AlfalfaGEDB | Msa0595600

M. sativa cultivar zhongmu-4 / Msa0595600

KEGG: K14638
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0595600	RHN59580.1	86.614	127	17	0	1	127	1	127	2.82e-73	225

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0595600	sp\|Q9SK99\|PTR11_ARATH	71.287	101	29	0	11	111	9	109	4.75e-43	151

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0056450	Msa0595600	0.809006	2.341423e-50	-8.615850e-47
Msa0064110	Msa0595600	0.819081	1.400775e-52	-8.615850e-47
Msa0081650	Msa0595600	0.808775	2.623653e-50	-8.615850e-47
Msa0082440	Msa0595600	0.808966	2.388072e-50	-8.615850e-47
Msa0137870	Msa0595600	0.800218	1.597926e-48	-8.615850e-47
Msa0139700	Msa0595600	0.816235	6.138855e-52	-8.615850e-47
Msa0178510	Msa0595600	0.803473	3.427574e-49	-8.615850e-47
Msa0191890	Msa0595600	0.814627	1.399490e-51	-8.615850e-47
Msa0212040	Msa0595600	0.807563	4.754645e-50	-8.615850e-47
Msa0225220	Msa0595600	0.803122	4.052205e-49	-8.615850e-47
Msa0238230	Msa0595600	0.804821	1.796704e-49	-8.615850e-47
Msa0405130	Msa0595600	0.802162	6.393207e-49	-8.615850e-47
Msa0455740	Msa0595600	0.814312	1.642257e-51	-8.615850e-47
Msa0468410	Msa0595600	0.800911	1.154352e-48	-8.615850e-47
Msa0468800	Msa0595600	0.806168	9.375942e-50	-8.615850e-47
Msa0305330	Msa0595600	0.803806	2.923999e-49	-8.615850e-47
Msa0342010	Msa0595600	0.808042	3.760772e-50	-8.615850e-47
Msa0348530	Msa0595600	0.801564	8.483501e-49	-8.615850e-47
Msa0517090	Msa0595600	0.816555	5.205103e-52	-8.615850e-47
Msa0521010	Msa0595600	0.801809	7.557635e-49	-8.615850e-47
Msa0548150	Msa0595600	0.807981	3.876412e-50	-8.615850e-47
Msa0595600	Msa0615220	0.811782	5.892137e-51	-8.615850e-47
Msa0595600	Msa0661320	0.814649	1.383512e-51	-8.615850e-47
Msa0595600	Msa0689760	0.813487	2.497078e-51	-8.615850e-47
Msa0595600	Msa0704920	0.804033	2.623125e-49	-8.615850e-47
Msa0595600	Msa0716860	0.800963	1.126123e-48	-8.615850e-47
Msa0595600	Msa0832090	0.838516	2.744773e-57	-8.615850e-47
Msa0595600	Msa0868160	0.812519	4.070350e-51	-8.615850e-47
Msa0595600	Msa0900620	0.808237	3.418864e-50	-8.615850e-47
Msa0595600	Msa0926670	0.803632	3.176896e-49	-8.615850e-47
Msa0595600	Msa1010070	0.805535	1.273677e-49	-8.615850e-47
Msa0595600	Msa1033970	0.806429	8.262538e-50	-8.615850e-47
Msa0595600	Msa1080960	0.818855	1.576078e-52	-8.615850e-47
Msa0595600	Msa1115750	0.807945	3.944870e-50	-8.615850e-47
Msa0595600	Msa1142670	0.809169	2.160896e-50	-8.615850e-47
Msa0595600	Msa1307550	0.828131	1.065825e-54	-8.615850e-47
Msa0595600	Msa1349450	0.808667	2.767517e-50	-8.615850e-47
Msa0595600	Msa1352540	-0.811142	8.115435e-51	-8.615850e-47
Msa0595600	Msa1401270	0.812399	4.323037e-51	-8.615850e-47
Msa0595600	Msa1420250	0.807535	4.820211e-50	-8.615850e-47
Msa0595600	Msa1439710	0.807015	6.213217e-50	-8.615850e-47
Msa0595600	Msa1440740	0.803246	3.820512e-49	-8.615850e-47
Msa0595600	Msa1462360	0.800643	1.308816e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0595600	MtrunA17_Chr4g0014851	86.614	127	17	0	1	127	1	127	2.59e-77	225
Msa0595600	MtrunA17_Chr4g0014871	83.206	131	16	1	1	125	1	131	2.53e-69	217
Msa0595600	MtrunA17_Chr4g0014801	90.090	111	10	1	1	111	1	110	1.39e-63	202
Msa0595600	MtrunA17_Chr4g0014841	87.387	111	13	1	1	111	1	110	1.48e-61	197
Msa0595600	MtrunA17_Chr4g0014791	78.030	132	22	2	1	126	1	131	8.73e-61	195
Msa0595600	MtrunA17_Chr4g0014781	76.515	132	24	2	1	126	1	131	3.01e-58	188
Msa0595600	MtrunA17_Chr3g0077151	73.786	103	27	0	13	115	11	113	1.73e-46	157
Msa0595600	MtrunA17_Chr1g0166721	50.000	100	50	0	18	117	13	112	7.42e-33	112
Msa0595600	MtrunA17_Chr3g0112661	47.525	101	53	0	18	118	19	119	8.18e-33	112
Msa0595600	MtrunA17_Chr3g0114501	46.018	113	61	0	9	121	1	113	2.61e-32	119
Msa0595600	MtrunA17_Chr7g0261731	47.222	108	57	0	14	121	15	122	2.68e-31	114
Msa0595600	MtrunA17_Chr7g0261811	51.515	99	48	0	18	116	15	113	9.45e-31	114
Msa0595600	MtrunA17_Chr7g0261771	49.515	103	52	0	14	116	15	117	9.91e-31	114
Msa0595600	MtrunA17_Chr7g0261751	46.789	109	58	0	18	126	19	127	2.86e-30	113
Msa0595600	MtrunA17_Chr8g0375321	41.600	125	69	1	1	121	4	128	6.55e-30	112
Msa0595600	MtrunA17_Chr3g0112671	46.465	99	53	0	18	116	21	119	7.72e-30	112
Msa0595600	MtrunA17_Chr1g0166791	47.222	108	57	0	9	116	3	110	1.01e-29	112
Msa0595600	MtrunA17_Chr8g0375351	49.038	104	53	0	18	121	28	131	1.09e-29	111
Msa0595600	MtrunA17_Chr8g0375341	49.038	104	53	0	18	121	28	131	1.50e-29	111
Msa0595600	MtrunA17_Chr8g0375291	50.000	96	48	0	18	113	28	123	2.76e-29	110
Msa0595600	MtrunA17_Chr7g0261791	45.192	104	57	0	18	121	17	120	4.24e-29	110
Msa0595600	MtrunA17_Chr7g0261671	44.231	104	58	0	14	117	16	119	5.31e-29	102
Msa0595600	MtrunA17_Chr3g0112611	46.875	96	51	0	18	113	20	115	1.04e-28	108
Msa0595600	MtrunA17_Chr7g0261851	42.276	123	69	1	6	126	2	124	1.63e-28	108
Msa0595600	MtrunA17_Chr8g0375331	42.149	121	64	1	1	121	1	115	1.78e-28	108
Msa0595600	MtrunA17_Chr7g0240381	41.379	116	67	1	1	116	1	115	2.36e-28	108
Msa0595600	MtrunA17_Chr3g0104011	47.115	104	55	0	18	121	10	113	2.62e-28	107
Msa0595600	MtrunA17_Chr7g0241741	48.485	99	51	0	18	116	10	108	3.36e-28	107
Msa0595600	MtrunA17_Chr4g0008651	42.342	111	60	1	10	116	10	120	4.26e-28	107
Msa0595600	MtrunA17_Chr1g0166711	48.077	104	54	0	18	121	13	116	1.37e-27	105
Msa0595600	MtrunA17_Chr7g0261881	43.636	110	62	0	18	127	15	124	2.65e-27	105
Msa0595600	MtrunA17_Chr8g0375311	45.833	96	52	0	18	113	28	123	4.87e-27	104
Msa0595600	MtrunA17_Chr1g0187241	44.643	112	51	1	2	113	9	109	1.28e-26	103
Msa0595600	MtrunA17_Chr8g0353031	60.241	83	33	0	31	113	19	101	9.10e-26	100
Msa0595600	MtrunA17_Chr8g0375361	43.363	113	58	2	1	107	4	116	1.71e-25	100
Msa0595600	MtrunA17_Chr1g0166741	44.792	96	53	0	18	113	15	110	5.64e-25	98.6
Msa0595600	MtrunA17_Chr4g0005901	43.396	106	60	0	18	123	20	125	3.28e-24	96.3
Msa0595600	MtrunA17_Chr5g0400371	39.286	112	67	1	6	116	87	198	1.11e-22	92.0
Msa0595600	MtrunA17_Chr3g0082621	52.055	73	35	0	45	117	1	73	3.23e-22	84.0
Msa0595600	MtrunA17_Chr5g0399071	42.982	114	59	1	17	124	12	125	6.55e-22	89.7
Msa0595600	MtrunA17_Chr4g0056431	41.228	114	61	1	17	124	12	125	8.20e-22	89.4
Msa0595600	MtrunA17_Chr4g0063591	46.721	122	59	1	9	124	1	122	2.11e-21	88.2
Msa0595600	MtrunA17_Chr5g0399061	38.333	120	68	1	12	125	9	128	9.72e-21	86.7
Msa0595600	MtrunA17_Chr4g0054891	35.115	131	78	2	1	124	80	210	3.54e-20	84.7
Msa0595600	MtrunA17_Chr3g0142101	43.750	96	54	0	18	113	23	118	9.08e-20	83.6
Msa0595600	MtrunA17_Chr4g0011041	38.384	99	61	0	18	116	24	122	9.89e-20	83.6
Msa0595600	MtrunA17_Chr3g0142091	41.905	105	60	1	10	113	5	109	1.25e-19	83.2
Msa0595600	MtrunA17_Chr3g0142111	40.909	110	65	0	18	127	34	143	3.98e-19	80.9
Msa0595600	MtrunA17_Chr7g0217461	37.000	100	63	0	17	116	11	110	7.39e-19	81.3
Msa0595600	MtrunA17_Chr7g0255611	40.000	110	58	2	21	124	22	129	1.33e-17	77.4
Msa0595600	MtrunA17_Chr5g0415791	39.080	87	53	0	30	116	29	115	5.24e-17	75.9
Msa0595600	MtrunA17_Chr7g0218851	36.735	98	61	1	12	109	29	125	7.01e-17	75.5
Msa0595600	MtrunA17_Chr7g0240221	26.316	114	84	0	6	119	3	116	8.22e-17	70.9
Msa0595600	MtrunA17_Chr7g0240191	26.316	114	84	0	6	119	3	116	8.22e-17	70.9
Msa0595600	MtrunA17_Chr7g0240161	26.316	114	84	0	6	119	3	116	8.22e-17	70.9
Msa0595600	MtrunA17_Chr1g0166771	50.746	67	33	0	47	113	8	74	1.56e-16	74.3
Msa0595600	MtrunA17_Chr7g0255621	42.424	99	51	1	30	122	20	118	1.57e-16	74.3
Msa0595600	MtrunA17_Chr5g0422881	41.584	101	53	1	30	124	20	120	2.11e-16	73.9
Msa0595600	MtrunA17_Chr7g0240141	25.439	114	85	0	6	119	3	116	3.20e-16	69.3
Msa0595600	MtrunA17_Chr4g0060051	35.354	99	64	0	18	116	10	108	7.89e-16	68.6
Msa0595600	MtrunA17_Chr5g0439381	43.119	109	62	0	18	126	16	124	8.43e-16	72.4
Msa0595600	MtrunA17_Chr7g0255601	36.207	116	68	1	15	124	12	127	2.44e-15	70.9
Msa0595600	MtrunA17_Chr7g0214461	36.559	93	59	0	24	116	72	164	3.40e-15	70.5
Msa0595600	MtrunA17_Chr8g0362781	30.769	104	70	1	13	116	15	116	9.60e-15	69.3
Msa0595600	MtrunA17_Chr8g0379971	31.429	105	72	0	12	116	2	106	1.05e-14	69.3
Msa0595600	MtrunA17_Chr7g0214731	37.113	97	55	1	31	121	62	158	1.35e-14	68.9
Msa0595600	MtrunA17_Chr1g0157611	41.463	82	48	0	29	110	15	96	1.55e-14	68.6
Msa0595600	MtrunA17_Chr2g0276751	33.019	106	71	0	10	115	18	123	2.56e-14	68.2
Msa0595600	MtrunA17_Chr7g0235511	25.000	116	85	1	6	119	3	118	2.85e-14	64.3
Msa0595600	MtrunA17_Chr8g0362791	36.585	82	52	0	36	117	42	123	3.54e-14	64.7
Msa0595600	MtrunA17_Chr1g0157601	40.964	83	49	0	34	116	19	101	6.20e-14	67.0
Msa0595600	MtrunA17_Chr4g0059991	36.111	108	56	2	22	126	24	121	7.16e-14	67.0
Msa0595600	MtrunA17_Chr7g0240271	25.234	107	80	0	10	116	4	110	8.42e-14	66.6
Msa0595600	MtrunA17_Chr7g0240281	30.337	89	62	0	28	116	22	110	2.54e-13	65.1
Msa0595600	MtrunA17_Chr5g0415851	38.667	75	46	0	44	118	6	80	6.93e-13	60.1
Msa0595600	MtrunA17_Chr3g0133341	35.294	102	66	0	26	127	10	111	9.72e-13	63.5
Msa0595600	MtrunA17_Chr4g0059971	37.037	81	51	0	36	116	40	120	2.46e-12	62.4
Msa0595600	MtrunA17_Chr2g0325951	38.261	115	65	2	17	126	1	114	2.48e-12	62.4
Msa0595600	MtrunA17_Chr4g0060001	36.364	88	53	1	32	116	31	118	3.49e-12	62.0
Msa0595600	MtrunA17_Chr1g0213711	35.955	89	57	0	28	116	19	107	9.42e-12	60.8
Msa0595600	MtrunA17_Chr8g0390331	35.632	87	55	1	30	116	16	101	1.29e-11	60.5
Msa0595600	MtrunA17_Chr4g0059981	30.833	120	70	2	1	117	12	121	2.37e-11	59.7
Msa0595600	MtrunA17_Chr5g0415961	35.354	99	64	0	18	116	12	110	3.47e-11	59.3
Msa0595600	MtrunA17_Chr6g0451841	37.500	80	50	0	37	116	12	91	3.51e-11	59.3
Msa0595600	MtrunA17_Chr1g0147631	31.624	117	69	2	5	121	11	116	7.85e-11	58.2
Msa0595600	MtrunA17_Chr2g0325961	36.275	102	60	1	17	113	1	102	8.73e-11	58.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0595600	AT1G22570.1	71.287	101	29	0	11	111	9	109	4.83e-44	151
Msa0595600	AT1G22550.1	70.297	101	30	0	11	111	9	109	2.41e-43	149
Msa0595600	AT1G22540.1	73.958	96	25	0	21	116	19	114	1.09e-37	134
Msa0595600	AT1G72120.1	62.931	116	40	1	1	116	1	113	1.17e-36	131
Msa0595600	AT1G72125.1	66.990	103	34	0	14	116	11	113	3.83e-35	127
Msa0595600	AT3G53960.1	48.333	120	56	2	3	116	2	121	2.17e-32	119
Msa0595600	AT1G72140.1	53.636	110	51	0	14	123	16	125	2.92e-32	119
Msa0595600	AT2G37900.1	45.902	122	60	2	1	116	1	122	2.59e-30	114
Msa0595600	AT1G22570.2	75.362	69	17	0	43	111	4	72	1.04e-29	112
Msa0595600	AT2G02040.1	48.077	104	54	0	18	121	27	130	7.39e-28	107
Msa0595600	AT3G54450.1	53.763	93	42	1	30	122	11	102	9.56e-28	106
Msa0595600	AT3G54140.1	49.515	103	50	1	18	120	10	110	1.38e-27	106
Msa0595600	AT3G54140.2	49.515	103	50	1	18	120	10	110	1.38e-27	106
Msa0595600	AT2G40460.1	46.465	99	53	0	18	116	10	108	8.32e-27	103
Msa0595600	AT1G72130.1	52.632	114	49	1	12	125	10	118	7.74e-26	101
Msa0595600	AT5G46040.1	43.519	108	61	0	14	121	9	116	1.75e-25	100
Msa0595600	AT1G12110.1	47.154	123	59	2	8	124	3	125	3.08e-25	99.8
Msa0595600	AT5G01180.2	41.228	114	61	1	18	125	11	124	5.03e-25	99.0
Msa0595600	AT5G01180.3	41.228	114	61	1	18	125	11	124	5.03e-25	99.0
Msa0595600	AT5G01180.1	41.228	114	61	1	18	125	11	124	5.03e-25	99.0
Msa0595600	AT1G62200.3	47.778	90	47	0	18	107	52	141	1.07e-24	98.2
Msa0595600	AT1G62200.2	47.778	90	47	0	18	107	38	127	1.11e-24	98.2
Msa0595600	AT1G62200.1	47.778	90	47	0	18	107	38	127	1.18e-24	98.2
Msa0595600	AT2G02020.1	42.708	96	55	0	18	113	28	123	5.59e-24	95.9
Msa0595600	AT2G02020.2	39.286	112	67	1	3	113	12	123	5.63e-24	95.9
Msa0595600	AT5G46050.1	44.554	101	55	1	14	113	8	108	7.63e-24	95.9
Msa0595600	AT1G32450.1	37.288	118	72	1	1	116	4	121	4.85e-21	87.8
Msa0595600	AT4G21680.1	43.333	90	51	0	18	107	14	103	1.13e-19	84.0
Msa0595600	AT2G26690.1	49.000	100	51	0	17	116	9	108	2.63e-18	80.1
Msa0595600	AT1G69870.1	39.773	88	53	0	29	116	48	135	3.61e-17	76.6
Msa0595600	AT1G68570.1	44.444	90	44	1	41	124	32	121	1.42e-15	72.0
Msa0595600	AT1G68570.2	44.706	85	41	1	46	124	7	91	1.16e-14	69.3
Msa0595600	AT5G13400.1	39.773	88	52	1	21	107	52	139	1.70e-14	68.9
Msa0595600	AT5G62730.1	35.354	99	64	0	18	116	42	140	5.67e-14	67.4
Msa0595600	AT1G69860.1	32.955	88	59	0	36	123	22	109	1.80e-13	66.2
Msa0595600	AT3G21670.1	43.137	102	58	0	15	116	12	113	3.38e-13	65.5
Msa0595600	AT3G25260.1	36.842	95	60	0	22	116	11	105	4.17e-13	65.1
Msa0595600	AT1G59740.1	31.858	113	77	0	3	115	12	124	4.65e-13	65.1
Msa0595600	AT1G27080.1	36.782	87	55	0	30	116	12	98	5.62e-13	64.7
Msa0595600	AT1G18880.1	38.554	83	51	0	36	118	23	105	1.60e-12	63.5
Msa0595600	AT5G19640.1	33.684	95	63	0	33	127	60	154	1.61e-12	63.5
Msa0595600	AT3G25280.1	32.727	110	74	0	14	123	3	112	1.82e-12	63.2
Msa0595600	AT3G01350.1	39.744	78	47	0	34	111	9	86	2.24e-12	62.8
Msa0595600	AT5G14940.1	37.805	82	51	0	30	111	5	86	2.09e-11	60.1
Msa0595600	AT5G11570.1	39.535	86	51	1	41	126	22	106	2.82e-11	59.7
Msa0595600	AT1G33440.1	38.679	106	62	1	10	115	19	121	5.57e-11	58.9

Find 19 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCAGAGAGGATGTCATATTT+TGG	0.206086	4_2:+24811470	Msa0595600:CDS
TCAGATCCAAATCTGGTTAT+TGG	0.263593	4_2:+24810955	Msa0595600:CDS
CGTTCTGCTTGGTTTATCAT+AGG	0.320100	4_2:+24810978	Msa0595600:CDS
CGCTTCTCTCATCAATATCT+TGG	0.343153	4_2:+24811655	Msa0595600:CDS
GCTTCTCTACTTCCTCTGTT+AGG	0.391870	4_2:+24811584	Msa0595600:CDS
AGAACGCCAATAACCAGATT+TGG	0.403234	4_2:-24810961	None:intergenic
AACTTGATATCATATCTAAC+AGG	0.425289	4_2:+24811503	Msa0595600:CDS
CTGCTAAGAATGTCAATGTT+TGG	0.449566	4_2:+24811552	Msa0595600:CDS
CTGGTTATTGGCGTTCTGCT+TGG	0.452366	4_2:+24810967	Msa0595600:CDS
CAATTAGATGATCTTGTAGA+TGG	0.461691	4_2:+24810903	Msa0595600:CDS
AAGAATGTCAATGTTTGGTC+TGG	0.481539	4_2:+24811557	Msa0595600:CDS
CCTGCCATCAGATCCAAATC+TGG	0.493186	4_2:+24810948	Msa0595600:CDS
GTTGCAGTGCTTTGTTTGAG+TGG	0.521993	4_2:-24811527	None:intergenic
GATGGTGCTGTTGATTATAG+AGG	0.542039	4_2:+24810921	Msa0595600:CDS
ATAACCAGATTTGGATCTGA+TGG	0.545545	4_2:-24810952	None:intergenic
CCAGATTTGGATCTGATGGC+AGG	0.546146	4_2:-24810948	None:intergenic
TAGGTGTGGAGGTGGCAGAG+AGG	0.641536	4_2:+24811456	Msa0595600:intron
GCAATGAAAGCACCTAACAG+AGG	0.656054	4_2:-24811596	None:intergenic
GAGAAGCGAGTATGATTGTG+CGG	0.681455	4_2:-24811640	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAAATTACAAGTTTTATTTT+AGG	+	chr4_2:24811437-24811456	Msa0595600:intron	10.0%
!!!	AAAATTACAAGTTTTATTTT+AGG	+	chr4_2:24811437-24811456	Msa0595600:intron	10.0%
!!	ATCATATATTAAGTTTACTA+TGG	+	chr4_2:24811096-24811115	Msa0595600:intron	15.0%
!!	AAAAAAATAAGAACAAAGTA+AGG	-	chr4_2:24811122-24811141	None:intergenic	15.0%
!!!	TACTTTGTTCTTATTTTTTT+TGG	+	chr4_2:24811122-24811141	Msa0595600:intron	15.0%
!!	ATCATATATTAAGTTTACTA+TGG	+	chr4_2:24811096-24811115	Msa0595600:intron	15.0%
!!	AAAAAAATAAGAACAAAGTA+AGG	-	chr4_2:24811122-24811141	None:intergenic	15.0%
!!!	TACTTTGTTCTTATTTTTTT+TGG	+	chr4_2:24811122-24811141	Msa0595600:intron	15.0%
!!	GTAAACTTAATATATGATCA+TGG	-	chr4_2:24811094-24811113	None:intergenic	20.0%
!!!	GAATTTTTTGAATGATTCTT+AGG	-	chr4_2:24811192-24811211	None:intergenic	20.0%
!!!	AAAACTTGTAATTTTTGAGT+TGG	-	chr4_2:24811432-24811451	None:intergenic	20.0%
!!	GTAAACTTAATATATGATCA+TGG	-	chr4_2:24811094-24811113	None:intergenic	20.0%
!!!	GAATTTTTTGAATGATTCTT+AGG	-	chr4_2:24811192-24811211	None:intergenic	20.0%
!!!	AAAACTTGTAATTTTTGAGT+TGG	-	chr4_2:24811432-24811451	None:intergenic	20.0%
!!	TCAAAAAATTCGTAGTTTGT+CGG	+	chr4_2:24811201-24811220	Msa0595600:intron	25.0%
!!!	ATTTTGATTGTGTAAGTTGT+AGG	-	chr4_2:24811244-24811263	None:intergenic	25.0%
!	TAGAGTAAGTTCGTTAAAAA+TGG	-	chr4_2:24811329-24811348	None:intergenic	25.0%
!	TAACGAACTTACTCTAATAA+TGG	+	chr4_2:24811333-24811352	Msa0595600:intron	25.0%
!!!	TACAAGTTTTATTTTAGGTG+TGG	+	chr4_2:24811442-24811461	Msa0595600:intron	25.0%
!!!	ATGTCATATTTTGGGATTAA+GGG	+	chr4_2:24811479-24811498	Msa0595600:CDS	25.0%
!	AACTTGATATCATATCTAAC+AGG	+	chr4_2:24811503-24811522	Msa0595600:CDS	25.0%
!!	TCAAAAAATTCGTAGTTTGT+CGG	+	chr4_2:24811201-24811220	Msa0595600:intron	25.0%
!!!	ATTTTGATTGTGTAAGTTGT+AGG	-	chr4_2:24811244-24811263	None:intergenic	25.0%
!	TAGAGTAAGTTCGTTAAAAA+TGG	-	chr4_2:24811329-24811348	None:intergenic	25.0%
!	TAACGAACTTACTCTAATAA+TGG	+	chr4_2:24811333-24811352	Msa0595600:intron	25.0%
!!!	TACAAGTTTTATTTTAGGTG+TGG	+	chr4_2:24811442-24811461	Msa0595600:intron	25.0%
!!!	ATGTCATATTTTGGGATTAA+GGG	+	chr4_2:24811479-24811498	Msa0595600:CDS	25.0%
!	AACTTGATATCATATCTAAC+AGG	+	chr4_2:24811503-24811522	Msa0595600:CDS	25.0%
	CAATTAGATGATCTTGTAGA+TGG	+	chr4_2:24810903-24810922	Msa0595600:CDS	30.0%
	AGAAAATCAATTTCAGTTGG+TGG	-	chr4_2:24811150-24811169	None:intergenic	30.0%
	GGAAGAAAATCAATTTCAGT+TGG	-	chr4_2:24811153-24811172	None:intergenic	30.0%
!	CAAAAAATTCGTAGTTTGTC+GGG	+	chr4_2:24811202-24811221	Msa0595600:intron	30.0%
!!!	AAGTTTTATTTTAGGTGTGG+AGG	+	chr4_2:24811445-24811464	Msa0595600:intron	30.0%
!!!	GATGTCATATTTTGGGATTA+AGG	+	chr4_2:24811478-24811497	Msa0595600:CDS	30.0%
!!!	TTCATTGCTGATTCTTTTCT+TGG	+	chr4_2:24811611-24811630	Msa0595600:CDS	30.0%
	CAATTAGATGATCTTGTAGA+TGG	+	chr4_2:24810903-24810922	Msa0595600:CDS	30.0%
	AGAAAATCAATTTCAGTTGG+TGG	-	chr4_2:24811150-24811169	None:intergenic	30.0%
	GGAAGAAAATCAATTTCAGT+TGG	-	chr4_2:24811153-24811172	None:intergenic	30.0%
!	CAAAAAATTCGTAGTTTGTC+GGG	+	chr4_2:24811202-24811221	Msa0595600:intron	30.0%
!!!	AAGTTTTATTTTAGGTGTGG+AGG	+	chr4_2:24811445-24811464	Msa0595600:intron	30.0%
!!!	GATGTCATATTTTGGGATTA+AGG	+	chr4_2:24811478-24811497	Msa0595600:CDS	30.0%
!!!	TTCATTGCTGATTCTTTTCT+TGG	+	chr4_2:24811611-24811630	Msa0595600:CDS	30.0%
	ATAACCAGATTTGGATCTGA+TGG	-	chr4_2:24810955-24810974	None:intergenic	35.0%
	TCAGATCCAAATCTGGTTAT+TGG	+	chr4_2:24810955-24810974	Msa0595600:CDS	35.0%
!	TTTTCCTTTCAGCCAAAGAT+TGG	+	chr4_2:24811042-24811061	Msa0595600:intron	35.0%
	TTTCCTTTCAGCCAAAGATT+GGG	+	chr4_2:24811043-24811062	Msa0595600:intron	35.0%
	TTAGGCTAACATATTTGACG+AGG	-	chr4_2:24811174-24811193	None:intergenic	35.0%
!!!	TTTTATTTTAGGTGTGGAGG+TGG	+	chr4_2:24811448-24811467	Msa0595600:intron	35.0%
!	CAGAGAGGATGTCATATTTT+GGG	+	chr4_2:24811471-24811490	Msa0595600:CDS	35.0%
	CTGCTAAGAATGTCAATGTT+TGG	+	chr4_2:24811552-24811571	Msa0595600:CDS	35.0%
	AAGAATGTCAATGTTTGGTC+TGG	+	chr4_2:24811557-24811576	Msa0595600:CDS	35.0%
	ATAACCAGATTTGGATCTGA+TGG	-	chr4_2:24810955-24810974	None:intergenic	35.0%
	TCAGATCCAAATCTGGTTAT+TGG	+	chr4_2:24810955-24810974	Msa0595600:CDS	35.0%
!	TTTTCCTTTCAGCCAAAGAT+TGG	+	chr4_2:24811042-24811061	Msa0595600:intron	35.0%
	TTTCCTTTCAGCCAAAGATT+GGG	+	chr4_2:24811043-24811062	Msa0595600:intron	35.0%
	TTAGGCTAACATATTTGACG+AGG	-	chr4_2:24811174-24811193	None:intergenic	35.0%
!!!	TTTTATTTTAGGTGTGGAGG+TGG	+	chr4_2:24811448-24811467	Msa0595600:intron	35.0%
!	CAGAGAGGATGTCATATTTT+GGG	+	chr4_2:24811471-24811490	Msa0595600:CDS	35.0%
	CTGCTAAGAATGTCAATGTT+TGG	+	chr4_2:24811552-24811571	Msa0595600:CDS	35.0%
	AAGAATGTCAATGTTTGGTC+TGG	+	chr4_2:24811557-24811576	Msa0595600:CDS	35.0%
!!	GATGGTGCTGTTGATTATAG+AGG	+	chr4_2:24810921-24810940	Msa0595600:CDS	40.0%
	AGAACGCCAATAACCAGATT+TGG	-	chr4_2:24810964-24810983	None:intergenic	40.0%
	CGTTCTGCTTGGTTTATCAT+AGG	+	chr4_2:24810978-24810997	Msa0595600:CDS	40.0%
!	TGAACAAGCTTTAGTTGTGG+TGG	-	chr4_2:24811270-24811289	None:intergenic	40.0%
!	GTGTGAACAAGCTTTAGTTG+TGG	-	chr4_2:24811273-24811292	None:intergenic	40.0%
!	ACTAAAGCTTGTTCACACGA+AGG	+	chr4_2:24811275-24811294	Msa0595600:intron	40.0%
!	GCAGAGAGGATGTCATATTT+TGG	+	chr4_2:24811470-24811489	Msa0595600:CDS	40.0%
	CGCTTCTCTCATCAATATCT+TGG	+	chr4_2:24811655-24811674	Msa0595600:CDS	40.0%
!!	GATGGTGCTGTTGATTATAG+AGG	+	chr4_2:24810921-24810940	Msa0595600:CDS	40.0%
	AGAACGCCAATAACCAGATT+TGG	-	chr4_2:24810964-24810983	None:intergenic	40.0%
	CGTTCTGCTTGGTTTATCAT+AGG	+	chr4_2:24810978-24810997	Msa0595600:CDS	40.0%
!	TGAACAAGCTTTAGTTGTGG+TGG	-	chr4_2:24811270-24811289	None:intergenic	40.0%
!	GTGTGAACAAGCTTTAGTTG+TGG	-	chr4_2:24811273-24811292	None:intergenic	40.0%
!	ACTAAAGCTTGTTCACACGA+AGG	+	chr4_2:24811275-24811294	Msa0595600:intron	40.0%
!	GCAGAGAGGATGTCATATTT+TGG	+	chr4_2:24811470-24811489	Msa0595600:CDS	40.0%
	CGCTTCTCTCATCAATATCT+TGG	+	chr4_2:24811655-24811674	Msa0595600:CDS	40.0%
!	TTGTAGGCTTGTTCCTCCAA+AGG	-	chr4_2:24811228-24811247	None:intergenic	45.0%
	CACACGAAGGAAGTTCTTCT+CGG	+	chr4_2:24811288-24811307	Msa0595600:intron	45.0%
	ACACGAAGGAAGTTCTTCTC+GGG	+	chr4_2:24811289-24811308	Msa0595600:intron	45.0%
!!	GTTGCAGTGCTTTGTTTGAG+TGG	-	chr4_2:24811530-24811549	None:intergenic	45.0%
	GCTTCTCTACTTCCTCTGTT+AGG	+	chr4_2:24811584-24811603	Msa0595600:CDS	45.0%
!!	GCAATGAAAGCACCTAACAG+AGG	-	chr4_2:24811599-24811618	None:intergenic	45.0%
	GAGAAGCGAGTATGATTGTG+CGG	-	chr4_2:24811643-24811662	None:intergenic	45.0%
!	TTGTAGGCTTGTTCCTCCAA+AGG	-	chr4_2:24811228-24811247	None:intergenic	45.0%
	CACACGAAGGAAGTTCTTCT+CGG	+	chr4_2:24811288-24811307	Msa0595600:intron	45.0%
	ACACGAAGGAAGTTCTTCTC+GGG	+	chr4_2:24811289-24811308	Msa0595600:intron	45.0%
!!	GTTGCAGTGCTTTGTTTGAG+TGG	-	chr4_2:24811530-24811549	None:intergenic	45.0%
	GCTTCTCTACTTCCTCTGTT+AGG	+	chr4_2:24811584-24811603	Msa0595600:CDS	45.0%
!!	GCAATGAAAGCACCTAACAG+AGG	-	chr4_2:24811599-24811618	None:intergenic	45.0%
	GAGAAGCGAGTATGATTGTG+CGG	-	chr4_2:24811643-24811662	None:intergenic	45.0%
	CCAGATTTGGATCTGATGGC+AGG	-	chr4_2:24810951-24810970	None:intergenic	50.0%
	CCTGCCATCAGATCCAAATC+TGG	+	chr4_2:24810948-24810967	Msa0595600:CDS	50.0%
	CTGGTTATTGGCGTTCTGCT+TGG	+	chr4_2:24810967-24810986	Msa0595600:CDS	50.0%
	GCACCCAATCTTTGGCTGAA+AGG	-	chr4_2:24811049-24811068	None:intergenic	50.0%
	AGCCAAAGATTGGGTGCAGA+GGG	+	chr4_2:24811052-24811071	Msa0595600:intron	50.0%
	AACCCTCTGCACCCAATCTT+TGG	-	chr4_2:24811057-24811076	None:intergenic	50.0%
!	TTCGTAGTTTGTCGGGCCTT+TGG	+	chr4_2:24811209-24811228	Msa0595600:intron	50.0%
	CCAGATTTGGATCTGATGGC+AGG	-	chr4_2:24810951-24810970	None:intergenic	50.0%
	CCTGCCATCAGATCCAAATC+TGG	+	chr4_2:24810948-24810967	Msa0595600:CDS	50.0%
	CTGGTTATTGGCGTTCTGCT+TGG	+	chr4_2:24810967-24810986	Msa0595600:CDS	50.0%
	GCACCCAATCTTTGGCTGAA+AGG	-	chr4_2:24811049-24811068	None:intergenic	50.0%
	AGCCAAAGATTGGGTGCAGA+GGG	+	chr4_2:24811052-24811071	Msa0595600:intron	50.0%
	AACCCTCTGCACCCAATCTT+TGG	-	chr4_2:24811057-24811076	None:intergenic	50.0%
!	TTCGTAGTTTGTCGGGCCTT+TGG	+	chr4_2:24811209-24811228	Msa0595600:intron	50.0%
	CAGCCAAAGATTGGGTGCAG+AGG	+	chr4_2:24811051-24811070	Msa0595600:intron	55.0%
!	CAGAGGGTTCGTCTGAAGCA+GGG	+	chr4_2:24811068-24811087	Msa0595600:intron	55.0%
!	GTAGTTTGTCGGGCCTTTGG+AGG	+	chr4_2:24811212-24811231	Msa0595600:intron	55.0%
	CAGCCAAAGATTGGGTGCAG+AGG	+	chr4_2:24811051-24811070	Msa0595600:intron	55.0%
!	CAGAGGGTTCGTCTGAAGCA+GGG	+	chr4_2:24811068-24811087	Msa0595600:intron	55.0%
!	GTAGTTTGTCGGGCCTTTGG+AGG	+	chr4_2:24811212-24811231	Msa0595600:intron	55.0%
!	GCAGAGGGTTCGTCTGAAGC+AGG	+	chr4_2:24811067-24811086	Msa0595600:intron	60.0%
	TAGGTGTGGAGGTGGCAGAG+AGG	+	chr4_2:24811456-24811475	Msa0595600:intron	60.0%
!	GCAGAGGGTTCGTCTGAAGC+AGG	+	chr4_2:24811067-24811086	Msa0595600:intron	60.0%
	TAGGTGTGGAGGTGGCAGAG+AGG	+	chr4_2:24811456-24811475	Msa0595600:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	24810870	24811712	24810870	ID=Msa0595600;Name=Msa0595600
chr4_2	mRNA	24810870	24811712	24810870	ID=Msa0595600-mRNA-1;Parent=Msa0595600;Name=Msa0595600-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0\|0\|0\|1\|0\|0.5\|2\|0\|127
chr4_2	exon	24810870	24810999	24810870	ID=Msa0595600-mRNA-1:exon:6709;Parent=Msa0595600-mRNA-1
chr4_2	exon	24811459	24811712	24811459	ID=Msa0595600-mRNA-1:exon:6710;Parent=Msa0595600-mRNA-1
chr4_2	CDS	24810870	24810999	24810870	ID=Msa0595600-mRNA-1:cds;Parent=Msa0595600-mRNA-1
chr4_2	CDS	24811459	24811712	24811459	ID=Msa0595600-mRNA-1:cds;Parent=Msa0595600-mRNA-1

Gene Sequence

>Msa0595600

ATGGAGGAATACAATGAAGTTTTGTTAGAAGCTCAATTAGATGATCTTGTAGATGGTGCTGTTGATTATAGAGGACAACCTGCCATCAGATCCAAATCTGGTTATTGGCGTTCTGCTTGGTTTATCATAGGTGTGGAGGTGGCAGAGAGGATGTCATATTTTGGGATTAAGGGAAACTTGATATCATATCTAACAGGACCACTCAAACAAAGCACTGCAACAGCTGCTAAGAATGTCAATGTTTGGTCTGGAACAGCTTCTCTACTTCCTCTGTTAGGTGCTTTCATTGCTGATTCTTTTCTTGGACGCTACCGCACAATCATACTCGCTTCTCTCATCAATATCTTGGTTAGTTCAATTCTTCCCTTTCTTACCTCTTTTTAG

Protein sequence

>Msa0595600

MEEYNEVLLEAQLDDLVDGAVDYRGQPAIRSKSGYWRSAWFIIGVEVAERMSYFGIKGNLISYLTGPLKQSTATAAKNVNVWSGTASLLPLLGAFIADSFLGRYRTIILASLINILVSSILPFLTSF*