AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139700 MtrunA17_Chr8g0344911 96.694 242 7 1 1 242 1 241 4.26e-169 486
Msa0139700 MtrunA17_Chr4g0069981 73.953 215 54 2 28 242 21 233 2.83e-113 343
Msa0139700 MtrunA17_Chr4g0014511 55.760 217 95 1 26 242 35 250 4.90e-80 257
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139700 AT3G14205.1 66.359 217 72 1 26 242 12 227 6.81e-104 318
Msa0139700 AT3G43220.2 64.286 210 73 2 33 242 15 222 2.81e-92 286
Msa0139700 AT3G43220.3 64.286 210 73 2 33 242 15 222 1.63e-91 286
Msa0139700 AT3G43220.1 64.286 210 73 2 33 242 15 222 2.21e-91 286
Msa0139700 AT5G20840.1 64.286 210 73 2 33 242 24 231 4.85e-91 285
Msa0139700 AT1G17340.1 58.095 210 87 1 33 242 19 227 1.12e-83 265
Msa0139700 AT1G22620.1 57.143 210 89 1 33 242 34 242 3.46e-79 255
Msa0139700 AT3G14205.2 66.038 53 17 1 190 242 1 52 5.88e-16 77.0
Msa0139700 AT3G51460.1 22.549 204 134 5 26 225 4 187 1.11e-11 64.3
Msa0139700 AT3G51830.1 29.126 103 73 0 93 195 50 152 7.31e-11 62.0

Find 42 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAGTGTGCGATCAAATT+TGG 0.181811 1_3:+73543375 Msa0139700:CDS
TGGACTGTTGCCTTAGTCTA+TGG 0.221556 1_3:+73544338 Msa0139700:CDS
TATATGAAACACTGTTTGTT+TGG 0.269818 1_3:+73544267 Msa0139700:CDS
AGTCTTCAAAAGAACTTATC+TGG 0.334802 1_3:+73544221 Msa0139700:CDS
CGCACACTTGAATGTGGAAT+TGG 0.369716 1_3:-73543364 None:intergenic
CAACAGTCCAGGAAGTATTC+TGG 0.370306 1_3:-73544325 None:intergenic
CAAGAAGTTTCTATGCAGTA+TGG 0.374428 1_3:+73544151 Msa0139700:CDS
GGTCTTAAAGATTGACAGAT+TGG 0.396654 1_3:+73542957 Msa0139700:CDS
GTAATAAGCAGCATGTAGTA+TGG 0.398368 1_3:-73543274 None:intergenic
AGTTCTTAACTCGTGGAATC+AGG 0.401648 1_3:+73544294 Msa0139700:CDS
GCTCAGAGATTCTATATGAT+TGG 0.401655 1_3:+73542907 Msa0139700:intron
TTTGCTACATGCAGAAGTTT+AGG 0.409804 1_3:+73541300 Msa0139700:CDS
GCTGGTGTTGAAGTTGGTGC+TGG 0.420803 1_3:+73541251 Msa0139700:CDS
ATAATCTCCAGAATACTTCC+TGG 0.425618 1_3:+73544318 Msa0139700:CDS
AGCTCAAAACTTTACATCAA+TGG 0.447201 1_3:-73541010 None:intergenic
AAATTTGTTACAACTTGCTA+TGG 0.480675 1_3:+73543087 Msa0139700:CDS
TAGGCTCTATGAAACTTCTC+AGG 0.480764 1_3:+73541319 Msa0139700:CDS
AGGAAGATCGGCACAATATG+TGG 0.493549 1_3:+73543304 Msa0139700:CDS
GGAGATTGAAGAAGAGAAGG+TGG 0.516279 1_3:+73541217 Msa0139700:CDS
GAGATTGAAGAAGAGAAGGT+GGG 0.520849 1_3:+73541218 Msa0139700:CDS
ATTACAAAGCGGAGGAAGAT+CGG 0.531117 1_3:+73543292 Msa0139700:CDS
TGAAATGCTGAAGCGTCTAC+AGG 0.535888 1_3:+73543038 Msa0139700:CDS
GCGTCTACAGGATGGAAACT+TGG 0.538498 1_3:+73543050 Msa0139700:CDS
AGTGCTGCTGGTGTTGAAGT+TGG 0.547360 1_3:+73541245 Msa0139700:CDS
ATAGACTAAGGCAACAGTCC+AGG 0.549517 1_3:-73544336 None:intergenic
GATGGAGATTGAAGAAGAGA+AGG 0.551345 1_3:+73541214 Msa0139700:CDS
AGGGATCTGAATTGTGATGA+TGG 0.556554 1_3:+73541196 Msa0139700:exon
AGATTGAAGAAGAGAAGGTG+GGG 0.558991 1_3:+73541219 Msa0139700:CDS
TTTGATCGCACACTTGAATG+TGG 0.561611 1_3:-73543370 None:intergenic
AAGGTGGGGACAAGTGCTGC+TGG 0.571459 1_3:+73541233 Msa0139700:CDS
ACAACTTGCTATGGAATCAT+CGG 0.580415 1_3:+73543096 Msa0139700:CDS
TTATCTGGTCATAATGTCAC+GGG 0.584534 1_3:+73544236 Msa0139700:CDS
TGGAACGAGTTCTTAACTCG+TGG 0.592450 1_3:+73544287 Msa0139700:CDS
ATGCTGAAGCGTCTACAGGA+TGG 0.593299 1_3:+73543042 Msa0139700:CDS
CTTATCTGGTCATAATGTCA+CGG 0.598724 1_3:+73544235 Msa0139700:CDS
CAGGATGGAAACTTGGCCAC+AGG 0.599825 1_3:+73543057 Msa0139700:CDS
GATGGAAACTTGGCCACAGG+AGG 0.606318 1_3:+73543060 Msa0139700:CDS
AACAAATTTAAGCCCTCCTG+TGG 0.608055 1_3:-73543073 None:intergenic
ATGCAGTATGGATCTTACAA+AGG 0.656804 1_3:+73544163 Msa0139700:CDS
ATGGAAACTTGGCCACAGGA+GGG 0.658115 1_3:+73543061 Msa0139700:CDS
TGCTGCTTATTACAAAGCGG+AGG 0.690628 1_3:+73543284 Msa0139700:CDS
ACATGCTGCTTATTACAAAG+CGG 0.716900 1_3:+73543281 Msa0139700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATGTTAACTTAAAT+AGG + chr1_3:73542749-73542768 Msa0139700:intron 10.0%
!! AAAAAAAAAAACATTATGTG+TGG + chr1_3:73540986-73541005 Msa0139700:five_prime_UTR 15.0%
!!! TTTTTATTGTACTTGTTTTT+GGG + chr1_3:73541032-73541051 Msa0139700:five_prime_UTR 15.0%
!!! TTGTTTTTGTGTTTTATTTT+TGG + chr1_3:73541481-73541500 Msa0139700:intron 15.0%
!! TTTGTTTAATTATTCATTCA+TGG + chr1_3:73541528-73541547 Msa0139700:intron 15.0%
!! ATCTTTATAAATGAGAAATA+TGG + chr1_3:73542305-73542324 Msa0139700:intron 15.0%
!!! ATTGTTATTGTTATGAATTA+CGG + chr1_3:73543520-73543539 Msa0139700:intron 15.0%
!!! TTCGTTTTTTAATATACATT+TGG + chr1_3:73544008-73544027 Msa0139700:intron 15.0%
!!! CTTTTTATTGTACTTGTTTT+TGG + chr1_3:73541031-73541050 Msa0139700:five_prime_UTR 20.0%
!!! ACATGAATTGTTTTTTAATG+AGG + chr1_3:73541627-73541646 Msa0139700:intron 20.0%
!!! AACGTTTTTTTTTTCCTAAA+AGG + chr1_3:73542369-73542388 Msa0139700:intron 20.0%
!! CTTATCATTATATTATCTGT+GGG - chr1_3:73542576-73542595 None:intergenic 20.0%
!!! AAAGTTTTACTATGATATAG+AGG - chr1_3:73543132-73543151 None:intergenic 20.0%
!!! TATGGTATCTCTTTTTATTT+AGG + chr1_3:73543232-73543251 Msa0139700:intron 20.0%
!!! ATGGTATCTCTTTTTATTTA+GGG + chr1_3:73543233-73543252 Msa0139700:intron 20.0%
!! ACAATAACAATTAAGTACAA+TGG - chr1_3:73543511-73543530 None:intergenic 20.0%
!!! TTATGAATTACGGTTTTTAT+CGG + chr1_3:73543530-73543549 Msa0139700:intron 20.0%
!! TACAAAGAAAAACTAAAATG+TGG - chr1_3:73543623-73543642 None:intergenic 20.0%
!!! TTTATCGTAAGTTCATTTTA+CGG + chr1_3:73543887-73543906 Msa0139700:intron 20.0%
!! TTTAAAAAATCCATAGACTA+AGG - chr1_3:73544351-73544370 None:intergenic 20.0%
! TTTAGGAAATGGAAAAAAAC+AGG - chr1_3:73540862-73540881 None:intergenic 25.0%
!!! TTTTTTAAGGAATCAGAAGA+AGG - chr1_3:73540893-73540912 None:intergenic 25.0%
!!! GAGAAAAAGTAGCTTTTTTA+AGG - chr1_3:73540906-73540925 None:intergenic 25.0%
!!! TTTGTGTTGATTTTTTCTGT+TGG + chr1_3:73541124-73541143 Msa0139700:five_prime_UTR 25.0%
!! GTTTTTGAATTCTGTTCAAT+TGG + chr1_3:73541693-73541712 Msa0139700:intron 25.0%
! GAAAGATTATAATCCATTTG+TGG + chr1_3:73541771-73541790 Msa0139700:intron 25.0%
!! TCAAATGATTTTGCAGAAAA+TGG + chr1_3:73541843-73541862 Msa0139700:intron 25.0%
!! AAAGTAATAGCTATCCTTTT+AGG - chr1_3:73542386-73542405 None:intergenic 25.0%
! GCTTATCATTATATTATCTG+TGG - chr1_3:73542577-73542596 None:intergenic 25.0%
!! ATAATGATAAGCTGTTGATT+TGG + chr1_3:73542585-73542604 Msa0139700:intron 25.0%
!! TTTGGAAAGACATTTAAGTT+TGG + chr1_3:73542603-73542622 Msa0139700:intron 25.0%
!!! AAATTTGTTACAACTTGCTA+TGG + chr1_3:73543087-73543106 Msa0139700:CDS 25.0%
! TTTACTATGATATAGAGGAT+AGG - chr1_3:73543127-73543146 None:intergenic 25.0%
! ATAATAACTCAACTGTCTTA+TGG + chr1_3:73543214-73543233 Msa0139700:intron 25.0%
!! ATCAAATTTGGCATTTTCTA+AGG + chr1_3:73543387-73543406 Msa0139700:CDS 25.0%
! ATGAACTTATGAAAACAACA+AGG - chr1_3:73543867-73543886 None:intergenic 25.0%
! GTAACTATTTGAGTAAAACA+AGG + chr1_3:73543951-73543970 Msa0139700:intron 25.0%
! ATACATTTGGTTAGAGTTAT+TGG + chr1_3:73544021-73544040 Msa0139700:intron 25.0%
! AGATGGTCTATATTAAATGA+AGG - chr1_3:73544089-73544108 None:intergenic 25.0%
! TATATGAAACACTGTTTGTT+TGG + chr1_3:73544267-73544286 Msa0139700:CDS 25.0%
!!! AGGTGTTTAGTTTTAGGAAA+TGG - chr1_3:73540873-73540892 None:intergenic 30.0%
!!! AGAAGAAGGTGTTTAGTTTT+AGG - chr1_3:73540879-73540898 None:intergenic 30.0%
AGCTCAAAACTTTACATCAA+TGG - chr1_3:73541013-73541032 None:intergenic 30.0%
AGATTGTTTCAATTGAGCAA+AGG + chr1_3:73541563-73541582 Msa0139700:intron 30.0%
! ATTTTGCAGAAAATGGCTTA+TGG + chr1_3:73541850-73541869 Msa0139700:intron 30.0%
ATCTGAAAACAATGGAGAAT+AGG - chr1_3:73541879-73541898 None:intergenic 30.0%
TTAGTCGGCAAAAAGTAATA+GGG - chr1_3:73542179-73542198 None:intergenic 30.0%
ATTAGTCGGCAAAAAGTAAT+AGG - chr1_3:73542180-73542199 None:intergenic 30.0%
AAAAAAGCAGACAGATTAGT+CGG - chr1_3:73542194-73542213 None:intergenic 30.0%
TCAGTATTCAGTAATATCAC+AGG - chr1_3:73542250-73542269 None:intergenic 30.0%
!! TACTGATGAAGTGTTTTTAC+AGG + chr1_3:73542264-73542283 Msa0139700:intron 30.0%
! TTGTCTTATTCTCCTCAATT+TGG + chr1_3:73542408-73542427 Msa0139700:intron 30.0%
TATATTATCTGTGGGAGAAA+AGG - chr1_3:73542568-73542587 None:intergenic 30.0%
TTACGATGCTTTCTAATTAC+CGG + chr1_3:73542708-73542727 Msa0139700:intron 30.0%
!! AATATACGAAAGAGCACTAT+TGG + chr1_3:73542860-73542879 Msa0139700:intron 30.0%
AATCTCTGAGCATAGAAAAA+TGG - chr1_3:73542898-73542917 None:intergenic 30.0%
! GAGACAAAAACAGAACATTT+TGG + chr1_3:73542932-73542951 Msa0139700:CDS 30.0%
! CAAAAACAGAACATTTTGGA+AGG + chr1_3:73542936-73542955 Msa0139700:CDS 30.0%
ACAATTAAGTACAATGGACA+GGG - chr1_3:73543505-73543524 None:intergenic 30.0%
AACAATTAAGTACAATGGAC+AGG - chr1_3:73543506-73543525 None:intergenic 30.0%
AACTTATGAAAACAACAAGG+AGG - chr1_3:73543864-73543883 None:intergenic 30.0%
! AGTAAAACAAGGTATTTCCA+GGG + chr1_3:73543962-73543981 Msa0139700:intron 30.0%
AATATAGACCATCTCACTAA+TGG + chr1_3:73544095-73544114 Msa0139700:intron 30.0%
AAAAAAGTCCATTAGTGAGA+TGG - chr1_3:73544106-73544125 None:intergenic 30.0%
AGTCTTCAAAAGAACTTATC+TGG + chr1_3:73544221-73544240 Msa0139700:CDS 30.0%
!!! AGCTTTGTTTTGAAGCTCAA+GGG + chr1_3:73541177-73541196 Msa0139700:five_prime_UTR 35.0%
TTTGCTACATGCAGAAGTTT+AGG + chr1_3:73541300-73541319 Msa0139700:CDS 35.0%
GTGGATTCTTCAAGAAAACA+TGG + chr1_3:73541722-73541741 Msa0139700:intron 35.0%
TATAATCTTTCAAGCCAAGC+AGG - chr1_3:73541762-73541781 None:intergenic 35.0%
AACACAAATGACACCACAAA+TGG - chr1_3:73541787-73541806 None:intergenic 35.0%
! TCTCCATTGTTTTCAGATTG+TGG + chr1_3:73541881-73541900 Msa0139700:intron 35.0%
! CTCCATTGTTTTCAGATTGT+GGG + chr1_3:73541882-73541901 Msa0139700:intron 35.0%
! TCCATTGTTTTCAGATTGTG+GGG + chr1_3:73541883-73541902 Msa0139700:intron 35.0%
GCTTATGCCAATAAGCTATT+TGG + chr1_3:73542026-73542045 Msa0139700:intron 35.0%
TATGCCAATAAGCTATTTGG+AGG + chr1_3:73542029-73542048 Msa0139700:intron 35.0%
AGTTCCTCCAAATAGCTTAT+TGG - chr1_3:73542036-73542055 None:intergenic 35.0%
AAAAAGTAATAGGGGGAGTT+TGG - chr1_3:73542170-73542189 None:intergenic 35.0%
TAGTCGGCAAAAAGTAATAG+GGG - chr1_3:73542178-73542197 None:intergenic 35.0%
GGAATCTTTCAAGAGAAATG+TGG - chr1_3:73542229-73542248 None:intergenic 35.0%
TCCTCAATTTGGTAAGATTG+AGG + chr1_3:73542419-73542438 Msa0139700:intron 35.0%
TCCTCAATCTTACCAAATTG+AGG - chr1_3:73542423-73542442 None:intergenic 35.0%
AGATTCTGGATATAGTCACA+TGG - chr1_3:73542449-73542468 None:intergenic 35.0%
GTGACTATATCCAGAATCTT+TGG + chr1_3:73542450-73542469 Msa0139700:intron 35.0%
CAGAATCTTTGGCTGAAAAT+GGG + chr1_3:73542461-73542480 Msa0139700:intron 35.0%
AGAATCTTTGGCTGAAAATG+GGG + chr1_3:73542462-73542481 Msa0139700:intron 35.0%
AATGGGGAAAAGGCTAATTA+AGG + chr1_3:73542478-73542497 Msa0139700:intron 35.0%
! TTCTGGAAATGGGATCTAAA+AGG + chr1_3:73542535-73542554 Msa0139700:intron 35.0%
! AACGACAAGATTTTCTCAGA+AGG - chr1_3:73542825-73542844 None:intergenic 35.0%
GCTCAGAGATTCTATATGAT+TGG + chr1_3:73542907-73542926 Msa0139700:intron 35.0%
GGTCTTAAAGATTGACAGAT+TGG + chr1_3:73542957-73542976 Msa0139700:CDS 35.0%
!! ACAACTTGCTATGGAATCAT+CGG + chr1_3:73543096-73543115 Msa0139700:CDS 35.0%
GTAATAAGCAGCATGTAGTA+TGG - chr1_3:73543277-73543296 None:intergenic 35.0%
! ACATGCTGCTTATTACAAAG+CGG + chr1_3:73543281-73543300 Msa0139700:CDS 35.0%
TTCAAGTGTGCGATCAAATT+TGG + chr1_3:73543375-73543394 Msa0139700:CDS 35.0%
!! CATTTTCTAAGGATGAGAAC+AGG + chr1_3:73543398-73543417 Msa0139700:CDS 35.0%
ATGTACCTGTAATGTGTCTA+TGG + chr1_3:73543438-73543457 Msa0139700:intron 35.0%
ATGTACCATAGACACATTAC+AGG - chr1_3:73543446-73543465 None:intergenic 35.0%
! TTCATTTTACGGAACTGTAC+AGG + chr1_3:73543898-73543917 Msa0139700:intron 35.0%
! GAGTAAAACAAGGTATTTCC+AGG + chr1_3:73543961-73543980 Msa0139700:intron 35.0%
CAAGAAGTTTCTATGCAGTA+TGG + chr1_3:73544151-73544170 Msa0139700:CDS 35.0%
ATGCAGTATGGATCTTACAA+AGG + chr1_3:73544163-73544182 Msa0139700:CDS 35.0%
CTTATCTGGTCATAATGTCA+CGG + chr1_3:73544235-73544254 Msa0139700:CDS 35.0%
TTATCTGGTCATAATGTCAC+GGG + chr1_3:73544236-73544255 Msa0139700:CDS 35.0%
ATAATCTCCAGAATACTTCC+TGG + chr1_3:73544318-73544337 Msa0139700:CDS 35.0%
!!! GAGCTTTGTTTTGAAGCTCA+AGG + chr1_3:73541176-73541195 Msa0139700:five_prime_UTR 40.0%
AGGGATCTGAATTGTGATGA+TGG + chr1_3:73541196-73541215 Msa0139700:exon 40.0%
GATGGAGATTGAAGAAGAGA+AGG + chr1_3:73541214-73541233 Msa0139700:CDS 40.0%
GAGATTGAAGAAGAGAAGGT+GGG + chr1_3:73541218-73541237 Msa0139700:CDS 40.0%
AGATTGAAGAAGAGAAGGTG+GGG + chr1_3:73541219-73541238 Msa0139700:CDS 40.0%
TAGGCTCTATGAAACTTCTC+AGG + chr1_3:73541319-73541338 Msa0139700:CDS 40.0%
AAGAAAACATGGATCCATCC+AGG + chr1_3:73541733-73541752 Msa0139700:intron 40.0%
! CCATTGTTTTCAGATTGTGG+GGG + chr1_3:73541884-73541903 Msa0139700:intron 40.0%
AGTCGGCAAAAAGTAATAGG+GGG - chr1_3:73542177-73542196 None:intergenic 40.0%
! CCATTTTCAGCCAAAGATTC+TGG - chr1_3:73542463-73542482 None:intergenic 40.0%
CCAGAATCTTTGGCTGAAAA+TGG + chr1_3:73542460-73542479 Msa0139700:intron 40.0%
TTTGGCTGAAAATGGGGAAA+AGG + chr1_3:73542468-73542487 Msa0139700:intron 40.0%
!! AAAATGCCGCTTTCTTCTTC+TGG + chr1_3:73542518-73542537 Msa0139700:intron 40.0%
CCATTTCCAGAAGAAGAAAG+CGG - chr1_3:73542527-73542546 None:intergenic 40.0%
! CGCTTTCTTCTTCTGGAAAT+GGG + chr1_3:73542525-73542544 Msa0139700:intron 40.0%
TTATCTGTGGGAGAAAAGGA+AGG - chr1_3:73542564-73542583 None:intergenic 40.0%
AACAAATTTAAGCCCTCCTG+TGG - chr1_3:73543076-73543095 None:intergenic 40.0%
ATTACAAAGCGGAGGAAGAT+CGG + chr1_3:73543292-73543311 Msa0139700:CDS 40.0%
TTTGATCGCACACTTGAATG+TGG - chr1_3:73543373-73543392 None:intergenic 40.0%
AGTACCACAGAAAGATGAGA+GGG - chr1_3:73543718-73543737 None:intergenic 40.0%
AGTTCTTAACTCGTGGAATC+AGG + chr1_3:73544294-73544313 Msa0139700:CDS 40.0%
GGAGATTGAAGAAGAGAAGG+TGG + chr1_3:73541217-73541236 Msa0139700:CDS 45.0%
!!! GTTGGTGCTGGTTTTGAAGA+TGG + chr1_3:73541263-73541282 Msa0139700:CDS 45.0%
! GTGCAGTTTTCTTGTTCTGC+TGG + chr1_3:73541456-73541475 Msa0139700:intron 45.0%
TCTGTTCAATTGGATTCGCG+TGG + chr1_3:73541703-73541722 Msa0139700:intron 45.0%
CCCCCACAATCTGAAAACAA+TGG - chr1_3:73541887-73541906 None:intergenic 45.0%
!! TTTCAGATTGTGGGGGCATT+TGG + chr1_3:73541891-73541910 Msa0139700:intron 45.0%
CAACATGCATGACACTGTGA+TGG - chr1_3:73542348-73542367 None:intergenic 45.0%
! CCGCTTTCTTCTTCTGGAAA+TGG + chr1_3:73542524-73542543 Msa0139700:intron 45.0%
AGACAAACGAAGTTCGTTGC+CGG - chr1_3:73542730-73542749 None:intergenic 45.0%
!! ACGAAAGAGCACTATTGGTG+TGG + chr1_3:73542865-73542884 Msa0139700:intron 45.0%
! TGAAATGCTGAAGCGTCTAC+AGG + chr1_3:73543038-73543057 Msa0139700:CDS 45.0%
! TGCTGCTTATTACAAAGCGG+AGG + chr1_3:73543284-73543303 Msa0139700:CDS 45.0%
AGGAAGATCGGCACAATATG+TGG + chr1_3:73543304-73543323 Msa0139700:CDS 45.0%
CGCACACTTGAATGTGGAAT+TGG - chr1_3:73543367-73543386 None:intergenic 45.0%
TTCAGTGCGTATGCACAATG+TGG + chr1_3:73543677-73543696 Msa0139700:intron 45.0%
TCAGTGCGTATGCACAATGT+GGG + chr1_3:73543678-73543697 Msa0139700:intron 45.0%
!! AAGATGAGAGGGTTGACTTG+AGG - chr1_3:73543707-73543726 None:intergenic 45.0%
TCAACCCTCTCATCTTTCTG+TGG + chr1_3:73543711-73543730 Msa0139700:intron 45.0%
GAGTACCACAGAAAGATGAG+AGG - chr1_3:73543719-73543738 None:intergenic 45.0%
AGGTATTTCCAGGGTTCACA+TGG + chr1_3:73543971-73543990 Msa0139700:intron 45.0%
GGTATTTCCAGGGTTCACAT+GGG + chr1_3:73543972-73543991 Msa0139700:intron 45.0%
TGGAACGAGTTCTTAACTCG+TGG + chr1_3:73544287-73544306 Msa0139700:CDS 45.0%
!! CAACAGTCCAGGAAGTATTC+TGG - chr1_3:73544328-73544347 None:intergenic 45.0%
ATAGACTAAGGCAACAGTCC+AGG - chr1_3:73544339-73544358 None:intergenic 45.0%
TGGACTGTTGCCTTAGTCTA+TGG + chr1_3:73544338-73544357 Msa0139700:CDS 45.0%
!!! GAAATATTTTTTTTTTTTTA+TGG + chr1_3:73541590-73541609 Msa0139700:intron 5.0%
!!! TATTATTATTATTTTTCAAA+CGG - chr1_3:73543197-73543216 None:intergenic 5.0%
! AGTGCTGCTGGTGTTGAAGT+TGG + chr1_3:73541245-73541264 Msa0139700:CDS 50.0%
ATCCATCCAGGTTACCTGCT+TGG + chr1_3:73541745-73541764 Msa0139700:intron 50.0%
TTCAAGCCAAGCAGGTAACC+TGG - chr1_3:73541754-73541773 None:intergenic 50.0%
ACATTGCGCACTTGCGACAA+GGG - chr1_3:73542674-73542693 None:intergenic 50.0%
! ATGCTGAAGCGTCTACAGGA+TGG + chr1_3:73543042-73543061 Msa0139700:CDS 50.0%
GCGTCTACAGGATGGAAACT+TGG + chr1_3:73543050-73543069 Msa0139700:CDS 50.0%
ATGGAAACTTGGCCACAGGA+GGG + chr1_3:73543061-73543080 Msa0139700:CDS 50.0%
!! GCTGGTGTTGAAGTTGGTGC+TGG + chr1_3:73541251-73541270 Msa0139700:CDS 55.0%
AGCCAAGCAGGTAACCTGGA+TGG - chr1_3:73541750-73541769 None:intergenic 55.0%
CACATTGCGCACTTGCGACA+AGG - chr1_3:73542675-73542694 None:intergenic 55.0%
CAGGATGGAAACTTGGCCAC+AGG + chr1_3:73543057-73543076 Msa0139700:CDS 55.0%
GATGGAAACTTGGCCACAGG+AGG + chr1_3:73543060-73543079 Msa0139700:CDS 55.0%
TCCAGGGTTCACATGGGAGA+CGG + chr1_3:73543978-73543997 Msa0139700:intron 55.0%
! AAGGTGGGGACAAGTGCTGC+TGG + chr1_3:73541233-73541252 Msa0139700:CDS 60.0%
GCGACGTTGCACGTCATGCA+TGG - chr1_3:73542646-73542665 None:intergenic 60.0%
GCCGTCTCCCATGTGAACCC+TGG - chr1_3:73543982-73544001 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 73540771 73544373 73540771 ID=Msa0139700;Name=Msa0139700
chr1_3 mRNA 73540771 73544373 73540771 ID=Msa0139700-mRNA-1;Parent=Msa0139700;Name=Msa0139700-mRNA-1;_AED=0.14;_eAED=0.14;_QI=421|1|0.8|1|0.75|0.6|5|0|242
chr1_3 exon 73540771 73541101 73540771 ID=Msa0139700-mRNA-1:exon:25602;Parent=Msa0139700-mRNA-1
chr1_3 exon 73541122 73541340 73541122 ID=Msa0139700-mRNA-1:exon:25603;Parent=Msa0139700-mRNA-1
chr1_3 exon 73542913 73543117 73542913 ID=Msa0139700-mRNA-1:exon:25604;Parent=Msa0139700-mRNA-1
chr1_3 exon 73543254 73543419 73543254 ID=Msa0139700-mRNA-1:exon:25605;Parent=Msa0139700-mRNA-1
chr1_3 exon 73544148 73544373 73544148 ID=Msa0139700-mRNA-1:exon:25606;Parent=Msa0139700-mRNA-1
chr1_3 five_prime_UTR 73540771 73541101 73540771 ID=Msa0139700-mRNA-1:five_prime_utr;Parent=Msa0139700-mRNA-1
chr1_3 five_prime_UTR 73541122 73541211 73541122 ID=Msa0139700-mRNA-1:five_prime_utr;Parent=Msa0139700-mRNA-1
chr1_3 CDS 73541212 73541340 73541212 ID=Msa0139700-mRNA-1:cds;Parent=Msa0139700-mRNA-1
chr1_3 CDS 73542913 73543117 73542913 ID=Msa0139700-mRNA-1:cds;Parent=Msa0139700-mRNA-1
chr1_3 CDS 73543254 73543419 73543254 ID=Msa0139700-mRNA-1:cds;Parent=Msa0139700-mRNA-1
chr1_3 CDS 73544148 73544373 73544148 ID=Msa0139700-mRNA-1:cds;Parent=Msa0139700-mRNA-1
Gene Sequence

>Msa0139700

ATGATGGAGATTGAAGAAGAGAAGGTGGGGACAAGTGCTGCTGGTGTTGAAGTTGGTGCTGGTTTTGAAGATGGAGTTGACTCTAAGTTTTGCTACATGCAGAAGTTTAGGCTCTATGAAACTTCTCAGAGATTCTATATGATTGGAAGAGACAAAAACAGAACATTTTGGAAGGTCTTAAAGATTGACAGATTGGATCAGTCTGAGTTAAATATCTCTGAAGATCAAACAAAATACTCAGAAATTGAGTGTTGTGAAATGCTGAAGCGTCTACAGGATGGAAACTTGGCCACAGGAGGGCTTAAATTTGTTACAACTTGCTATGGAATCATCGGGTTTATCAAATTTCTTGAGCCATACTACATGCTGCTTATTACAAAGCGGAGGAAGATCGGCACAATATGTGGACACACTATATATGCTATCACAAAGAGTGAAATGATTCCAATTCCACATTCAAGTGTGCGATCAAATTTGGCATTTTCTAAGGATGAGAACAGATACAAGAAGTTTCTATGCAGTATGGATCTTACAAAGGACTTCTTTTACAGCTACTCATACAACATTATGCTTAGTCTTCAAAAGAACTTATCTGGTCATAATGTCACGGGACAATCACTATATGAAACACTGTTTGTTTGGAACGAGTTCTTAACTCGTGGAATCAGGAATAATCTCCAGAATACTTCCTGGACTGTTGCCTTAGTCTATGGATTTTTTAAACAG

Protein sequence

>Msa0139700

MMEIEEEKVGTSAAGVEVGAGFEDGVDSKFCYMQKFRLYETSQRFYMIGRDKNRTFWKVLKIDRLDQSELNISEDQTKYSEIECCEMLKRLQDGNLATGGLKFVTTCYGIIGFIKFLEPYYMLLITKRRKIGTICGHTIYAITKSEMIPIPHSSVRSNLAFSKDENRYKKFLCSMDLTKDFFYSYSYNIMLSLQKNLSGHNVTGQSLYETLFVWNEFLTRGIRNNLQNTSWTVALVYGFFKQ