Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595850 | XP_003605677.3 | 97.273 | 330 | 9 | 0 | 1 | 330 | 1 | 330 | 0.0 | 653 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595850 | sp|Q9SV68|QORH_ARATH | 74.242 | 330 | 84 | 1 | 1 | 330 | 1 | 329 | 1.44e-175 | 492 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0388840 | Msa0595850 | 0.801764 | 7.719374e-49 | -8.615850e-47 |
| Msa0309550 | Msa0595850 | 0.808974 | 2.379647e-50 | -8.615850e-47 |
| Msa0356960 | Msa0595850 | 0.806380 | 8.462676e-50 | -8.615850e-47 |
| Msa0539750 | Msa0595850 | 0.820948 | 5.236702e-53 | -8.615850e-47 |
| Msa0543900 | Msa0595850 | 0.833180 | 6.182886e-56 | -8.615850e-47 |
| Msa0595850 | Msa0599770 | 0.840613 | 7.824446e-58 | -8.615850e-47 |
| Msa0595850 | Msa0631980 | 0.804424 | 2.174758e-49 | -8.615850e-47 |
| Msa0595850 | Msa0631990 | 0.851938 | 6.403569e-61 | -8.615850e-47 |
| Msa0595850 | Msa0635380 | 0.844759 | 6.194537e-59 | -8.615850e-47 |
| Msa0595850 | Msa0640380 | 0.824117 | 9.603422e-54 | -8.615850e-47 |
| Msa0595850 | Msa0670660 | 0.851729 | 7.340475e-61 | -8.615850e-47 |
| Msa0595850 | Msa0678820 | 0.837887 | 3.985521e-57 | -8.615850e-47 |
| Msa0595850 | Msa0756310 | 0.823453 | 1.373882e-53 | -8.615850e-47 |
| Msa0595850 | Msa0767080 | 0.801634 | 8.209582e-49 | -8.615850e-47 |
| Msa0595850 | Msa0835730 | 0.824758 | 6.786058e-54 | -8.615850e-47 |
| Msa0595850 | Msa0846810 | 0.810384 | 1.184037e-50 | -8.615850e-47 |
| Msa0595850 | Msa0944550 | 0.804604 | 1.994592e-49 | -8.615850e-47 |
| Msa0595850 | Msa0982270 | 0.809572 | 1.771272e-50 | -8.615850e-47 |
| Msa0595850 | Msa1034710 | 0.808336 | 3.256426e-50 | -8.615850e-47 |
| Msa0595850 | Msa1070850 | 0.807956 | 3.923440e-50 | -8.615850e-47 |
| Msa0595850 | Msa1074530 | 0.810924 | 9.049271e-51 | -8.615850e-47 |
| Msa0595850 | Msa1115020 | 0.808267 | 3.369061e-50 | -8.615850e-47 |
| Msa0595850 | Msa1118750 | 0.805271 | 1.447117e-49 | -8.615850e-47 |
| Msa0595850 | Msa1158670 | 0.818613 | 1.788936e-52 | -8.615850e-47 |
| Msa0595850 | Msa1217810 | 0.806616 | 7.542784e-50 | -8.615850e-47 |
| Msa0595850 | Msa1279210 | 0.811549 | 6.623699e-51 | -8.615850e-47 |
| Msa0595850 | Msa1307740 | 0.801540 | 8.578867e-49 | -8.615850e-47 |
| Msa0595850 | Msa1322190 | 0.805841 | 1.098495e-49 | -8.615850e-47 |
| Msa0595850 | Msa1370340 | 0.935103 | 1.435082e-96 | -8.615850e-47 |
| Msa0595850 | Msa1382160 | 0.810565 | 1.082060e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595850 | MtrunA17_Chr4g0015051 | 97.273 | 330 | 9 | 0 | 1 | 330 | 1 | 330 | 0.0 | 653 |
| Msa0595850 | MtrunA17_Chr4g0014971 | 88.182 | 330 | 39 | 0 | 1 | 330 | 1 | 330 | 0.0 | 595 |
| Msa0595850 | MtrunA17_Chr4g0014951 | 86.667 | 330 | 44 | 0 | 1 | 330 | 1 | 330 | 0.0 | 592 |
| Msa0595850 | MtrunA17_Chr4g0014931 | 87.273 | 330 | 42 | 0 | 1 | 330 | 1 | 330 | 0.0 | 584 |
| Msa0595850 | MtrunA17_Chr4g0015091 | 82.675 | 329 | 56 | 1 | 1 | 329 | 1 | 328 | 0.0 | 556 |
| Msa0595850 | MtrunA17_Chr4g0014691 | 80.303 | 330 | 64 | 1 | 1 | 330 | 1 | 329 | 0.0 | 541 |
| Msa0595850 | MtrunA17_Chr4g0014541 | 80.303 | 330 | 64 | 1 | 1 | 330 | 1 | 329 | 0.0 | 540 |
| Msa0595850 | MtrunA17_Chr7g0235021 | 67.477 | 329 | 106 | 1 | 1 | 329 | 1 | 328 | 4.47e-161 | 452 |
| Msa0595850 | MtrunA17_Chr4g0015001 | 86.900 | 229 | 30 | 0 | 101 | 329 | 2 | 230 | 1.06e-141 | 400 |
| Msa0595850 | MtrunA17_Chr8g0365421 | 35.673 | 342 | 168 | 11 | 6 | 330 | 76 | 382 | 3.37e-43 | 153 |
| Msa0595850 | MtrunA17_Chr8g0351271 | 32.738 | 336 | 185 | 10 | 4 | 328 | 2 | 307 | 5.31e-34 | 127 |
| Msa0595850 | MtrunA17_Chr8g0351481 | 32.738 | 336 | 185 | 10 | 4 | 328 | 2 | 307 | 1.11e-33 | 126 |
| Msa0595850 | MtrunA17_Chr6g0453201 | 33.433 | 335 | 184 | 9 | 7 | 330 | 12 | 318 | 6.52e-33 | 124 |
| Msa0595850 | MtrunA17_Chr7g0228011 | 34.203 | 345 | 182 | 13 | 1 | 330 | 1 | 315 | 2.88e-31 | 119 |
| Msa0595850 | MtrunA17_Chr6g0465501 | 31.953 | 338 | 185 | 10 | 7 | 330 | 20 | 326 | 1.73e-30 | 117 |
| Msa0595850 | MtrunA17_Chr6g0466321 | 31.953 | 338 | 185 | 10 | 7 | 330 | 20 | 326 | 5.30e-30 | 116 |
| Msa0595850 | MtrunA17_Chr2g0316731 | 29.446 | 343 | 212 | 9 | 7 | 329 | 27 | 359 | 8.79e-28 | 111 |
| Msa0595850 | MtrunA17_Chr6g0453191 | 31.613 | 310 | 175 | 7 | 7 | 307 | 12 | 293 | 4.23e-26 | 105 |
| Msa0595850 | MtrunA17_Chr2g0281281 | 27.744 | 328 | 208 | 11 | 16 | 328 | 10 | 323 | 2.29e-21 | 92.8 |
| Msa0595850 | MtrunA17_Chr2g0281301 | 27.864 | 323 | 204 | 11 | 21 | 328 | 28 | 336 | 9.52e-20 | 88.6 |
| Msa0595850 | MtrunA17_Chr4g0045061 | 30.211 | 331 | 189 | 13 | 24 | 328 | 306 | 620 | 3.10e-17 | 82.4 |
| Msa0595850 | MtrunA17_Chr4g0045041 | 30.793 | 328 | 191 | 13 | 24 | 328 | 306 | 620 | 3.98e-17 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595850 | AT4G13010.1 | 74.242 | 330 | 84 | 1 | 1 | 330 | 1 | 329 | 1.47e-176 | 492 |
| Msa0595850 | AT1G23740.1 | 35.294 | 340 | 176 | 11 | 4 | 330 | 76 | 384 | 1.04e-41 | 149 |
| Msa0595850 | AT3G15090.1 | 30.650 | 323 | 196 | 6 | 26 | 329 | 52 | 365 | 2.54e-29 | 115 |
| Msa0595850 | AT1G49670.1 | 31.737 | 334 | 186 | 16 | 19 | 328 | 301 | 616 | 1.55e-18 | 87.0 |
| Msa0595850 | AT1G49670.2 | 30.398 | 352 | 190 | 17 | 19 | 328 | 301 | 639 | 1.16e-15 | 78.2 |
| Msa0595850 | AT4G21580.1 | 27.019 | 322 | 210 | 13 | 21 | 329 | 15 | 324 | 2.36e-15 | 76.3 |
| Msa0595850 | AT4G21580.3 | 27.103 | 321 | 205 | 13 | 21 | 329 | 15 | 318 | 7.51e-15 | 74.7 |
| Msa0595850 | AT5G61510.1 | 25.460 | 326 | 220 | 8 | 16 | 330 | 93 | 406 | 2.68e-12 | 67.8 |
Find 89 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGTAGAAATGAATAATT+TGG | 0.166052 | 4_2:-25236086 | Msa0595850:three_prime_UTR |
| GATCCTAATTTGAGTGAAAA+AGG | 0.192233 | 4_2:-25236430 | Msa0595850:CDS |
| CGTGACGCCCTCACAGAAAT+TGG | 0.273115 | 4_2:-25236727 | Msa0595850:CDS |
| ATGTCCTGATTCTCTCTTGC+TGG | 0.278300 | 4_2:-25236028 | Msa0595850:three_prime_UTR |
| CACCAAGCAAACTGAGACTA+TGG | 0.285432 | 4_2:+25236157 | None:intergenic |
| AGTAAAACTTCATTAGTCTT+TGG | 0.288694 | 4_2:+25240813 | None:intergenic |
| GACTGAATCTTCCAATCAAC+TGG | 0.313131 | 4_2:+25240765 | None:intergenic |
| CACGTGGTTGTTCCCTAGTT+TGG | 0.319662 | 4_2:+25236615 | None:intergenic |
| CAACAAAACAAAGAAGATTC+TGG | 0.325597 | 4_2:-25241048 | Msa0595850:five_prime_UTR |
| AGATTCAGTCTGGTGCTCTA+AGG | 0.338199 | 4_2:-25240752 | Msa0595850:CDS |
| ATTTAATATCTTACAGCATA+TGG | 0.343251 | 4_2:+25236057 | None:intergenic |
| TAAACATTTCATTACCATAT+AGG | 0.351090 | 4_2:+25235912 | None:intergenic |
| TCCTATGGCGGAGGAGTCTC+TGG | 0.355413 | 4_2:-25240977 | Msa0595850:CDS |
| AATTAAAATGATATGTGGTT+TGG | 0.362078 | 4_2:+25241316 | None:intergenic |
| AGATTTGATTGTTGTCTGTT+TGG | 0.368593 | 4_2:+25241229 | None:intergenic |
| AAATGATATGTGGTTTGGTT+TGG | 0.369257 | 4_2:+25241321 | None:intergenic |
| CCTTCAGCAGCTGAGACTTC+AGG | 0.386418 | 4_2:+25236781 | None:intergenic |
| ATTATGTAGCTGATCCTATA+TGG | 0.395569 | 4_2:-25235926 | Msa0595850:three_prime_UTR |
| TGGCGAGCAGAAGAATGTTT+TGG | 0.398444 | 4_2:-25236683 | Msa0595850:CDS |
| ATTGGAGGAATTAAGCTTGA+TGG | 0.403108 | 4_2:-25236709 | Msa0595850:CDS |
| AGCTGAGACTTCAGGTGGTC+TGG | 0.404146 | 4_2:+25236789 | None:intergenic |
| CAAACCAGCAAGAGAGAATC+AGG | 0.410719 | 4_2:+25236024 | None:intergenic |
| AGTATTGATGGCCATGCTAC+TGG | 0.420478 | 4_2:-25236196 | Msa0595850:CDS |
| AGAGATTGGACCACAAGTTA+AGG | 0.426820 | 4_2:-25239604 | Msa0595850:CDS |
| TGAGCAAAGCTGAAGATGCT+TGG | 0.430166 | 4_2:-25236225 | Msa0595850:CDS |
| GGTGCGAGTTTACCTATTGC+CGG | 0.430821 | 4_2:-25236760 | Msa0595850:CDS |
| CTCTTCAGTGATGTTCCCTC+TGG | 0.430862 | 4_2:+25236517 | None:intergenic |
| ATTGACTTCGTTAAGAGCTT+AGG | 0.432964 | 4_2:-25236568 | Msa0595850:CDS |
| AGCCATAGTCTCAGTTTGCT+TGG | 0.434330 | 4_2:-25236159 | Msa0595850:exon |
| GCTGTTCAACTAGCCAAACT+AGG | 0.436887 | 4_2:-25236628 | Msa0595850:CDS |
| GAGCAAAGCTGAAGATGCTT+GGG | 0.448420 | 4_2:-25236224 | Msa0595850:CDS |
| CGGAGGAGTCTCTGGATTGA+AGG | 0.450051 | 4_2:-25240969 | Msa0595850:intron |
| AACTGTTAAGCGTGAAGGCT+TGG | 0.454174 | 4_2:-25236311 | Msa0595850:CDS |
| GCTTGGGCTAAGAGTATTGA+TGG | 0.455624 | 4_2:-25236208 | Msa0595850:CDS |
| CTAGCATCAACCCAGTTGAT+TGG | 0.458227 | 4_2:-25240776 | Msa0595850:CDS |
| CGAGCTGTGAGACCGGCAAT+AGG | 0.465576 | 4_2:+25236748 | None:intergenic |
| GCAGGAGAGGTAGTAGAGAT+TGG | 0.465867 | 4_2:-25239618 | Msa0595850:CDS |
| TTAGTCTTTGGAGTTGGTAC+AGG | 0.467397 | 4_2:+25240825 | None:intergenic |
| GGAATTAAGCTTGATGGGAC+TGG | 0.474637 | 4_2:-25236703 | Msa0595850:CDS |
| CGCTTAACAGTTACAACGAA+TGG | 0.475098 | 4_2:+25236322 | None:intergenic |
| GCATCTTCAGCTTTGCTCAA+AGG | 0.476004 | 4_2:+25236229 | None:intergenic |
| ATTCTGGAGAAAGTTAGATA+TGG | 0.484785 | 4_2:-25241032 | Msa0595850:exon |
| TTGGAGGAATTAAGCTTGAT+GGG | 0.490626 | 4_2:-25236708 | Msa0595850:CDS |
| ACTGCTGCTTCAGGTGGTGT+AGG | 0.492958 | 4_2:-25236658 | Msa0595850:CDS |
| GGCGTCACGAGCTGTGAGAC+CGG | 0.493743 | 4_2:+25236741 | None:intergenic |
| AAATAAATTAAAATGATATG+TGG | 0.495447 | 4_2:+25241311 | None:intergenic |
| TGTCTGTTTGGACCGATTTG+TGG | 0.497301 | 4_2:+25241241 | None:intergenic |
| ACATCACTGAAGAGTCCATC+TGG | 0.503456 | 4_2:-25236508 | Msa0595850:CDS |
| GCAGTAATACATTGCACCAC+TGG | 0.505627 | 4_2:-25236472 | Msa0595850:CDS |
| GCTCTTCAGTACAGTTCCTA+TGG | 0.513825 | 4_2:-25240992 | Msa0595850:CDS |
| ACTTCATTAGTCTTTGGAGT+TGG | 0.526413 | 4_2:+25240819 | None:intergenic |
| GATTCAGGCACTGATGTAGC+AGG | 0.527374 | 4_2:-25239636 | Msa0595850:intron |
| AATTCCTCCAATTTCTGTGA+GGG | 0.528728 | 4_2:+25236720 | None:intergenic |
| GCAAAAGTCAACATTGAACT+TGG | 0.529043 | 4_2:+25236382 | None:intergenic |
| GTTGATTGGAAGATTCAGTC+TGG | 0.533264 | 4_2:-25240762 | Msa0595850:CDS |
| GCCTTAAAATCCTTAACTTG+TGG | 0.533297 | 4_2:+25239594 | None:intergenic |
| GATTCAGTCTGGTGCTCTAA+GGG | 0.542295 | 4_2:-25240751 | Msa0595850:CDS |
| TTGGTAACTGCTGCTTCAGG+TGG | 0.558002 | 4_2:-25236664 | Msa0595850:CDS |
| CTCGCTCAACTAGTGAAGGA+TGG | 0.564162 | 4_2:-25236283 | Msa0595850:CDS |
| GTTGTAACTGTTAAGCGTGA+AGG | 0.566623 | 4_2:-25236316 | Msa0595850:CDS |
| CTGTTCAACTAGCCAAACTA+GGG | 0.569207 | 4_2:-25236627 | Msa0595850:CDS |
| TCCAGAGACTCCTCCGCCAT+AGG | 0.573666 | 4_2:+25240976 | None:intergenic |
| CAGTACAGTTCCTATGGCGG+AGG | 0.575427 | 4_2:-25240986 | Msa0595850:CDS |
| CCTGAAGTCTCAGCTGCTGA+AGG | 0.576984 | 4_2:-25236781 | Msa0595850:CDS |
| TGTTAAGCTCTCGCTAGCTA+CGG | 0.584473 | 4_2:+25236816 | None:intergenic |
| TAGATATCAATGATTTCATG+AGG | 0.586975 | 4_2:-25235952 | Msa0595850:three_prime_UTR |
| ACATCTCGCTCAACTAGTGA+AGG | 0.592170 | 4_2:-25236287 | Msa0595850:CDS |
| AGGCACTGATGTAGCAGGAG+AGG | 0.593122 | 4_2:-25239631 | Msa0595850:CDS |
| GTCAACATTGAACTTGGACC+AGG | 0.603546 | 4_2:+25236388 | None:intergenic |
| TGTGAATGACAGTATGGAGG+TGG | 0.613929 | 4_2:-25236853 | Msa0595850:intron |
| GACGCCCTCACAGAAATTGG+AGG | 0.616536 | 4_2:-25236724 | Msa0595850:CDS |
| TAAGAGCTTAGGTGCTGACG+AGG | 0.617355 | 4_2:-25236557 | Msa0595850:CDS |
| GTTGTCGTGGATTTAACACC+TGG | 0.621056 | 4_2:-25236406 | Msa0595850:CDS |
| AATGTTACGAGCACCACAAG+TGG | 0.621983 | 4_2:+25236588 | None:intergenic |
| CACCACAAGTGGCTGTCACG+TGG | 0.628418 | 4_2:+25236599 | None:intergenic |
| TGTTTGGACCGATTTGTGGA+AGG | 0.633199 | 4_2:+25241245 | None:intergenic |
| TGTGTCATACAAGGTATGTG+AGG | 0.642683 | 4_2:+25240705 | None:intergenic |
| AACCACGTGACAGCCACTTG+TGG | 0.652023 | 4_2:-25236601 | Msa0595850:CDS |
| TAATTCCTCCAATTTCTGTG+AGG | 0.652507 | 4_2:+25236719 | None:intergenic |
| AATCACTCATCAAACAAGAG+AGG | 0.654020 | 4_2:+25235975 | None:intergenic |
| CTTGACTACAAAACTCCAGA+GGG | 0.654718 | 4_2:-25236532 | Msa0595850:CDS |
| TCAGCAGCTGAGACTTCAGG+TGG | 0.657763 | 4_2:+25236784 | None:intergenic |
| CTTCAGTACAGTTCCTATGG+CGG | 0.668012 | 4_2:-25240989 | Msa0595850:CDS |
| ACTGAATCTTCCAATCAACT+GGG | 0.677961 | 4_2:+25240766 | None:intergenic |
| TCTTGACTACAAAACTCCAG+AGG | 0.691725 | 4_2:-25236533 | Msa0595850:CDS |
| AGTTGACCACGGTATTCCAG+TGG | 0.695051 | 4_2:+25236456 | None:intergenic |
| TTATGTGAATGACAGTATGG+AGG | 0.706543 | 4_2:-25236856 | Msa0595850:intron |
| TTAGGATCAAAAGTTGACCA+CGG | 0.710883 | 4_2:+25236445 | None:intergenic |
| ATTGCACCACTGGAATACCG+TGG | 0.745198 | 4_2:-25236462 | Msa0595850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTAAAATGATATG+TGG | + | chr4_2:25235911-25235930 | None:intergenic | 10.0% |
| !! | ATATGAAATAAAAAAAAAGT+TGG | + | chr4_2:25240300-25240319 | None:intergenic | 10.0% |
| !! | ATATGCATTTATATATTAAT+TGG | - | chr4_2:25240316-25240335 | Msa0595850:intron | 10.0% |
| !! | CAATCAAAGAAAAAAAATAT+AGG | + | chr4_2:25237418-25237437 | None:intergenic | 15.0% |
| !!! | ATTATAAATATAGGTTGAAA+GGG | + | chr4_2:25238514-25238533 | None:intergenic | 15.0% |
| !!! | AATTATAAATATAGGTTGAA+AGG | + | chr4_2:25238515-25238534 | None:intergenic | 15.0% |
| !! | ATAGAAATTGAAATATTGTT+TGG | + | chr4_2:25239110-25239129 | None:intergenic | 15.0% |
| !! | AAATAAAAAAAAAGTTGGAT+TGG | + | chr4_2:25240295-25240314 | None:intergenic | 15.0% |
| !! | AATTAAAATGATATGTGGTT+TGG | + | chr4_2:25235906-25235925 | None:intergenic | 20.0% |
| !! | ATCTGATTCAATTCAATTAT+TGG | - | chr4_2:25236348-25236367 | Msa0595850:CDS | 20.0% |
| !!! | TAATGAAGTTTTACTCAAAT+TGG | - | chr4_2:25236414-25236433 | Msa0595850:CDS | 20.0% |
| !! | TTGCAATATCAATAAAATGA+GGG | + | chr4_2:25237899-25237918 | None:intergenic | 20.0% |
| !! | TTTGCAATATCAATAAAATG+AGG | + | chr4_2:25237900-25237919 | None:intergenic | 20.0% |
| !!! | AACAATATTTTGATATGTGA+TGG | + | chr4_2:25237928-25237947 | None:intergenic | 20.0% |
| !! | TTTGTAATAAAATTGCATGA+TGG | + | chr4_2:25238233-25238252 | None:intergenic | 20.0% |
| !! | GTATAATAATTATTAGTCAC+AGG | + | chr4_2:25238290-25238309 | None:intergenic | 20.0% |
| !!! | GAATTTTAAACTCAAACAAA+TGG | + | chr4_2:25238406-25238425 | None:intergenic | 20.0% |
| !! | GTAGTCTGAATTATAAATAT+AGG | + | chr4_2:25238523-25238542 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATAAATAGGAA+TGG | + | chr4_2:25238810-25238829 | None:intergenic | 20.0% |
| !!! | ACTCATTTTTGCTTATAAAT+AGG | + | chr4_2:25238815-25238834 | None:intergenic | 20.0% |
| !! | AACCAAAATAAATTCTTCTT+TGG | - | chr4_2:25239022-25239041 | Msa0595850:intron | 20.0% |
| !! | TTTCATATCTCCATAATTTA+GGG | + | chr4_2:25239363-25239382 | None:intergenic | 20.0% |
| !!! | TTTTCATATCTCCATAATTT+AGG | + | chr4_2:25239364-25239383 | None:intergenic | 20.0% |
| !! | TTTAAAAACTCGTTTATTTC+TGG | + | chr4_2:25239411-25239430 | None:intergenic | 20.0% |
| !!! | AATTCTAGCTTTTATCAATT+TGG | - | chr4_2:25239436-25239455 | Msa0595850:intron | 20.0% |
| !!! | TATAGATAGATTACTACTTT+TGG | - | chr4_2:25239666-25239685 | Msa0595850:intron | 20.0% |
| !!! | TTTTAAGAATTAGATGGAAA+TGG | - | chr4_2:25239839-25239858 | Msa0595850:intron | 20.0% |
| !! | ATTACTGTGTAATTAATAGA+AGG | + | chr4_2:25240010-25240029 | None:intergenic | 20.0% |
| !! | AATTAACAGTATAAATCATG+TGG | + | chr4_2:25240160-25240179 | None:intergenic | 20.0% |
| !! | TCATTCACATAATACAAAAT+TGG | + | chr4_2:25240355-25240374 | None:intergenic | 20.0% |
| !! | TCATGTAGAAATGAATAATT+TGG | - | chr4_2:25241133-25241152 | Msa0595850:five_prime_UTR | 20.0% |
| !! | ATTTAATATCTTACAGCATA+TGG | + | chr4_2:25241165-25241184 | None:intergenic | 20.0% |
| !! | TAAACATTTCATTACCATAT+AGG | + | chr4_2:25241310-25241329 | None:intergenic | 20.0% |
| !!! | TTTTATTTCCTTCCACAAAT+CGG | - | chr4_2:25235966-25235985 | Msa0595850:three_prime_UTR | 25.0% |
| !!! | TTTTGAAAGAGATGAGAAAT+GGG | + | chr4_2:25236292-25236311 | None:intergenic | 25.0% |
| !!! | AGTAAAACTTCATTAGTCTT+TGG | + | chr4_2:25236409-25236428 | None:intergenic | 25.0% |
| ! | AAACAACTTAAGATATGTTG+TGG | - | chr4_2:25236611-25236630 | Msa0595850:CDS | 25.0% |
| ! | ACATCCAATAATATTTGGTT+TGG | + | chr4_2:25236796-25236815 | None:intergenic | 25.0% |
| ! | CAGAAACATCCAATAATATT+TGG | + | chr4_2:25236801-25236820 | None:intergenic | 25.0% |
| ! | CAAATATTATTGGATGTTTC+TGG | - | chr4_2:25236799-25236818 | Msa0595850:CDS | 25.0% |
| !!! | TTCATTTTTCAAAACCGAAT+TGG | - | chr4_2:25236860-25236879 | Msa0595850:intron | 25.0% |
| ! | TAAAAATAACTCAGAGATAG+GGG | + | chr4_2:25236901-25236920 | None:intergenic | 25.0% |
| ! | CTAAAAATAACTCAGAGATA+GGG | + | chr4_2:25236902-25236921 | None:intergenic | 25.0% |
| ! | ACTAAAAATAACTCAGAGAT+AGG | + | chr4_2:25236903-25236922 | None:intergenic | 25.0% |
| ! | AATTAAGATTCCTTTGATCT+TGG | - | chr4_2:25237554-25237573 | Msa0595850:intron | 25.0% |
| ! | ATTAAGATTCCTTTGATCTT+GGG | - | chr4_2:25237555-25237574 | Msa0595850:intron | 25.0% |
| ! | ACTTGAATTAACACAGATAA+TGG | + | chr4_2:25237725-25237744 | None:intergenic | 25.0% |
| !! | GATTTAGTTTCTTTACATAC+TGG | + | chr4_2:25238138-25238157 | None:intergenic | 25.0% |
| ! | TAAATCACTAATCTATAGCT+TGG | - | chr4_2:25238152-25238171 | Msa0595850:intron | 25.0% |
| !! | CATGCAATTTTATTACAAAC+CGG | - | chr4_2:25238234-25238253 | Msa0595850:intron | 25.0% |
| ! | AATTATTAGTCACAGGAATA+AGG | + | chr4_2:25238283-25238302 | None:intergenic | 25.0% |
| !! | TTTAAAATTCCTTTAGCAAG+AGG | - | chr4_2:25238416-25238435 | Msa0595850:intron | 25.0% |
| ! | TAAGCAGTTTATTAGTAATG+TGG | + | chr4_2:25238758-25238777 | None:intergenic | 25.0% |
| ! | GATGTATTTGGTTAAAAATG+TGG | + | chr4_2:25238861-25238880 | None:intergenic | 25.0% |
| !!! | TCAAAGAAAGTTGATGTATT+TGG | + | chr4_2:25238873-25238892 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTGTAGATAGGAA+CGG | - | chr4_2:25238897-25238916 | Msa0595850:intron | 25.0% |
| ! | TATCACTAGAAATAGAATCT+AGG | - | chr4_2:25238976-25238995 | Msa0595850:intron | 25.0% |
| ! | ATCACTAGAAATAGAATCTA+GGG | - | chr4_2:25238977-25238996 | Msa0595850:intron | 25.0% |
| !! | GACCAAAGAAGAATTTATTT+TGG | + | chr4_2:25239027-25239046 | None:intergenic | 25.0% |
| ! | AAGATGATTGCATTTCAATT+TGG | + | chr4_2:25239069-25239088 | None:intergenic | 25.0% |
| ! | AAATTGAAATGCAATCATCT+TGG | - | chr4_2:25239068-25239087 | Msa0595850:intron | 25.0% |
| !! | TGTTTCTCCAACAAATTTTT+GGG | - | chr4_2:25239169-25239188 | Msa0595850:intron | 25.0% |
| ! | GGAGATATGAAAATTTCTTA+AGG | - | chr4_2:25239371-25239390 | Msa0595850:intron | 25.0% |
| ! | CACTTAACACATGAAATTAA+CGG | - | chr4_2:25239546-25239565 | Msa0595850:intron | 25.0% |
| !!! | TGACAATATTTTGATAAGTC+AGG | - | chr4_2:25239580-25239599 | Msa0595850:CDS | 25.0% |
| !!! | GACAATATTTTGATAAGTCA+GGG | - | chr4_2:25239581-25239600 | Msa0595850:CDS | 25.0% |
| ! | TTATCTATAAGTACCCAATT+TGG | + | chr4_2:25239639-25239658 | None:intergenic | 25.0% |
| !! | TTGTTGATTGATTTACCAAT+TGG | + | chr4_2:25239692-25239711 | None:intergenic | 25.0% |
| !!! | CTAAGGTTTTAAGAATTAGA+TGG | - | chr4_2:25239833-25239852 | Msa0595850:intron | 25.0% |
| ! | TAATCAAATCATACCTTTCT+AGG | + | chr4_2:25239898-25239917 | None:intergenic | 25.0% |
| ! | TGTGTAATTAATAGAAGGTA+AGG | + | chr4_2:25240005-25240024 | None:intergenic | 25.0% |
| ! | AATAACCTTCTCTTTAGTAA+AGG | - | chr4_2:25240085-25240104 | Msa0595850:intron | 25.0% |
| ! | ATCCTAATTTGAGTGAAAAA+GGG | - | chr4_2:25240790-25240809 | Msa0595850:CDS | 25.0% |
| ! | TAGATATCAATGATTTCATG+AGG | - | chr4_2:25241267-25241286 | Msa0595850:five_prime_UTR | 25.0% |
| !! | AAATGATATGTGGTTTGGTT+TGG | + | chr4_2:25235901-25235920 | None:intergenic | 30.0% |
| AGATTTGATTGTTGTCTGTT+TGG | + | chr4_2:25235993-25236012 | None:intergenic | 30.0% | |
| CAACAAAACAAAGAAGATTC+TGG | - | chr4_2:25236171-25236190 | Msa0595850:exon | 30.0% | |
| ! | ATTCTGGAGAAAGTTAGATA+TGG | - | chr4_2:25236187-25236206 | Msa0595850:CDS | 30.0% |
| !! | CTTTTGAAAGAGATGAGAAA+TGG | + | chr4_2:25236293-25236312 | None:intergenic | 30.0% |
| AGCAAAAGTAAAAAAGAAGG+TGG | + | chr4_2:25236545-25236564 | None:intergenic | 30.0% | |
| AACTTAAGATATGTTGTGGT+TGG | - | chr4_2:25236615-25236634 | Msa0595850:CDS | 30.0% | |
| CTAAACTAGTACATCCAAAT+TGG | + | chr4_2:25236703-25236722 | None:intergenic | 30.0% | |
| ! | TGTACTAGTTTAGTTTCTTC+AGG | - | chr4_2:25236710-25236729 | Msa0595850:CDS | 30.0% |
| CGTTCCAAACCAAATATTAT+TGG | - | chr4_2:25236789-25236808 | Msa0595850:CDS | 30.0% | |
| !! | TTTTTCAAAACCGAATTGGT+CGG | - | chr4_2:25236864-25236883 | Msa0595850:intron | 30.0% |
| TGTGATACTAAGTTTCTGTT+TGG | - | chr4_2:25237054-25237073 | Msa0595850:intron | 30.0% | |
| GTGATACTAAGTTTCTGTTT+GGG | - | chr4_2:25237055-25237074 | Msa0595850:intron | 30.0% | |
| TTTGGATGTAGTGTTTATGA+GGG | + | chr4_2:25237257-25237276 | None:intergenic | 30.0% | |
| TGTCATAAGCTATTCCTTTA+GGG | + | chr4_2:25237284-25237303 | None:intergenic | 30.0% | |
| ATGTCATAAGCTATTCCTTT+AGG | + | chr4_2:25237285-25237304 | None:intergenic | 30.0% | |
| GCTTATGACATATCTAAGAA+TGG | - | chr4_2:25237294-25237313 | Msa0595850:intron | 30.0% | |
| ! | ACCACAAGTTAAGGATTTTA+AGG | - | chr4_2:25237624-25237643 | Msa0595850:intron | 30.0% |
| TAATGGAAAACAGTAACCTA+CGG | + | chr4_2:25237708-25237727 | None:intergenic | 30.0% | |
| TAATAACACATACCCTTTCA+CGG | - | chr4_2:25237804-25237823 | Msa0595850:intron | 30.0% | |
| GATTAAATCGATAAAACGCT+AGG | - | chr4_2:25238049-25238068 | Msa0595850:intron | 30.0% | |
| AGACAACTGGAAATAGATAT+TGG | + | chr4_2:25238092-25238111 | None:intergenic | 30.0% | |
| CAAATACTGTAATACTACGA+TGG | + | chr4_2:25238201-25238220 | None:intergenic | 30.0% | |
| AATAAAGTTTACTGCCATGA+TGG | - | chr4_2:25238257-25238276 | Msa0595850:intron | 30.0% | |
| AAAAGATAAACTCAAAACCG+TGG | - | chr4_2:25238336-25238355 | Msa0595850:intron | 30.0% | |
| TTCAACAGGTATAATAACCA+CGG | + | chr4_2:25238356-25238375 | None:intergenic | 30.0% | |
| AATGGTAAAACCATGGTAAA+TGG | + | chr4_2:25238388-25238407 | None:intergenic | 30.0% | |
| TCAAACAAATGGTAAAACCA+TGG | + | chr4_2:25238395-25238414 | None:intergenic | 30.0% | |
| TACTTTAATCCTCTTGCTAA+AGG | + | chr4_2:25238428-25238447 | None:intergenic | 30.0% | |
| GCAGTCTGAATTATAAATAC+AGG | + | chr4_2:25238467-25238486 | None:intergenic | 30.0% | |
| ! | ATATAGGTTGAAAGGGAAAA+GGG | + | chr4_2:25238507-25238526 | None:intergenic | 30.0% |
| ! | AATATAGGTTGAAAGGGAAA+AGG | + | chr4_2:25238508-25238527 | None:intergenic | 30.0% |
| AAGCAAAAATGAGTCAAAGA+AGG | - | chr4_2:25238821-25238840 | Msa0595850:intron | 30.0% | |
| !!! | ACTCGTTTTTTCTTGTAGAT+AGG | - | chr4_2:25238892-25238911 | Msa0595850:intron | 30.0% |
| !! | GTGCTTAAGCTTTAAAATCT+AGG | + | chr4_2:25239144-25239163 | None:intergenic | 30.0% |
| !! | AAAATTTGTTGGAGAAACAC+AGG | + | chr4_2:25239168-25239187 | None:intergenic | 30.0% |
| ! | GTGTTTCTCCAACAAATTTT+TGG | - | chr4_2:25239168-25239187 | Msa0595850:intron | 30.0% |
| CGTTAATTTCATGTGTTAAG+TGG | + | chr4_2:25239548-25239567 | None:intergenic | 30.0% | |
| TTAACACATGAAATTAACGG+AGG | - | chr4_2:25239549-25239568 | Msa0595850:intron | 30.0% | |
| TAACACATGAAATTAACGGA+GGG | - | chr4_2:25239550-25239569 | Msa0595850:intron | 30.0% | |
| TGGTAAATCAATCAACAACA+TGG | - | chr4_2:25239694-25239713 | Msa0595850:intron | 30.0% | |
| ATGTTAGACAGACAACAAAT+TGG | + | chr4_2:25239763-25239782 | None:intergenic | 30.0% | |
| AAATCATACCTTTCTAGGTA+AGG | + | chr4_2:25239893-25239912 | None:intergenic | 30.0% | |
| TTAATAGAAGGTAAGGTTAG+AGG | + | chr4_2:25239998-25240017 | None:intergenic | 30.0% | |
| ATACACCTTTACTAAAGAGA+AGG | + | chr4_2:25240093-25240112 | None:intergenic | 30.0% | |
| ! | AAAAAAGTTGGATTGGAGAT+AGG | + | chr4_2:25240288-25240307 | None:intergenic | 30.0% |
| GTATTATGTGAATGACAGTA+TGG | - | chr4_2:25240360-25240379 | Msa0595850:intron | 30.0% | |
| GATCCTAATTTGAGTGAAAA+AGG | - | chr4_2:25240789-25240808 | Msa0595850:CDS | 30.0% | |
| TCCTAATTTGAGTGAAAAAG+GGG | - | chr4_2:25240791-25240810 | Msa0595850:CDS | 30.0% | |
| ATTATGTAGCTGATCCTATA+TGG | - | chr4_2:25241293-25241312 | Msa0595850:five_prime_UTR | 30.0% | |
| !! | ACTTCATTAGTCTTTGGAGT+TGG | + | chr4_2:25236403-25236422 | None:intergenic | 35.0% |
| ACTGAATCTTCCAATCAACT+GGG | + | chr4_2:25236456-25236475 | None:intergenic | 35.0% | |
| GGCAGCAAAAGTAAAAAAGA+AGG | + | chr4_2:25236548-25236567 | None:intergenic | 35.0% | |
| CGACAAGTGATTATGCTTAT+AGG | + | chr4_2:25236569-25236588 | None:intergenic | 35.0% | |
| TTAAGATATGTTGTGGTTGG+TGG | - | chr4_2:25236618-25236637 | Msa0595850:CDS | 35.0% | |
| TAGTACATCCAAATTGGCAT+CGG | + | chr4_2:25236697-25236716 | None:intergenic | 35.0% | |
| TAGTGAAAAACCACATGAAC+TGG | - | chr4_2:25236830-25236849 | Msa0595850:CDS | 35.0% | |
| ATACTAAGTTTCTGTTTGGG+AGG | - | chr4_2:25237058-25237077 | Msa0595850:intron | 35.0% | |
| TACTAAGTTTCTGTTTGGGA+GGG | - | chr4_2:25237059-25237078 | Msa0595850:intron | 35.0% | |
| GTTTGGATGTAGTGTTTATG+AGG | + | chr4_2:25237258-25237277 | None:intergenic | 35.0% | |
| TACATCCAAACATACCCTAA+AGG | - | chr4_2:25237267-25237286 | Msa0595850:intron | 35.0% | |
| !! | CTATTCCTTTAGGGTATGTT+TGG | + | chr4_2:25237275-25237294 | None:intergenic | 35.0% |
| TATTGCAAGTAGAAGTGAGT+AGG | + | chr4_2:25237533-25237552 | None:intergenic | 35.0% | |
| ! | GCCTTAAAATCCTTAACTTG+TGG | + | chr4_2:25237628-25237647 | None:intergenic | 35.0% |
| !!! | CAAGTTAAGGATTTTAAGGC+TGG | - | chr4_2:25237628-25237647 | Msa0595850:intron | 35.0% |
| ! | GTTAGTTTCAGTCGGTTAAA+TGG | - | chr4_2:25237963-25237982 | Msa0595850:intron | 35.0% |
| TGTCACGTTAAGTGATATTC+TGG | - | chr4_2:25237991-25238010 | Msa0595850:intron | 35.0% | |
| TAGTACACGTAAGCAAAAGT+CGG | - | chr4_2:25238025-25238044 | Msa0595850:intron | 35.0% | |
| TAAAAGAGGAAGAAGACAAC+TGG | + | chr4_2:25238105-25238124 | None:intergenic | 35.0% | |
| ATACTACGATGGTACATTTC+TGG | + | chr4_2:25238190-25238209 | None:intergenic | 35.0% | |
| CATGGCAGTAAACTTTATTC+CGG | + | chr4_2:25238256-25238275 | None:intergenic | 35.0% | |
| ! | TCTTTTACCCACAAATGAGT+TGG | + | chr4_2:25238322-25238341 | None:intergenic | 35.0% |
| GGTTATTATACCTGTTGAAC+AGG | - | chr4_2:25238357-25238376 | Msa0595850:intron | 35.0% | |
| AATGGAGTATATCCATACCA+TGG | + | chr4_2:25238792-25238811 | None:intergenic | 35.0% | |
| CTGTTAGCATAGACATTGTA+TGG | + | chr4_2:25238948-25238967 | None:intergenic | 35.0% | |
| CAATGTCTATGCTAACAGAA+CGG | - | chr4_2:25238950-25238969 | Msa0595850:intron | 35.0% | |
| TAAGTGGCCCAAAAATTTGT+TGG | + | chr4_2:25239179-25239198 | None:intergenic | 35.0% | |
| !! | AAATTTTTGGGCCACTTATC+AGG | - | chr4_2:25239181-25239200 | Msa0595850:intron | 35.0% |
| AATCTGCTTATCCTGATAAG+TGG | + | chr4_2:25239195-25239214 | None:intergenic | 35.0% | |
| TTAAAAGACAGACTTGACTC+AGG | - | chr4_2:25239268-25239287 | Msa0595850:intron | 35.0% | |
| GTACACGTAAGAAAAAGTCA+GGG | + | chr4_2:25239463-25239482 | None:intergenic | 35.0% | |
| AGTACACGTAAGAAAAAGTC+AGG | + | chr4_2:25239464-25239483 | None:intergenic | 35.0% | |
| !! | GATTACTACTTTTGGCCAAT+TGG | - | chr4_2:25239674-25239693 | Msa0595850:intron | 35.0% |
| AATCAATCAACAACATGGAG+TGG | - | chr4_2:25239699-25239718 | Msa0595850:intron | 35.0% | |
| AGACAACAAATTGGAATGGT+TGG | + | chr4_2:25239754-25239773 | None:intergenic | 35.0% | |
| AGACAGACAACAAATTGGAA+TGG | + | chr4_2:25239758-25239777 | None:intergenic | 35.0% | |
| AGGTAAGGCTAATCAAAACA+AGG | + | chr4_2:25239878-25239897 | None:intergenic | 35.0% | |
| !! | TTGATTAGCCTTACCTAGAA+AGG | - | chr4_2:25239882-25239901 | Msa0595850:intron | 35.0% |
| ACAAACTACATCTCCAAACA+AGG | + | chr4_2:25239930-25239949 | None:intergenic | 35.0% | |
| TTATGTGAATGACAGTATGG+AGG | - | chr4_2:25240363-25240382 | Msa0595850:intron | 35.0% | |
| AATTCCTCCAATTTCTGTGA+GGG | + | chr4_2:25240502-25240521 | None:intergenic | 35.0% | |
| TAATTCCTCCAATTTCTGTG+AGG | + | chr4_2:25240503-25240522 | None:intergenic | 35.0% | |
| ATTGGAGGAATTAAGCTTGA+TGG | - | chr4_2:25240510-25240529 | Msa0595850:intron | 35.0% | |
| TTGGAGGAATTAAGCTTGAT+GGG | - | chr4_2:25240511-25240530 | Msa0595850:intron | 35.0% | |
| ! | ATTGACTTCGTTAAGAGCTT+AGG | - | chr4_2:25240651-25240670 | Msa0595850:intron | 35.0% |
| !!! | GCATCGTATTTTTTACCAGA+TGG | + | chr4_2:25240729-25240748 | None:intergenic | 35.0% |
| TTAGGATCAAAAGTTGACCA+CGG | + | chr4_2:25240777-25240796 | None:intergenic | 35.0% | |
| !! | ACCCCTTTTTCACTCAAATT+AGG | + | chr4_2:25240795-25240814 | None:intergenic | 35.0% |
| GCAAAAGTCAACATTGAACT+TGG | + | chr4_2:25240840-25240859 | None:intergenic | 35.0% | |
| !!! | TACTTTTTCGAAGAAGCGTT+TGG | - | chr4_2:25240872-25240891 | Msa0595850:intron | 35.0% |
| ! | CAATGATTTTTCCAGTAGCA+TGG | + | chr4_2:25241037-25241056 | None:intergenic | 35.0% |
| AATCACTCATCAAACAAGAG+AGG | + | chr4_2:25241247-25241266 | None:intergenic | 35.0% | |
| !! | TTAGTCTTTGGAGTTGGTAC+AGG | + | chr4_2:25236397-25236416 | None:intergenic | 40.0% |
| GACTGAATCTTCCAATCAAC+TGG | + | chr4_2:25236457-25236476 | None:intergenic | 40.0% | |
| GTTGATTGGAAGATTCAGTC+TGG | - | chr4_2:25236457-25236476 | Msa0595850:CDS | 40.0% | |
| ! | GGTATGTGAGGAAATTTTCG+AGG | + | chr4_2:25236505-25236524 | None:intergenic | 40.0% |
| TGTGTCATACAAGGTATGTG+AGG | + | chr4_2:25236517-25236536 | None:intergenic | 40.0% | |
| AGTACATCCAAATTGGCATC+GGG | + | chr4_2:25236696-25236715 | None:intergenic | 40.0% | |
| AAACCACATGAACTGGATTC+AGG | - | chr4_2:25236837-25236856 | Msa0595850:CDS | 40.0% | |
| ACTAAGTTTCTGTTTGGGAG+GGG | - | chr4_2:25237060-25237079 | Msa0595850:intron | 40.0% | |
| TGTAGTGTTTATGAGGGCAA+GGG | + | chr4_2:25237251-25237270 | None:intergenic | 40.0% | |
| ATGTAGTGTTTATGAGGGCA+AGG | + | chr4_2:25237252-25237271 | None:intergenic | 40.0% | |
| ATTCCTTTGATCTTGGGACT+TGG | - | chr4_2:25237561-25237580 | Msa0595850:intron | 40.0% | |
| AATCCAAGTCCCAAGATCAA+AGG | + | chr4_2:25237567-25237586 | None:intergenic | 40.0% | |
| AGAGATTGGACCACAAGTTA+AGG | - | chr4_2:25237615-25237634 | Msa0595850:intron | 40.0% | |
| TCTCTTTCTTTCACTTCCGT+AGG | - | chr4_2:25237689-25237708 | Msa0595850:intron | 40.0% | |
| ! | GTCCTTCTGTTAGTTTCAGT+CGG | - | chr4_2:25237955-25237974 | Msa0595850:intron | 40.0% |
| AACCGACTGAAACTAACAGA+AGG | + | chr4_2:25237960-25237979 | None:intergenic | 40.0% | |
| AGTACACGTAAGCAAAAGTC+GGG | - | chr4_2:25238026-25238045 | Msa0595850:intron | 40.0% | |
| CTGGTTTCAGCGAATAAAAG+AGG | + | chr4_2:25238119-25238138 | None:intergenic | 40.0% | |
| CTTACCACCAACTCATTTGT+GGG | - | chr4_2:25238312-25238331 | Msa0595850:intron | 40.0% | |
| ! | TTTACCCACAAATGAGTTGG+TGG | + | chr4_2:25238319-25238338 | None:intergenic | 40.0% |
| CTACCTACAGCAATTACAAG+CGG | - | chr4_2:25238539-25238558 | Msa0595850:intron | 40.0% | |
| TAACCGCTTGTAATTGCTGT+AGG | + | chr4_2:25238545-25238564 | None:intergenic | 40.0% | |
| GAGAGAGAATGAGTCAAAGA+AGG | - | chr4_2:25238718-25238737 | Msa0595850:intron | 40.0% | |
| TTTCTTGTAGATAGGAACGG+AGG | - | chr4_2:25238900-25238919 | Msa0595850:intron | 40.0% | |
| TTCTTGTAGATAGGAACGGA+GGG | - | chr4_2:25238901-25238920 | Msa0595850:intron | 40.0% | |
| ! | ACCATGGGAGTGTAAAGAAT+GGG | + | chr4_2:25239340-25239359 | None:intergenic | 40.0% |
| CTCCATAATTTAGGGACCAT+GGG | + | chr4_2:25239355-25239374 | None:intergenic | 40.0% | |
| TCTCCATAATTTAGGGACCA+TGG | + | chr4_2:25239356-25239375 | None:intergenic | 40.0% | |
| ! | TCTGATTTGAGCGACCAAAT+TGG | - | chr4_2:25239622-25239641 | Msa0595850:CDS | 40.0% |
| ! | CTGATTTGAGCGACCAAATT+GGG | - | chr4_2:25239623-25239642 | Msa0595850:CDS | 40.0% |
| ATGTCTGGTAGGGTCAAATA+AGG | + | chr4_2:25239786-25239805 | None:intergenic | 40.0% | |
| TTATTTGACCCTACCAGACA+TGG | - | chr4_2:25239785-25239804 | Msa0595850:intron | 40.0% | |
| TATTTGACCCTACCAGACAT+GGG | - | chr4_2:25239786-25239805 | Msa0595850:intron | 40.0% | |
| ATTAACCTTCCCTCCTTGTT+TGG | - | chr4_2:25239914-25239933 | Msa0595850:intron | 40.0% | |
| ACTACATCTCCAAACAAGGA+GGG | + | chr4_2:25239926-25239945 | None:intergenic | 40.0% | |
| AACTACATCTCCAAACAAGG+AGG | + | chr4_2:25239927-25239946 | None:intergenic | 40.0% | |
| ATATCTCGTGATCAATCACG+TGG | + | chr4_2:25239962-25239981 | None:intergenic | 40.0% | |
| TGAACTTTCACAACCATGAG+GGG | + | chr4_2:25240045-25240064 | None:intergenic | 40.0% | |
| CTGAACTTTCACAACCATGA+GGG | + | chr4_2:25240046-25240065 | None:intergenic | 40.0% | |
| TCTGAACTTTCACAACCATG+AGG | + | chr4_2:25240047-25240066 | None:intergenic | 40.0% | |
| GTGCATATGTACCACATGTT+GGG | + | chr4_2:25240222-25240241 | None:intergenic | 40.0% | |
| AACATGTGGTACATATGCAC+CGG | - | chr4_2:25240222-25240241 | Msa0595850:intron | 40.0% | |
| ! | ATATGCACCGGTAACATTGA+AGG | - | chr4_2:25240234-25240253 | Msa0595850:intron | 40.0% |
| TGGGAAACCTTCAATGTTAC+CGG | + | chr4_2:25240244-25240263 | None:intergenic | 40.0% | |
| !! | CAGTCATAGAGTAGTGGATT+GGG | + | chr4_2:25240263-25240282 | None:intergenic | 40.0% |
| !! | TCAGTCATAGAGTAGTGGAT+TGG | + | chr4_2:25240264-25240283 | None:intergenic | 40.0% |
| TAGGATCAGTCATAGAGTAG+TGG | + | chr4_2:25240269-25240288 | None:intergenic | 40.0% | |
| CTGTTCAACTAGCCAAACTA+GGG | - | chr4_2:25240592-25240611 | Msa0595850:intron | 40.0% | |
| TCTTGACTACAAAACTCCAG+AGG | - | chr4_2:25240686-25240705 | Msa0595850:intron | 40.0% | |
| CTTGACTACAAAACTCCAGA+GGG | - | chr4_2:25240687-25240706 | Msa0595850:intron | 40.0% | |
| CGCTTAACAGTTACAACGAA+TGG | + | chr4_2:25240900-25240919 | None:intergenic | 40.0% | |
| GTTGTAACTGTTAAGCGTGA+AGG | - | chr4_2:25240903-25240922 | Msa0595850:intron | 40.0% | |
| !! | TGTTTGGACCGATTTGTGGA+AGG | + | chr4_2:25235977-25235996 | None:intergenic | 45.0% |
| !! | TGTCTGTTTGGACCGATTTG+TGG | + | chr4_2:25235981-25236000 | None:intergenic | 45.0% |
| GCTCTTCAGTACAGTTCCTA+TGG | - | chr4_2:25236227-25236246 | Msa0595850:CDS | 45.0% | |
| CTTCAGTACAGTTCCTATGG+CGG | - | chr4_2:25236230-25236249 | Msa0595850:CDS | 45.0% | |
| CTAGCATCAACCCAGTTGAT+TGG | - | chr4_2:25236443-25236462 | Msa0595850:CDS | 45.0% | |
| AGATTCAGTCTGGTGCTCTA+AGG | - | chr4_2:25236467-25236486 | Msa0595850:CDS | 45.0% | |
| GATTCAGTCTGGTGCTCTAA+GGG | - | chr4_2:25236468-25236487 | Msa0595850:CDS | 45.0% | |
| GTGGATCAGTGTGTCATACA+AGG | + | chr4_2:25236526-25236545 | None:intergenic | 45.0% | |
| ! | TCCAAATTGGCATCGGGAAA+CGG | + | chr4_2:25236690-25236709 | None:intergenic | 45.0% |
| GAACCTGAATCCAGTTCATG+TGG | + | chr4_2:25236843-25236862 | None:intergenic | 45.0% | |
| ! | ATGAGATTGGCCGACCAATT+CGG | + | chr4_2:25236877-25236896 | None:intergenic | 45.0% |
| CTAAGTTTCTGTTTGGGAGG+GGG | - | chr4_2:25237061-25237080 | Msa0595850:intron | 45.0% | |
| TAAGTTTCTGTTTGGGAGGG+GGG | - | chr4_2:25237062-25237081 | Msa0595850:intron | 45.0% | |
| TGATCTTGGGACTTGGATTC+AGG | - | chr4_2:25237568-25237587 | Msa0595850:intron | 45.0% | |
| GTACACGTAAGCAAAAGTCG+GGG | - | chr4_2:25238027-25238046 | Msa0595850:intron | 45.0% | |
| TCACAGGAATAAGGCCATCA+TGG | + | chr4_2:25238274-25238293 | None:intergenic | 45.0% | |
| GCTTACCACCAACTCATTTG+TGG | - | chr4_2:25238311-25238330 | Msa0595850:intron | 45.0% | |
| AATGGTGAGACCTGTTCAAC+AGG | + | chr4_2:25238370-25238389 | None:intergenic | 45.0% | |
| ACAGGTCTCACCATTTACCA+TGG | - | chr4_2:25238375-25238394 | Msa0595850:intron | 45.0% | |
| AGGTTGAAAGGGAAAAGGGA+GGG | + | chr4_2:25238503-25238522 | None:intergenic | 45.0% | |
| ! | TAGGTTGAAAGGGAAAAGGG+AGG | + | chr4_2:25238504-25238523 | None:intergenic | 45.0% |
| TGCTTATCATAGACCAGCCA+TGG | - | chr4_2:25238772-25238791 | Msa0595850:intron | 45.0% | |
| ATCATAGACCAGCCATGGTA+TGG | - | chr4_2:25238777-25238796 | Msa0595850:intron | 45.0% | |
| GAGTATATCCATACCATGGC+TGG | + | chr4_2:25238788-25238807 | None:intergenic | 45.0% | |
| ! | TTTGGTCCATTTTGCGCATC+TGG | - | chr4_2:25239040-25239059 | Msa0595850:intron | 45.0% |
| ! | TTGGTCCATTTTGCGCATCT+GGG | - | chr4_2:25239041-25239060 | Msa0595850:intron | 45.0% |
| ! | ATGGGAGTGTAAAGAATGGG+TGG | + | chr4_2:25239337-25239356 | None:intergenic | 45.0% |
| ACCCATTCTTTACACTCCCA+TGG | - | chr4_2:25239336-25239355 | Msa0595850:intron | 45.0% | |
| ! | GACCATGGGAGTGTAAAGAA+TGG | + | chr4_2:25239341-25239360 | None:intergenic | 45.0% |
| CTCCCATGGTCCCTAAATTA+TGG | - | chr4_2:25239350-25239369 | Msa0595850:intron | 45.0% | |
| ATTTGACCCTACCAGACATG+GGG | - | chr4_2:25239787-25239806 | Msa0595850:intron | 45.0% | |
| TTGTATCCCCATGTCTGGTA+GGG | + | chr4_2:25239796-25239815 | None:intergenic | 45.0% | |
| TATGCTTGTATCCCCATGTC+TGG | + | chr4_2:25239801-25239820 | None:intergenic | 45.0% | |
| GCATACACAGTGGTTGTCTA+AGG | - | chr4_2:25239816-25239835 | Msa0595850:intron | 45.0% | |
| TACTTCTTCATTGCCCCTCA+TGG | - | chr4_2:25240029-25240048 | Msa0595850:intron | 45.0% | |
| ATGCTCTTTGTCCCAACATG+TGG | - | chr4_2:25240208-25240227 | Msa0595850:intron | 45.0% | |
| GGTGCATATGTACCACATGT+TGG | + | chr4_2:25240223-25240242 | None:intergenic | 45.0% | |
| TGTGAATGACAGTATGGAGG+TGG | - | chr4_2:25240366-25240385 | Msa0595850:intron | 45.0% | |
| TGTTAAGCTCTCGCTAGCTA+CGG | + | chr4_2:25240406-25240425 | None:intergenic | 45.0% | |
| GGAATTAAGCTTGATGGGAC+TGG | - | chr4_2:25240516-25240535 | Msa0595850:intron | 45.0% | |
| ! | TGGCGAGCAGAAGAATGTTT+TGG | - | chr4_2:25240536-25240555 | Msa0595850:intron | 45.0% |
| !! | GTTTTGGTAACTGCTGCTTC+AGG | - | chr4_2:25240552-25240571 | Msa0595850:intron | 45.0% |
| GCTGTTCAACTAGCCAAACT+AGG | - | chr4_2:25240591-25240610 | Msa0595850:intron | 45.0% | |
| AATGTTACGAGCACCACAAG+TGG | + | chr4_2:25240634-25240653 | None:intergenic | 45.0% | |
| ACATCACTGAAGAGTCCATC+TGG | - | chr4_2:25240711-25240730 | Msa0595850:intron | 45.0% | |
| GCAGTAATACATTGCACCAC+TGG | - | chr4_2:25240747-25240766 | Msa0595850:CDS | 45.0% | |
| GTTGTCGTGGATTTAACACC+TGG | - | chr4_2:25240813-25240832 | Msa0595850:CDS | 45.0% | |
| GTCAACATTGAACTTGGACC+AGG | + | chr4_2:25240834-25240853 | None:intergenic | 45.0% | |
| AACTGTTAAGCGTGAAGGCT+TGG | - | chr4_2:25240908-25240927 | Msa0595850:intron | 45.0% | |
| ACATCTCGCTCAACTAGTGA+AGG | - | chr4_2:25240932-25240951 | Msa0595850:intron | 45.0% | |
| GCATCTTCAGCTTTGCTCAA+AGG | + | chr4_2:25240993-25241012 | None:intergenic | 45.0% | |
| TGAGCAAAGCTGAAGATGCT+TGG | - | chr4_2:25240994-25241013 | Msa0595850:CDS | 45.0% | |
| GAGCAAAGCTGAAGATGCTT+GGG | - | chr4_2:25240995-25241014 | Msa0595850:CDS | 45.0% | |
| !! | GCTTGGGCTAAGAGTATTGA+TGG | - | chr4_2:25241011-25241030 | Msa0595850:CDS | 45.0% |
| !! | AGTATTGATGGCCATGCTAC+TGG | - | chr4_2:25241023-25241042 | Msa0595850:exon | 45.0% |
| ! | AGCCATAGTCTCAGTTTGCT+TGG | - | chr4_2:25241060-25241079 | Msa0595850:five_prime_UTR | 45.0% |
| CACCAAGCAAACTGAGACTA+TGG | + | chr4_2:25241065-25241084 | None:intergenic | 45.0% | |
| ATGTCCTGATTCTCTCTTGC+TGG | - | chr4_2:25241191-25241210 | Msa0595850:five_prime_UTR | 45.0% | |
| CAAACCAGCAAGAGAGAATC+AGG | + | chr4_2:25241198-25241217 | None:intergenic | 45.0% | |
| !! | TTATTATTATTAAATATTGT+GGG | + | chr4_2:25238571-25238590 | None:intergenic | 5.0% |
| !! | ATTATTATTATTAAATATTG+TGG | + | chr4_2:25238572-25238591 | None:intergenic | 5.0% |
| ! | TTGAGAAGGAGCACACTCGA+AGG | + | chr4_2:25236647-25236666 | None:intergenic | 50.0% |
| TTCGAGTGTGCTCCTTCTCA+AGG | - | chr4_2:25236646-25236665 | Msa0595850:CDS | 50.0% | |
| TCGAACCTGAGACCTTGAGA+AGG | + | chr4_2:25236661-25236680 | None:intergenic | 50.0% | |
| ! | CCAAATTGGCATCGGGAAAC+GGG | + | chr4_2:25236689-25236708 | None:intergenic | 50.0% |
| ! | CAGAGATAGGGGCATGAGAT+TGG | + | chr4_2:25236890-25236909 | None:intergenic | 50.0% |
| TGTTTATGAGGGCAAGGGAG+GGG | + | chr4_2:25237246-25237265 | None:intergenic | 50.0% | |
| GTGTTTATGAGGGCAAGGGA+GGG | + | chr4_2:25237247-25237266 | None:intergenic | 50.0% | |
| AGTGTTTATGAGGGCAAGGG+AGG | + | chr4_2:25237248-25237267 | None:intergenic | 50.0% | |
| !! | GATTCAGGCACTGATGTAGC+AGG | - | chr4_2:25237583-25237602 | Msa0595850:intron | 50.0% |
| GCAGGAGAGGTAGTAGAGAT+TGG | - | chr4_2:25237601-25237620 | Msa0595850:intron | 50.0% | |
| ! | TGCACATGAGCACCGTGAAA+GGG | + | chr4_2:25237819-25237838 | None:intergenic | 50.0% |
| ! | TTGCACATGAGCACCGTGAA+AGG | + | chr4_2:25237820-25237839 | None:intergenic | 50.0% |
| ! | AAAGGGAAAAGGGAGGGCAT+TGG | + | chr4_2:25238497-25238516 | None:intergenic | 50.0% |
| TGGTTCCCAGATGCGCAAAA+TGG | + | chr4_2:25239049-25239068 | None:intergenic | 50.0% | |
| GGAGTGTAAAGAATGGGTGG+TGG | + | chr4_2:25239334-25239353 | None:intergenic | 50.0% | |
| AACAACATGGAGTGGAGCTG+TGG | - | chr4_2:25239707-25239726 | Msa0595850:intron | 50.0% | |
| CTTGTATCCCCATGTCTGGT+AGG | + | chr4_2:25239797-25239816 | None:intergenic | 50.0% | |
| GGGGATACAAGCATACACAG+TGG | - | chr4_2:25239806-25239825 | Msa0595850:intron | 50.0% | |
| CATCTCCAAACAAGGAGGGA+AGG | + | chr4_2:25239922-25239941 | None:intergenic | 50.0% | |
| GTAAGGTTAGAGGCAGAGGA+AGG | + | chr4_2:25239988-25240007 | None:intergenic | 50.0% | |
| GAAGGTAAGGTTAGAGGCAG+AGG | + | chr4_2:25239992-25240011 | None:intergenic | 50.0% | |
| GGTGCGAGTTTACCTATTGC+CGG | - | chr4_2:25240459-25240478 | Msa0595850:intron | 50.0% | |
| ! | TTGGTAACTGCTGCTTCAGG+TGG | - | chr4_2:25240555-25240574 | Msa0595850:intron | 50.0% |
| CACGTGGTTGTTCCCTAGTT+TGG | + | chr4_2:25240607-25240626 | None:intergenic | 50.0% | |
| !! | TAAGAGCTTAGGTGCTGACG+AGG | - | chr4_2:25240662-25240681 | Msa0595850:intron | 50.0% |
| CTCTTCAGTGATGTTCCCTC+TGG | + | chr4_2:25240705-25240724 | None:intergenic | 50.0% | |
| ATTGCACCACTGGAATACCG+TGG | - | chr4_2:25240757-25240776 | Msa0595850:CDS | 50.0% | |
| AGTTGACCACGGTATTCCAG+TGG | + | chr4_2:25240766-25240785 | None:intergenic | 50.0% | |
| GAGTGAAAAAGGGGTTGTCG+TGG | - | chr4_2:25240800-25240819 | Msa0595850:CDS | 50.0% | |
| CTCGCTCAACTAGTGAAGGA+TGG | - | chr4_2:25240936-25240955 | Msa0595850:intron | 50.0% | |
| CAGTACAGTTCCTATGGCGG+AGG | - | chr4_2:25236233-25236252 | Msa0595850:CDS | 55.0% | |
| CGGAGGAGTCTCTGGATTGA+AGG | - | chr4_2:25236250-25236269 | Msa0595850:CDS | 55.0% | |
| GTGCTCCTTCTCAAGGTCTC+AGG | - | chr4_2:25236653-25236672 | Msa0595850:CDS | 55.0% | |
| CCCGTTTCCCGATGCCAATT+TGG | - | chr4_2:25236686-25236705 | Msa0595850:CDS | 55.0% | |
| ! | TCTGTTTGGGAGGGGGGTTT+TGG | - | chr4_2:25237068-25237087 | Msa0595850:intron | 55.0% |
| !!! | TTTGGGAGGGGGGTTTTGGA+GGG | - | chr4_2:25237072-25237091 | Msa0595850:intron | 55.0% |
| !! | AGGCACTGATGTAGCAGGAG+AGG | - | chr4_2:25237588-25237607 | Msa0595850:intron | 55.0% |
| AACATGGAGTGGAGCTGTGG+AGG | - | chr4_2:25239710-25239729 | Msa0595850:intron | 55.0% | |
| AGCTGAGACTTCAGGTGGTC+TGG | + | chr4_2:25240433-25240452 | None:intergenic | 55.0% | |
| TCAGCAGCTGAGACTTCAGG+TGG | + | chr4_2:25240438-25240457 | None:intergenic | 55.0% | |
| CCTTCAGCAGCTGAGACTTC+AGG | + | chr4_2:25240441-25240460 | None:intergenic | 55.0% | |
| CCTGAAGTCTCAGCTGCTGA+AGG | - | chr4_2:25240438-25240457 | Msa0595850:intron | 55.0% | |
| CGTGACGCCCTCACAGAAAT+TGG | - | chr4_2:25240492-25240511 | Msa0595850:intron | 55.0% | |
| GACGCCCTCACAGAAATTGG+AGG | - | chr4_2:25240495-25240514 | Msa0595850:intron | 55.0% | |
| ! | ACTGCTGCTTCAGGTGGTGT+AGG | - | chr4_2:25240561-25240580 | Msa0595850:intron | 55.0% |
| AACCACGTGACAGCCACTTG+TGG | - | chr4_2:25240618-25240637 | Msa0595850:intron | 55.0% | |
| ! | TCCTATGGCGGAGGAGTCTC+TGG | - | chr4_2:25236242-25236261 | Msa0595850:CDS | 60.0% |
| TCCAGAGACTCCTCCGCCAT+AGG | + | chr4_2:25236246-25236265 | None:intergenic | 60.0% | |
| !! | GTTTGGGAGGGGGGTTTTGG+AGG | - | chr4_2:25237071-25237090 | Msa0595850:intron | 60.0% |
| TATGAGGGCAAGGGAGGGGA+GGG | + | chr4_2:25237242-25237261 | None:intergenic | 60.0% | |
| TTATGAGGGCAAGGGAGGGG+AGG | + | chr4_2:25237243-25237262 | None:intergenic | 60.0% | |
| CGAGCTGTGAGACCGGCAAT+AGG | + | chr4_2:25240474-25240493 | None:intergenic | 60.0% | |
| CACCACAAGTGGCTGTCACG+TGG | + | chr4_2:25240623-25240642 | None:intergenic | 60.0% | |
| GGCGTCACGAGCTGTGAGAC+CGG | + | chr4_2:25240481-25240500 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 25235898 | 25241343 | 25235898 | ID=Msa0595850;Name=Msa0595850 |
| chr4_2 | mRNA | 25235898 | 25241343 | 25235898 | ID=Msa0595850-mRNA-1;Parent=Msa0595850;Name=Msa0595850-mRNA-1;_AED=0.21;_eAED=0.21;_QI=308|1|1|1|1|1|4|276|330 |
| chr4_2 | exon | 25235898 | 25236863 | 25235898 | ID=Msa0595850-mRNA-1:exon:6794;Parent=Msa0595850-mRNA-1 |
| chr4_2 | exon | 25239560 | 25239651 | 25239560 | ID=Msa0595850-mRNA-1:exon:6793;Parent=Msa0595850-mRNA-1 |
| chr4_2 | exon | 25240715 | 25240859 | 25240715 | ID=Msa0595850-mRNA-1:exon:6792;Parent=Msa0595850-mRNA-1 |
| chr4_2 | exon | 25240970 | 25241343 | 25240970 | ID=Msa0595850-mRNA-1:exon:6791;Parent=Msa0595850-mRNA-1 |
| chr4_2 | five_prime_UTR | 25241036 | 25241343 | 25241036 | ID=Msa0595850-mRNA-1:five_prime_utr;Parent=Msa0595850-mRNA-1 |
| chr4_2 | CDS | 25240970 | 25241035 | 25240970 | ID=Msa0595850-mRNA-1:cds;Parent=Msa0595850-mRNA-1 |
| chr4_2 | CDS | 25240715 | 25240859 | 25240715 | ID=Msa0595850-mRNA-1:cds;Parent=Msa0595850-mRNA-1 |
| chr4_2 | CDS | 25239560 | 25239651 | 25239560 | ID=Msa0595850-mRNA-1:cds;Parent=Msa0595850-mRNA-1 |
| chr4_2 | CDS | 25236174 | 25236863 | 25236174 | ID=Msa0595850-mRNA-1:cds;Parent=Msa0595850-mRNA-1 |
| chr4_2 | three_prime_UTR | 25235898 | 25236173 | 25235898 | ID=Msa0595850-mRNA-1:three_prime_utr;Parent=Msa0595850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
