AlfalfaGEDB | Msa0139700

M. sativa cultivar zhongmu-4 / Msa0139700

KEGG: -
GO: GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005794 GO:0005811 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031090 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0031984 GO:0034593 GO:0034595 GO:0036092 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043813 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0052866 GO:0071704 GO:0090407 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0106018 GO:1901576
PFAM: PF02383.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0139700	XP_024629567.1	96.694	242	7	1	1	242	1	241	4.63e-165	486

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0139700	sp\|Q94A27\|SAC2_ARATH	66.359	217	72	1	26	242	12	227	6.70e-103	318

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0139700	A0A396GEB7	96.694	242	7	1	1	242	1	241	2.21e-165	486

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0139700	0.810739	9.925000e-51	-8.615850e-47
Msa0010770	Msa0139700	0.806882	6.628121e-50	-8.615850e-47
Msa0014570	Msa0139700	0.806164	9.394023e-50	-8.615850e-47
Msa0026910	Msa0139700	0.813399	2.611088e-51	-8.615850e-47
Msa0027390	Msa0139700	0.819819	9.504470e-53	-8.615850e-47
Msa0031180	Msa0139700	0.823250	1.532429e-53	-8.615850e-47
Msa0042550	Msa0139700	0.810313	1.226494e-50	-8.615850e-47
Msa0043500	Msa0139700	0.821333	4.268754e-53	-8.615850e-47
Msa0045340	Msa0139700	0.803828	2.893937e-49	-8.615850e-47
Msa0054820	Msa0139700	0.837885	3.991358e-57	-8.615850e-47

Showing 1 to 10 of 246 entries

Previous1 2 3 4 5…25Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0139700	MtrunA17_Chr8g0344911	96.694	242	7	1	1	242	1	241	4.26e-169	486
Msa0139700	MtrunA17_Chr4g0069981	73.953	215	54	2	28	242	21	233	2.83e-113	343
Msa0139700	MtrunA17_Chr4g0014511	55.760	217	95	1	26	242	35	250	4.90e-80	257

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0139700	AT3G14205.1	66.359	217	72	1	26	242	12	227	6.81e-104	318
Msa0139700	AT3G43220.2	64.286	210	73	2	33	242	15	222	2.81e-92	286
Msa0139700	AT3G43220.3	64.286	210	73	2	33	242	15	222	1.63e-91	286
Msa0139700	AT3G43220.1	64.286	210	73	2	33	242	15	222	2.21e-91	286
Msa0139700	AT5G20840.1	64.286	210	73	2	33	242	24	231	4.85e-91	285
Msa0139700	AT1G17340.1	58.095	210	87	1	33	242	19	227	1.12e-83	265
Msa0139700	AT1G22620.1	57.143	210	89	1	33	242	34	242	3.46e-79	255
Msa0139700	AT3G14205.2	66.038	53	17	1	190	242	1	52	5.88e-16	77.0
Msa0139700	AT3G51460.1	22.549	204	134	5	26	225	4	187	1.11e-11	64.3
Msa0139700	AT3G51830.1	29.126	103	73	0	93	195	50	152	7.31e-11	62.0

Showing 1 to 10 of 10 entries

Previous1Next

Find 42 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTGTTACAACTTGCTA+TGG	0.480675	1_3:+73543087	Msa0139700:CDS
AACAAATTTAAGCCCTCCTG+TGG	0.608055	1_3:-73543073	None:intergenic
AAGGTGGGGACAAGTGCTGC+TGG	0.571459	1_3:+73541233	Msa0139700:CDS
ACAACTTGCTATGGAATCAT+CGG	0.580415	1_3:+73543096	Msa0139700:CDS
ACATGCTGCTTATTACAAAG+CGG	0.716900	1_3:+73543281	Msa0139700:CDS
AGATTGAAGAAGAGAAGGTG+GGG	0.558991	1_3:+73541219	Msa0139700:CDS
AGCTCAAAACTTTACATCAA+TGG	0.447201	1_3:-73541010	None:intergenic
AGGAAGATCGGCACAATATG+TGG	0.493549	1_3:+73543304	Msa0139700:CDS
AGGGATCTGAATTGTGATGA+TGG	0.556554	1_3:+73541196	Msa0139700:exon
AGTCTTCAAAAGAACTTATC+TGG	0.334802	1_3:+73544221	Msa0139700:CDS

Showing 1 to 10 of 42 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGCTCAAAACTTTACATCAA+TGG	-	chr1_3:73541013-73541032	None:intergenic	30.0%
AGATTGTTTCAATTGAGCAA+AGG	+	chr1_3:73541563-73541582	Msa0139700:intron	30.0%
ATCTGAAAACAATGGAGAAT+AGG	-	chr1_3:73541879-73541898	None:intergenic	30.0%
TTAGTCGGCAAAAAGTAATA+GGG	-	chr1_3:73542179-73542198	None:intergenic	30.0%
ATTAGTCGGCAAAAAGTAAT+AGG	-	chr1_3:73542180-73542199	None:intergenic	30.0%
AAAAAAGCAGACAGATTAGT+CGG	-	chr1_3:73542194-73542213	None:intergenic	30.0%
TCAGTATTCAGTAATATCAC+AGG	-	chr1_3:73542250-73542269	None:intergenic	30.0%
TATATTATCTGTGGGAGAAA+AGG	-	chr1_3:73542568-73542587	None:intergenic	30.0%
TTACGATGCTTTCTAATTAC+CGG	+	chr1_3:73542708-73542727	Msa0139700:intron	30.0%
AATCTCTGAGCATAGAAAAA+TGG	-	chr1_3:73542898-73542917	None:intergenic	30.0%

Showing 1 to 10 of 168 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	73540771	73544373	73540771	ID=Msa0139700;Name=Msa0139700
chr1_3	mRNA	73540771	73544373	73540771	ID=Msa0139700-mRNA-1;Parent=Msa0139700;Name=Msa0139700-mRNA-1;_AED=0.14;_eAED=0.14;_QI=421\|1\|0.8\|1\|0.75\|0.6\|5\|0\|242
chr1_3	exon	73540771	73541101	73540771	ID=Msa0139700-mRNA-1:exon:25602;Parent=Msa0139700-mRNA-1
chr1_3	exon	73541122	73541340	73541122	ID=Msa0139700-mRNA-1:exon:25603;Parent=Msa0139700-mRNA-1
chr1_3	exon	73542913	73543117	73542913	ID=Msa0139700-mRNA-1:exon:25604;Parent=Msa0139700-mRNA-1
chr1_3	exon	73543254	73543419	73543254	ID=Msa0139700-mRNA-1:exon:25605;Parent=Msa0139700-mRNA-1
chr1_3	exon	73544148	73544373	73544148	ID=Msa0139700-mRNA-1:exon:25606;Parent=Msa0139700-mRNA-1
chr1_3	five_prime_UTR	73540771	73541101	73540771	ID=Msa0139700-mRNA-1:five_prime_utr;Parent=Msa0139700-mRNA-1
chr1_3	five_prime_UTR	73541122	73541211	73541122	ID=Msa0139700-mRNA-1:five_prime_utr;Parent=Msa0139700-mRNA-1
chr1_3	CDS	73541212	73541340	73541212	ID=Msa0139700-mRNA-1:cds;Parent=Msa0139700-mRNA-1
chr1_3	CDS	73542913	73543117	73542913	ID=Msa0139700-mRNA-1:cds;Parent=Msa0139700-mRNA-1
chr1_3	CDS	73543254	73543419	73543254	ID=Msa0139700-mRNA-1:cds;Parent=Msa0139700-mRNA-1
chr1_3	CDS	73544148	73544373	73544148	ID=Msa0139700-mRNA-1:cds;Parent=Msa0139700-mRNA-1

Gene Sequence

>Msa0139700

ATGATGGAGATTGAAGAAGAGAAGGTGGGGACAAGTGCTGCTGGTGTTGAAGTTGGTGCTGGTTTTGAAGATGGAGTTGACTCTAAGTTTTGCTACATGCAGAAGTTTAGGCTCTATGAAACTTCTCAGAGATTCTATATGATTGGAAGAGACAAAAACAGAACATTTTGGAAGGTCTTAAAGATTGACAGATTGGATCAGTCTGAGTTAAATATCTCTGAAGATCAAACAAAATACTCAGAAATTGAGTGTTGTGAAATGCTGAAGCGTCTACAGGATGGAAACTTGGCCACAGGAGGGCTTAAATTTGTTACAACTTGCTATGGAATCATCGGGTTTATCAAATTTCTTGAGCCATACTACATGCTGCTTATTACAAAGCGGAGGAAGATCGGCACAATATGTGGACACACTATATATGCTATCACAAAGAGTGAAATGATTCCAATTCCACATTCAAGTGTGCGATCAAATTTGGCATTTTCTAAGGATGAGAACAGATACAAGAAGTTTCTATGCAGTATGGATCTTACAAAGGACTTCTTTTACAGCTACTCATACAACATTATGCTTAGTCTTCAAAAGAACTTATCTGGTCATAATGTCACGGGACAATCACTATATGAAACACTGTTTGTTTGGAACGAGTTCTTAACTCGTGGAATCAGGAATAATCTCCAGAATACTTCCTGGACTGTTGCCTTAGTCTATGGATTTTTTAAACAG

Protein sequence

>Msa0139700

MMEIEEEKVGTSAAGVEVGAGFEDGVDSKFCYMQKFRLYETSQRFYMIGRDKNRTFWKVLKIDRLDQSELNISEDQTKYSEIECCEMLKRLQDGNLATGGLKFVTTCYGIIGFIKFLEPYYMLLITKRRKIGTICGHTIYAITKSEMIPIPHSSVRSNLAFSKDENRYKKFLCSMDLTKDFFYSYSYNIMLSLQKNLSGHNVTGQSLYETLFVWNEFLTRGIRNNLQNTSWTVALVYGFFKQ