Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115750 | XP_003625185.1 | 92.440 | 291 | 6 | 1 | 1 | 291 | 1 | 275 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115750 | sp|Q9FL54|DNAJ6_ARATH | 61.074 | 298 | 88 | 5 | 1 | 286 | 1 | 282 | 2.13e-111 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115750 | A2Q3D3 | 92.440 | 291 | 6 | 1 | 1 | 291 | 1 | 275 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007990 | Msa1115750 | 0.800482 | 1.411993e-48 | -8.615850e-47 |
| Msa0015390 | Msa1115750 | 0.818849 | 1.581644e-52 | -8.615850e-47 |
| Msa0026910 | Msa1115750 | 0.811307 | 7.474749e-51 | -8.615850e-47 |
| Msa0615010 | Msa1115750 | 0.801700 | 7.957845e-49 | -8.615850e-47 |
| Msa0624470 | Msa1115750 | 0.804833 | 1.786869e-49 | -8.615850e-47 |
| Msa0685900 | Msa1115750 | 0.801177 | 1.018278e-48 | -8.615850e-47 |
| Msa0717890 | Msa1115750 | 0.810335 | 1.213373e-50 | -8.615850e-47 |
| Msa0731940 | Msa1115750 | 0.803484 | 3.410938e-49 | -8.615850e-47 |
| Msa0832340 | Msa1115750 | 0.808466 | 3.054048e-50 | -8.615850e-47 |
| Msa0131770 | Msa1115750 | 0.824420 | 8.152517e-54 | -8.615850e-47 |
| Msa0149300 | Msa1115750 | 0.804535 | 2.062204e-49 | -8.615850e-47 |
| Msa0218460 | Msa1115750 | 0.806463 | 8.124717e-50 | -8.615850e-47 |
| Msa0218810 | Msa1115750 | 0.820677 | 6.046302e-53 | -8.615850e-47 |
| Msa0405130 | Msa1115750 | 0.817989 | 2.477268e-52 | -8.615850e-47 |
| Msa0411390 | Msa1115750 | 0.809889 | 1.513653e-50 | -8.615850e-47 |
| Msa0413680 | Msa1115750 | 0.806513 | 7.930009e-50 | -8.615850e-47 |
| Msa0455760 | Msa1115750 | 0.803983 | 2.687133e-49 | -8.615850e-47 |
| Msa1002360 | Msa1115750 | 0.807098 | 5.966333e-50 | -8.615850e-47 |
| Msa1032850 | Msa1115750 | 0.805498 | 1.296799e-49 | -8.615850e-47 |
| Msa1052830 | Msa1115750 | 0.808714 | 2.704466e-50 | -8.615850e-47 |
| Msa0258310 | Msa1115750 | 0.802047 | 6.753377e-49 | -8.615850e-47 |
| Msa0292930 | Msa1115750 | 0.804474 | 2.122680e-49 | -8.615850e-47 |
| Msa0348530 | Msa1115750 | 0.815314 | 9.849134e-52 | -8.615850e-47 |
| Msa0358890 | Msa1115750 | 0.812059 | 5.128198e-51 | -8.615850e-47 |
| Msa1115750 | Msa1121490 | 0.827794 | 1.284958e-54 | -8.615850e-47 |
| Msa1115750 | Msa1137570 | 0.816898 | 4.360380e-52 | -8.615850e-47 |
| Msa1115750 | Msa1193290 | 0.825049 | 5.793113e-54 | -8.615850e-47 |
| Msa1115750 | Msa1240510 | 0.809197 | 2.130842e-50 | -8.615850e-47 |
| Msa1115750 | Msa1285550 | 0.814751 | 1.313282e-51 | -8.615850e-47 |
| Msa1115750 | Msa1353470 | 0.850436 | 1.700577e-60 | -8.615850e-47 |
| Msa1115750 | Msa1418260 | 0.801123 | 1.044602e-48 | -8.615850e-47 |
| Msa1115750 | Msa1466540 | 0.828757 | 7.526747e-55 | -8.615850e-47 |
| Msa0548150 | Msa1115750 | 0.806170 | 9.367606e-50 | -8.615850e-47 |
| Msa0595600 | Msa1115750 | 0.807945 | 3.944870e-50 | -8.615850e-47 |
| Msa0842710 | Msa1115750 | 0.807308 | 5.386391e-50 | -8.615850e-47 |
| Msa0870610 | Msa1115750 | 0.805073 | 1.592034e-49 | -8.615850e-47 |
| Msa0936390 | Msa1115750 | 0.828718 | 7.691249e-55 | -8.615850e-47 |
| Msa0962840 | Msa1115750 | 0.803838 | 2.880153e-49 | -8.615850e-47 |
| Msa0969450 | Msa1115750 | 0.802568 | 5.273753e-49 | -8.615850e-47 |
| Msa0969520 | Msa1115750 | 0.823354 | 1.449101e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115750 | MtrunA17_Chr7g0258061 | 92.440 | 291 | 6 | 1 | 1 | 291 | 1 | 275 | 0.0 | 540 |
| Msa1115750 | MtrunA17_Chr1g0173931 | 70.968 | 279 | 64 | 2 | 10 | 287 | 26 | 288 | 2.91e-133 | 379 |
| Msa1115750 | MtrunA17_Chr7g0269841 | 53.731 | 67 | 31 | 0 | 21 | 87 | 25 | 91 | 8.11e-16 | 76.6 |
| Msa1115750 | MtrunA17_Chr3g0087741 | 53.731 | 67 | 31 | 0 | 21 | 87 | 88 | 154 | 6.95e-15 | 74.3 |
| Msa1115750 | MtrunA17_Chr4g0010781 | 52.239 | 67 | 32 | 0 | 21 | 87 | 85 | 151 | 2.40e-13 | 69.7 |
| Msa1115750 | MtrunA17_Chr4g0040501 | 49.231 | 65 | 32 | 1 | 24 | 87 | 6 | 70 | 3.73e-13 | 68.9 |
| Msa1115750 | MtrunA17_Chr2g0282741 | 46.154 | 65 | 34 | 1 | 24 | 87 | 6 | 70 | 9.03e-13 | 67.8 |
| Msa1115750 | MtrunA17_Chr7g0271891 | 49.231 | 65 | 29 | 2 | 24 | 84 | 18 | 82 | 1.06e-12 | 65.1 |
| Msa1115750 | MtrunA17_Chr3g0138471 | 44.615 | 65 | 35 | 1 | 24 | 87 | 6 | 70 | 1.18e-12 | 67.4 |
| Msa1115750 | MtrunA17_Chr2g0282761 | 47.692 | 65 | 33 | 1 | 24 | 87 | 6 | 70 | 2.80e-12 | 66.2 |
| Msa1115750 | MtrunA17_Chr2g0324921 | 46.154 | 65 | 34 | 1 | 24 | 87 | 6 | 70 | 3.42e-12 | 65.9 |
| Msa1115750 | MtrunA17_Chr1g0159491 | 43.750 | 64 | 36 | 0 | 24 | 87 | 8 | 71 | 6.06e-12 | 60.5 |
| Msa1115750 | MtrunA17_Chr2g0295821 | 48.649 | 74 | 33 | 2 | 24 | 95 | 106 | 176 | 6.08e-12 | 65.5 |
| Msa1115750 | MtrunA17_Chr1g0209551 | 50.000 | 64 | 32 | 0 | 24 | 87 | 18 | 81 | 1.02e-11 | 65.1 |
| Msa1115750 | MtrunA17_Chr4g0006391 | 43.077 | 65 | 36 | 1 | 24 | 87 | 6 | 70 | 1.53e-11 | 63.9 |
| Msa1115750 | MtrunA17_Chr7g0242951 | 50.000 | 64 | 31 | 1 | 24 | 87 | 29 | 91 | 1.74e-11 | 64.3 |
| Msa1115750 | MtrunA17_Chr6g0478651 | 49.275 | 69 | 30 | 2 | 21 | 87 | 67 | 132 | 2.99e-11 | 63.5 |
| Msa1115750 | MtrunA17_Chr8g0352451 | 47.059 | 68 | 36 | 0 | 20 | 87 | 70 | 137 | 3.69e-11 | 63.2 |
| Msa1115750 | MtrunA17_Chr5g0393371 | 46.875 | 64 | 34 | 0 | 24 | 87 | 8 | 71 | 6.90e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115750 | AT3G12170.1 | 67.954 | 259 | 66 | 2 | 20 | 277 | 9 | 251 | 5.03e-124 | 355 |
| Msa1115750 | AT3G12170.2 | 67.954 | 259 | 66 | 2 | 20 | 277 | 45 | 287 | 3.23e-123 | 354 |
| Msa1115750 | AT5G06910.1 | 61.074 | 298 | 88 | 5 | 1 | 286 | 1 | 282 | 2.17e-112 | 326 |
| Msa1115750 | AT5G48030.1 | 55.224 | 67 | 30 | 0 | 21 | 87 | 93 | 159 | 1.39e-14 | 73.9 |
| Msa1115750 | AT3G62600.1 | 50.746 | 67 | 33 | 0 | 21 | 87 | 25 | 91 | 2.83e-14 | 72.4 |
| Msa1115750 | AT1G56300.2 | 49.275 | 69 | 31 | 2 | 20 | 84 | 11 | 79 | 5.83e-14 | 67.8 |
| Msa1115750 | AT1G56300.1 | 49.275 | 69 | 31 | 2 | 20 | 84 | 11 | 79 | 5.89e-14 | 68.6 |
| Msa1115750 | AT1G68370.1 | 37.963 | 108 | 52 | 2 | 24 | 128 | 19 | 114 | 7.04e-14 | 71.6 |
| Msa1115750 | AT5G03160.1 | 50.685 | 73 | 35 | 1 | 20 | 91 | 368 | 440 | 1.50e-13 | 70.9 |
| Msa1115750 | AT5G01390.3 | 45.455 | 66 | 35 | 1 | 23 | 87 | 5 | 70 | 2.31e-13 | 68.6 |
| Msa1115750 | AT4G39150.3 | 53.125 | 64 | 30 | 0 | 24 | 87 | 8 | 71 | 2.78e-13 | 69.7 |
| Msa1115750 | AT4G39150.1 | 53.125 | 64 | 30 | 0 | 24 | 87 | 8 | 71 | 2.78e-13 | 69.7 |
| Msa1115750 | AT4G39150.2 | 53.125 | 64 | 30 | 0 | 24 | 87 | 8 | 71 | 2.78e-13 | 69.7 |
| Msa1115750 | AT5G01390.4 | 45.455 | 66 | 35 | 1 | 23 | 87 | 5 | 70 | 4.16e-13 | 67.8 |
| Msa1115750 | AT5G01390.2 | 45.455 | 66 | 35 | 1 | 23 | 87 | 5 | 70 | 4.38e-13 | 68.6 |
| Msa1115750 | AT5G01390.1 | 45.455 | 66 | 35 | 1 | 23 | 87 | 5 | 70 | 6.76e-13 | 68.6 |
| Msa1115750 | AT1G59980.2 | 44.118 | 68 | 38 | 0 | 20 | 87 | 21 | 88 | 9.87e-13 | 68.2 |
| Msa1115750 | AT1G59980.1 | 36.957 | 92 | 49 | 1 | 20 | 102 | 21 | 112 | 1.25e-12 | 68.2 |
| Msa1115750 | AT4G28480.2 | 44.615 | 65 | 35 | 1 | 24 | 87 | 6 | 70 | 1.57e-12 | 67.0 |
| Msa1115750 | AT2G21510.2 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 1.76e-12 | 67.4 |
| Msa1115750 | AT2G21510.4 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 1.76e-12 | 67.4 |
| Msa1115750 | AT2G21510.3 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 1.85e-12 | 67.4 |
| Msa1115750 | AT2G21510.1 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 1.85e-12 | 67.4 |
| Msa1115750 | AT2G21510.5 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 2.39e-12 | 66.6 |
| Msa1115750 | AT4G28480.1 | 44.615 | 65 | 35 | 1 | 24 | 87 | 6 | 70 | 2.55e-12 | 67.0 |
| Msa1115750 | AT3G14200.1 | 45.238 | 84 | 38 | 3 | 20 | 96 | 10 | 92 | 2.73e-12 | 65.5 |
| Msa1115750 | AT3G08910.1 | 44.615 | 65 | 35 | 1 | 24 | 87 | 6 | 70 | 2.85e-12 | 66.6 |
| Msa1115750 | AT5G16650.1 | 42.105 | 76 | 44 | 0 | 13 | 88 | 2 | 77 | 3.80e-12 | 62.8 |
| Msa1115750 | AT5G25530.2 | 46.154 | 65 | 34 | 1 | 24 | 87 | 6 | 70 | 3.86e-12 | 66.2 |
| Msa1115750 | AT5G49060.2 | 48.571 | 70 | 31 | 2 | 24 | 91 | 101 | 167 | 1.23e-11 | 64.7 |
| Msa1115750 | AT5G49060.1 | 48.571 | 70 | 31 | 2 | 24 | 91 | 101 | 167 | 1.23e-11 | 64.7 |
| Msa1115750 | AT5G16650.2 | 42.105 | 76 | 44 | 0 | 13 | 88 | 2 | 77 | 1.25e-11 | 62.4 |
| Msa1115750 | AT2G20560.1 | 43.077 | 65 | 36 | 1 | 24 | 87 | 6 | 70 | 1.72e-11 | 64.3 |
| Msa1115750 | AT1G77020.1 | 48.438 | 64 | 33 | 0 | 24 | 87 | 8 | 71 | 3.33e-11 | 63.5 |
| Msa1115750 | AT1G21080.1 | 44.615 | 65 | 36 | 0 | 23 | 87 | 7 | 71 | 3.54e-11 | 63.5 |
| Msa1115750 | AT1G21080.3 | 44.615 | 65 | 36 | 0 | 23 | 87 | 7 | 71 | 3.68e-11 | 63.5 |
| Msa1115750 | AT1G80030.2 | 42.222 | 90 | 45 | 3 | 24 | 109 | 77 | 163 | 8.47e-11 | 62.8 |
| Msa1115750 | AT1G80030.3 | 42.222 | 90 | 45 | 3 | 24 | 109 | 77 | 163 | 8.47e-11 | 62.8 |
| Msa1115750 | AT1G80030.1 | 42.222 | 90 | 45 | 3 | 24 | 109 | 77 | 163 | 8.47e-11 | 62.8 |
| Msa1115750 | AT1G80030.4 | 42.222 | 90 | 45 | 3 | 24 | 109 | 77 | 163 | 8.64e-11 | 62.8 |
| Msa1115750 | AT1G76700.1 | 45.312 | 64 | 35 | 0 | 24 | 87 | 8 | 71 | 9.72e-11 | 62.4 |
Find 72 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTTGCCTTCCTCTTTAA+AGG | 0.151143 | 7_3:+63275560 | None:intergenic |
| CCCGCTATAATTTACGATTC+AGG | 0.236137 | 7_3:+63278573 | None:intergenic |
| ACACAGAGAGATTTGTTTGA+TGG | 0.322319 | 7_3:+63278452 | None:intergenic |
| GTCACTGCTCGGAAGTAAAA+TGG | 0.322812 | 7_3:+63275064 | None:intergenic |
| AATTCCTCTTCAGAGGGTTC+TGG | 0.332420 | 7_3:+63275339 | None:intergenic |
| CAACAAAAGCCTATCAGAAA+TGG | 0.338120 | 7_3:-63275619 | Msa1115750:CDS |
| CCGCAATGCCAATTTGTAAT+AGG | 0.349899 | 7_3:+63277440 | None:intergenic |
| AAAGAAGGCCTATTACAAAT+TGG | 0.353677 | 7_3:-63277448 | Msa1115750:CDS |
| TTGATTGTAGATTCTTTGTT+TGG | 0.356730 | 7_3:-63277496 | Msa1115750:intron |
| TATGTGCAATGTAGTGTAAC+TGG | 0.358290 | 7_3:-63275104 | Msa1115750:three_prime_UTR |
| TAAAGGACTTGTGGGTGGTT+TGG | 0.373974 | 7_3:+63275577 | None:intergenic |
| TTCCTCTTTAAAGGACTTGT+GGG | 0.398805 | 7_3:+63275569 | None:intergenic |
| TTTCTCTTCGTCTCCAAGAA+TGG | 0.400542 | 7_3:+63277242 | None:intergenic |
| GGAGAAAACGGCCTCTCAAC+AGG | 0.402476 | 7_3:-63277475 | Msa1115750:CDS |
| TTCCTTAGCCCATTTCTGAT+AGG | 0.413370 | 7_3:+63275610 | None:intergenic |
| ACTTGACTCACACCGATTCA+AGG | 0.428801 | 7_3:-63276199 | Msa1115750:CDS |
| TAACGGCGGGAAAAGAATAA+AGG | 0.432023 | 7_3:-63278602 | None:intergenic |
| CTTCCTCTTTAAAGGACTTG+TGG | 0.442578 | 7_3:+63275568 | None:intergenic |
| ATCTTCAATTTCTTCATCAT+CGG | 0.442588 | 7_3:+63278396 | None:intergenic |
| GATTCTTTGTTTGGAGAAAA+CGG | 0.443264 | 7_3:-63277487 | Msa1115750:CDS |
| TTCTTGGAGACGAAGAGAAA+CGG | 0.455460 | 7_3:-63277239 | Msa1115750:CDS |
| TCTTGGAGACGAAGAGAAAC+GGG | 0.461614 | 7_3:-63277238 | Msa1115750:CDS |
| CAGTGACAGTAAGTATTTGA+TGG | 0.465225 | 7_3:-63275048 | Msa1115750:three_prime_UTR |
| GATGATGTGAGTGGTGTTGT+TGG | 0.474079 | 7_3:-63277186 | Msa1115750:CDS |
| TGGCGCCTAGGAAGAAAACT+AGG | 0.476592 | 7_3:-63278423 | Msa1115750:CDS |
| CATATCACTTCCACCATACC+TGG | 0.477202 | 7_3:+63275362 | None:intergenic |
| ATTGGCATTGCGGCTCCATC+CGG | 0.480375 | 7_3:-63277430 | Msa1115750:CDS |
| AACAAAAGCCTATCAGAAAT+GGG | 0.492566 | 7_3:-63275618 | Msa1115750:CDS |
| CAATTCTGCAGGAGAACTAA+AGG | 0.494458 | 7_3:-63275642 | Msa1115750:intron |
| CTTGACGAGGCTACAGCTGC+TGG | 0.494490 | 7_3:-63276171 | Msa1115750:intron |
| CTCCATCCGGATAAGAATCC+TGG | 0.497248 | 7_3:-63277417 | Msa1115750:CDS |
| TTTCAAAACAATGTACAAGA+AGG | 0.504724 | 7_3:-63276559 | Msa1115750:intron |
| CGTCAAGAATGTCCTTGAAT+CGG | 0.509676 | 7_3:+63276187 | None:intergenic |
| TCATCACCAGGATTCTTATC+CGG | 0.517060 | 7_3:+63277411 | None:intergenic |
| CTCTTTAAAGGACTTGTGGG+TGG | 0.519289 | 7_3:+63275572 | None:intergenic |
| AGTACAAGGGGAATATGAAA+AGG | 0.520113 | 7_3:-63276367 | Msa1115750:intron |
| CTTCTTTATTTCCTGTTGAG+AGG | 0.522934 | 7_3:+63277464 | None:intergenic |
| CACCCACAAGTCCTTTAAAG+AGG | 0.526019 | 7_3:-63275571 | Msa1115750:CDS |
| AGCTTCAAATTCCTCTTCAG+AGG | 0.534350 | 7_3:+63275332 | None:intergenic |
| GCGTCTCTAGTGTCCAGGTA+TGG | 0.540780 | 7_3:-63275375 | Msa1115750:CDS |
| GGAGTTTGAAGCAAACTACC+GGG | 0.541480 | 7_3:-63276432 | Msa1115750:CDS |
| CTCTCAACAGGAAATAAAGA+AGG | 0.543058 | 7_3:-63277463 | Msa1115750:CDS |
| CCTGAATCGTAAATTATAGC+GGG | 0.543962 | 7_3:-63278573 | Msa1115750:five_prime_UTR |
| CACAAGTCCTTTAAAGAGGA+AGG | 0.544290 | 7_3:-63275567 | Msa1115750:CDS |
| GCTTCAAATTCCTCTTCAGA+GGG | 0.547917 | 7_3:+63275333 | None:intergenic |
| GTAATCGTTGTTCGTTTCTG+TGG | 0.549992 | 7_3:-63275148 | Msa1115750:three_prime_UTR |
| AGGAGTTTGAAGCAAACTAC+CGG | 0.550523 | 7_3:-63276433 | Msa1115750:CDS |
| AAATTTGATTACTACATGAA+AGG | 0.551755 | 7_3:+63275175 | None:intergenic |
| CAACGCCGAAATGAGAGAAA+AGG | 0.552364 | 7_3:-63275417 | Msa1115750:CDS |
| AGCCTATCAGAAATGGGCTA+AGG | 0.554604 | 7_3:-63275612 | Msa1115750:CDS |
| CACCAGGATTCTTATCCGGA+TGG | 0.564510 | 7_3:+63277415 | None:intergenic |
| TCTGTTAATCAGGATCTGGC+AGG | 0.566964 | 7_3:-63276606 | Msa1115750:intron |
| TCGTTTCTGTGGATTTACTT+TGG | 0.572285 | 7_3:-63275137 | Msa1115750:three_prime_UTR |
| TAAAGAATCACCTCATCACC+AGG | 0.585098 | 7_3:+63277399 | None:intergenic |
| GGTCACTGAAGCTGATATTG+AGG | 0.586002 | 7_3:-63276453 | Msa1115750:CDS |
| TCTCTAGTGTCCAGGTATGG+TGG | 0.587064 | 7_3:-63275372 | Msa1115750:CDS |
| CGGGCTCTCTATGATCAGAC+TGG | 0.592329 | 7_3:-63277219 | Msa1115750:CDS |
| TACTATATTTGTGTGAAGTG+TGG | 0.603157 | 7_3:-63275214 | Msa1115750:three_prime_UTR |
| TGAGCTGTACAAGAAGTACA+AGG | 0.603637 | 7_3:-63276381 | Msa1115750:CDS |
| ACTATATTTGTGTGAAGTGT+GGG | 0.604948 | 7_3:-63275213 | Msa1115750:three_prime_UTR |
| ACCTGAATCGTAAATTATAG+CGG | 0.612965 | 7_3:-63278574 | Msa1115750:five_prime_UTR |
| TTGTGTGAAGTGTGGGAACA+TGG | 0.614012 | 7_3:-63275206 | Msa1115750:three_prime_UTR |
| CCTATTACAAATTGGCATTG+CGG | 0.615148 | 7_3:-63277440 | Msa1115750:CDS |
| TATGCCAGAACCCTCTGAAG+AGG | 0.616007 | 7_3:-63275343 | Msa1115750:CDS |
| AGCTGTACAAGAAGTACAAG+GGG | 0.628903 | 7_3:-63276379 | Msa1115750:CDS |
| AAATACTTACTGTCACTGCT+CGG | 0.630011 | 7_3:+63275053 | None:intergenic |
| GGCGCCTAGGAAGAAAACTA+GGG | 0.652410 | 7_3:-63278422 | Msa1115750:CDS |
| GAGCTGTACAAGAAGTACAA+GGG | 0.653305 | 7_3:-63276380 | Msa1115750:CDS |
| GGATAAGAATCCTGGTGATG+AGG | 0.653734 | 7_3:-63277409 | Msa1115750:intron |
| TGCATTGATGATGATGTGAG+TGG | 0.663032 | 7_3:-63277195 | Msa1115750:CDS |
| ATTCAAGGACATTCTTGACG+AGG | 0.685776 | 7_3:-63276184 | Msa1115750:CDS |
| GAGTTTGAAGCAAACTACCG+GGG | 0.707683 | 7_3:-63276431 | Msa1115750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATTATTTGTTTGT+TGG | - | chr7_3:63276259-63276278 | Msa1115750:intron | 10.0% |
| !!! | TATTGTTGTTTTTTATTTAT+TGG | - | chr7_3:63276451-63276470 | Msa1115750:CDS | 10.0% |
| !!! | ATTTTTAAACAAAAAGTTTG+TGG | + | chr7_3:63275063-63275082 | None:intergenic | 15.0% |
| !! | ATACATGATACATATATAAT+TGG | + | chr7_3:63276719-63276738 | None:intergenic | 15.0% |
| !!! | AATAAAGCATTATTAATTTG+TGG | - | chr7_3:63277262-63277281 | Msa1115750:CDS | 15.0% |
| !! | CATAGAAAAGTAATTTATAA+TGG | + | chr7_3:63277901-63277920 | None:intergenic | 15.0% |
| !!! | CATTATAAATTACTTTTCTA+TGG | - | chr7_3:63277899-63277918 | Msa1115750:intron | 15.0% |
| !! | AATACAAACTTTGTTCAAAA+TGG | + | chr7_3:63275409-63275428 | None:intergenic | 20.0% |
| !! | TAAATTCAAACTCAATCTAA+AGG | + | chr7_3:63275495-63275514 | None:intergenic | 20.0% |
| !! | TTAAAGAACTTTACTATGAT+TGG | + | chr7_3:63275705-63275724 | None:intergenic | 20.0% |
| !!! | AAAGTTCTTTAATGTTGATT+CGG | - | chr7_3:63275713-63275732 | Msa1115750:intron | 20.0% |
| !! | TAATAATTCAACAAGAAAAG+TGG | + | chr7_3:63276027-63276046 | None:intergenic | 20.0% |
| !! | ATGATACATATATAATTGGA+AGG | + | chr7_3:63276715-63276734 | None:intergenic | 20.0% |
| !!! | AAGTATTTTGAGTATTTTTG+GGG | + | chr7_3:63277718-63277737 | None:intergenic | 20.0% |
| !!! | CAAGTATTTTGAGTATTTTT+GGG | + | chr7_3:63277719-63277738 | None:intergenic | 20.0% |
| !!! | ACAAGTATTTTGAGTATTTT+TGG | + | chr7_3:63277720-63277739 | None:intergenic | 20.0% |
| !!! | TGCTTTTTAATAACAAATAC+TGG | - | chr7_3:63277849-63277868 | Msa1115750:intron | 20.0% |
| !!! | GCTTTTTAATAACAAATACT+GGG | - | chr7_3:63277850-63277869 | Msa1115750:intron | 20.0% |
| !!! | CTTTTTAATAACAAATACTG+GGG | - | chr7_3:63277851-63277870 | Msa1115750:intron | 20.0% |
| !! | AAATTTGATTACTACATGAA+AGG | + | chr7_3:63278433-63278452 | None:intergenic | 20.0% |
| ! | ATCTTCAATTTCTTCATCAT+CGG | + | chr7_3:63275212-63275231 | None:intergenic | 25.0% |
| !! | GCTTAAAAACAGGATTTTTA+TGG | - | chr7_3:63275610-63275629 | Msa1115750:CDS | 25.0% |
| ! | TTGATTGTAGATTCTTTGTT+TGG | - | chr7_3:63276109-63276128 | Msa1115750:intron | 25.0% |
| ! | TAAAATATAAACGCAATCCA+CGG | + | chr7_3:63276247-63276266 | None:intergenic | 25.0% |
| !!! | TATTTGTTTGTTGGCTTTTT+TGG | - | chr7_3:63276268-63276287 | Msa1115750:intron | 25.0% |
| !!! | ATTTGTTTGTTGGCTTTTTT+GGG | - | chr7_3:63276269-63276288 | Msa1115750:intron | 25.0% |
| ! | ATAATTACTTGTGTTCATAC+AGG | - | chr7_3:63276301-63276320 | Msa1115750:intron | 25.0% |
| !! | AAATAACTTTTTGCAATTGC+TGG | + | chr7_3:63276343-63276362 | None:intergenic | 25.0% |
| !! | CAAAAAGTTATTTCCATTCT+TGG | - | chr7_3:63276350-63276369 | Msa1115750:intron | 25.0% |
| ! | AATAAATTTAACAGACCACA+AGG | + | chr7_3:63276552-63276571 | None:intergenic | 25.0% |
| ! | TGGTCTGTTAAATTTATTTG+AGG | - | chr7_3:63276554-63276573 | Msa1115750:intron | 25.0% |
| ! | GGTCTGTTAAATTTATTTGA+GGG | - | chr7_3:63276555-63276574 | Msa1115750:intron | 25.0% |
| ! | ATCCGAATATAGGAATAAAA+TGG | - | chr7_3:63276597-63276616 | Msa1115750:CDS | 25.0% |
| !! | CACCATTTTATTCCTATATT+CGG | + | chr7_3:63276602-63276621 | None:intergenic | 25.0% |
| !! | TAGGAATAAAATGGTGTTAA+CGG | - | chr7_3:63276606-63276625 | Msa1115750:intron | 25.0% |
| ! | TCTTAAAGAACTCATTAACA+AGG | + | chr7_3:63276811-63276830 | None:intergenic | 25.0% |
| ! | TTTCAAAACAATGTACAAGA+AGG | - | chr7_3:63277046-63277065 | Msa1115750:intron | 25.0% |
| !! | TTGAATGTGTTATTGTAAAG+AGG | - | chr7_3:63277313-63277332 | Msa1115750:intron | 25.0% |
| !! | ACTTCTTCAAATGTTTTACT+TGG | + | chr7_3:63277679-63277698 | None:intergenic | 25.0% |
| ! | ATATCGTTATCTATGTTAAC+TGG | + | chr7_3:63277761-63277780 | None:intergenic | 25.0% |
| ! | AACAGTTAATACTCTCATAT+CGG | - | chr7_3:63277792-63277811 | Msa1115750:intron | 25.0% |
| ! | TTAATAGAACAAGTAAAACC+CGG | + | chr7_3:63278081-63278100 | None:intergenic | 25.0% |
| !! | ATTGATTTACTCTGTAATAG+AGG | - | chr7_3:63278100-63278119 | Msa1115750:intron | 25.0% |
| !!! | ATTGATCCATTGCTTTTTAT+AGG | - | chr7_3:63278123-63278142 | Msa1115750:intron | 25.0% |
| ! | ATTTGACCTATAAAAAGCAA+TGG | + | chr7_3:63278132-63278151 | None:intergenic | 25.0% |
| !!! | TGATTGCTTTGATTTTTTTG+AGG | + | chr7_3:63278327-63278346 | None:intergenic | 25.0% |
| ACCTGAATCGTAAATTATAG+CGG | - | chr7_3:63275031-63275050 | Msa1115750:three_prime_UTR | 30.0% | |
| AAATCTCTCTGTGTGAAAAA+TGG | - | chr7_3:63275162-63275181 | Msa1115750:three_prime_UTR | 30.0% | |
| ! | TAAATTGAGCTTTGACATTG+AGG | - | chr7_3:63275569-63275588 | Msa1115750:CDS | 30.0% |
| TGGTGAATATGCTTAAAAAC+AGG | - | chr7_3:63275600-63275619 | Msa1115750:CDS | 30.0% | |
| ! | AACAGGATTTTTATGGTTTC+TGG | - | chr7_3:63275617-63275636 | Msa1115750:CDS | 30.0% |
| ! | ACAAAAAACAGAAGCATGAT+TGG | + | chr7_3:63275654-63275673 | None:intergenic | 30.0% |
| CAACTTCAGCTTATATAACA+AGG | + | chr7_3:63275757-63275776 | None:intergenic | 30.0% | |
| ! | AATGTGAAAGTGCAAAAAAG+AGG | - | chr7_3:63275793-63275812 | Msa1115750:intron | 30.0% |
| !! | GTGCAAAAAAGAGGTTTTAT+CGG | - | chr7_3:63275802-63275821 | Msa1115750:intron | 30.0% |
| AAACACATTGTAAACACCTT+GGG | - | chr7_3:63275846-63275865 | Msa1115750:intron | 30.0% | |
| AAATGATTCGTAATTACCCA+AGG | + | chr7_3:63275865-63275884 | None:intergenic | 30.0% | |
| AATTACGAATCATTTGAGGA+AGG | - | chr7_3:63275870-63275889 | Msa1115750:intron | 30.0% | |
| AATCCTAGAGTTGTAATGTT+TGG | - | chr7_3:63275912-63275931 | Msa1115750:intron | 30.0% | |
| ATTCCAAACATTACAACTCT+AGG | + | chr7_3:63275918-63275937 | None:intergenic | 30.0% | |
| !! | TTTGCTAGATCAGTTAGTTT+TGG | - | chr7_3:63275983-63276002 | Msa1115750:intron | 30.0% |
| ! | GATTCTTTGTTTGGAGAAAA+CGG | - | chr7_3:63276118-63276137 | Msa1115750:intron | 30.0% |
| AAAGAAGGCCTATTACAAAT+TGG | - | chr7_3:63276157-63276176 | Msa1115750:intron | 30.0% | |
| ATTAATCCGGCATAATATGT+TGG | - | chr7_3:63276492-63276511 | Msa1115750:intron | 30.0% | |
| GTAAATCCAACATATTATGC+CGG | + | chr7_3:63276501-63276520 | None:intergenic | 30.0% | |
| ATACTACTGAATCCGAATAT+AGG | - | chr7_3:63276587-63276606 | Msa1115750:CDS | 30.0% | |
| ATTACAAAGTGGAAATTGAG+AGG | + | chr7_3:63276671-63276690 | None:intergenic | 30.0% | |
| TGTCCAAAATGCTAATTGTT+GGG | + | chr7_3:63276931-63276950 | None:intergenic | 30.0% | |
| CATTATCTCTTCTGTTAATC+AGG | - | chr7_3:63276989-63277008 | Msa1115750:intron | 30.0% | |
| !!! | GTTTTTTTGTAATGAACCAC+AGG | - | chr7_3:63277131-63277150 | Msa1115750:intron | 30.0% |
| !!! | GCATTAGTCATTTTTGTAAG+AGG | - | chr7_3:63277288-63277307 | Msa1115750:intron | 30.0% |
| TTTAGTCAGATATTTGGTCT+GGG | - | chr7_3:63277490-63277509 | Msa1115750:intron | 30.0% | |
| CTAAAAGCAAAATAACTGCT+AGG | + | chr7_3:63277586-63277605 | None:intergenic | 30.0% | |
| !! | CTAGCAGTTATTTTGCTTTT+AGG | - | chr7_3:63277584-63277603 | Msa1115750:intron | 30.0% |
| AATCAGCGTATTAATTCCTT+TGG | - | chr7_3:63277618-63277637 | Msa1115750:intron | 30.0% | |
| CTTTCTTAGAAAAAGACCAA+AGG | + | chr7_3:63277637-63277656 | None:intergenic | 30.0% | |
| !! | GATATGAGAGTATTAACTGT+TGG | + | chr7_3:63277793-63277812 | None:intergenic | 30.0% |
| !!! | ATAATGGACTCTAGAGATTT+TGG | + | chr7_3:63277885-63277904 | None:intergenic | 30.0% |
| TTTAATGTTCTCAATTCTGC+AGG | - | chr7_3:63277952-63277971 | Msa1115750:intron | 30.0% | |
| AACAAAAGCCTATCAGAAAT+GGG | - | chr7_3:63277987-63278006 | Msa1115750:intron | 30.0% | |
| TACTATATTTGTGTGAAGTG+TGG | - | chr7_3:63278391-63278410 | Msa1115750:CDS | 30.0% | |
| ACTATATTTGTGTGAAGTGT+GGG | - | chr7_3:63278392-63278411 | Msa1115750:CDS | 30.0% | |
| CCTGAATCGTAAATTATAGC+GGG | - | chr7_3:63275032-63275051 | Msa1115750:three_prime_UTR | 35.0% | |
| ! | ACACAGAGAGATTTGTTTGA+TGG | + | chr7_3:63275156-63275175 | None:intergenic | 35.0% |
| AGCGAAATGAAAATTTGCAG+AGG | + | chr7_3:63275288-63275307 | None:intergenic | 35.0% | |
| TTTGTATTTGTGCGTGTGTT+AGG | - | chr7_3:63275421-63275440 | Msa1115750:CDS | 35.0% | |
| TTGTATTTGTGCGTGTGTTA+GGG | - | chr7_3:63275422-63275441 | Msa1115750:CDS | 35.0% | |
| ! | TTGATGTGTGAAGTTTTCAG+TGG | - | chr7_3:63275528-63275547 | Msa1115750:intron | 35.0% |
| TTGACATTGAGGCAAAATTG+TGG | - | chr7_3:63275580-63275599 | Msa1115750:CDS | 35.0% | |
| !!! | GATTTTTATGGTTTCTGGCA+TGG | - | chr7_3:63275622-63275641 | Msa1115750:CDS | 35.0% |
| !!! | TTCTGTTTTTTGTCTCGTGA+TGG | - | chr7_3:63275661-63275680 | Msa1115750:intron | 35.0% |
| AACAAGGCAAAAAACCAGTT+GGG | + | chr7_3:63275741-63275760 | None:intergenic | 35.0% | |
| TAACAAGGCAAAAAACCAGT+TGG | + | chr7_3:63275742-63275761 | None:intergenic | 35.0% | |
| GTTATATAAGCTGAAGTTGC+AGG | - | chr7_3:63275758-63275777 | Msa1115750:intron | 35.0% | |
| ! | TTTATCGGTTGAGAGTGATT+TGG | - | chr7_3:63275817-63275836 | Msa1115750:intron | 35.0% |
| ! | TTATCGGTTGAGAGTGATTT+GGG | - | chr7_3:63275818-63275837 | Msa1115750:intron | 35.0% |
| GAAACACATTGTAAACACCT+TGG | - | chr7_3:63275845-63275864 | Msa1115750:intron | 35.0% | |
| GGGTAATTACGAATCATTTG+AGG | - | chr7_3:63275866-63275885 | Msa1115750:intron | 35.0% | |
| !! | ACTGGTTCTAGATTTCTTCT+TGG | - | chr7_3:63275949-63275968 | Msa1115750:intron | 35.0% |
| ! | CAACTGATTTAGCATGTGTT+TGG | + | chr7_3:63276084-63276103 | None:intergenic | 35.0% |
| ! | CTTCTTTATTTCCTGTTGAG+AGG | + | chr7_3:63276144-63276163 | None:intergenic | 35.0% |
| CTCTCAACAGGAAATAAAGA+AGG | - | chr7_3:63276142-63276161 | Msa1115750:intron | 35.0% | |
| CCTATTACAAATTGGCATTG+CGG | - | chr7_3:63276165-63276184 | Msa1115750:intron | 35.0% | |
| ATTACTTGTGTTCATACAGG+AGG | - | chr7_3:63276304-63276323 | Msa1115750:intron | 35.0% | |
| CTGTCCAAGATGAATTAATC+CGG | - | chr7_3:63276479-63276498 | Msa1115750:intron | 35.0% | |
| TATGCCGGATTAATTCATCT+TGG | + | chr7_3:63276486-63276505 | None:intergenic | 35.0% | |
| !! | CAAGGACTTGCTAAAAACTT+AGG | + | chr7_3:63276534-63276553 | None:intergenic | 35.0% |
| !!! | AAGTTTTTAGCAAGTCCTTG+TGG | - | chr7_3:63276534-63276553 | Msa1115750:intron | 35.0% |
| AAATTGAGAGGAAAAGCCTT+TGG | + | chr7_3:63276659-63276678 | None:intergenic | 35.0% | |
| CAGAATCTCAGATTACAAAG+TGG | + | chr7_3:63276682-63276701 | None:intergenic | 35.0% | |
| TGTTAAGCGAGACAGAATAT+GGG | + | chr7_3:63276743-63276762 | None:intergenic | 35.0% | |
| ATGTTAAGCGAGACAGAATA+TGG | + | chr7_3:63276744-63276763 | None:intergenic | 35.0% | |
| ! | ATGCCCAACAATTAGCATTT+TGG | - | chr7_3:63276925-63276944 | Msa1115750:intron | 35.0% |
| GTGTCCAAAATGCTAATTGT+TGG | + | chr7_3:63276932-63276951 | None:intergenic | 35.0% | |
| AGTACAAGGGGAATATGAAA+AGG | - | chr7_3:63277238-63277257 | Msa1115750:CDS | 35.0% | |
| ! | TAACTAGATTTTGCTGAGCA+TGG | - | chr7_3:63277467-63277486 | Msa1115750:CDS | 35.0% |
| GCATGGTTTAGTCAGATATT+TGG | - | chr7_3:63277484-63277503 | Msa1115750:CDS | 35.0% | |
| GTTTAGTCAGATATTTGGTC+TGG | - | chr7_3:63277489-63277508 | Msa1115750:CDS | 35.0% | |
| GAAAGAAAGACCTAATCATC+AGG | - | chr7_3:63277652-63277671 | Msa1115750:intron | 35.0% | |
| TTTACTTGGTCCTGATGATT+AGG | + | chr7_3:63277665-63277684 | None:intergenic | 35.0% | |
| ! | GGTCTCTGTTTCTTATAACT+AGG | - | chr7_3:63277813-63277832 | Msa1115750:intron | 35.0% |
| CAACAAAAGCCTATCAGAAA+TGG | - | chr7_3:63277986-63278005 | Msa1115750:intron | 35.0% | |
| ! | TTCCTCTTTAAAGGACTTGT+GGG | + | chr7_3:63278039-63278058 | None:intergenic | 35.0% |
| TACTTTGCCTTCCTCTTTAA+AGG | + | chr7_3:63278048-63278067 | None:intergenic | 35.0% | |
| ! | ACTGACCTTTTCTCTCATTT+CGG | + | chr7_3:63278196-63278215 | None:intergenic | 35.0% |
| TCGTTTCTGTGGATTTACTT+TGG | - | chr7_3:63278468-63278487 | Msa1115750:five_prime_UTR | 35.0% | |
| TATGTGCAATGTAGTGTAAC+TGG | - | chr7_3:63278501-63278520 | Msa1115750:five_prime_UTR | 35.0% | |
| AAATACTTACTGTCACTGCT+CGG | + | chr7_3:63278555-63278574 | None:intergenic | 35.0% | |
| CAGTGACAGTAAGTATTTGA+TGG | - | chr7_3:63278557-63278576 | Msa1115750:five_prime_UTR | 35.0% | |
| CCCGCTATAATTTACGATTC+AGG | + | chr7_3:63275035-63275054 | None:intergenic | 40.0% | |
| !! | GAAACCCTAGTTTTCTTCCT+AGG | + | chr7_3:63275190-63275209 | None:intergenic | 40.0% |
| ACCTCAAAAAAGTCTCTACC+AGG | - | chr7_3:63275234-63275253 | Msa1115750:three_prime_UTR | 40.0% | |
| !!! | ACCTGGTAGAGACTTTTTTG+AGG | + | chr7_3:63275238-63275257 | None:intergenic | 40.0% |
| TCGTGATGGTTCTTGCATAA+GGG | - | chr7_3:63275675-63275694 | Msa1115750:intron | 40.0% | |
| TATAAGCTGAAGTTGCAGGA+TGG | - | chr7_3:63275762-63275781 | Msa1115750:intron | 40.0% | |
| TTAGCATGTGTTTGGATGCA+TGG | + | chr7_3:63276076-63276095 | None:intergenic | 40.0% | |
| CCGCAATGCCAATTTGTAAT+AGG | + | chr7_3:63276168-63276187 | None:intergenic | 40.0% | |
| TCATCACCAGGATTCTTATC+CGG | + | chr7_3:63276197-63276216 | None:intergenic | 40.0% | |
| TAAAGAATCACCTCATCACC+AGG | + | chr7_3:63276209-63276228 | None:intergenic | 40.0% | |
| GGTGATGAGGTGATTCTTTA+AGG | - | chr7_3:63276209-63276228 | Msa1115750:CDS | 40.0% | |
| !!! | GTTTGTTGGCTTTTTTGGGT+TGG | - | chr7_3:63276273-63276292 | Msa1115750:intron | 40.0% |
| TTTCTCTTCGTCTCCAAGAA+TGG | + | chr7_3:63276366-63276385 | None:intergenic | 40.0% | |
| TTCTTGGAGACGAAGAGAAA+CGG | - | chr7_3:63276366-63276385 | Msa1115750:intron | 40.0% | |
| !! | TGCATTGATGATGATGTGAG+TGG | - | chr7_3:63276410-63276429 | Msa1115750:CDS | 40.0% |
| TCTCGCTTAACATGTTCAGT+CGG | - | chr7_3:63276751-63276770 | Msa1115750:intron | 40.0% | |
| CTCTTCTGTTAATCAGGATC+TGG | - | chr7_3:63276995-63277014 | Msa1115750:intron | 40.0% | |
| ATACCACAATGCATCAGGAA+AGG | + | chr7_3:63277095-63277114 | None:intergenic | 40.0% | |
| CATGTATACCACAATGCATC+AGG | + | chr7_3:63277100-63277119 | None:intergenic | 40.0% | |
| ! | AGGAGTTTGAAGCAAACTAC+CGG | - | chr7_3:63277172-63277191 | Msa1115750:CDS | 40.0% |
| ! | TGAGCTGTACAAGAAGTACA+AGG | - | chr7_3:63277224-63277243 | Msa1115750:CDS | 40.0% |
| ! | GAGCTGTACAAGAAGTACAA+GGG | - | chr7_3:63277225-63277244 | Msa1115750:CDS | 40.0% |
| ! | AGCTGTACAAGAAGTACAAG+GGG | - | chr7_3:63277226-63277245 | Msa1115750:CDS | 40.0% |
| CGTCAAGAATGTCCTTGAAT+CGG | + | chr7_3:63277421-63277440 | None:intergenic | 40.0% | |
| ATTCAAGGACATTCTTGACG+AGG | - | chr7_3:63277421-63277440 | Msa1115750:CDS | 40.0% | |
| ! | TTAGACTAGAAGAGCACAGT+GGG | - | chr7_3:63277557-63277576 | Msa1115750:intron | 40.0% |
| CAATTCTGCAGGAGAACTAA+AGG | - | chr7_3:63277963-63277982 | Msa1115750:intron | 40.0% | |
| TTCCTTAGCCCATTTCTGAT+AGG | + | chr7_3:63277998-63278017 | None:intergenic | 40.0% | |
| ! | CTTCCTCTTTAAAGGACTTG+TGG | + | chr7_3:63278040-63278059 | None:intergenic | 40.0% |
| ! | CACAAGTCCTTTAAAGAGGA+AGG | - | chr7_3:63278038-63278057 | Msa1115750:intron | 40.0% |
| GCTTCAAATTCCTCTTCAGA+GGG | + | chr7_3:63278275-63278294 | None:intergenic | 40.0% | |
| AGCTTCAAATTCCTCTTCAG+AGG | + | chr7_3:63278276-63278295 | None:intergenic | 40.0% | |
| TGCACAGAAAAAGCTGGAAA+AGG | - | chr7_3:63278295-63278314 | Msa1115750:intron | 40.0% | |
| GCACAGAAAAAGCTGGAAAA+GGG | - | chr7_3:63278296-63278315 | Msa1115750:intron | 40.0% | |
| GTAATCGTTGTTCGTTTCTG+TGG | - | chr7_3:63278457-63278476 | Msa1115750:five_prime_UTR | 40.0% | |
| AAGCGTGAATTTGCGATACC+TGG | + | chr7_3:63275255-63275274 | None:intergenic | 45.0% | |
| CTCGTGATGGTTCTTGCATA+AGG | - | chr7_3:63275674-63275693 | Msa1115750:intron | 45.0% | |
| !! | ATGTTGATTCGGATCCCAAC+TGG | - | chr7_3:63275724-63275743 | Msa1115750:intron | 45.0% |
| ! | GGTTGAGAGTGATTTGGGTT+GGG | - | chr7_3:63275823-63275842 | Msa1115750:intron | 45.0% |
| TTGGAATTGCACTTGCACAC+TGG | - | chr7_3:63275931-63275950 | Msa1115750:intron | 45.0% | |
| ! | GGATAAGAATCCTGGTGATG+AGG | - | chr7_3:63276196-63276215 | Msa1115750:CDS | 45.0% |
| TCTTGGAGACGAAGAGAAAC+GGG | - | chr7_3:63276367-63276386 | Msa1115750:intron | 45.0% | |
| !! | GATGATGTGAGTGGTGTTGT+TGG | - | chr7_3:63276419-63276438 | Msa1115750:CDS | 45.0% |
| CCTTTGGTCTCTCAATCTAG+GGG | + | chr7_3:63276643-63276662 | None:intergenic | 45.0% | |
| GCCTTTGGTCTCTCAATCTA+GGG | + | chr7_3:63276644-63276663 | None:intergenic | 45.0% | |
| AGCCTTTGGTCTCTCAATCT+AGG | + | chr7_3:63276645-63276664 | None:intergenic | 45.0% | |
| CTCGCTTAACATGTTCAGTC+GGG | - | chr7_3:63276752-63276771 | Msa1115750:intron | 45.0% | |
| TCTGTTAATCAGGATCTGGC+AGG | - | chr7_3:63276999-63277018 | Msa1115750:intron | 45.0% | |
| TCTCCTTTCCTGATGCATTG+TGG | - | chr7_3:63277089-63277108 | Msa1115750:intron | 45.0% | |
| ATATCAGCTTCAGTGACCTG+TGG | + | chr7_3:63277150-63277169 | None:intergenic | 45.0% | |
| GGTCACTGAAGCTGATATTG+AGG | - | chr7_3:63277152-63277171 | Msa1115750:intron | 45.0% | |
| ! | GGAGTTTGAAGCAAACTACC+GGG | - | chr7_3:63277173-63277192 | Msa1115750:CDS | 45.0% |
| ! | GAGTTTGAAGCAAACTACCG+GGG | - | chr7_3:63277174-63277193 | Msa1115750:CDS | 45.0% |
| ! | TTTTCTCTGAGTCAGAACCC+CGG | + | chr7_3:63277194-63277213 | None:intergenic | 45.0% |
| !! | ACTTGACTCACACCGATTCA+AGG | - | chr7_3:63277406-63277425 | Msa1115750:intron | 45.0% |
| ! | GTTAGACTAGAAGAGCACAG+TGG | - | chr7_3:63277556-63277575 | Msa1115750:intron | 45.0% |
| !! | AGCCTATCAGAAATGGGCTA+AGG | - | chr7_3:63277993-63278012 | Msa1115750:intron | 45.0% |
| TAAAGGACTTGTGGGTGGTT+TGG | + | chr7_3:63278031-63278050 | None:intergenic | 45.0% | |
| ! | CTCTTTAAAGGACTTGTGGG+TGG | + | chr7_3:63278036-63278055 | None:intergenic | 45.0% |
| ! | CACCCACAAGTCCTTTAAAG+AGG | - | chr7_3:63278034-63278053 | Msa1115750:intron | 45.0% |
| GGCAAAGTAAGCTGATCAAC+CGG | - | chr7_3:63278059-63278078 | Msa1115750:intron | 45.0% | |
| GCAAAGTAAGCTGATCAACC+GGG | - | chr7_3:63278060-63278079 | Msa1115750:intron | 45.0% | |
| CAACGCCGAAATGAGAGAAA+AGG | - | chr7_3:63278188-63278207 | Msa1115750:intron | 45.0% | |
| CATATCACTTCCACCATACC+TGG | + | chr7_3:63278246-63278265 | None:intergenic | 45.0% | |
| AATTCCTCTTCAGAGGGTTC+TGG | + | chr7_3:63278269-63278288 | None:intergenic | 45.0% | |
| TGAAGCTGCACAGAAAAAGC+TGG | - | chr7_3:63278289-63278308 | Msa1115750:intron | 45.0% | |
| TTGTGTGAAGTGTGGGAACA+TGG | - | chr7_3:63278399-63278418 | Msa1115750:CDS | 45.0% | |
| GTCACTGCTCGGAAGTAAAA+TGG | + | chr7_3:63278544-63278563 | None:intergenic | 45.0% | |
| CTGTGTGAAAAATGGCGCCT+AGG | - | chr7_3:63275170-63275189 | Msa1115750:three_prime_UTR | 50.0% | |
| TGGCGCCTAGGAAGAAAACT+AGG | - | chr7_3:63275182-63275201 | Msa1115750:three_prime_UTR | 50.0% | |
| GGCGCCTAGGAAGAAAACTA+GGG | - | chr7_3:63275183-63275202 | Msa1115750:three_prime_UTR | 50.0% | |
| ! | CGGTTGAGAGTGATTTGGGT+TGG | - | chr7_3:63275822-63275841 | Msa1115750:intron | 50.0% |
| CTCCATCCGGATAAGAATCC+TGG | - | chr7_3:63276188-63276207 | Msa1115750:CDS | 50.0% | |
| CACCAGGATTCTTATCCGGA+TGG | + | chr7_3:63276193-63276212 | None:intergenic | 50.0% | |
| !! | TAAGGCTGCTTGTTATGCCG+TGG | - | chr7_3:63276227-63276246 | Msa1115750:CDS | 50.0% |
| CCCCTAGATTGAGAGACCAA+AGG | - | chr7_3:63276640-63276659 | Msa1115750:intron | 50.0% | |
| CTGGGTCTTAGTTTCTACGC+AGG | - | chr7_3:63277508-63277527 | Msa1115750:intron | 50.0% | |
| TCTCTAGTGTCCAGGTATGG+TGG | - | chr7_3:63278233-63278252 | Msa1115750:intron | 50.0% | |
| ! | TATGCCAGAACCCTCTGAAG+AGG | - | chr7_3:63278262-63278281 | Msa1115750:intron | 50.0% |
| GGAGAAAACGGCCTCTCAAC+AGG | - | chr7_3:63276130-63276149 | Msa1115750:intron | 55.0% | |
| ATTGGCATTGCGGCTCCATC+CGG | - | chr7_3:63276175-63276194 | Msa1115750:CDS | 55.0% | |
| CGGGCTCTCTATGATCAGAC+TGG | - | chr7_3:63276386-63276405 | Msa1115750:CDS | 55.0% | |
| GAGGCTACAGCTGCTGGTAA+GGG | - | chr7_3:63277440-63277459 | Msa1115750:CDS | 55.0% | |
| TGTTCGCGTCTCTAGTGTCC+AGG | - | chr7_3:63278225-63278244 | Msa1115750:intron | 55.0% | |
| GCGTCTCTAGTGTCCAGGTA+TGG | - | chr7_3:63278230-63278249 | Msa1115750:intron | 55.0% | |
| CTTGACGAGGCTACAGCTGC+TGG | - | chr7_3:63277434-63277453 | Msa1115750:CDS | 60.0% | |
| CGAGGCTACAGCTGCTGGTA+AGG | - | chr7_3:63277439-63277458 | Msa1115750:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 63275012 | 63278615 | 63275012 | ID=Msa1115750;Name=Msa1115750 |
| chr7_3 | mRNA | 63275012 | 63278615 | 63275012 | ID=Msa1115750-mRNA-1;Parent=Msa1115750;Name=Msa1115750-mRNA-1;_AED=0.11;_eAED=0.11;_QI=169|0.85|0.87|1|1|1|8|257|291 |
| chr7_3 | exon | 63275012 | 63275482 | 63275012 | ID=Msa1115750-mRNA-1:exon:14805;Parent=Msa1115750-mRNA-1 |
| chr7_3 | exon | 63275563 | 63275653 | 63275563 | ID=Msa1115750-mRNA-1:exon:14804;Parent=Msa1115750-mRNA-1 |
| chr7_3 | exon | 63276172 | 63276254 | 63276172 | ID=Msa1115750-mRNA-1:exon:14803;Parent=Msa1115750-mRNA-1 |
| chr7_3 | exon | 63276368 | 63276474 | 63276368 | ID=Msa1115750-mRNA-1:exon:14802;Parent=Msa1115750-mRNA-1 |
| chr7_3 | exon | 63276560 | 63276616 | 63276560 | ID=Msa1115750-mRNA-1:exon:14801;Parent=Msa1115750-mRNA-1 |
| chr7_3 | exon | 63277155 | 63277304 | 63277155 | ID=Msa1115750-mRNA-1:exon:14800;Parent=Msa1115750-mRNA-1 |
| chr7_3 | exon | 63277410 | 63277508 | 63277410 | ID=Msa1115750-mRNA-1:exon:14799;Parent=Msa1115750-mRNA-1 |
| chr7_3 | exon | 63278372 | 63278615 | 63278372 | ID=Msa1115750-mRNA-1:exon:14798;Parent=Msa1115750-mRNA-1 |
| chr7_3 | five_prime_UTR | 63278447 | 63278615 | 63278447 | ID=Msa1115750-mRNA-1:five_prime_utr;Parent=Msa1115750-mRNA-1 |
| chr7_3 | CDS | 63278372 | 63278446 | 63278372 | ID=Msa1115750-mRNA-1:cds;Parent=Msa1115750-mRNA-1 |
| chr7_3 | CDS | 63277410 | 63277508 | 63277410 | ID=Msa1115750-mRNA-1:cds;Parent=Msa1115750-mRNA-1 |
| chr7_3 | CDS | 63277155 | 63277304 | 63277155 | ID=Msa1115750-mRNA-1:cds;Parent=Msa1115750-mRNA-1 |
| chr7_3 | CDS | 63276560 | 63276616 | 63276560 | ID=Msa1115750-mRNA-1:cds;Parent=Msa1115750-mRNA-1 |
| chr7_3 | CDS | 63276368 | 63276474 | 63276368 | ID=Msa1115750-mRNA-1:cds;Parent=Msa1115750-mRNA-1 |
| chr7_3 | CDS | 63276172 | 63276254 | 63276172 | ID=Msa1115750-mRNA-1:cds;Parent=Msa1115750-mRNA-1 |
| chr7_3 | CDS | 63275563 | 63275653 | 63275563 | ID=Msa1115750-mRNA-1:cds;Parent=Msa1115750-mRNA-1 |
| chr7_3 | CDS | 63275269 | 63275482 | 63275269 | ID=Msa1115750-mRNA-1:cds;Parent=Msa1115750-mRNA-1 |
| chr7_3 | three_prime_UTR | 63275012 | 63275268 | 63275012 | ID=Msa1115750-mRNA-1:three_prime_utr;Parent=Msa1115750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
