AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1370340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1370340 MtrunA17_Chr4g0015051 95.775 71 3 0 1 71 1 71 3.63e-45 147
Msa1370340 MtrunA17_Chr4g0014951 81.690 71 13 0 1 71 1 71 9.50e-40 132
Msa1370340 MtrunA17_Chr4g0014971 80.282 71 14 0 1 71 1 71 3.05e-39 131
Msa1370340 MtrunA17_Chr4g0015091 83.099 71 11 1 1 71 1 70 1.69e-35 122
Msa1370340 MtrunA17_Chr4g0014931 76.056 71 17 0 1 71 1 71 3.85e-34 118
Msa1370340 MtrunA17_Chr4g0014691 73.239 71 18 1 1 71 1 70 7.14e-31 110
Msa1370340 MtrunA17_Chr4g0014541 73.239 71 18 1 1 71 1 70 1.71e-30 108
Msa1370340 MtrunA17_Chr7g0235021 64.789 71 24 1 1 71 1 70 3.54e-27 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1370340 AT4G13010.1 76.056 71 16 1 1 71 1 70 1.53e-32 114

Find 98 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGTAGAAATGAATAATT+TGG 0.166052 tig0019115:+186162 Msa1370340:three_prime_UTR
GATCCTAATTTGAGTGAAAA+AGG 0.192233 tig0019115:+185818 Msa1370340:three_prime_UTR
CGACAAGTGATTATGCTTAT+AGG 0.261560 tig0019115:-181611 None:intergenic
CGTGACGCCCTCACAGAAAT+TGG 0.273115 tig0019115:+185521 Msa1370340:three_prime_UTR
ATGTCCTGATTCTCTCTTGC+TGG 0.278300 tig0019115:+186220 Msa1370340:three_prime_UTR
CACCAAGCAAACTGAGACTA+TGG 0.285432 tig0019115:-186091 None:intergenic
AGTAAAACTTCATTAGTCTT+TGG 0.288694 tig0019115:-181451 None:intergenic
GACTGAATCTTCCAATCAAC+TGG 0.313131 tig0019115:-181499 None:intergenic
CACGTGGTTGTTCCCTAGTT+TGG 0.319662 tig0019115:-185633 None:intergenic
CAACAAAACAAAGAAGATTC+TGG 0.325597 tig0019115:+181216 Msa1370340:five_prime_UTR
AGATTCAGTCTGGTGCTCTA+AGG 0.338199 tig0019115:+181512 Msa1370340:CDS
ATTTAATATCTTACAGCATA+TGG 0.343251 tig0019115:-186191 None:intergenic
TAAACATTTCATTACCATAT+AGG 0.351090 tig0019115:-186336 None:intergenic
TCCTATGGCGGAGGAGTCTC+TGG 0.355413 tig0019115:+181287 Msa1370340:CDS
AATTAAAATGATATGTGGTT+TGG 0.362078 tig0019115:-180948 None:intergenic
AGATTTGATTGTTGTCTGTT+TGG 0.368593 tig0019115:-181035 None:intergenic
AAATGATATGTGGTTTGGTT+TGG 0.369257 tig0019115:-180943 None:intergenic
CCTTCAGCAGCTGAGACTTC+AGG 0.386418 tig0019115:-185467 None:intergenic
ATTATGTAGCTGATCCTATA+TGG 0.395569 tig0019115:+186322 Msa1370340:three_prime_UTR
TGGCGAGCAGAAGAATGTTT+TGG 0.398444 tig0019115:+185565 Msa1370340:three_prime_UTR
ATTGGAGGAATTAAGCTTGA+TGG 0.403108 tig0019115:+185539 Msa1370340:three_prime_UTR
AGCTGAGACTTCAGGTGGTC+TGG 0.404146 tig0019115:-185459 None:intergenic
CAAACCAGCAAGAGAGAATC+AGG 0.410719 tig0019115:-186224 None:intergenic
AGTATTGATGGCCATGCTAC+TGG 0.420478 tig0019115:+186052 Msa1370340:three_prime_UTR
AGAGATTGGACCACAAGTTA+AGG 0.426820 tig0019115:+182660 Msa1370340:three_prime_UTR
TGAGCAAAGCTGAAGATGCT+TGG 0.430166 tig0019115:+186023 Msa1370340:three_prime_UTR
GGTGCGAGTTTACCTATTGC+CGG 0.430821 tig0019115:+185488 Msa1370340:three_prime_UTR
CTCTTCAGTGATGTTCCCTC+TGG 0.430862 tig0019115:-185731 None:intergenic
ATTGACTTCGTTAAGAGCTT+AGG 0.432964 tig0019115:+185680 Msa1370340:three_prime_UTR
AGCCATAGTCTCAGTTTGCT+TGG 0.434330 tig0019115:+186089 Msa1370340:three_prime_UTR
GCTGTTCAACTAGCCAAACT+AGG 0.436887 tig0019115:+185620 Msa1370340:three_prime_UTR
GAGCAAAGCTGAAGATGCTT+GGG 0.448420 tig0019115:+186024 Msa1370340:three_prime_UTR
CGGAGGAGTCTCTGGATTGA+AGG 0.450051 tig0019115:+181295 Msa1370340:CDS
GTGCTCCTTCTCAAGGTCTC+AGG 0.452460 tig0019115:+181698 Msa1370340:three_prime_UTR
AACTGTTAAGCGTGAAGGCT+TGG 0.454174 tig0019115:+185937 Msa1370340:three_prime_UTR
GCTTGGGCTAAGAGTATTGA+TGG 0.455624 tig0019115:+186040 Msa1370340:three_prime_UTR
CTAGCATCAACCCAGTTGAT+TGG 0.458227 tig0019115:+181488 Msa1370340:CDS
CGAGCTGTGAGACCGGCAAT+AGG 0.465576 tig0019115:-185500 None:intergenic
GCAGGAGAGGTAGTAGAGAT+TGG 0.465867 tig0019115:+182646 Msa1370340:three_prime_UTR
TTAGTCTTTGGAGTTGGTAC+AGG 0.467397 tig0019115:-181439 None:intergenic
GGAATTAAGCTTGATGGGAC+TGG 0.474637 tig0019115:+185545 Msa1370340:three_prime_UTR
CGCTTAACAGTTACAACGAA+TGG 0.475098 tig0019115:-185926 None:intergenic
GCATCTTCAGCTTTGCTCAA+AGG 0.476004 tig0019115:-186019 None:intergenic
ATTCTGGAGAAAGTTAGATA+TGG 0.484785 tig0019115:+181232 Msa1370340:exon
TTGGAGGAATTAAGCTTGAT+GGG 0.490626 tig0019115:+185540 Msa1370340:three_prime_UTR
ACTGCTGCTTCAGGTGGTGT+AGG 0.492958 tig0019115:+185590 Msa1370340:three_prime_UTR
GGCGTCACGAGCTGTGAGAC+CGG 0.493743 tig0019115:-185507 None:intergenic
AAATAAATTAAAATGATATG+TGG 0.495447 tig0019115:-180953 None:intergenic
TGTCTGTTTGGACCGATTTG+TGG 0.497301 tig0019115:-181023 None:intergenic
ACATCACTGAAGAGTCCATC+TGG 0.503456 tig0019115:+185740 Msa1370340:three_prime_UTR
GCAGTAATACATTGCACCAC+TGG 0.505627 tig0019115:+185776 Msa1370340:three_prime_UTR
TTCGAGTGTGCTCCTTCTCA+AGG 0.507817 tig0019115:+181691 Msa1370340:three_prime_UTR
GCTCTTCAGTACAGTTCCTA+TGG 0.513825 tig0019115:+181272 Msa1370340:CDS
ACTTCATTAGTCTTTGGAGT+TGG 0.526413 tig0019115:-181445 None:intergenic
GATTCAGGCACTGATGTAGC+AGG 0.527374 tig0019115:+182628 Msa1370340:intron
AATTCCTCCAATTTCTGTGA+GGG 0.528728 tig0019115:-185528 None:intergenic
GCAAAAGTCAACATTGAACT+TGG 0.529043 tig0019115:-185866 None:intergenic
GTTGATTGGAAGATTCAGTC+TGG 0.533264 tig0019115:+181502 Msa1370340:CDS
GCCTTAAAATCCTTAACTTG+TGG 0.533297 tig0019115:-182670 None:intergenic
TTAAGATATGTTGTGGTTGG+TGG 0.534538 tig0019115:+181663 Msa1370340:three_prime_UTR
GATTCAGTCTGGTGCTCTAA+GGG 0.542295 tig0019115:+181513 Msa1370340:CDS
TTGGTAACTGCTGCTTCAGG+TGG 0.558002 tig0019115:+185584 Msa1370340:three_prime_UTR
AACTTAAGATATGTTGTGGT+TGG 0.562183 tig0019115:+181660 Msa1370340:three_prime_UTR
CTCGCTCAACTAGTGAAGGA+TGG 0.564162 tig0019115:+185965 Msa1370340:three_prime_UTR
AAACAACTTAAGATATGTTG+TGG 0.564539 tig0019115:+181656 Msa1370340:three_prime_UTR
GTTGTAACTGTTAAGCGTGA+AGG 0.566623 tig0019115:+185932 Msa1370340:three_prime_UTR
CTGTTCAACTAGCCAAACTA+GGG 0.569207 tig0019115:+185621 Msa1370340:three_prime_UTR
TCCAGAGACTCCTCCGCCAT+AGG 0.573666 tig0019115:-181288 None:intergenic
CAGTACAGTTCCTATGGCGG+AGG 0.575427 tig0019115:+181278 Msa1370340:CDS
CCTGAAGTCTCAGCTGCTGA+AGG 0.576984 tig0019115:+185467 Msa1370340:three_prime_UTR
GTGGATCAGTGTGTCATACA+AGG 0.581686 tig0019115:-181568 None:intergenic
TGTTAAGCTCTCGCTAGCTA+CGG 0.584473 tig0019115:-185432 None:intergenic
TAGATATCAATGATTTCATG+AGG 0.586975 tig0019115:+186296 Msa1370340:three_prime_UTR
ACATCTCGCTCAACTAGTGA+AGG 0.592170 tig0019115:+185961 Msa1370340:three_prime_UTR
AGGCACTGATGTAGCAGGAG+AGG 0.593122 tig0019115:+182633 Msa1370340:intron
GTCAACATTGAACTTGGACC+AGG 0.603546 tig0019115:-185860 None:intergenic
TGTGAATGACAGTATGGAGG+TGG 0.613929 tig0019115:+185395 Msa1370340:intron
GACGCCCTCACAGAAATTGG+AGG 0.616536 tig0019115:+185524 Msa1370340:three_prime_UTR
TAAGAGCTTAGGTGCTGACG+AGG 0.617355 tig0019115:+185691 Msa1370340:three_prime_UTR
GTTGTCGTGGATTTAACACC+TGG 0.621056 tig0019115:+185842 Msa1370340:three_prime_UTR
AATGTTACGAGCACCACAAG+TGG 0.621983 tig0019115:-185660 None:intergenic
CACCACAAGTGGCTGTCACG+TGG 0.628418 tig0019115:-185649 None:intergenic
TGTTTGGACCGATTTGTGGA+AGG 0.633199 tig0019115:-181019 None:intergenic
TGTGTCATACAAGGTATGTG+AGG 0.642683 tig0019115:-181559 None:intergenic
AACCACGTGACAGCCACTTG+TGG 0.652023 tig0019115:+185647 Msa1370340:three_prime_UTR
TAATTCCTCCAATTTCTGTG+AGG 0.652507 tig0019115:-185529 None:intergenic
AATCACTCATCAAACAAGAG+AGG 0.654020 tig0019115:-186273 None:intergenic
TCGAACCTGAGACCTTGAGA+AGG 0.654615 tig0019115:-181703 None:intergenic
CTTGACTACAAAACTCCAGA+GGG 0.654718 tig0019115:+185716 Msa1370340:three_prime_UTR
TCAGCAGCTGAGACTTCAGG+TGG 0.657763 tig0019115:-185464 None:intergenic
CTTCAGTACAGTTCCTATGG+CGG 0.668012 tig0019115:+181275 Msa1370340:CDS
TTGAGAAGGAGCACACTCGA+AGG 0.674336 tig0019115:-181689 None:intergenic
ACTGAATCTTCCAATCAACT+GGG 0.677961 tig0019115:-181498 None:intergenic
TCTTGACTACAAAACTCCAG+AGG 0.691725 tig0019115:+185715 Msa1370340:three_prime_UTR
AGTTGACCACGGTATTCCAG+TGG 0.695051 tig0019115:-185792 None:intergenic
TTATGTGAATGACAGTATGG+AGG 0.706543 tig0019115:+185392 Msa1370340:intron
TTAGGATCAAAAGTTGACCA+CGG 0.710883 tig0019115:-185803 None:intergenic
ATTGCACCACTGGAATACCG+TGG 0.745198 tig0019115:+185786 Msa1370340:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATTAAAATGATATG+TGG - tig0019115:180956-180975 None:intergenic 10.0%
!! ATATGAAATAAAAAAAAAGT+TGG - tig0019115:185329-185348 None:intergenic 10.0%
!! ATATGCATTTATATATTAAT+TGG + tig0019115:185345-185364 Msa1370340:intron 10.0%
!! CAATCAAAGAAAAAAAATAT+AGG - tig0019115:182463-182482 None:intergenic 15.0%
!!! ATTATAAATATAGGTTGAAA+GGG - tig0019115:183559-183578 None:intergenic 15.0%
!!! AATTATAAATATAGGTTGAA+AGG - tig0019115:183560-183579 None:intergenic 15.0%
!! ATAGAAATTGAAATATTGTT+TGG - tig0019115:184140-184159 None:intergenic 15.0%
!! AAATAAAAAAAAAGTTGGAT+TGG - tig0019115:185324-185343 None:intergenic 15.0%
!! AATTAAAATGATATGTGGTT+TGG - tig0019115:180951-180970 None:intergenic 20.0%
!! ATCTGATTCAATTCAATTAT+TGG + tig0019115:181393-181412 Msa1370340:intron 20.0%
!!! TAATGAAGTTTTACTCAAAT+TGG + tig0019115:181459-181478 Msa1370340:CDS 20.0%
!! TTGCAATATCAATAAAATGA+GGG - tig0019115:182944-182963 None:intergenic 20.0%
!! TTTGCAATATCAATAAAATG+AGG - tig0019115:182945-182964 None:intergenic 20.0%
!!! AACAATATTTTGATATGTGA+TGG - tig0019115:182973-182992 None:intergenic 20.0%
!! TTTGTAATAAAATTGCATGA+TGG - tig0019115:183278-183297 None:intergenic 20.0%
!! GTATAATAATTATTAGTCAC+AGG - tig0019115:183335-183354 None:intergenic 20.0%
!!! GAATTTTAAACTCAAACAAA+TGG - tig0019115:183451-183470 None:intergenic 20.0%
!! GTAGTCTGAATTATAAATAT+AGG - tig0019115:183568-183587 None:intergenic 20.0%
!!! TTTTTGCTTATAAATAGGAA+TGG - tig0019115:183840-183859 None:intergenic 20.0%
!!! ACTCATTTTTGCTTATAAAT+AGG - tig0019115:183845-183864 None:intergenic 20.0%
!! AACCAAAATAAATTCTTCTT+TGG + tig0019115:184052-184071 Msa1370340:intron 20.0%
!! TTTCATATCTCCATAATTTA+GGG - tig0019115:184393-184412 None:intergenic 20.0%
!!! TTTTCATATCTCCATAATTT+AGG - tig0019115:184394-184413 None:intergenic 20.0%
!! TTTAAAAACTCGTTTATTTC+TGG - tig0019115:184441-184460 None:intergenic 20.0%
!!! AATTCTAGCTTTTATCAATT+TGG + tig0019115:184466-184485 Msa1370340:intron 20.0%
!!! TATAGATAGATTACTACTTT+TGG + tig0019115:184695-184714 Msa1370340:intron 20.0%
!!! TTTTAAGAATTAGATGGAAA+TGG + tig0019115:184868-184887 Msa1370340:intron 20.0%
!! ATTACTGTGTAATTAATAGA+AGG - tig0019115:185039-185058 None:intergenic 20.0%
!! AATTAACAGTATAAATCATG+TGG - tig0019115:185189-185208 None:intergenic 20.0%
!! TCATTCACATAATACAAAAT+TGG - tig0019115:185384-185403 None:intergenic 20.0%
!! TCATGTAGAAATGAATAATT+TGG + tig0019115:186162-186181 Msa1370340:three_prime_UTR 20.0%
!! ATTTAATATCTTACAGCATA+TGG - tig0019115:186194-186213 None:intergenic 20.0%
!! TAAACATTTCATTACCATAT+AGG - tig0019115:186339-186358 None:intergenic 20.0%
!!! TTTTATTTCCTTCCACAAAT+CGG + tig0019115:181011-181030 Msa1370340:five_prime_UTR 25.0%
!!! TTTTGAAAGAGATGAGAAAT+GGG - tig0019115:181337-181356 None:intergenic 25.0%
!!! AGTAAAACTTCATTAGTCTT+TGG - tig0019115:181454-181473 None:intergenic 25.0%
! AAACAACTTAAGATATGTTG+TGG + tig0019115:181656-181675 Msa1370340:three_prime_UTR 25.0%
! ACATCCAATAATATTTGGTT+TGG - tig0019115:181841-181860 None:intergenic 25.0%
! CAGAAACATCCAATAATATT+TGG - tig0019115:181846-181865 None:intergenic 25.0%
! CAAATATTATTGGATGTTTC+TGG + tig0019115:181844-181863 Msa1370340:intron 25.0%
!!! TTCATTTTTCAAAACCGAAT+TGG + tig0019115:181905-181924 Msa1370340:intron 25.0%
! TAAAAATAACTCAGAGATAG+GGG - tig0019115:181946-181965 None:intergenic 25.0%
! CTAAAAATAACTCAGAGATA+GGG - tig0019115:181947-181966 None:intergenic 25.0%
! ACTAAAAATAACTCAGAGAT+AGG - tig0019115:181948-181967 None:intergenic 25.0%
! AATTAAGATTCCTTTGATCT+TGG + tig0019115:182599-182618 Msa1370340:intron 25.0%
! ATTAAGATTCCTTTGATCTT+GGG + tig0019115:182600-182619 Msa1370340:intron 25.0%
! ACTTGAATTAACACAGATAA+TGG - tig0019115:182770-182789 None:intergenic 25.0%
!! GATTTAGTTTCTTTACATAC+TGG - tig0019115:183183-183202 None:intergenic 25.0%
! TAAATCACTAATCTATAGCT+TGG + tig0019115:183197-183216 Msa1370340:intron 25.0%
!! CATGCAATTTTATTACAAAC+CGG + tig0019115:183279-183298 Msa1370340:intron 25.0%
! AATTATTAGTCACAGGAATA+AGG - tig0019115:183328-183347 None:intergenic 25.0%
!! TTTAAAATTCCTTTAGCAAG+AGG + tig0019115:183461-183480 Msa1370340:intron 25.0%
! TAAGCAGTTTATTAGTAATG+TGG - tig0019115:183788-183807 None:intergenic 25.0%
! GATGTATTTGGTTAAAAATG+TGG - tig0019115:183891-183910 None:intergenic 25.0%
!!! TCAAAGAAAGTTGATGTATT+TGG - tig0019115:183903-183922 None:intergenic 25.0%
!!! TTTTTTCTTGTAGATAGGAA+CGG + tig0019115:183927-183946 Msa1370340:intron 25.0%
! TATCACTAGAAATAGAATCT+AGG + tig0019115:184006-184025 Msa1370340:intron 25.0%
! ATCACTAGAAATAGAATCTA+GGG + tig0019115:184007-184026 Msa1370340:intron 25.0%
!! GACCAAAGAAGAATTTATTT+TGG - tig0019115:184057-184076 None:intergenic 25.0%
! AAGATGATTGCATTTCAATT+TGG - tig0019115:184099-184118 None:intergenic 25.0%
! AAATTGAAATGCAATCATCT+TGG + tig0019115:184098-184117 Msa1370340:intron 25.0%
!! TGTTTCTCCAACAAATTTTT+GGG + tig0019115:184199-184218 Msa1370340:intron 25.0%
! GGAGATATGAAAATTTCTTA+AGG + tig0019115:184401-184420 Msa1370340:intron 25.0%
! CACTTAACACATGAAATTAA+CGG + tig0019115:184575-184594 Msa1370340:intron 25.0%
!!! TGACAATATTTTGATAAGTC+AGG + tig0019115:184609-184628 Msa1370340:intron 25.0%
!!! GACAATATTTTGATAAGTCA+GGG + tig0019115:184610-184629 Msa1370340:intron 25.0%
! TTATCTATAAGTACCCAATT+TGG - tig0019115:184668-184687 None:intergenic 25.0%
!! TTGTTGATTGATTTACCAAT+TGG - tig0019115:184721-184740 None:intergenic 25.0%
!!! CTAAGGTTTTAAGAATTAGA+TGG + tig0019115:184862-184881 Msa1370340:intron 25.0%
! TAATCAAATCATACCTTTCT+AGG - tig0019115:184927-184946 None:intergenic 25.0%
! TGTGTAATTAATAGAAGGTA+AGG - tig0019115:185034-185053 None:intergenic 25.0%
! AATAACCTTCTCTTTAGTAA+AGG + tig0019115:185114-185133 Msa1370340:intron 25.0%
! ATCCTAATTTGAGTGAAAAA+GGG + tig0019115:185819-185838 Msa1370340:three_prime_UTR 25.0%
! TAGATATCAATGATTTCATG+AGG + tig0019115:186296-186315 Msa1370340:three_prime_UTR 25.0%
!! AAATGATATGTGGTTTGGTT+TGG - tig0019115:180946-180965 None:intergenic 30.0%
AGATTTGATTGTTGTCTGTT+TGG - tig0019115:181038-181057 None:intergenic 30.0%
CAACAAAACAAAGAAGATTC+TGG + tig0019115:181216-181235 Msa1370340:five_prime_UTR 30.0%
! ATTCTGGAGAAAGTTAGATA+TGG + tig0019115:181232-181251 Msa1370340:exon 30.0%
!! CTTTTGAAAGAGATGAGAAA+TGG - tig0019115:181338-181357 None:intergenic 30.0%
AGCAAAAGTAAAAAAGAAGG+TGG - tig0019115:181590-181609 None:intergenic 30.0%
AACTTAAGATATGTTGTGGT+TGG + tig0019115:181660-181679 Msa1370340:three_prime_UTR 30.0%
CTAAACTAGTACATCCAAAT+TGG - tig0019115:181748-181767 None:intergenic 30.0%
! TGTACTAGTTTAGTTTCTTC+AGG + tig0019115:181755-181774 Msa1370340:intron 30.0%
CGTTCCAAACCAAATATTAT+TGG + tig0019115:181834-181853 Msa1370340:intron 30.0%
!! TTTTTCAAAACCGAATTGGT+CGG + tig0019115:181909-181928 Msa1370340:intron 30.0%
TGTGATACTAAGTTTCTGTT+TGG + tig0019115:182099-182118 Msa1370340:intron 30.0%
GTGATACTAAGTTTCTGTTT+GGG + tig0019115:182100-182119 Msa1370340:intron 30.0%
TTTGGATGTAGTGTTTATGA+GGG - tig0019115:182302-182321 None:intergenic 30.0%
TGTCATAAGCTATTCCTTTA+GGG - tig0019115:182329-182348 None:intergenic 30.0%
ATGTCATAAGCTATTCCTTT+AGG - tig0019115:182330-182349 None:intergenic 30.0%
GCTTATGACATATCTAAGAA+TGG + tig0019115:182339-182358 Msa1370340:intron 30.0%
! ACCACAAGTTAAGGATTTTA+AGG + tig0019115:182669-182688 Msa1370340:three_prime_UTR 30.0%
TAATGGAAAACAGTAACCTA+CGG - tig0019115:182753-182772 None:intergenic 30.0%
TAATAACACATACCCTTTCA+CGG + tig0019115:182849-182868 Msa1370340:intron 30.0%
GATTAAATCGATAAAACGCT+AGG + tig0019115:183094-183113 Msa1370340:intron 30.0%
AGACAACTGGAAATAGATAT+TGG - tig0019115:183137-183156 None:intergenic 30.0%
CAAATACTGTAATACTACGA+TGG - tig0019115:183246-183265 None:intergenic 30.0%
AATAAAGTTTACTGCCATGA+TGG + tig0019115:183302-183321 Msa1370340:intron 30.0%
AAAAGATAAACTCAAAACCG+TGG + tig0019115:183381-183400 Msa1370340:intron 30.0%
TTCAACAGGTATAATAACCA+CGG - tig0019115:183401-183420 None:intergenic 30.0%
AATGGTAAAACCATGGTAAA+TGG - tig0019115:183433-183452 None:intergenic 30.0%
TCAAACAAATGGTAAAACCA+TGG - tig0019115:183440-183459 None:intergenic 30.0%
TACTTTAATCCTCTTGCTAA+AGG - tig0019115:183473-183492 None:intergenic 30.0%
GCAGTCTGAATTATAAATAC+AGG - tig0019115:183512-183531 None:intergenic 30.0%
! ATATAGGTTGAAAGGGAAAA+GGG - tig0019115:183552-183571 None:intergenic 30.0%
! AATATAGGTTGAAAGGGAAA+AGG - tig0019115:183553-183572 None:intergenic 30.0%
AAGCAAAAATGAGTCAAAGA+AGG + tig0019115:183851-183870 Msa1370340:intron 30.0%
!!! ACTCGTTTTTTCTTGTAGAT+AGG + tig0019115:183922-183941 Msa1370340:intron 30.0%
!! GTGCTTAAGCTTTAAAATCT+AGG - tig0019115:184174-184193 None:intergenic 30.0%
!! AAAATTTGTTGGAGAAACAC+AGG - tig0019115:184198-184217 None:intergenic 30.0%
! GTGTTTCTCCAACAAATTTT+TGG + tig0019115:184198-184217 Msa1370340:intron 30.0%
CGTTAATTTCATGTGTTAAG+TGG - tig0019115:184577-184596 None:intergenic 30.0%
TTAACACATGAAATTAACGG+AGG + tig0019115:184578-184597 Msa1370340:intron 30.0%
TAACACATGAAATTAACGGA+GGG + tig0019115:184579-184598 Msa1370340:intron 30.0%
TGGTAAATCAATCAACAACA+TGG + tig0019115:184723-184742 Msa1370340:intron 30.0%
ATGTTAGACAGACAACAAAT+TGG - tig0019115:184792-184811 None:intergenic 30.0%
AAATCATACCTTTCTAGGTA+AGG - tig0019115:184922-184941 None:intergenic 30.0%
TTAATAGAAGGTAAGGTTAG+AGG - tig0019115:185027-185046 None:intergenic 30.0%
ATACACCTTTACTAAAGAGA+AGG - tig0019115:185122-185141 None:intergenic 30.0%
! AAAAAAGTTGGATTGGAGAT+AGG - tig0019115:185317-185336 None:intergenic 30.0%
GTATTATGTGAATGACAGTA+TGG + tig0019115:185389-185408 Msa1370340:intron 30.0%
GATCCTAATTTGAGTGAAAA+AGG + tig0019115:185818-185837 Msa1370340:three_prime_UTR 30.0%
TCCTAATTTGAGTGAAAAAG+GGG + tig0019115:185820-185839 Msa1370340:three_prime_UTR 30.0%
ATTATGTAGCTGATCCTATA+TGG + tig0019115:186322-186341 Msa1370340:three_prime_UTR 30.0%
!! ACTTCATTAGTCTTTGGAGT+TGG - tig0019115:181448-181467 None:intergenic 35.0%
ACTGAATCTTCCAATCAACT+GGG - tig0019115:181501-181520 None:intergenic 35.0%
GGCAGCAAAAGTAAAAAAGA+AGG - tig0019115:181593-181612 None:intergenic 35.0%
CGACAAGTGATTATGCTTAT+AGG - tig0019115:181614-181633 None:intergenic 35.0%
TTAAGATATGTTGTGGTTGG+TGG + tig0019115:181663-181682 Msa1370340:three_prime_UTR 35.0%
TAGTACATCCAAATTGGCAT+CGG - tig0019115:181742-181761 None:intergenic 35.0%
TAGTGAAAAACCACATGAAC+TGG + tig0019115:181875-181894 Msa1370340:intron 35.0%
ATACTAAGTTTCTGTTTGGG+AGG + tig0019115:182103-182122 Msa1370340:intron 35.0%
TACTAAGTTTCTGTTTGGGA+GGG + tig0019115:182104-182123 Msa1370340:intron 35.0%
GTTTGGATGTAGTGTTTATG+AGG - tig0019115:182303-182322 None:intergenic 35.0%
TACATCCAAACATACCCTAA+AGG + tig0019115:182312-182331 Msa1370340:intron 35.0%
!! CTATTCCTTTAGGGTATGTT+TGG - tig0019115:182320-182339 None:intergenic 35.0%
TATTGCAAGTAGAAGTGAGT+AGG - tig0019115:182578-182597 None:intergenic 35.0%
! GCCTTAAAATCCTTAACTTG+TGG - tig0019115:182673-182692 None:intergenic 35.0%
!!! CAAGTTAAGGATTTTAAGGC+TGG + tig0019115:182673-182692 Msa1370340:three_prime_UTR 35.0%
! GTTAGTTTCAGTCGGTTAAA+TGG + tig0019115:183008-183027 Msa1370340:intron 35.0%
TGTCACGTTAAGTGATATTC+TGG + tig0019115:183036-183055 Msa1370340:intron 35.0%
TAGTACACGTAAGCAAAAGT+CGG + tig0019115:183070-183089 Msa1370340:intron 35.0%
TAAAAGAGGAAGAAGACAAC+TGG - tig0019115:183150-183169 None:intergenic 35.0%
ATACTACGATGGTACATTTC+TGG - tig0019115:183235-183254 None:intergenic 35.0%
CATGGCAGTAAACTTTATTC+CGG - tig0019115:183301-183320 None:intergenic 35.0%
! TCTTTTACCCACAAATGAGT+TGG - tig0019115:183367-183386 None:intergenic 35.0%
GGTTATTATACCTGTTGAAC+AGG + tig0019115:183402-183421 Msa1370340:intron 35.0%
AATGGAGTATATCCATACCA+TGG - tig0019115:183822-183841 None:intergenic 35.0%
CTGTTAGCATAGACATTGTA+TGG - tig0019115:183978-183997 None:intergenic 35.0%
CAATGTCTATGCTAACAGAA+CGG + tig0019115:183980-183999 Msa1370340:intron 35.0%
TAAGTGGCCCAAAAATTTGT+TGG - tig0019115:184209-184228 None:intergenic 35.0%
!! AAATTTTTGGGCCACTTATC+AGG + tig0019115:184211-184230 Msa1370340:intron 35.0%
AATCTGCTTATCCTGATAAG+TGG - tig0019115:184225-184244 None:intergenic 35.0%
TTAAAAGACAGACTTGACTC+AGG + tig0019115:184298-184317 Msa1370340:intron 35.0%
GTACACGTAAGAAAAAGTCA+GGG - tig0019115:184493-184512 None:intergenic 35.0%
AGTACACGTAAGAAAAAGTC+AGG - tig0019115:184494-184513 None:intergenic 35.0%
!! GATTACTACTTTTGGCCAAT+TGG + tig0019115:184703-184722 Msa1370340:intron 35.0%
AATCAATCAACAACATGGAG+TGG + tig0019115:184728-184747 Msa1370340:intron 35.0%
AGACAACAAATTGGAATGGT+TGG - tig0019115:184783-184802 None:intergenic 35.0%
AGACAGACAACAAATTGGAA+TGG - tig0019115:184787-184806 None:intergenic 35.0%
AGGTAAGGCTAATCAAAACA+AGG - tig0019115:184907-184926 None:intergenic 35.0%
!! TTGATTAGCCTTACCTAGAA+AGG + tig0019115:184911-184930 Msa1370340:intron 35.0%
ACAAACTACATCTCCAAACA+AGG - tig0019115:184959-184978 None:intergenic 35.0%
TTATGTGAATGACAGTATGG+AGG + tig0019115:185392-185411 Msa1370340:intron 35.0%
AATTCCTCCAATTTCTGTGA+GGG - tig0019115:185531-185550 None:intergenic 35.0%
TAATTCCTCCAATTTCTGTG+AGG - tig0019115:185532-185551 None:intergenic 35.0%
ATTGGAGGAATTAAGCTTGA+TGG + tig0019115:185539-185558 Msa1370340:three_prime_UTR 35.0%
TTGGAGGAATTAAGCTTGAT+GGG + tig0019115:185540-185559 Msa1370340:three_prime_UTR 35.0%
! ATTGACTTCGTTAAGAGCTT+AGG + tig0019115:185680-185699 Msa1370340:three_prime_UTR 35.0%
!!! GCATCGTATTTTTTACCAGA+TGG - tig0019115:185758-185777 None:intergenic 35.0%
TTAGGATCAAAAGTTGACCA+CGG - tig0019115:185806-185825 None:intergenic 35.0%
!! ACCCCTTTTTCACTCAAATT+AGG - tig0019115:185824-185843 None:intergenic 35.0%
GCAAAAGTCAACATTGAACT+TGG - tig0019115:185869-185888 None:intergenic 35.0%
!!! TACTTTTTCGAAGAAGCGTT+TGG + tig0019115:185901-185920 Msa1370340:three_prime_UTR 35.0%
! CAATGATTTTTCCAGTAGCA+TGG - tig0019115:186066-186085 None:intergenic 35.0%
AATCACTCATCAAACAAGAG+AGG - tig0019115:186276-186295 None:intergenic 35.0%
!! TTAGTCTTTGGAGTTGGTAC+AGG - tig0019115:181442-181461 None:intergenic 40.0%
GACTGAATCTTCCAATCAAC+TGG - tig0019115:181502-181521 None:intergenic 40.0%
GTTGATTGGAAGATTCAGTC+TGG + tig0019115:181502-181521 Msa1370340:CDS 40.0%
! GGTATGTGAGGAAATTTTCG+AGG - tig0019115:181550-181569 None:intergenic 40.0%
TGTGTCATACAAGGTATGTG+AGG - tig0019115:181562-181581 None:intergenic 40.0%
AGTACATCCAAATTGGCATC+GGG - tig0019115:181741-181760 None:intergenic 40.0%
AAACCACATGAACTGGATTC+AGG + tig0019115:181882-181901 Msa1370340:intron 40.0%
ACTAAGTTTCTGTTTGGGAG+GGG + tig0019115:182105-182124 Msa1370340:intron 40.0%
TGTAGTGTTTATGAGGGCAA+GGG - tig0019115:182296-182315 None:intergenic 40.0%
ATGTAGTGTTTATGAGGGCA+AGG - tig0019115:182297-182316 None:intergenic 40.0%
ATTCCTTTGATCTTGGGACT+TGG + tig0019115:182606-182625 Msa1370340:intron 40.0%
AATCCAAGTCCCAAGATCAA+AGG - tig0019115:182612-182631 None:intergenic 40.0%
AGAGATTGGACCACAAGTTA+AGG + tig0019115:182660-182679 Msa1370340:three_prime_UTR 40.0%
TCTCTTTCTTTCACTTCCGT+AGG + tig0019115:182734-182753 Msa1370340:intron 40.0%
! GTCCTTCTGTTAGTTTCAGT+CGG + tig0019115:183000-183019 Msa1370340:intron 40.0%
AACCGACTGAAACTAACAGA+AGG - tig0019115:183005-183024 None:intergenic 40.0%
AGTACACGTAAGCAAAAGTC+GGG + tig0019115:183071-183090 Msa1370340:intron 40.0%
CTGGTTTCAGCGAATAAAAG+AGG - tig0019115:183164-183183 None:intergenic 40.0%
CTTACCACCAACTCATTTGT+GGG + tig0019115:183357-183376 Msa1370340:intron 40.0%
! TTTACCCACAAATGAGTTGG+TGG - tig0019115:183364-183383 None:intergenic 40.0%
CTACCTACAGCAATTACAAG+CGG + tig0019115:183584-183603 Msa1370340:intron 40.0%
TAACCGCTTGTAATTGCTGT+AGG - tig0019115:183590-183609 None:intergenic 40.0%
GAGAGAGAATGAGTCAAAGA+AGG + tig0019115:183748-183767 Msa1370340:intron 40.0%
TTTCTTGTAGATAGGAACGG+AGG + tig0019115:183930-183949 Msa1370340:intron 40.0%
TTCTTGTAGATAGGAACGGA+GGG + tig0019115:183931-183950 Msa1370340:intron 40.0%
! ACCATGGGAGTGTAAAGAAT+GGG - tig0019115:184370-184389 None:intergenic 40.0%
CTCCATAATTTAGGGACCAT+GGG - tig0019115:184385-184404 None:intergenic 40.0%
TCTCCATAATTTAGGGACCA+TGG - tig0019115:184386-184405 None:intergenic 40.0%
! TCTGATTTGAGCGACCAAAT+TGG + tig0019115:184651-184670 Msa1370340:intron 40.0%
! CTGATTTGAGCGACCAAATT+GGG + tig0019115:184652-184671 Msa1370340:intron 40.0%
ATGTCTGGTAGGGTCAAATA+AGG - tig0019115:184815-184834 None:intergenic 40.0%
TTATTTGACCCTACCAGACA+TGG + tig0019115:184814-184833 Msa1370340:intron 40.0%
TATTTGACCCTACCAGACAT+GGG + tig0019115:184815-184834 Msa1370340:intron 40.0%
ATTAACCTTCCCTCCTTGTT+TGG + tig0019115:184943-184962 Msa1370340:intron 40.0%
ACTACATCTCCAAACAAGGA+GGG - tig0019115:184955-184974 None:intergenic 40.0%
AACTACATCTCCAAACAAGG+AGG - tig0019115:184956-184975 None:intergenic 40.0%
ATATCTCGTGATCAATCACG+TGG - tig0019115:184991-185010 None:intergenic 40.0%
TGAACTTTCACAACCATGAG+GGG - tig0019115:185074-185093 None:intergenic 40.0%
CTGAACTTTCACAACCATGA+GGG - tig0019115:185075-185094 None:intergenic 40.0%
TCTGAACTTTCACAACCATG+AGG - tig0019115:185076-185095 None:intergenic 40.0%
GTGCATATGTACCACATGTT+GGG - tig0019115:185251-185270 None:intergenic 40.0%
AACATGTGGTACATATGCAC+CGG + tig0019115:185251-185270 Msa1370340:intron 40.0%
! ATATGCACCGGTAACATTGA+AGG + tig0019115:185263-185282 Msa1370340:intron 40.0%
TGGGAAACCTTCAATGTTAC+CGG - tig0019115:185273-185292 None:intergenic 40.0%
!! CAGTCATAGAGTAGTGGATT+GGG - tig0019115:185292-185311 None:intergenic 40.0%
!! TCAGTCATAGAGTAGTGGAT+TGG - tig0019115:185293-185312 None:intergenic 40.0%
TAGGATCAGTCATAGAGTAG+TGG - tig0019115:185298-185317 None:intergenic 40.0%
CTGTTCAACTAGCCAAACTA+GGG + tig0019115:185621-185640 Msa1370340:three_prime_UTR 40.0%
TCTTGACTACAAAACTCCAG+AGG + tig0019115:185715-185734 Msa1370340:three_prime_UTR 40.0%
CTTGACTACAAAACTCCAGA+GGG + tig0019115:185716-185735 Msa1370340:three_prime_UTR 40.0%
CGCTTAACAGTTACAACGAA+TGG - tig0019115:185929-185948 None:intergenic 40.0%
GTTGTAACTGTTAAGCGTGA+AGG + tig0019115:185932-185951 Msa1370340:three_prime_UTR 40.0%
!! TGTTTGGACCGATTTGTGGA+AGG - tig0019115:181022-181041 None:intergenic 45.0%
!! TGTCTGTTTGGACCGATTTG+TGG - tig0019115:181026-181045 None:intergenic 45.0%
GCTCTTCAGTACAGTTCCTA+TGG + tig0019115:181272-181291 Msa1370340:CDS 45.0%
CTTCAGTACAGTTCCTATGG+CGG + tig0019115:181275-181294 Msa1370340:CDS 45.0%
CTAGCATCAACCCAGTTGAT+TGG + tig0019115:181488-181507 Msa1370340:CDS 45.0%
AGATTCAGTCTGGTGCTCTA+AGG + tig0019115:181512-181531 Msa1370340:CDS 45.0%
GATTCAGTCTGGTGCTCTAA+GGG + tig0019115:181513-181532 Msa1370340:CDS 45.0%
GTGGATCAGTGTGTCATACA+AGG - tig0019115:181571-181590 None:intergenic 45.0%
! TCCAAATTGGCATCGGGAAA+CGG - tig0019115:181735-181754 None:intergenic 45.0%
GAACCTGAATCCAGTTCATG+TGG - tig0019115:181888-181907 None:intergenic 45.0%
! ATGAGATTGGCCGACCAATT+CGG - tig0019115:181922-181941 None:intergenic 45.0%
CTAAGTTTCTGTTTGGGAGG+GGG + tig0019115:182106-182125 Msa1370340:intron 45.0%
TAAGTTTCTGTTTGGGAGGG+GGG + tig0019115:182107-182126 Msa1370340:intron 45.0%
TGATCTTGGGACTTGGATTC+AGG + tig0019115:182613-182632 Msa1370340:intron 45.0%
GTACACGTAAGCAAAAGTCG+GGG + tig0019115:183072-183091 Msa1370340:intron 45.0%
TCACAGGAATAAGGCCATCA+TGG - tig0019115:183319-183338 None:intergenic 45.0%
GCTTACCACCAACTCATTTG+TGG + tig0019115:183356-183375 Msa1370340:intron 45.0%
AATGGTGAGACCTGTTCAAC+AGG - tig0019115:183415-183434 None:intergenic 45.0%
ACAGGTCTCACCATTTACCA+TGG + tig0019115:183420-183439 Msa1370340:intron 45.0%
AGGTTGAAAGGGAAAAGGGA+GGG - tig0019115:183548-183567 None:intergenic 45.0%
! TAGGTTGAAAGGGAAAAGGG+AGG - tig0019115:183549-183568 None:intergenic 45.0%
TGCTTATCATAGACCAGCCA+TGG + tig0019115:183802-183821 Msa1370340:intron 45.0%
ATCATAGACCAGCCATGGTA+TGG + tig0019115:183807-183826 Msa1370340:intron 45.0%
GAGTATATCCATACCATGGC+TGG - tig0019115:183818-183837 None:intergenic 45.0%
! TTTGGTCCATTTTGCGCATC+TGG + tig0019115:184070-184089 Msa1370340:intron 45.0%
! TTGGTCCATTTTGCGCATCT+GGG + tig0019115:184071-184090 Msa1370340:intron 45.0%
! ATGGGAGTGTAAAGAATGGG+TGG - tig0019115:184367-184386 None:intergenic 45.0%
ACCCATTCTTTACACTCCCA+TGG + tig0019115:184366-184385 Msa1370340:intron 45.0%
! GACCATGGGAGTGTAAAGAA+TGG - tig0019115:184371-184390 None:intergenic 45.0%
CTCCCATGGTCCCTAAATTA+TGG + tig0019115:184380-184399 Msa1370340:intron 45.0%
ATTTGACCCTACCAGACATG+GGG + tig0019115:184816-184835 Msa1370340:intron 45.0%
TTGTATCCCCATGTCTGGTA+GGG - tig0019115:184825-184844 None:intergenic 45.0%
TATGCTTGTATCCCCATGTC+TGG - tig0019115:184830-184849 None:intergenic 45.0%
GCATACACAGTGGTTGTCTA+AGG + tig0019115:184845-184864 Msa1370340:intron 45.0%
TACTTCTTCATTGCCCCTCA+TGG + tig0019115:185058-185077 Msa1370340:intron 45.0%
ATGCTCTTTGTCCCAACATG+TGG + tig0019115:185237-185256 Msa1370340:intron 45.0%
GGTGCATATGTACCACATGT+TGG - tig0019115:185252-185271 None:intergenic 45.0%
TGTGAATGACAGTATGGAGG+TGG + tig0019115:185395-185414 Msa1370340:intron 45.0%
TGTTAAGCTCTCGCTAGCTA+CGG - tig0019115:185435-185454 None:intergenic 45.0%
GGAATTAAGCTTGATGGGAC+TGG + tig0019115:185545-185564 Msa1370340:three_prime_UTR 45.0%
! TGGCGAGCAGAAGAATGTTT+TGG + tig0019115:185565-185584 Msa1370340:three_prime_UTR 45.0%
!! GTTTTGGTAACTGCTGCTTC+AGG + tig0019115:185581-185600 Msa1370340:three_prime_UTR 45.0%
GCTGTTCAACTAGCCAAACT+AGG + tig0019115:185620-185639 Msa1370340:three_prime_UTR 45.0%
AATGTTACGAGCACCACAAG+TGG - tig0019115:185663-185682 None:intergenic 45.0%
ACATCACTGAAGAGTCCATC+TGG + tig0019115:185740-185759 Msa1370340:three_prime_UTR 45.0%
GCAGTAATACATTGCACCAC+TGG + tig0019115:185776-185795 Msa1370340:three_prime_UTR 45.0%
GTTGTCGTGGATTTAACACC+TGG + tig0019115:185842-185861 Msa1370340:three_prime_UTR 45.0%
GTCAACATTGAACTTGGACC+AGG - tig0019115:185863-185882 None:intergenic 45.0%
AACTGTTAAGCGTGAAGGCT+TGG + tig0019115:185937-185956 Msa1370340:three_prime_UTR 45.0%
ACATCTCGCTCAACTAGTGA+AGG + tig0019115:185961-185980 Msa1370340:three_prime_UTR 45.0%
GCATCTTCAGCTTTGCTCAA+AGG - tig0019115:186022-186041 None:intergenic 45.0%
TGAGCAAAGCTGAAGATGCT+TGG + tig0019115:186023-186042 Msa1370340:three_prime_UTR 45.0%
GAGCAAAGCTGAAGATGCTT+GGG + tig0019115:186024-186043 Msa1370340:three_prime_UTR 45.0%
!! GCTTGGGCTAAGAGTATTGA+TGG + tig0019115:186040-186059 Msa1370340:three_prime_UTR 45.0%
!! AGTATTGATGGCCATGCTAC+TGG + tig0019115:186052-186071 Msa1370340:three_prime_UTR 45.0%
! AGCCATAGTCTCAGTTTGCT+TGG + tig0019115:186089-186108 Msa1370340:three_prime_UTR 45.0%
CACCAAGCAAACTGAGACTA+TGG - tig0019115:186094-186113 None:intergenic 45.0%
ATGTCCTGATTCTCTCTTGC+TGG + tig0019115:186220-186239 Msa1370340:three_prime_UTR 45.0%
CAAACCAGCAAGAGAGAATC+AGG - tig0019115:186227-186246 None:intergenic 45.0%
!! TTATTATTATTAAATATTGT+GGG - tig0019115:183616-183635 None:intergenic 5.0%
!! ATTATTATTATTAAATATTG+TGG - tig0019115:183617-183636 None:intergenic 5.0%
! TTGAGAAGGAGCACACTCGA+AGG - tig0019115:181692-181711 None:intergenic 50.0%
TTCGAGTGTGCTCCTTCTCA+AGG + tig0019115:181691-181710 Msa1370340:three_prime_UTR 50.0%
TCGAACCTGAGACCTTGAGA+AGG - tig0019115:181706-181725 None:intergenic 50.0%
! CCAAATTGGCATCGGGAAAC+GGG - tig0019115:181734-181753 None:intergenic 50.0%
! CAGAGATAGGGGCATGAGAT+TGG - tig0019115:181935-181954 None:intergenic 50.0%
TGTTTATGAGGGCAAGGGAG+GGG - tig0019115:182291-182310 None:intergenic 50.0%
GTGTTTATGAGGGCAAGGGA+GGG - tig0019115:182292-182311 None:intergenic 50.0%
AGTGTTTATGAGGGCAAGGG+AGG - tig0019115:182293-182312 None:intergenic 50.0%
!! GATTCAGGCACTGATGTAGC+AGG + tig0019115:182628-182647 Msa1370340:intron 50.0%
GCAGGAGAGGTAGTAGAGAT+TGG + tig0019115:182646-182665 Msa1370340:three_prime_UTR 50.0%
! TGCACATGAGCACCGTGAAA+GGG - tig0019115:182864-182883 None:intergenic 50.0%
! TTGCACATGAGCACCGTGAA+AGG - tig0019115:182865-182884 None:intergenic 50.0%
! AAAGGGAAAAGGGAGGGCAT+TGG - tig0019115:183542-183561 None:intergenic 50.0%
TGGTTCCCAGATGCGCAAAA+TGG - tig0019115:184079-184098 None:intergenic 50.0%
GGAGTGTAAAGAATGGGTGG+TGG - tig0019115:184364-184383 None:intergenic 50.0%
AACAACATGGAGTGGAGCTG+TGG + tig0019115:184736-184755 Msa1370340:intron 50.0%
CTTGTATCCCCATGTCTGGT+AGG - tig0019115:184826-184845 None:intergenic 50.0%
GGGGATACAAGCATACACAG+TGG + tig0019115:184835-184854 Msa1370340:intron 50.0%
CATCTCCAAACAAGGAGGGA+AGG - tig0019115:184951-184970 None:intergenic 50.0%
GTAAGGTTAGAGGCAGAGGA+AGG - tig0019115:185017-185036 None:intergenic 50.0%
GAAGGTAAGGTTAGAGGCAG+AGG - tig0019115:185021-185040 None:intergenic 50.0%
GGTGCGAGTTTACCTATTGC+CGG + tig0019115:185488-185507 Msa1370340:three_prime_UTR 50.0%
! TTGGTAACTGCTGCTTCAGG+TGG + tig0019115:185584-185603 Msa1370340:three_prime_UTR 50.0%
CACGTGGTTGTTCCCTAGTT+TGG - tig0019115:185636-185655 None:intergenic 50.0%
!! TAAGAGCTTAGGTGCTGACG+AGG + tig0019115:185691-185710 Msa1370340:three_prime_UTR 50.0%
CTCTTCAGTGATGTTCCCTC+TGG - tig0019115:185734-185753 None:intergenic 50.0%
ATTGCACCACTGGAATACCG+TGG + tig0019115:185786-185805 Msa1370340:three_prime_UTR 50.0%
AGTTGACCACGGTATTCCAG+TGG - tig0019115:185795-185814 None:intergenic 50.0%
GAGTGAAAAAGGGGTTGTCG+TGG + tig0019115:185829-185848 Msa1370340:three_prime_UTR 50.0%
CTCGCTCAACTAGTGAAGGA+TGG + tig0019115:185965-185984 Msa1370340:three_prime_UTR 50.0%
CAGTACAGTTCCTATGGCGG+AGG + tig0019115:181278-181297 Msa1370340:CDS 55.0%
CGGAGGAGTCTCTGGATTGA+AGG + tig0019115:181295-181314 Msa1370340:CDS 55.0%
GTGCTCCTTCTCAAGGTCTC+AGG + tig0019115:181698-181717 Msa1370340:three_prime_UTR 55.0%
CCCGTTTCCCGATGCCAATT+TGG + tig0019115:181731-181750 Msa1370340:intron 55.0%
! TCTGTTTGGGAGGGGGGTTT+TGG + tig0019115:182113-182132 Msa1370340:intron 55.0%
!!! TTTGGGAGGGGGGTTTTGGA+GGG + tig0019115:182117-182136 Msa1370340:intron 55.0%
!! AGGCACTGATGTAGCAGGAG+AGG + tig0019115:182633-182652 Msa1370340:intron 55.0%
AACATGGAGTGGAGCTGTGG+AGG + tig0019115:184739-184758 Msa1370340:intron 55.0%
AGCTGAGACTTCAGGTGGTC+TGG - tig0019115:185462-185481 None:intergenic 55.0%
TCAGCAGCTGAGACTTCAGG+TGG - tig0019115:185467-185486 None:intergenic 55.0%
CCTTCAGCAGCTGAGACTTC+AGG - tig0019115:185470-185489 None:intergenic 55.0%
CCTGAAGTCTCAGCTGCTGA+AGG + tig0019115:185467-185486 Msa1370340:three_prime_UTR 55.0%
CGTGACGCCCTCACAGAAAT+TGG + tig0019115:185521-185540 Msa1370340:three_prime_UTR 55.0%
GACGCCCTCACAGAAATTGG+AGG + tig0019115:185524-185543 Msa1370340:three_prime_UTR 55.0%
! ACTGCTGCTTCAGGTGGTGT+AGG + tig0019115:185590-185609 Msa1370340:three_prime_UTR 55.0%
AACCACGTGACAGCCACTTG+TGG + tig0019115:185647-185666 Msa1370340:three_prime_UTR 55.0%
! TCCTATGGCGGAGGAGTCTC+TGG + tig0019115:181287-181306 Msa1370340:CDS 60.0%
TCCAGAGACTCCTCCGCCAT+AGG - tig0019115:181291-181310 None:intergenic 60.0%
!! GTTTGGGAGGGGGGTTTTGG+AGG + tig0019115:182116-182135 Msa1370340:intron 60.0%
TATGAGGGCAAGGGAGGGGA+GGG - tig0019115:182287-182306 None:intergenic 60.0%
TTATGAGGGCAAGGGAGGGG+AGG - tig0019115:182288-182307 None:intergenic 60.0%
CGAGCTGTGAGACCGGCAAT+AGG - tig0019115:185503-185522 None:intergenic 60.0%
CACCACAAGTGGCTGTCACG+TGG - tig0019115:185652-185671 None:intergenic 60.0%
GGCGTCACGAGCTGTGAGAC+CGG - tig0019115:185510-185529 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0019115 gene 180943 186372 180943 ID=Msa1370340;Name=Msa1370340
tig0019115 mRNA 180943 186372 180943 ID=Msa1370340-mRNA-1;Parent=Msa1370340;Name=Msa1370340-mRNA-1;_AED=0.31;_eAED=0.31;_QI=308|1|1|1|0.66|0.75|4|1192|74
tig0019115 exon 180943 181316 180943 ID=Msa1370340-mRNA-1:exon:1621;Parent=Msa1370340-mRNA-1
tig0019115 exon 181427 181719 181427 ID=Msa1370340-mRNA-1:exon:1622;Parent=Msa1370340-mRNA-1
tig0019115 exon 182635 182726 182635 ID=Msa1370340-mRNA-1:exon:1623;Parent=Msa1370340-mRNA-1
tig0019115 exon 185407 186372 185407 ID=Msa1370340-mRNA-1:exon:1624;Parent=Msa1370340-mRNA-1
tig0019115 five_prime_UTR 180943 181250 180943 ID=Msa1370340-mRNA-1:five_prime_utr;Parent=Msa1370340-mRNA-1
tig0019115 CDS 181251 181316 181251 ID=Msa1370340-mRNA-1:cds;Parent=Msa1370340-mRNA-1
tig0019115 CDS 181427 181585 181427 ID=Msa1370340-mRNA-1:cds;Parent=Msa1370340-mRNA-1
tig0019115 three_prime_UTR 181586 181719 181586 ID=Msa1370340-mRNA-1:three_prime_utr;Parent=Msa1370340-mRNA-1
tig0019115 three_prime_UTR 182635 182726 182635 ID=Msa1370340-mRNA-1:three_prime_utr;Parent=Msa1370340-mRNA-1
tig0019115 three_prime_UTR 185407 186372 185407 ID=Msa1370340-mRNA-1:three_prime_utr;Parent=Msa1370340-mRNA-1
Gene Sequence

>Msa1370340

ATGGCTGCGAAACTTATGCAAGCTCTTCAGTACAGTTCCTATGGCGGAGGAGTCTCTGGATTGAAGCATGTTGAAGTTCCTGTACCAACTCCAAAGACTAATGAAGTTTTACTCAAATTGGAAGCAACTAGCATCAACCCAGTTGATTGGAAGATTCAGTCTGGTGCTCTAAGGGCTATCTTTTTGCCTCGAAAATTTCCTCACATACCTTGTATGACACACTGA
Protein sequence

>Msa1370340

MAAKLMQALQYSSYGGGVSGLKHVEVPVPTPKTNEVLLKLEATSINPVDWKIQSGALRAIFLPRKFPHIPCMTH*