGAATAGAACAGCAACC+CGG + chr8_3:14747579-14747598 None:intergenic 40.0%
CACATTGAATGCATACGAAG+AGG - chr8_3:14747846-14747865 Msa1278420:intron 40.0%
CGAAGAGGATTGTGAATTTG+CGG - chr8_3:14747861-14747880 Msa1278420:intron 40.0%
TCATACATTTGCTCCATGAC+AGG - chr8_3:14748320-14748339 Msa1278420:intron 40.0%
TTTGCTCCATGACAGGATAA+AGG - chr8_3:14748327-14748346 Msa1278420:intron 40.0%
CCAATTCCTTTATCCTGTCA+TGG + chr8_3:14748336-14748355 None:intergenic 40.0%
CCATGACAGGATAAAGGAAT+TGG - chr8_3:14748333-14748352 Msa1278420:intron 40.0%
AGGATAAAGGAATTGGTCAC+TGG - chr8_3:14748340-14748359 Msa1278420:intron 40.0%
AAGAATAGGTCTCCAAGGAA+AGG + chr8_3:14748385-14748404 None:intergenic 40.0%
CATTTGACTGAAACCTCTCT+TGG - chr8_3:14748510-14748529 Msa1278420:intron 40.0%
! CACAATCAGGAAAAGTATGC+AGG - chr8_3:14748726-14748745 Msa1278420:CDS 40.0%
GCATTGGAATGTGCCAAAAA+TGG - chr8_3:14748844-14748863 Msa1278420:CDS 40.0%
!! CAAATTCTAAGGCCAAGCAA+GGG - chr8_3:14748878-14748897 Msa1278420:CDS 40.0%
AGTATGGTTGTAAACAGGGG+CGG - chr8_3:14743391-14743410 Msa1278420:intron 45.0%
CCAGACTTTAGGTACATGTG+GGG - chr8_3:14743416-14743435 Msa1278420:three_prime_UTR 45.0%
TCAACACTTGCAGTTGCTAC+CGG - chr8_3:14743686-14743705 Msa1278420:intron 45.0%
!!! GAAGTTGGCTTTGCTTTTGC+CGG + chr8_3:14743708-14743727 None:intergenic 45.0%
GCTTTCTTCCTTTGCGCATA+CGG - chr8_3:14744112-14744131 Msa1278420:intron 45.0%
AGATATGAGGAATGAGGGGT+GGG + chr8_3:14744206-14744225 None:intergenic 45.0%
AAGATATGAGGAATGAGGGG+TGG + chr8_3:14744207-14744226 None:intergenic 45.0%
TTGGGGTGATTGAAGAAGTG+GGG + chr8_3:14744426-14744445 None:intergenic 45.0%
GTTGGGGTGATTGAAGAAGT+GGG + chr8_3:14744427-14744446 None:intergenic 45.0%
TGTTGGGGTGATTGAAGAAG+TGG + chr8_3:14744428-14744447 None:intergenic 45.0%
ACCTAGTGAGAGTCCTAAAG+TGG - chr8_3:14744470-14744489 Msa1278420:intron 45.0%
CCTAGTGAGAGTCCTAAAGT+GGG - chr8_3:14744471-14744490 Msa1278420:intron 45.0%
GAATCATCTATTGCTCGAGC+GGG + chr8_3:14744514-14744533 None:intergenic 45.0%
! AAGCAGAGGGATTCTCGTTT+TGG - chr8_3:14744752-14744771 Msa1278420:intron 45.0%
GACAGAGCTAGCAATATGCA+AGG + chr8_3:14744805-14744824 None:intergenic 45.0%
TGTCTAGCATTAGAGGGCAA+GGG + chr8_3:14744831-14744850 None:intergenic 45.0%
TTGTCTAGCATTAGAGGGCA+AGG + chr8_3:14744832-14744851 None:intergenic 45.0%
CCCTCATCACTTCCTCTAAA+TGG - chr8_3:14745234-14745253 Msa1278420:intron 45.0%
GCCATTTAGAGGAAGTGATG+AGG + chr8_3:14745238-14745257 None:intergenic 45.0%
! AGGTGTGGTTTGCCATTTAG+AGG + chr8_3:14745249-14745268 None:intergenic 45.0%
!! GCATACCCTTGGACTGATTT+TGG + chr8_3:14745618-14745637 None:intergenic 45.0%
GGGTATGCGAAATTGCTAAG+AGG - chr8_3:14745630-14745649 Msa1278420:intron 45.0%
CGTACCTCATCTTGGATGTT+AGG - chr8_3:14745684-14745703 Msa1278420:intron 45.0%
CAATTGTTGGAAACGGATCC+AGG + chr8_3:14745738-14745757 None:intergenic 45.0%
CTGGATCCGTTTCCAACAAT+TGG - chr8_3:14745736-14745755 Msa1278420:intron 45.0%
ACTTCATGTTGTGGCTCACT+TGG - chr8_3:14745801-14745820 Msa1278420:intron 45.0%
CTTGGATGTCGAGTATTCGA+TGG - chr8_3:14745819-14745838 Msa1278420:intron 45.0%
! GCTTTGTCTCTAGAAAGCAC+GGG - chr8_3:14745864-14745883 Msa1278420:intron 45.0%
!! CTTATAATGGGGCCTTGTTC+AGG + chr8_3:14746243-14746262 None:intergenic 45.0%
CTCAACTCTCACTCACTCTA+AGG + chr8_3:14746601-14746620 None:intergenic 45.0%
ACACATGTTGTGGCTATGTG+AGG + chr8_3:14746740-14746759 None:intergenic 45.0%
AAGTAGTTTACAACCAGGGG+TGG + chr8_3:14746763-14746782 None:intergenic 45.0%
GTAGTTACTGATAAGTGGGC+AGG - chr8_3:14746862-14746881 Msa1278420:intron 45.0%
GATCAGGCTCAAACGTTTGT+TGG - chr8_3:14746887-14746906 Msa1278420:intron 45.0%
! TGTGGAATGGTTTGTGGAGA+TGG - chr8_3:14747075-14747094 Msa1278420:intron 45.0%
! AATGGTTTGTGGAGATGGCT+TGG - chr8_3:14747080-14747099 Msa1278420:intron 45.0%
!!! TGGAGATGGCTTGGTTTTTC+AGG - chr8_3:14747089-14747108 Msa1278420:intron 45.0%
!!! TGGCTTGGTTTTTCAGGTTG+TGG - chr8_3:14747095-14747114 Msa1278420:intron 45.0%
!!! GGCTTGGTTTTTCAGGTTGT+GGG - chr8_3:14747096-14747115 Msa1278420:intron 45.0%
!!! GCTTGGTTTTTCAGGTTGTG+GGG - chr8_3:14747097-14747116 Msa1278420:intron 45.0%
!!! CTTGGTTTTTCAGGTTGTGG+GGG - chr8_3:14747098-14747117 Msa1278420:intron 45.0%
GAGCACAACAAAAAACTCGC+GGG + chr8_3:14747163-14747182 None:intergenic 45.0%
GGAGCACAACAAAAAACTCG+CGG + chr8_3:14747164-14747183 None:intergenic 45.0%
AACACTTTGCTCCAACAGTG+TGG - chr8_3:14747354-14747373 Msa1278420:intron 45.0%
ATCTATTCCTCCCAACTCTC+AGG - chr8_3:14747817-14747836 Msa1278420:intron 45.0%
TGTGAGATCTCCTGAGAGTT+GGG + chr8_3:14747830-14747849 None:intergenic 45.0%
ATGTGAGATCTCCTGAGAGT+TGG + chr8_3:14747831-14747850 None:intergenic 45.0%
TTGTGAATTTGCGGATCCAG+CGG - chr8_3:14747870-14747889 Msa1278420:intron 45.0%
! GATCCAGCGGGATCTTTTAA+AGG - chr8_3:14747883-14747902 Msa1278420:intron 45.0%
! AGTCCTTTAAAAGATCCCGC+TGG + chr8_3:14747889-14747908 None:intergenic 45.0%
CTAAGCAGTTAAGGCTGCTT+AGG + chr8_3:14748176-14748195 None:intergenic 45.0%
GTTACACGGCTAAGCAGTTA+AGG + chr8_3:14748185-14748204 None:intergenic 45.0%
TGCTTAGCCGTGTAACCTAA+AGG - chr8_3:14748189-14748208 Msa1278420:intron 45.0%
GCTGTATCTTGTCCTTTCCT+TGG - chr8_3:14748370-14748389 Msa1278420:intron 45.0%
CCAGAAAGAATAGGTCTCCA+AGG + chr8_3:14748390-14748409 None:intergenic 45.0%
CCTTGGAGACCTATTCTTTC+TGG - chr8_3:14748387-14748406 Msa1278420:intron 45.0%
!! GCAGGTGAGAAAAGTGTTCA+TGG - chr8_3:14748744-14748763 Msa1278420:CDS 45.0%
! CCACATGCCTGAAAGTTTTC+AGG + chr8_3:14748823-14748842 None:intergenic 45.0%
CCTGAAAACTTTCAGGCATG+TGG - chr8_3:14748820-14748839 Msa1278420:CDS 45.0%
!! GCAAATTCTAAGGCCAAGCA+AGG - chr8_3:14748877-14748896 Msa1278420:CDS 45.0%
CTAGGTGGTTGAAGTTGTCT+AGG - chr8_3:14748924-14748943 Msa1278420:CDS 45.0%
!! TCTAATTAAAAAAAAAAAAT+TGG - chr8_3:14746693-14746712 Msa1278420:intron 5.0%
CCCCACATGTACCTAAAGTC+TGG + chr8_3:14743419-14743438 None:intergenic 50.0%
!! CCCACTTTAGGACTCTCACT+AGG + chr8_3:14744474-14744493 None:intergenic 50.0%
GGTGAGATAGAGACTGGTAG+TGG + chr8_3:14744547-14744566 None:intergenic 50.0%
GACTGCCCCTAGCATTCAAA+AGG + chr8_3:14745106-14745125 None:intergenic 50.0%
! GGGGCCATTTCTTGAGTTGT+TGG + chr8_3:14745196-14745215 None:intergenic 50.0%
! TGGGGGATGGTTTTCGTGAA+TGG + chr8_3:14745458-14745477 None:intergenic 50.0%
! AGTGGTGGGGATCACTTTGT+GGG + chr8_3:14745477-14745496 None:intergenic 50.0%
! AAGTGGTGGGGATCACTTTG+TGG + chr8_3:14745478-14745497 None:intergenic 50.0%
GAAATTGGAGGCCTAAGTCC+TGG - chr8_3:14745717-14745736 Msa1278420:intron 50.0%
TGGAAACGGATCCAGGACTT+AGG + chr8_3:14745731-14745750 None:intergenic 50.0%
AATACCCTCATTGGCCGAGT+TGG - chr8_3:14745773-14745792 Msa1278420:intron 50.0%
ATACCCTCATTGGCCGAGTT+GGG - chr8_3:14745774-14745793 Msa1278420:intron 50.0%
ATACCCAACTCGGCCAATGA+GGG + chr8_3:14745780-14745799 None:intergenic 50.0%
TATACCCAACTCGGCCAATG+AGG + chr8_3:14745781-14745800 None:intergenic 50.0%
CACTGAATCACGCCTGAACA+AGG - chr8_3:14746228-14746247 Msa1278420:intron 50.0%
TTATGATTGGGGGTTGCTGG+AGG - chr8_3:14746911-14746930 Msa1278420:intron 50.0%
ATTCACGACGAGTGTGTGCA+AGG + chr8_3:14747185-14747204 None:intergenic 50.0%
TTGCTCCAACAGTGTGGTTC+AGG - chr8_3:14747360-14747379 Msa1278420:intron 50.0%
TTGCTCCTGAACCACACTGT+TGG + chr8_3:14747368-14747387 None:intergenic 50.0%
TGTGAATTTGCGGATCCAGC+GGG - chr8_3:14747871-14747890 Msa1278420:intron 50.0%
CTTTCAGGCATGTGGAGCAT+TGG - chr8_3:14748828-14748847 Msa1278420:CDS 50.0%
TGACGGCGTAACACCACTTC+CGG - chr8_3:14743857-14743876 Msa1278420:three_prime_UTR 55.0%
TGGATGCACCGTATGCGCAA+AGG + chr8_3:14744123-14744142 None:intergenic 55.0%
CTCGTTGGGGTTCCCACTTT+AGG + chr8_3:14744486-14744505 None:intergenic 55.0%
GAGGAGGGTGAGATAGAGAC+TGG + chr8_3:14744553-14744572 None:intergenic 55.0%
TGGTGGGGATCACTTTGTGG+GGG + chr8_3:14745475-14745494 None:intergenic 55.0%
! GTGGTGGGGATCACTTTGTG+GGG + chr8_3:14745476-14745495 None:intergenic 55.0%
GATAAGTGGGCAGGTCGATC+AGG - chr8_3:14746871-14746890 Msa1278420:intron 55.0%
GGGTTATGATTGGGGGTTGC+TGG - chr8_3:14746908-14746927 Msa1278420:intron 55.0%
TCGGTGTAAATACACCCGCG+AGG - chr8_3:14747051-14747070 Msa1278420:intron 55.0%
CGGTGTAAATACACCCGCGA+GGG - chr8_3:14747052-14747071 Msa1278420:intron 55.0%
TAAATACACCCGCGAGGGTG+TGG - chr8_3:14747057-14747076 Msa1278420:intron 55.0%
AAACCATTCCACACCCTCGC+GGG + chr8_3:14747068-14747087 None:intergenic 55.0%
CAAACCATTCCACACCCTCG+CGG + chr8_3:14747069-14747088 None:intergenic 55.0%
! CGAGGGTGTGGAATGGTTTG+TGG - chr8_3:14747069-14747088 Msa1278420:intron 55.0%
!! TTTCAGGTTGTGGGGGTTGC+TGG - chr8_3:14747105-14747124 Msa1278420:intron 55.0%
ACTGCATCCCGCTTTGCAGT+CGG - chr8_3:14747471-14747490 Msa1278420:intron 55.0%
TACGTCTCCGACTGCAAAGC+GGG + chr8_3:14747481-14747500 None:intergenic 55.0%
CTACGTCTCCGACTGCAAAG+CGG + chr8_3:14747482-14747501 None:intergenic 55.0%
GAGATCTCCTGAGAGTTGGG+AGG + chr8_3:14747827-14747846 None:intergenic 55.0%
CAGGGGCGGATCCAGACTTT+AGG - chr8_3:14743405-14743424 Msa1278420:intron 60.0%
TCGAGCGGGTGACACTCGTT+GGG + chr8_3:14744500-14744519 None:intergenic 60.0%
GGGGATCACTTTGTGGGGGA+TGG + chr8_3:14745471-14745490 None:intergenic 60.0%
TTGAGAAGAAACGGGCGCGC+AGG - chr8_3:14746616-14746635 Msa1278420:intron 60.0%
TGAGAAGAAACGGGCGCGCA+GGG - chr8_3:14746617-14746636 Msa1278420:intron 60.0%
CCAGGGGTGGACACATGTTG+TGG + chr8_3:14746750-14746769 None:intergenic 60.0%
CCACAACATGTGTCCACCCC+TGG - chr8_3:14746747-14746766 Msa1278420:intron 60.0%
CGCTTTGCAGTCGGAGACGT+AGG - chr8_3:14747480-14747499 Msa1278420:intron 60.0%
CGAGCGGGTGACACTCGTTG+GGG + chr8_3:14744499-14744518 None:intergenic 65.0%
CTCGAGCGGGTGACACTCGT+TGG + chr8_3:14744501-14744520 None:intergenic 65.0%
! ACACCCGCGAGGGTGTGGAA+TGG - chr8_3:14747062-14747081 Msa1278420:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 14742658 14749161 14742658 ID=Msa1278420;Name=Msa1278420
chr8_3 mRNA 14742658 14749161 14742658 ID=Msa1278420-mRNA-1;Parent=Msa1278420;Name=Msa1278420-mRNA-1;_AED=0.20;_eAED=0.20;_QI=154|1|1|1|1|1|5|736|108
chr8_3 exon 14742658 14742984 14742658 ID=Msa1278420-mRNA-1:exon:5732;Parent=Msa1278420-mRNA-1
chr8_3 exon 14743072 14743123 14743072 ID=Msa1278420-mRNA-1:exon:5731;Parent=Msa1278420-mRNA-1
chr8_3 exon 14743411 14743477 14743411 ID=Msa1278420-mRNA-1:exon:5730;Parent=Msa1278420-mRNA-1
chr8_3 exon 14743826 14743980 14743826 ID=Msa1278420-mRNA-1:exon:5729;Parent=Msa1278420-mRNA-1
chr8_3 exon 14748546 14749161 14748546 ID=Msa1278420-mRNA-1:exon:5728;Parent=Msa1278420-mRNA-1
chr8_3 five_prime_UTR 14749008 14749161 14749008 ID=Msa1278420-mRNA-1:five_prime_utr;Parent=Msa1278420-mRNA-1
chr8_3 CDS 14748681 14749007 14748681 ID=Msa1278420-mRNA-1:cds;Parent=Msa1278420-mRNA-1
chr8_3 three_prime_UTR 14748546 14748680 14748546 ID=Msa1278420-mRNA-1:three_prime_utr;Parent=Msa1278420-mRNA-1
chr8_3 three_prime_UTR 14743826 14743980 14743826 ID=Msa1278420-mRNA-1:three_prime_utr;Parent=Msa1278420-mRNA-1
chr8_3 three_prime_UTR 14743411 14743477 14743411 ID=Msa1278420-mRNA-1:three_prime_utr;Parent=Msa1278420-mRNA-1
chr8_3 three_prime_UTR 14743072 14743123 14743072 ID=Msa1278420-mRNA-1:three_prime_utr;Parent=Msa1278420-mRNA-1
chr8_3 three_prime_UTR 14742658 14742984 14742658 ID=Msa1278420-mRNA-1:three_prime_utr;Parent=Msa1278420-mRNA-1
Gene Sequence

>Msa1278420

ATGTGGCTAGCATTAATTAGAAACTTAGATATTTATGTAAAATTTAAATACAAGGCAGGTGGCAACCGTTTGTTCTTAGATTCTAACAAAATCTTTCTAACGTTTGTTCTCTTGTTTAGTTTCATGGCATATTGTCTGCTATATCTTCCATTATTCACAACCATCACCAATCTTCTTTGTTCTTTGCACCAAAACAACATCATCACCACAATAACACAAAAATCCAGAGGTTTCAAATTCAATGCAATGGAACAAACCAAAATCAAGAGTCACAACAACAGAACAATGTATTTCTTAAGGTTGCATGGTATAGTTCTGAGCTTCTAG

Protein sequence

>Msa1278420

MWLALIRNLDIYVKFKYKAGGNRLFLDSNKIFLTFVLLFSFMAYCLLYLPLFTTITNLLCSLHQNNIITTITQKSRGFKFNAMEQTKIKSHNNRTMYFLRLHGIVLSF*