Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600420 | XP_003605980.1 | 99.760 | 416 | 1 | 0 | 1 | 416 | 1 | 416 | 0.0 | 855 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600420 | sp|Q04960|DNJH_CUCSA | 86.396 | 419 | 48 | 4 | 1 | 416 | 1 | 413 | 0.0 | 681 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600420 | G7JES3 | 99.760 | 416 | 1 | 0 | 1 | 416 | 1 | 416 | 0.0 | 855 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024930 | Msa0600420 | 0.800756 | 1.241079e-48 | -8.615850e-47 |
| Msa0103790 | Msa0600420 | 0.806054 | 9.911223e-50 | -8.615850e-47 |
| Msa0106710 | Msa0600420 | 0.822068 | 2.887055e-53 | -8.615850e-47 |
| Msa0139670 | Msa0600420 | 0.818073 | 2.371219e-52 | -8.615850e-47 |
| Msa0183870 | Msa0600420 | 0.806120 | 9.595770e-50 | -8.615850e-47 |
| Msa0197650 | Msa0600420 | 0.809359 | 1.967234e-50 | -8.615850e-47 |
| Msa0207670 | Msa0600420 | 0.804154 | 2.474811e-49 | -8.615850e-47 |
| Msa0217670 | Msa0600420 | 0.818775 | 1.643358e-52 | -8.615850e-47 |
| Msa0385500 | Msa0600420 | 0.833234 | 5.995233e-56 | -8.615850e-47 |
| Msa0403770 | Msa0600420 | 0.803166 | 3.969149e-49 | -8.615850e-47 |
| Msa0443430 | Msa0600420 | 0.810631 | 1.047365e-50 | -8.615850e-47 |
| Msa0257490 | Msa0600420 | 0.839989 | 1.139326e-57 | -8.615850e-47 |
| Msa0270380 | Msa0600420 | 0.803128 | 4.041240e-49 | -8.615850e-47 |
| Msa0278570 | Msa0600420 | 0.811946 | 5.427632e-51 | -8.615850e-47 |
| Msa0281530 | Msa0600420 | 0.801104 | 1.053873e-48 | -8.615850e-47 |
| Msa0296790 | Msa0600420 | 0.838250 | 3.214316e-57 | -8.615850e-47 |
| Msa0321690 | Msa0600420 | 0.805998 | 1.018087e-49 | -8.615850e-47 |
| Msa0491000 | Msa0600420 | 0.815938 | 7.153059e-52 | -8.615850e-47 |
| Msa0542560 | Msa0600420 | 0.802369 | 5.798030e-49 | -8.615850e-47 |
| Msa0544160 | Msa0600420 | 0.806680 | 7.314498e-50 | -8.615850e-47 |
| Msa0600080 | Msa0600420 | 0.802947 | 4.405644e-49 | -8.615850e-47 |
| Msa0600420 | Msa0600450 | 0.810035 | 1.408103e-50 | -8.615850e-47 |
| Msa0600420 | Msa0622790 | 0.802741 | 4.857500e-49 | -8.615850e-47 |
| Msa0600420 | Msa0679360 | 0.804261 | 2.351026e-49 | -8.615850e-47 |
| Msa0600420 | Msa0682680 | 0.808492 | 3.015953e-50 | -8.615850e-47 |
| Msa0600420 | Msa0709120 | 0.819029 | 1.439469e-52 | -8.615850e-47 |
| Msa0600420 | Msa0905750 | 0.833732 | 4.502906e-56 | -8.615850e-47 |
| Msa0600420 | Msa0974950 | 0.812966 | 3.249795e-51 | -8.615850e-47 |
| Msa0600420 | Msa0980540 | 0.808089 | 3.675703e-50 | -8.615850e-47 |
| Msa0600420 | Msa1007290 | 0.827760 | 1.309031e-54 | -8.615850e-47 |
| Msa0600420 | Msa1037520 | 0.814047 | 1.879112e-51 | -8.615850e-47 |
| Msa0600420 | Msa1158640 | -0.809848 | 1.544400e-50 | -8.615850e-47 |
| Msa0600420 | Msa1178580 | 0.854796 | 9.695284e-62 | -8.615850e-47 |
| Msa0600420 | Msa1200320 | 0.801428 | 9.047718e-49 | -8.615850e-47 |
| Msa0600420 | Msa1228040 | 0.801838 | 7.452921e-49 | -8.615850e-47 |
| Msa0600420 | Msa1233850 | 0.859331 | 4.452878e-63 | -8.615850e-47 |
| Msa0600420 | Msa1271130 | 0.828760 | 7.513606e-55 | -8.615850e-47 |
| Msa0600420 | Msa1276150 | 0.847277 | 1.280319e-59 | -8.615850e-47 |
| Msa0600420 | Msa1370590 | 0.806453 | 8.166318e-50 | -8.615850e-47 |
| Msa0600420 | Msa1384100 | 0.802827 | 4.663702e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600420 | MtrunA17_Chr4g0025401 | 99.760 | 416 | 1 | 0 | 1 | 416 | 1 | 416 | 0.0 | 855 |
| Msa0600420 | MtrunA17_Chr2g0322181 | 88.544 | 419 | 43 | 3 | 1 | 416 | 1 | 417 | 0.0 | 693 |
| Msa0600420 | MtrunA17_Chr8g0334811 | 69.740 | 423 | 121 | 5 | 1 | 416 | 1 | 423 | 0.0 | 577 |
| Msa0600420 | MtrunA17_Chr7g0269841 | 38.218 | 348 | 179 | 9 | 14 | 356 | 27 | 343 | 1.95e-58 | 194 |
| Msa0600420 | MtrunA17_Chr4g0040501 | 33.053 | 357 | 207 | 10 | 14 | 356 | 5 | 343 | 7.01e-49 | 169 |
| Msa0600420 | MtrunA17_Chr2g0282741 | 33.520 | 358 | 199 | 10 | 14 | 356 | 5 | 338 | 2.65e-48 | 167 |
| Msa0600420 | MtrunA17_Chr3g0123861 | 34.097 | 349 | 213 | 9 | 14 | 353 | 83 | 423 | 2.52e-47 | 167 |
| Msa0600420 | MtrunA17_Chr2g0333221 | 29.952 | 414 | 259 | 12 | 11 | 402 | 68 | 472 | 5.74e-47 | 168 |
| Msa0600420 | MtrunA17_Chr2g0324921 | 32.402 | 358 | 199 | 8 | 14 | 356 | 5 | 334 | 4.32e-46 | 162 |
| Msa0600420 | MtrunA17_Chr4g0010781 | 33.903 | 351 | 190 | 11 | 14 | 345 | 87 | 414 | 1.02e-45 | 163 |
| Msa0600420 | MtrunA17_Chr6g0478651 | 31.768 | 362 | 219 | 11 | 14 | 354 | 69 | 423 | 1.88e-44 | 162 |
| Msa0600420 | MtrunA17_Chr2g0282761 | 34.302 | 344 | 198 | 11 | 14 | 344 | 5 | 333 | 4.28e-43 | 154 |
| Msa0600420 | MtrunA17_Chr3g0138471 | 30.899 | 356 | 198 | 6 | 14 | 356 | 5 | 325 | 7.20e-41 | 147 |
| Msa0600420 | MtrunA17_Chr4g0006391 | 30.905 | 398 | 156 | 12 | 14 | 356 | 5 | 338 | 9.31e-41 | 147 |
| Msa0600420 | MtrunA17_Chr3g0087741 | 30.194 | 361 | 210 | 15 | 1 | 345 | 80 | 414 | 3.99e-36 | 137 |
| Msa0600420 | MtrunA17_Chr5g0426951 | 27.913 | 369 | 222 | 14 | 1 | 348 | 70 | 415 | 2.97e-28 | 115 |
| Msa0600420 | MtrunA17_Chr5g0415751 | 35.172 | 145 | 92 | 1 | 212 | 356 | 18 | 160 | 5.40e-27 | 105 |
| Msa0600420 | MtrunA17_Chr3g0093111 | 26.064 | 376 | 177 | 12 | 14 | 356 | 3 | 310 | 6.87e-26 | 106 |
| Msa0600420 | MtrunA17_Chr3g0124801 | 33.793 | 145 | 93 | 2 | 213 | 356 | 149 | 291 | 2.43e-18 | 85.1 |
| Msa0600420 | MtrunA17_Chr2g0277721 | 31.250 | 144 | 98 | 1 | 213 | 356 | 117 | 259 | 2.87e-16 | 78.6 |
| Msa0600420 | MtrunA17_Chr8g0352451 | 47.368 | 95 | 40 | 3 | 12 | 102 | 71 | 159 | 5.16e-14 | 73.2 |
| Msa0600420 | MtrunA17_Chr1g0209551 | 52.941 | 68 | 28 | 1 | 15 | 78 | 18 | 85 | 5.92e-14 | 73.2 |
| Msa0600420 | MtrunA17_Chr5g0399201 | 41.250 | 80 | 40 | 1 | 10 | 82 | 9 | 88 | 1.87e-13 | 72.0 |
| Msa0600420 | MtrunA17_Chr5g0393371 | 42.105 | 95 | 45 | 3 | 12 | 102 | 5 | 93 | 3.45e-13 | 70.9 |
| Msa0600420 | MtrunA17_Chr7g0263971 | 51.282 | 78 | 32 | 2 | 4 | 76 | 360 | 436 | 1.09e-12 | 69.7 |
| Msa0600420 | MtrunA17_Chr1g0159511 | 42.708 | 96 | 43 | 4 | 12 | 102 | 5 | 93 | 2.97e-12 | 67.8 |
| Msa0600420 | MtrunA17_Chr1g0159491 | 46.377 | 69 | 33 | 2 | 14 | 78 | 7 | 75 | 5.94e-12 | 61.2 |
| Msa0600420 | MtrunA17_Chr5g0415731 | 33.333 | 144 | 60 | 4 | 14 | 144 | 6 | 126 | 6.65e-12 | 63.2 |
| Msa0600420 | MtrunA17_Chr7g0242951 | 47.692 | 65 | 31 | 1 | 15 | 76 | 29 | 93 | 7.63e-12 | 67.0 |
| Msa0600420 | MtrunA17_Chr2g0307061 | 37.000 | 100 | 50 | 2 | 14 | 100 | 111 | 210 | 8.88e-12 | 66.2 |
| Msa0600420 | MtrunA17_Chr3g0091361 | 48.052 | 77 | 35 | 2 | 11 | 82 | 3 | 79 | 1.98e-11 | 63.2 |
| Msa0600420 | MtrunA17_Chr7g0271891 | 40.000 | 75 | 37 | 1 | 14 | 80 | 17 | 91 | 3.96e-11 | 61.2 |
| Msa0600420 | MtrunA17_Chr5g0414471 | 45.588 | 68 | 33 | 1 | 15 | 78 | 27 | 94 | 4.58e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600420 | AT5G22060.1 | 82.185 | 421 | 68 | 5 | 1 | 416 | 1 | 419 | 0.0 | 666 |
| Msa0600420 | AT3G44110.1 | 84.834 | 422 | 56 | 5 | 1 | 416 | 1 | 420 | 0.0 | 651 |
| Msa0600420 | AT3G44110.2 | 87.952 | 332 | 36 | 3 | 1 | 329 | 1 | 331 | 0.0 | 531 |
| Msa0600420 | AT3G62600.1 | 36.932 | 352 | 180 | 11 | 14 | 356 | 27 | 345 | 1.22e-55 | 187 |
| Msa0600420 | AT2G20560.1 | 33.618 | 351 | 206 | 7 | 14 | 356 | 5 | 336 | 9.46e-52 | 177 |
| Msa0600420 | AT1G80030.4 | 30.380 | 395 | 246 | 11 | 14 | 388 | 76 | 461 | 4.37e-48 | 171 |
| Msa0600420 | AT1G80030.2 | 30.380 | 395 | 246 | 11 | 14 | 388 | 76 | 461 | 5.23e-48 | 171 |
| Msa0600420 | AT1G80030.3 | 30.380 | 395 | 246 | 11 | 14 | 388 | 76 | 461 | 5.23e-48 | 171 |
| Msa0600420 | AT1G80030.1 | 30.380 | 395 | 246 | 11 | 14 | 388 | 76 | 461 | 5.23e-48 | 171 |
| Msa0600420 | AT2G22360.1 | 32.703 | 370 | 226 | 9 | 14 | 376 | 87 | 440 | 2.36e-46 | 165 |
| Msa0600420 | AT5G48030.1 | 34.091 | 352 | 200 | 13 | 14 | 348 | 95 | 431 | 5.18e-46 | 165 |
| Msa0600420 | AT4G28480.1 | 30.791 | 354 | 223 | 7 | 14 | 356 | 5 | 347 | 3.23e-45 | 160 |
| Msa0600420 | AT5G25530.2 | 31.856 | 361 | 200 | 10 | 14 | 356 | 5 | 337 | 2.92e-44 | 157 |
| Msa0600420 | AT5G01390.1 | 30.831 | 373 | 184 | 11 | 14 | 356 | 5 | 333 | 2.01e-43 | 155 |
| Msa0600420 | AT4G39960.1 | 31.322 | 348 | 218 | 8 | 12 | 345 | 84 | 424 | 2.06e-42 | 155 |
| Msa0600420 | AT4G39960.2 | 31.322 | 348 | 218 | 8 | 12 | 345 | 84 | 424 | 2.06e-42 | 155 |
| Msa0600420 | AT3G08910.1 | 32.105 | 380 | 157 | 12 | 14 | 356 | 5 | 320 | 6.86e-42 | 150 |
| Msa0600420 | AT1G10350.1 | 30.376 | 372 | 200 | 11 | 14 | 356 | 5 | 346 | 1.21e-41 | 150 |
| Msa0600420 | AT1G59725.1 | 31.054 | 351 | 207 | 9 | 14 | 356 | 5 | 328 | 1.42e-41 | 150 |
| Msa0600420 | AT5G25530.1 | 31.165 | 369 | 200 | 11 | 14 | 356 | 5 | 345 | 2.30e-41 | 150 |
| Msa0600420 | AT3G17830.1 | 29.859 | 355 | 219 | 9 | 12 | 345 | 62 | 407 | 6.79e-36 | 138 |
| Msa0600420 | AT1G28210.3 | 28.382 | 377 | 229 | 12 | 7 | 366 | 42 | 394 | 1.45e-34 | 132 |
| Msa0600420 | AT1G28210.1 | 28.382 | 377 | 229 | 12 | 7 | 366 | 42 | 394 | 1.80e-34 | 132 |
| Msa0600420 | AT1G28210.2 | 28.382 | 377 | 229 | 12 | 7 | 366 | 42 | 394 | 2.11e-34 | 132 |
| Msa0600420 | AT2G20550.1 | 37.931 | 145 | 88 | 1 | 212 | 356 | 141 | 283 | 1.21e-26 | 108 |
| Msa0600420 | AT2G20550.2 | 37.931 | 145 | 88 | 1 | 212 | 356 | 141 | 283 | 1.21e-26 | 108 |
| Msa0600420 | AT3G47940.1 | 29.952 | 207 | 128 | 2 | 150 | 356 | 157 | 346 | 4.96e-26 | 108 |
| Msa0600420 | AT3G47940.1 | 32.990 | 194 | 67 | 3 | 14 | 144 | 5 | 198 | 9.73e-21 | 93.2 |
| Msa0600420 | AT4G28480.2 | 35.374 | 147 | 91 | 2 | 210 | 356 | 147 | 289 | 1.53e-23 | 100 |
| Msa0600420 | AT4G28480.2 | 41.441 | 111 | 55 | 2 | 14 | 119 | 5 | 110 | 2.11e-18 | 85.5 |
| Msa0600420 | AT5G01390.2 | 35.507 | 138 | 87 | 1 | 219 | 356 | 140 | 275 | 3.42e-23 | 99.0 |
| Msa0600420 | AT5G01390.2 | 39.344 | 122 | 49 | 4 | 14 | 110 | 5 | 126 | 2.38e-16 | 79.3 |
| Msa0600420 | AT5G01390.4 | 35.870 | 184 | 68 | 6 | 14 | 147 | 5 | 188 | 1.34e-21 | 93.2 |
| Msa0600420 | AT1G11040.1 | 34.722 | 144 | 92 | 1 | 213 | 356 | 291 | 432 | 6.49e-18 | 85.9 |
| Msa0600420 | AT5G01390.3 | 39.344 | 122 | 49 | 4 | 14 | 110 | 5 | 126 | 1.48e-16 | 79.0 |
| Msa0600420 | AT1G44160.1 | 31.111 | 135 | 91 | 1 | 222 | 356 | 221 | 353 | 1.66e-15 | 77.8 |
| Msa0600420 | AT2G21510.5 | 44.211 | 95 | 43 | 3 | 12 | 102 | 5 | 93 | 2.96e-14 | 73.9 |
| Msa0600420 | AT2G21510.3 | 44.211 | 95 | 43 | 3 | 12 | 102 | 5 | 93 | 3.74e-14 | 73.6 |
| Msa0600420 | AT2G21510.1 | 44.211 | 95 | 43 | 3 | 12 | 102 | 5 | 93 | 3.74e-14 | 73.6 |
| Msa0600420 | AT2G21510.2 | 44.211 | 95 | 43 | 3 | 12 | 102 | 5 | 93 | 3.80e-14 | 73.6 |
| Msa0600420 | AT2G21510.4 | 44.211 | 95 | 43 | 3 | 12 | 102 | 5 | 93 | 3.80e-14 | 73.6 |
| Msa0600420 | AT1G77020.1 | 45.833 | 96 | 40 | 4 | 12 | 102 | 5 | 93 | 5.66e-14 | 73.6 |
| Msa0600420 | AT1G59980.2 | 47.059 | 68 | 32 | 1 | 15 | 78 | 25 | 92 | 2.85e-13 | 71.2 |
| Msa0600420 | AT3G08970.1 | 46.914 | 81 | 40 | 1 | 8 | 85 | 22 | 102 | 3.12e-13 | 72.0 |
| Msa0600420 | AT3G08970.2 | 46.914 | 81 | 40 | 1 | 8 | 85 | 22 | 102 | 3.12e-13 | 72.0 |
| Msa0600420 | AT5G03160.1 | 52.632 | 95 | 37 | 4 | 4 | 93 | 361 | 452 | 3.51e-13 | 71.6 |
| Msa0600420 | AT1G59980.1 | 47.059 | 68 | 32 | 1 | 15 | 78 | 25 | 92 | 4.38e-13 | 70.9 |
| Msa0600420 | AT5G05750.1 | 40.777 | 103 | 48 | 4 | 14 | 103 | 115 | 217 | 5.14e-13 | 69.7 |
| Msa0600420 | AT4G39150.3 | 42.553 | 94 | 44 | 3 | 12 | 101 | 5 | 92 | 1.40e-12 | 68.9 |
| Msa0600420 | AT4G39150.1 | 42.553 | 94 | 44 | 3 | 12 | 101 | 5 | 92 | 1.40e-12 | 68.9 |
| Msa0600420 | AT4G39150.2 | 42.553 | 94 | 44 | 3 | 12 | 101 | 5 | 92 | 1.40e-12 | 68.9 |
| Msa0600420 | AT1G21080.3 | 41.053 | 95 | 45 | 3 | 12 | 102 | 5 | 92 | 1.63e-12 | 68.9 |
| Msa0600420 | AT1G21080.1 | 41.053 | 95 | 45 | 3 | 12 | 102 | 5 | 92 | 1.80e-12 | 68.9 |
| Msa0600420 | AT1G68370.1 | 51.471 | 68 | 29 | 1 | 15 | 78 | 19 | 86 | 2.30e-12 | 68.6 |
| Msa0600420 | AT3G57340.1 | 39.394 | 99 | 46 | 3 | 14 | 98 | 114 | 212 | 3.11e-12 | 68.2 |
| Msa0600420 | AT3G57340.2 | 39.394 | 99 | 46 | 3 | 14 | 98 | 114 | 212 | 3.11e-12 | 68.2 |
| Msa0600420 | AT1G76700.1 | 41.053 | 95 | 46 | 3 | 12 | 102 | 5 | 93 | 4.50e-11 | 64.7 |
| Msa0600420 | AT1G24120.1 | 45.588 | 68 | 33 | 2 | 15 | 78 | 22 | 89 | 5.57e-11 | 64.7 |
| Msa0600420 | AT2G35720.1 | 38.824 | 85 | 45 | 1 | 5 | 82 | 7 | 91 | 7.66e-11 | 64.3 |
Find 154 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAACATATTAAGTATTT+TGG | 0.067293 | 4_2:+41581075 | None:intergenic |
| ATCGTGCATGTTAAGTATTT+TGG | 0.229238 | 4_2:+41581034 | None:intergenic |
| CCAAAATACTTAATATGTTT+TGG | 0.238540 | 4_2:-41581075 | Msa0600420:three_prime_UTR |
| GACATCTTCTCGTCTTTCTT+TGG | 0.252245 | 4_2:-41583837 | Msa0600420:intron |
| TACAGCAAAGGTTCTAAATC+TGG | 0.260581 | 4_2:-41582362 | Msa0600420:intron |
| TCATCCTCTCAAGGTCTCTT+TGG | 0.272658 | 4_2:-41583668 | Msa0600420:CDS |
| TTGGGATTGTGTGTGAGTTT+TGG | 0.274990 | 4_2:+41585272 | None:intergenic |
| GGAATGGGTGGTGGAGGTGG+TGG | 0.281696 | 4_2:-41583876 | Msa0600420:CDS |
| ATGGGTGGTGGAGGTGGTGG+TGG | 0.291168 | 4_2:-41583873 | Msa0600420:CDS |
| TAAAGCTTGCCCTTCATAAA+TGG | 0.299708 | 4_2:+41581509 | None:intergenic |
| CCAAGTGAGTAAGCACAAAT+TGG | 0.314955 | 4_2:+41581863 | None:intergenic |
| CTATGTAGTGTTTGGTTCAA+TGG | 0.319946 | 4_2:-41581166 | Msa0600420:three_prime_UTR |
| TTGACAACCAGCACATTTCA+TGG | 0.323834 | 4_2:+41582334 | None:intergenic |
| TTCTCTTTCTCTCATTCATT+CGG | 0.335043 | 4_2:-41585185 | Msa0600420:five_prime_UTR |
| CCAATTTGTGCTTACTCACT+TGG | 0.343644 | 4_2:-41581863 | Msa0600420:CDS |
| GAAGGAATGGGTGGTGGAGG+TGG | 0.349343 | 4_2:-41583879 | Msa0600420:CDS |
| TTGCAGCCAGACACAGTTAC+TGG | 0.349899 | 4_2:-41581994 | Msa0600420:intron |
| TTTCTGTTCAAGAGGAAAAT+CGG | 0.350195 | 4_2:-41580948 | Msa0600420:three_prime_UTR |
| TGATCAGGTGAAAGGTTTGC+AGG | 0.350853 | 4_2:-41581447 | Msa0600420:CDS |
| TACACTTCATGATGTCAATA+TGG | 0.351289 | 4_2:-41581360 | Msa0600420:CDS |
| CTGTACAAGGATAAGATGTT+TGG | 0.377450 | 4_2:-41585100 | Msa0600420:exon |
| GAAACAGCAGCAACAACAAC+AGG | 0.384498 | 4_2:-41581321 | Msa0600420:CDS |
| ACGAGGTACTATGAAATCTT+AGG | 0.390855 | 4_2:-41585052 | Msa0600420:CDS |
| ATATGGTGAGGATGCTCTTA+AGG | 0.394161 | 4_2:-41583901 | Msa0600420:CDS |
| ACACGCGAAGTTTGTTATAG+TGG | 0.400056 | 4_2:+41585220 | None:intergenic |
| GACAGAACCTATGTAGTGTT+TGG | 0.400741 | 4_2:-41581174 | Msa0600420:three_prime_UTR |
| TTCTGTTCAAGAGGAAAATC+GGG | 0.401978 | 4_2:-41580947 | Msa0600420:three_prime_UTR |
| CTTTCTATATTTATTGTCGA+TGG | 0.409435 | 4_2:-41581118 | Msa0600420:three_prime_UTR |
| TCAATATGGAAGAGGAGAAT+AGG | 0.410593 | 4_2:-41581346 | Msa0600420:CDS |
| TGAACAGGTGGTGGTGGTGG+TGG | 0.412145 | 4_2:-41583733 | Msa0600420:intron |
| TGCATTTGCTGAATCATTGA+TGG | 0.413239 | 4_2:+41582275 | None:intergenic |
| TCGTAAATCTCACGCTTCTC+AGG | 0.416703 | 4_2:+41583927 | None:intergenic |
| TCCTCTCAAGGTCTCTTTGG+AGG | 0.418220 | 4_2:-41583665 | Msa0600420:CDS |
| CTCTTGAACAGAAAAGGTTA+AGG | 0.423184 | 4_2:+41580957 | None:intergenic |
| CTTTGGAGGACCTTTACCTT+GGG | 0.425643 | 4_2:-41583651 | Msa0600420:CDS |
| CTTTACAATTGAAATCCATA+TGG | 0.429730 | 4_2:+41581001 | None:intergenic |
| AAAGACGAGAAGATGTCAAA+TGG | 0.431223 | 4_2:+41583843 | None:intergenic |
| TTCTTGTTCTTTGAACTACT+AGG | 0.431539 | 4_2:-41585140 | Msa0600420:five_prime_UTR |
| AGAGCTAGCACAAGCTTATG+AGG | 0.435011 | 4_2:-41583961 | Msa0600420:CDS |
| TAAAAGAAAACAAACCTTCT+CGG | 0.437704 | 4_2:+41584943 | None:intergenic |
| GCATCCTTGTAACGAATGTA+AGG | 0.439570 | 4_2:-41582252 | Msa0600420:CDS |
| ACAGTGTGTGCTCTACAAAA+AGG | 0.442437 | 4_2:+41581911 | None:intergenic |
| TGATCAAGACTTAGAGTGTC+GGG | 0.443069 | 4_2:+41581464 | None:intergenic |
| TCGGGATCACCACCCTTGTC+AGG | 0.444560 | 4_2:+41584962 | None:intergenic |
| ATAGGTTCTGTCCAACACTA+TGG | 0.452002 | 4_2:+41581185 | None:intergenic |
| ACAGCAAAGGTTCTAAATCT+GGG | 0.455064 | 4_2:-41582361 | Msa0600420:intron |
| AAGGAAGGAATGGGTGGTGG+AGG | 0.459284 | 4_2:-41583882 | Msa0600420:CDS |
| GCGAAGTTTGTTATAGTGGT+TGG | 0.460448 | 4_2:+41585224 | None:intergenic |
| ATAAATGGCCTCTGGTACAT+CGG | 0.461071 | 4_2:+41581524 | None:intergenic |
| ATATCCCCAGTAACTGTGTC+TGG | 0.462941 | 4_2:+41581988 | None:intergenic |
| TCTTGTTCTTTGAACTACTA+GGG | 0.467329 | 4_2:-41585139 | Msa0600420:five_prime_UTR |
| ACCAGGCTTGACAACTTCTC+CGG | 0.467557 | 4_2:+41581810 | None:intergenic |
| CACGTCTCTGCCTCCGTCCT+CGG | 0.470973 | 4_2:+41583704 | None:intergenic |
| AATTGTGATGAAGGTTTAGC+TGG | 0.472131 | 4_2:+41581416 | None:intergenic |
| TCTTTGGAGGACCTTTACCT+TGG | 0.474255 | 4_2:-41583652 | Msa0600420:CDS |
| AAAAGAAAACAAACCTTCTC+GGG | 0.479638 | 4_2:+41584944 | None:intergenic |
| ATGTCTGTCAATTGTGATGA+AGG | 0.480120 | 4_2:+41581407 | None:intergenic |
| TTTCTATATTTATTGTCGAT+GGG | 0.483100 | 4_2:-41581117 | Msa0600420:three_prime_UTR |
| TGCAGCCAGACACAGTTACT+GGG | 0.483778 | 4_2:-41581993 | Msa0600420:intron |
| GTATGAACAGGTGGTGGTGG+TGG | 0.487493 | 4_2:-41583736 | Msa0600420:intron |
| TGCCCTTCATAAATGGCCTC+TGG | 0.489076 | 4_2:+41581516 | None:intergenic |
| TCTTAGATGTCCCAAGGTAA+AGG | 0.493685 | 4_2:+41583641 | None:intergenic |
| TGTACCCTCTGTGCCCCACC+AGG | 0.495428 | 4_2:+41581272 | None:intergenic |
| CGACACTCTAAGTCTTGATC+AGG | 0.498606 | 4_2:-41581462 | Msa0600420:CDS |
| CGTGAGATTTACGATACATA+TGG | 0.500377 | 4_2:-41583918 | Msa0600420:CDS |
| GTACCAGAGGCCATTTATGA+AGG | 0.504857 | 4_2:-41581519 | Msa0600420:CDS |
| GTACCCTTACATTCGTTACA+AGG | 0.505592 | 4_2:+41582248 | None:intergenic |
| GTGAGATGGAATGGATGGTT+GGG | 0.508417 | 4_2:+41585254 | None:intergenic |
| CCAGGCTTGACAACTTCTCC+GGG | 0.508832 | 4_2:+41581811 | None:intergenic |
| CTTCTAGACCCTTCTTCCGT+GGG | 0.509635 | 4_2:-41585297 | Msa0600420:five_prime_UTR |
| GGTTCGATTTGATAAGAAGT+TGG | 0.509723 | 4_2:+41581833 | None:intergenic |
| CCCGGAGAAGTTGTCAAGCC+TGG | 0.510330 | 4_2:-41581811 | Msa0600420:intron |
| CTTGAAGTTCATGTCGAGAA+AGG | 0.510906 | 4_2:-41582152 | Msa0600420:CDS |
| CTTAAGGAAGGAATGGGTGG+TGG | 0.513608 | 4_2:-41583885 | Msa0600420:CDS |
| ACGATTGCTAAGAAACCATA+TGG | 0.514663 | 4_2:-41581016 | Msa0600420:three_prime_UTR |
| GGGGCTTCCATGAAATGTGC+TGG | 0.516637 | 4_2:-41582341 | Msa0600420:CDS |
| TCTTCTAGACCCTTCTTCCG+TGG | 0.517410 | 4_2:-41585298 | Msa0600420:five_prime_UTR |
| TTGTCAAGGAACTGGTATGA+AGG | 0.522018 | 4_2:-41582318 | Msa0600420:CDS |
| GGATGCTCTTAAGGAAGGAA+TGG | 0.523255 | 4_2:-41583892 | Msa0600420:CDS |
| TTTCAATTGTAAAGACTGAC+TGG | 0.526758 | 4_2:-41580992 | Msa0600420:three_prime_UTR |
| TGTGCTGGTTGTCAAGGAAC+TGG | 0.527018 | 4_2:-41582326 | Msa0600420:CDS |
| CTTGTATGAACAGGTGGTGG+TGG | 0.530748 | 4_2:-41583739 | Msa0600420:intron |
| GGATTAAGAGTGAGATGGAA+TGG | 0.531343 | 4_2:+41585245 | None:intergenic |
| CTAAGTCTTGATCAGGTGAA+AGG | 0.533754 | 4_2:-41581455 | Msa0600420:CDS |
| AGACCGCTGTCCACAGTGCA+AGG | 0.534307 | 4_2:-41582204 | Msa0600420:CDS |
| AAGACGAGAAGATGTCAAAT+GGG | 0.536873 | 4_2:+41583844 | None:intergenic |
| GTCTAGAAGAGTGGGAAGTA+CGG | 0.543871 | 4_2:+41585311 | None:intergenic |
| AAGGTTTCTATTAGACACCT+TGG | 0.545121 | 4_2:-41582299 | Msa0600420:CDS |
| CATTGAACCAAACACTACAT+AGG | 0.548900 | 4_2:+41581167 | None:intergenic |
| GATGCTCTTAAGGAAGGAAT+GGG | 0.551678 | 4_2:-41583891 | Msa0600420:CDS |
| TGTAACGAATGTAAGGGTAC+TGG | 0.556933 | 4_2:-41582245 | Msa0600420:CDS |
| GAAGAAGGGTCTAGAAGAGT+GGG | 0.556996 | 4_2:+41585303 | None:intergenic |
| AGTCAGAAGATTACATTCCC+TGG | 0.557761 | 4_2:-41582119 | Msa0600420:CDS |
| TTTGTGCTTACTCACTTGGA+TGG | 0.559690 | 4_2:-41581859 | Msa0600420:CDS |
| TCATGATGTCAATATGGAAG+AGG | 0.561923 | 4_2:-41581354 | Msa0600420:CDS |
| AGTGAGATGGAATGGATGGT+TGG | 0.562527 | 4_2:+41585253 | None:intergenic |
| ATATGGAAGAGGAGAATAGG+AGG | 0.568120 | 4_2:-41581343 | Msa0600420:CDS |
| TCCACAGTGCAAGGGAGAGA+AGG | 0.570484 | 4_2:-41582195 | Msa0600420:CDS |
| TAAGAGTGAGATGGAATGGA+TGG | 0.573520 | 4_2:+41585249 | None:intergenic |
| AGTAGAATCAGACAAAATGA+TGG | 0.581978 | 4_2:-41581238 | Msa0600420:exon |
| GGTGAGGATGCTCTTAAGGA+AGG | 0.584094 | 4_2:-41583897 | Msa0600420:CDS |
| CAGCAAAGGTTCTAAATCTG+GGG | 0.584886 | 4_2:-41582360 | Msa0600420:CDS |
| GGAAGAAGGGTCTAGAAGAG+TGG | 0.586941 | 4_2:+41585302 | None:intergenic |
| AGATGTGGTTCATCCTCTCA+AGG | 0.587250 | 4_2:-41583677 | Msa0600420:CDS |
| TATACATGCAGATTCATACA+AGG | 0.587937 | 4_2:-41581567 | Msa0600420:intron |
| TATGCCTGGTGGGGCACAGA+GGG | 0.589588 | 4_2:-41581276 | Msa0600420:CDS |
| GTGGTGGTAGTAGCCGAGGA+CGG | 0.590849 | 4_2:-41583717 | Msa0600420:CDS |
| AGAAGATGTCAAATGGGTCA+TGG | 0.591968 | 4_2:+41583850 | None:intergenic |
| TCTCTCACCGAGGCTTTGTG+TGG | 0.591985 | 4_2:-41581889 | Msa0600420:CDS |
| ATGAAATGTGCTGGTTGTCA+AGG | 0.596299 | 4_2:-41582332 | Msa0600420:CDS |
| ACTGCTTCATCAGCTTCACC+AGG | 0.599026 | 4_2:+41582101 | None:intergenic |
| GACGAGGATGATGATATGCC+TGG | 0.603076 | 4_2:-41581290 | Msa0600420:CDS |
| GGTGGTGGTGGTAGTAGCCG+AGG | 0.603379 | 4_2:-41583721 | Msa0600420:CDS |
| GCAGAGACGTGGAGAAGATG+TGG | 0.607136 | 4_2:-41583692 | Msa0600420:CDS |
| CATGGAGATCGATGAGTGCG+AGG | 0.609688 | 4_2:-41581387 | Msa0600420:CDS |
| CAAGGGTGGTGATCCCGAGA+AGG | 0.610595 | 4_2:-41584957 | Msa0600420:intron |
| TACCAGAGGCCATTTATGAA+GGG | 0.613207 | 4_2:-41581518 | Msa0600420:CDS |
| CTGATCAAGACTTAGAGTGT+CGG | 0.613726 | 4_2:+41581463 | None:intergenic |
| ATGAATGAGAGAAAGAGAAG+TGG | 0.614360 | 4_2:+41585189 | None:intergenic |
| CGAGGACGGAGGCAGAGACG+TGG | 0.614603 | 4_2:-41583703 | Msa0600420:CDS |
| GACCGCTGTCCACAGTGCAA+GGG | 0.616803 | 4_2:-41582203 | Msa0600420:CDS |
| TTCATCACAATTGACAGACA+TGG | 0.617149 | 4_2:-41581405 | Msa0600420:CDS |
| CTCCCTTGCACTGTGGACAG+CGG | 0.620041 | 4_2:+41582201 | None:intergenic |
| GCTCTTAAGGAAGGAATGGG+TGG | 0.621909 | 4_2:-41583888 | Msa0600420:CDS |
| TTGGAAACCACACAAAGCCT+CGG | 0.623021 | 4_2:+41581882 | None:intergenic |
| AAAGCTTCTTAGATGTCCCA+AGG | 0.634241 | 4_2:+41583635 | None:intergenic |
| TATTAAGAATCATCCTGACA+AGG | 0.635554 | 4_2:-41584975 | Msa0600420:CDS |
| AGGATGATGATATGCCTGGT+GGG | 0.636687 | 4_2:-41581286 | Msa0600420:CDS |
| TGGTTGGATTAAGAGTGAGA+TGG | 0.649947 | 4_2:+41585240 | None:intergenic |
| TCTTGTGCTCAAAGTGCAGT+GGG | 0.652317 | 4_2:-41583597 | Msa0600420:intron |
| TCCTCCAAAGAGACCTTGAG+AGG | 0.655831 | 4_2:+41583664 | None:intergenic |
| TACAAGGCTATTAACGACGA+GGG | 0.661646 | 4_2:-41581551 | Msa0600420:CDS |
| AGGGAATGCCGATGTACCAG+AGG | 0.663735 | 4_2:-41581532 | Msa0600420:CDS |
| GTGGTAGTAGCCGAGGACGG+AGG | 0.663999 | 4_2:-41583714 | Msa0600420:CDS |
| ATTAAGAATCATCCTGACAA+GGG | 0.664454 | 4_2:-41584974 | Msa0600420:CDS |
| GTCTTGTGCTCAAAGTGCAG+TGG | 0.666176 | 4_2:-41583598 | Msa0600420:CDS |
| CATCCTTGTAACGAATGTAA+GGG | 0.667371 | 4_2:-41582251 | Msa0600420:CDS |
| AAGAATCATCCTGACAAGGG+TGG | 0.668967 | 4_2:-41584971 | Msa0600420:CDS |
| GCAGCCAGACACAGTTACTG+GGG | 0.674307 | 4_2:-41581992 | Msa0600420:intron |
| GGATGATGATATGCCTGGTG+GGG | 0.675094 | 4_2:-41581285 | Msa0600420:CDS |
| GATTTACGATACATATGGTG+AGG | 0.676516 | 4_2:-41583913 | Msa0600420:CDS |
| CTTCTTATCAAATCGAACCC+CGG | 0.678657 | 4_2:-41581829 | Msa0600420:CDS |
| ACCTTCTCTCCCTTGCACTG+TGG | 0.679545 | 4_2:+41582194 | None:intergenic |
| GCTTTACATTCACTTCACTG+TGG | 0.688048 | 4_2:-41581492 | Msa0600420:CDS |
| CCAAGAAAAGTGATAGTACG+AGG | 0.691322 | 4_2:-41585069 | Msa0600420:CDS |
| GATCAAGACTTAGAGTGTCG+GGG | 0.692079 | 4_2:+41581465 | None:intergenic |
| GCTGAATCATTGATGGACCA+AGG | 0.692801 | 4_2:+41582282 | None:intergenic |
| CTGCTTCATCAGCTTCACCA+GGG | 0.698728 | 4_2:+41582102 | None:intergenic |
| ATATGCCTGGTGGGGCACAG+AGG | 0.713014 | 4_2:-41581277 | Msa0600420:CDS |
| GAGGATGATGATATGCCTGG+TGG | 0.714325 | 4_2:-41581287 | Msa0600420:CDS |
| CAGGCTTGACAACTTCTCCG+GGG | 0.727309 | 4_2:+41581812 | None:intergenic |
| ATACAAGGCTATTAACGACG+AGG | 0.731476 | 4_2:-41581552 | Msa0600420:CDS |
| ACAACAGGAAGCATATGACG+AGG | 0.762396 | 4_2:-41581306 | Msa0600420:CDS |
| GCACACACTGTCTCTCACCG+AGG | 0.788370 | 4_2:-41581899 | Msa0600420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTGAAGA+TGG | - | chr4_2:41583720-41583739 | Msa0600420:CDS | 10.0% |
| !!! | TTTGAGTTTGATTTAAATTT+TGG | - | chr4_2:41581419-41581438 | Msa0600420:CDS | 15.0% |
| !!! | TTAAGCTTAATTTTTTTTTG+TGG | - | chr4_2:41582230-41582249 | Msa0600420:CDS | 15.0% |
| !!! | TAAGCTTAATTTTTTTTTGT+GGG | - | chr4_2:41582231-41582250 | Msa0600420:CDS | 15.0% |
| !!! | ATTATAAGCAAGATATTTTT+TGG | - | chr4_2:41583779-41583798 | Msa0600420:intron | 15.0% |
| !!! | AAAAGATTTGTAATTTTTTG+TGG | - | chr4_2:41584633-41584652 | Msa0600420:intron | 15.0% |
| !!! | CATATTATACTAGAAAGTTT+TGG | - | chr4_2:41581445-41581464 | Msa0600420:CDS | 20.0% |
| !!! | AGGATTTGTAGAATTTTTTT+AGG | - | chr4_2:41581490-41581509 | Msa0600420:CDS | 20.0% |
| !!! | TGCAACTTTATTTTATCTTT+TGG | + | chr4_2:41581967-41581986 | None:intergenic | 20.0% |
| !! | CTTTCATATGCTATATATAT+TGG | - | chr4_2:41582017-41582036 | Msa0600420:intron | 20.0% |
| !! | TCTAATAAGTCAATCATAAA+AGG | - | chr4_2:41582149-41582168 | Msa0600420:CDS | 20.0% |
| !! | TTTATGGTTTGATTATCTAA+AGG | - | chr4_2:41582457-41582476 | Msa0600420:intron | 20.0% |
| !!! | TTTTGCCAGTTAATTTTTTA+TGG | - | chr4_2:41582717-41582736 | Msa0600420:intron | 20.0% |
| !! | TTCATCCATAAAAAATTAAC+TGG | + | chr4_2:41582725-41582744 | None:intergenic | 20.0% |
| !!! | TTTGTATTTTGATACATTCT+AGG | + | chr4_2:41582781-41582800 | None:intergenic | 20.0% |
| !! | TTACAAACAAAAAGACATTT+GGG | + | chr4_2:41582809-41582828 | None:intergenic | 20.0% |
| !! | TTTACAAACAAAAAGACATT+TGG | + | chr4_2:41582810-41582829 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTGTAAACACATT+TGG | - | chr4_2:41582816-41582835 | Msa0600420:intron | 20.0% |
| !! | TCATATATCAAGTGTAAATT+TGG | + | chr4_2:41583126-41583145 | None:intergenic | 20.0% |
| !! | ATAACTATAACAAATCAGAT+GGG | + | chr4_2:41583157-41583176 | None:intergenic | 20.0% |
| !! | AAAAATAAGAAAATGTGAGA+TGG | + | chr4_2:41583496-41583515 | None:intergenic | 20.0% |
| !!! | TGTTTACCCAATTTTTTATT+AGG | - | chr4_2:41583681-41583700 | Msa0600420:CDS | 20.0% |
| !! | TTATAATTGAACTAGATTGT+TGG | + | chr4_2:41583766-41583785 | None:intergenic | 20.0% |
| !! | ATAGAAACTAATGTAAGTAA+AGG | + | chr4_2:41583834-41583853 | None:intergenic | 20.0% |
| !! | TTTGTAATTATTTACAGCAA+AGG | - | chr4_2:41583853-41583872 | Msa0600420:CDS | 20.0% |
| !! | TTTCTATATTTATTGTCGAT+GGG | - | chr4_2:41585110-41585129 | Msa0600420:five_prime_UTR | 20.0% |
| !!! | CCAAAACATATTAAGTATTT+TGG | + | chr4_2:41585155-41585174 | None:intergenic | 20.0% |
| !!! | CCAAAATACTTAATATGTTT+TGG | - | chr4_2:41585152-41585171 | Msa0600420:five_prime_UTR | 20.0% |
| ! | TAAAAGAAAACAAACCTTCT+CGG | + | chr4_2:41581287-41581306 | None:intergenic | 25.0% |
| !!! | AAAGTTTTGGTGATTGATTT+AGG | - | chr4_2:41581458-41581477 | Msa0600420:CDS | 25.0% |
| !!! | AAGTTTTGGTGATTGATTTA+GGG | - | chr4_2:41581459-41581478 | Msa0600420:CDS | 25.0% |
| ! | TCACGAATTATCAAAAGAAA+CGG | + | chr4_2:41581535-41581554 | None:intergenic | 25.0% |
| ! | TGATTGTTCAGAAATTTGAT+TGG | - | chr4_2:41581552-41581571 | Msa0600420:CDS | 25.0% |
| ! | CAAAAATAAGACAATCCAAA+CGG | + | chr4_2:41581739-41581758 | None:intergenic | 25.0% |
| !!! | ATTTTTGAGCTTATGCAAAA+CGG | - | chr4_2:41581752-41581771 | Msa0600420:intron | 25.0% |
| !! | TATCTTTTGGTATAGACATA+GGG | + | chr4_2:41581954-41581973 | None:intergenic | 25.0% |
| !! | TTATCTTTTGGTATAGACAT+AGG | + | chr4_2:41581955-41581974 | None:intergenic | 25.0% |
| !!! | GACATATTTTAAGTAGGTTT+CGG | + | chr4_2:41582061-41582080 | None:intergenic | 25.0% |
| !!! | GCTTATGACATATTTTAAGT+AGG | + | chr4_2:41582067-41582086 | None:intergenic | 25.0% |
| !! | TTTACGCGTTTTTATTGAAT+TGG | - | chr4_2:41582202-41582221 | Msa0600420:CDS | 25.0% |
| !!! | TCCTATTGTGTTATTTAGTT+TGG | - | chr4_2:41582420-41582439 | Msa0600420:intron | 25.0% |
| ! | ACCAAACTAAATAACACAAT+AGG | + | chr4_2:41582424-41582443 | None:intergenic | 25.0% |
| !! | GGTCTTAATCTATTTCTTTA+TGG | - | chr4_2:41582441-41582460 | Msa0600420:intron | 25.0% |
| ! | CATAACTATAACAAATCAGA+TGG | + | chr4_2:41583158-41583177 | None:intergenic | 25.0% |
| ! | AAAAAAAAATACTCCAACAC+TGG | + | chr4_2:41583230-41583249 | None:intergenic | 25.0% |
| !!! | TTTTTGCACTGATTTTGTTT+TGG | - | chr4_2:41583248-41583267 | Msa0600420:intron | 25.0% |
| !! | TTGTTTTCTTGTTGAAGATT+CGG | - | chr4_2:41583290-41583309 | Msa0600420:intron | 25.0% |
| !! | TGTTCAGTTGGTTAAATTTT+GGG | + | chr4_2:41583536-41583555 | None:intergenic | 25.0% |
| !! | TGTGTATTTTGTCAGTAATT+TGG | + | chr4_2:41583571-41583590 | None:intergenic | 25.0% |
| ! | TACTGACAAAATACACATTT+AGG | - | chr4_2:41583574-41583593 | Msa0600420:intron | 25.0% |
| ! | ACAGAGCCTAATAAAAAATT+GGG | + | chr4_2:41583690-41583709 | None:intergenic | 25.0% |
| ! | AACAGAGCCTAATAAAAAAT+TGG | + | chr4_2:41583691-41583710 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGAAGATGGTGTT+TGG | - | chr4_2:41583727-41583746 | Msa0600420:CDS | 25.0% |
| ! | TGCATAAATGTTTCTCAATT+CGG | - | chr4_2:41583803-41583822 | Msa0600420:intron | 25.0% |
| ! | ATGTCAATGTTACTAAGTAA+GGG | + | chr4_2:41584161-41584180 | None:intergenic | 25.0% |
| ! | AATGTCAATGTTACTAAGTA+AGG | + | chr4_2:41584162-41584181 | None:intergenic | 25.0% |
| ! | ATTCTAATCAGAAAGCAAAA+CGG | + | chr4_2:41584475-41584494 | None:intergenic | 25.0% |
| ! | CTTTCTATATTTATTGTCGA+TGG | - | chr4_2:41585109-41585128 | Msa0600420:five_prime_UTR | 25.0% |
| ! | CTTTACAATTGAAATCCATA+TGG | + | chr4_2:41585229-41585248 | None:intergenic | 25.0% |
| TTCTCTTTCTCTCATTCATT+CGG | - | chr4_2:41581042-41581061 | Msa0600420:three_prime_UTR | 30.0% | |
| TTCTTGTTCTTTGAACTACT+AGG | - | chr4_2:41581087-41581106 | Msa0600420:three_prime_UTR | 30.0% | |
| TCTTGTTCTTTGAACTACTA+GGG | - | chr4_2:41581088-41581107 | Msa0600420:three_prime_UTR | 30.0% | |
| TATTAAGAATCATCCTGACA+AGG | - | chr4_2:41581252-41581271 | Msa0600420:exon | 30.0% | |
| ATTAAGAATCATCCTGACAA+GGG | - | chr4_2:41581253-41581272 | Msa0600420:exon | 30.0% | |
| AAAAGAAAACAAACCTTCTC+GGG | + | chr4_2:41581286-41581305 | None:intergenic | 30.0% | |
| !!! | GAATTTTTTTAGGTGTAGTG+TGG | - | chr4_2:41581500-41581519 | Msa0600420:CDS | 30.0% |
| AACAACAATTGTATCATCGT+AGG | + | chr4_2:41581845-41581864 | None:intergenic | 30.0% | |
| AGTCAATCATAAAAGGTTCA+TGG | - | chr4_2:41582156-41582175 | Msa0600420:CDS | 30.0% | |
| !!! | GATTTTTGACTTGTATGAAC+AGG | - | chr4_2:41582479-41582498 | Msa0600420:intron | 30.0% |
| GCTAATGTATCTATGGAATT+GGG | + | chr4_2:41582919-41582938 | None:intergenic | 30.0% | |
| AGCTAATGTATCTATGGAAT+TGG | + | chr4_2:41582920-41582939 | None:intergenic | 30.0% | |
| GAAAAGAGCTAATGTATCTA+TGG | + | chr4_2:41582926-41582945 | None:intergenic | 30.0% | |
| ! | TTGTTGTTGTTGTTGTTGTT+GGG | + | chr4_2:41582948-41582967 | None:intergenic | 30.0% |
| ! | TTTCTTTTCATCCCTTCAAA+TGG | - | chr4_2:41583065-41583084 | Msa0600420:intron | 30.0% |
| !! | ATGCACACTTCTATTTTTCA+TGG | - | chr4_2:41583175-41583194 | Msa0600420:intron | 30.0% |
| ! | TATGTTTTCCTTCACAAAGA+AGG | - | chr4_2:41583360-41583379 | Msa0600420:intron | 30.0% |
| ! | GATCTCTGTTTTCAGAAATA+TGG | - | chr4_2:41583382-41583401 | Msa0600420:intron | 30.0% |
| TATGGTAGATTTGTGTGATT+AGG | - | chr4_2:41583400-41583419 | Msa0600420:intron | 30.0% | |
| ! | GTGTTCAGTTGGTTAAATTT+TGG | + | chr4_2:41583537-41583556 | None:intergenic | 30.0% |
| TTCGATACATTCAGATTTGA+AGG | - | chr4_2:41583609-41583628 | Msa0600420:CDS | 30.0% | |
| ATGTGATTCATTTACATACC+AGG | + | chr4_2:41584437-41584456 | None:intergenic | 30.0% | |
| CTATTCGACAATACTATATC+TGG | + | chr4_2:41584522-41584541 | None:intergenic | 30.0% | |
| TATACATGCAGATTCATACA+AGG | - | chr4_2:41584660-41584679 | Msa0600420:intron | 30.0% | |
| TACACTTCATGATGTCAATA+TGG | - | chr4_2:41584867-41584886 | Msa0600420:intron | 30.0% | |
| AGTAGAATCAGACAAAATGA+TGG | - | chr4_2:41584989-41585008 | Msa0600420:CDS | 30.0% | |
| !!! | CTGTTTTTTAACCATAGTGT+TGG | - | chr4_2:41585031-41585050 | Msa0600420:CDS | 30.0% |
| !! | AAGTATTTTGGATGTCAGAA+TGG | + | chr4_2:41585143-41585162 | None:intergenic | 30.0% |
| ! | ATCGTGCATGTTAAGTATTT+TGG | + | chr4_2:41585196-41585215 | None:intergenic | 30.0% |
| TTTCAATTGTAAAGACTGAC+TGG | - | chr4_2:41585235-41585254 | Msa0600420:five_prime_UTR | 30.0% | |
| ! | ATTTTCCTCTTGAACAGAAA+AGG | + | chr4_2:41585279-41585298 | None:intergenic | 30.0% |
| TTTCTGTTCAAGAGGAAAAT+CGG | - | chr4_2:41585279-41585298 | Msa0600420:five_prime_UTR | 30.0% | |
| ATGAATGAGAGAAAGAGAAG+TGG | + | chr4_2:41581041-41581060 | None:intergenic | 35.0% | |
| !!! | GTTTTGTTTCGATCTGTACA+AGG | - | chr4_2:41581114-41581133 | Msa0600420:three_prime_UTR | 35.0% |
| CTGTACAAGGATAAGATGTT+TGG | - | chr4_2:41581127-41581146 | Msa0600420:three_prime_UTR | 35.0% | |
| !! | CTCGTACTATCACTTTTCTT+GGG | + | chr4_2:41581160-41581179 | None:intergenic | 35.0% |
| ! | ACGAGGTACTATGAAATCTT+AGG | - | chr4_2:41581175-41581194 | Msa0600420:three_prime_UTR | 35.0% |
| TGTATCAAAAACTGCTTCTC+AGG | - | chr4_2:41581198-41581217 | Msa0600420:three_prime_UTR | 35.0% | |
| ! | TTGGTGATTGATTTAGGGTT+AGG | - | chr4_2:41581464-41581483 | Msa0600420:CDS | 35.0% |
| ! | TGGTGATTGATTTAGGGTTA+GGG | - | chr4_2:41581465-41581484 | Msa0600420:CDS | 35.0% |
| ! | ATTGATTTAGGGTTAGGGTT+AGG | - | chr4_2:41581470-41581489 | Msa0600420:CDS | 35.0% |
| CATGAAGGAAACAAAAAACG+AGG | + | chr4_2:41581598-41581617 | None:intergenic | 35.0% | |
| !!! | CTCGTTTTTTGTTTCCTTCA+TGG | - | chr4_2:41581596-41581615 | Msa0600420:intron | 35.0% |
| ATGATCAAATTACGCCATGA+AGG | + | chr4_2:41581613-41581632 | None:intergenic | 35.0% | |
| TTATCCCATTCCTACTAAGT+CGG | + | chr4_2:41581645-41581664 | None:intergenic | 35.0% | |
| AAGCGCTTATGTATAAGCTA+TGG | - | chr4_2:41581711-41581730 | Msa0600420:intron | 35.0% | |
| AGCGCTTATGTATAAGCTAT+GGG | - | chr4_2:41581712-41581731 | Msa0600420:intron | 35.0% | |
| TATTGTTCATAAGCCTGTCA+AGG | - | chr4_2:41581801-41581820 | Msa0600420:intron | 35.0% | |
| TTCTCATAAACTACCTTGAC+AGG | + | chr4_2:41581817-41581836 | None:intergenic | 35.0% | |
| !! | TTCATGGTGTTGTTATTGTG+AGG | - | chr4_2:41582172-41582191 | Msa0600420:CDS | 35.0% |
| CGTGAGATTTACGATACATA+TGG | - | chr4_2:41582309-41582328 | Msa0600420:CDS | 35.0% | |
| GATTTACGATACATATGGTG+AGG | - | chr4_2:41582314-41582333 | Msa0600420:CDS | 35.0% | |
| AAGACGAGAAGATGTCAAAT+GGG | + | chr4_2:41582386-41582405 | None:intergenic | 35.0% | |
| AAAGACGAGAAGATGTCAAA+TGG | + | chr4_2:41582387-41582406 | None:intergenic | 35.0% | |
| !!! | TTTTGACTTGTATGAACAGG+TGG | - | chr4_2:41582482-41582501 | Msa0600420:intron | 35.0% |
| !!! | GTATCGTAAGAGTTTTGGTT+TGG | - | chr4_2:41582656-41582675 | Msa0600420:intron | 35.0% |
| ! | ATGAAATGATAGTGAGTGTG+AGG | - | chr4_2:41582740-41582759 | Msa0600420:intron | 35.0% |
| ! | TTGTAAACACATTTGGTGAC+TGG | - | chr4_2:41582823-41582842 | Msa0600420:intron | 35.0% |
| ! | TGTAAACACATTTGGTGACT+GGG | - | chr4_2:41582824-41582843 | Msa0600420:intron | 35.0% |
| !! | CTTGTTGTTGTTGTTGTTGT+TGG | + | chr4_2:41582949-41582968 | None:intergenic | 35.0% |
| CAACAACAACAACAACAAGA+AGG | - | chr4_2:41582950-41582969 | Msa0600420:intron | 35.0% | |
| TTCATCCCTTCAAATGGAAT+TGG | - | chr4_2:41583071-41583090 | Msa0600420:intron | 35.0% | |
| TCATCCCTTCAAATGGAATT+GGG | - | chr4_2:41583072-41583091 | Msa0600420:intron | 35.0% | |
| AAACCCCAATTCCATTTGAA+GGG | + | chr4_2:41583079-41583098 | None:intergenic | 35.0% | |
| AAAACCCCAATTCCATTTGA+AGG | + | chr4_2:41583080-41583099 | None:intergenic | 35.0% | |
| TAACAAATCAGATGGGTGTA+AGG | + | chr4_2:41583150-41583169 | None:intergenic | 35.0% | |
| ! | CTTCTTTTTCTTTCCAGTGT+TGG | - | chr4_2:41583214-41583233 | Msa0600420:intron | 35.0% |
| !!! | TGCACTGATTTTGTTTTGGA+CGG | - | chr4_2:41583252-41583271 | Msa0600420:intron | 35.0% |
| ACAAAAAAACTCAGCATCTG+TGG | + | chr4_2:41583455-41583474 | None:intergenic | 35.0% | |
| GTGAGATGGAATTAGTAGAA+TGG | + | chr4_2:41583482-41583501 | None:intergenic | 35.0% | |
| TCATCAAATGTGTGTTCAGT+TGG | + | chr4_2:41583548-41583567 | None:intergenic | 35.0% | |
| !! | TACAGCAAAGGTTCTAAATC+TGG | - | chr4_2:41583865-41583884 | Msa0600420:CDS | 35.0% |
| !! | ACAGCAAAGGTTCTAAATCT+GGG | - | chr4_2:41583866-41583885 | Msa0600420:CDS | 35.0% |
| AAGGTTTCTATTAGACACCT+TGG | - | chr4_2:41583928-41583947 | Msa0600420:CDS | 35.0% | |
| ! | TGCATTTGCTGAATCATTGA+TGG | + | chr4_2:41583955-41583974 | None:intergenic | 35.0% |
| CATCCTTGTAACGAATGTAA+GGG | - | chr4_2:41583976-41583995 | Msa0600420:intron | 35.0% | |
| ! | TCGCTCTTTCTTTTGAACTT+GGG | + | chr4_2:41584293-41584312 | None:intergenic | 35.0% |
| ! | TTCGCTCTTTCTTTTGAACT+TGG | + | chr4_2:41584294-41584313 | None:intergenic | 35.0% |
| ! | GGTTCGATTTGATAAGAAGT+TGG | + | chr4_2:41584397-41584416 | None:intergenic | 35.0% |
| TAATCAGAAAGCAAAACGGA+GGG | + | chr4_2:41584471-41584490 | None:intergenic | 35.0% | |
| ACTATAGCAATGTAGCATAG+TGG | - | chr4_2:41584555-41584574 | Msa0600420:intron | 35.0% | |
| TAAAGCTTGCCCTTCATAAA+TGG | + | chr4_2:41584721-41584740 | None:intergenic | 35.0% | |
| AATTGTGATGAAGGTTTAGC+TGG | + | chr4_2:41584814-41584833 | None:intergenic | 35.0% | |
| ATGTCTGTCAATTGTGATGA+AGG | + | chr4_2:41584823-41584842 | None:intergenic | 35.0% | |
| TTCATCACAATTGACAGACA+TGG | - | chr4_2:41584822-41584841 | Msa0600420:intron | 35.0% | |
| TCATGATGTCAATATGGAAG+AGG | - | chr4_2:41584873-41584892 | Msa0600420:intron | 35.0% | |
| TCAATATGGAAGAGGAGAAT+AGG | - | chr4_2:41584881-41584900 | Msa0600420:intron | 35.0% | |
| ! | TTTTGTCTGATTCTACTGCT+GGG | + | chr4_2:41584986-41585005 | None:intergenic | 35.0% |
| ! | ATTTTGTCTGATTCTACTGC+TGG | + | chr4_2:41584987-41585006 | None:intergenic | 35.0% |
| CATTGAACCAAACACTACAT+AGG | + | chr4_2:41585063-41585082 | None:intergenic | 35.0% | |
| ! | CTATGTAGTGTTTGGTTCAA+TGG | - | chr4_2:41585061-41585080 | Msa0600420:CDS | 35.0% |
| ACGATTGCTAAGAAACCATA+TGG | - | chr4_2:41585211-41585230 | Msa0600420:five_prime_UTR | 35.0% | |
| CTCTTGAACAGAAAAGGTTA+AGG | + | chr4_2:41585273-41585292 | None:intergenic | 35.0% | |
| ! | CTTAACCTTTTCTGTTCAAG+AGG | - | chr4_2:41585271-41585290 | Msa0600420:five_prime_UTR | 35.0% |
| TTCTGTTCAAGAGGAAAATC+GGG | - | chr4_2:41585280-41585299 | Msa0600420:five_prime_UTR | 35.0% | |
| ! | TGGGATTGTGTGTGAGTTTT+GGG | + | chr4_2:41580957-41580976 | None:intergenic | 40.0% |
| ! | TTGGGATTGTGTGTGAGTTT+TGG | + | chr4_2:41580958-41580977 | None:intergenic | 40.0% |
| TAAGAGTGAGATGGAATGGA+TGG | + | chr4_2:41580981-41581000 | None:intergenic | 40.0% | |
| GGATTAAGAGTGAGATGGAA+TGG | + | chr4_2:41580985-41581004 | None:intergenic | 40.0% | |
| TGGTTGGATTAAGAGTGAGA+TGG | + | chr4_2:41580990-41581009 | None:intergenic | 40.0% | |
| !! | GCGAAGTTTGTTATAGTGGT+TGG | + | chr4_2:41581006-41581025 | None:intergenic | 40.0% |
| !! | ACACGCGAAGTTTGTTATAG+TGG | + | chr4_2:41581010-41581029 | None:intergenic | 40.0% |
| !! | CCTCGTACTATCACTTTTCT+TGG | + | chr4_2:41581161-41581180 | None:intergenic | 40.0% |
| CCAAGAAAAGTGATAGTACG+AGG | - | chr4_2:41581158-41581177 | Msa0600420:three_prime_UTR | 40.0% | |
| GCGTAATTTGATCATGTAGC+CGG | - | chr4_2:41581618-41581637 | Msa0600420:intron | 40.0% | |
| TATCCCATTCCTACTAAGTC+GGG | + | chr4_2:41581644-41581663 | None:intergenic | 40.0% | |
| AGACTGTTTCGGAGAACTTA+AGG | + | chr4_2:41582095-41582114 | None:intergenic | 40.0% | |
| AAGCACTTGTGAGACTGTTT+CGG | + | chr4_2:41582106-41582125 | None:intergenic | 40.0% | |
| ATATGGTGAGGATGCTCTTA+AGG | - | chr4_2:41582326-41582345 | Msa0600420:CDS | 40.0% | |
| GATGCTCTTAAGGAAGGAAT+GGG | - | chr4_2:41582336-41582355 | Msa0600420:CDS | 40.0% | |
| AGAAGATGTCAAATGGGTCA+TGG | + | chr4_2:41582380-41582399 | None:intergenic | 40.0% | |
| GACATCTTCTCGTCTTTCTT+TGG | - | chr4_2:41582390-41582409 | Msa0600420:intron | 40.0% | |
| TCTTAGATGTCCCAAGGTAA+AGG | + | chr4_2:41582589-41582608 | None:intergenic | 40.0% | |
| AAAGCTTCTTAGATGTCCCA+AGG | + | chr4_2:41582595-41582614 | None:intergenic | 40.0% | |
| !! | GGTAGGTATCGTAAGAGTTT+TGG | - | chr4_2:41582651-41582670 | Msa0600420:intron | 40.0% |
| ! | TTTTGTTGAGCCGAAACTGT+AGG | - | chr4_2:41582856-41582875 | Msa0600420:intron | 40.0% |
| TTTGTTGAGCCGAAACTGTA+GGG | - | chr4_2:41582857-41582876 | Msa0600420:intron | 40.0% | |
| ACAAGAAGGTCAGAACTTGA+AGG | - | chr4_2:41582964-41582983 | Msa0600420:intron | 40.0% | |
| GCAAAACCCTTTGGTGAAAA+GGG | + | chr4_2:41583000-41583019 | None:intergenic | 40.0% | |
| AGCAAAACCCTTTGGTGAAA+AGG | + | chr4_2:41583001-41583020 | None:intergenic | 40.0% | |
| ! | TTCACCAAAGGGTTTTGCTT+TGG | - | chr4_2:41583002-41583021 | Msa0600420:intron | 40.0% |
| GATACCAAAGCAAAACCCTT+TGG | + | chr4_2:41583009-41583028 | None:intergenic | 40.0% | |
| CATCCCTTCAAATGGAATTG+GGG | - | chr4_2:41583073-41583092 | Msa0600420:intron | 40.0% | |
| !!! | GCACTGATTTTGTTTTGGAC+GGG | - | chr4_2:41583253-41583272 | Msa0600420:intron | 40.0% |
| !!! | CACTGATTTTGTTTTGGACG+GGG | - | chr4_2:41583254-41583273 | Msa0600420:intron | 40.0% |
| ACAGAGATCCTTCTTTGTGA+AGG | + | chr4_2:41583371-41583390 | None:intergenic | 40.0% | |
| AGATTTGTGTGATTAGGCAG+CGG | - | chr4_2:41583406-41583425 | Msa0600420:intron | 40.0% | |
| ATCTGTGGATTCCATCTCTA+CGG | + | chr4_2:41583440-41583459 | None:intergenic | 40.0% | |
| TACAGCGCATCACACATTTA+AGG | - | chr4_2:41583640-41583659 | Msa0600420:CDS | 40.0% | |
| !! | CAGCAAAGGTTCTAAATCTG+GGG | - | chr4_2:41583867-41583886 | Msa0600420:CDS | 40.0% |
| TTGACAACCAGCACATTTCA+TGG | + | chr4_2:41583896-41583915 | None:intergenic | 40.0% | |
| !! | ATGAAATGTGCTGGTTGTCA+AGG | - | chr4_2:41583895-41583914 | Msa0600420:CDS | 40.0% |
| TTGTCAAGGAACTGGTATGA+AGG | - | chr4_2:41583909-41583928 | Msa0600420:CDS | 40.0% | |
| GCATCCTTGTAACGAATGTA+AGG | - | chr4_2:41583975-41583994 | Msa0600420:intron | 40.0% | |
| GTACCCTTACATTCGTTACA+AGG | + | chr4_2:41583982-41584001 | None:intergenic | 40.0% | |
| ! | TGTAACGAATGTAAGGGTAC+TGG | - | chr4_2:41583982-41584001 | Msa0600420:intron | 40.0% |
| CTTGAAGTTCATGTCGAGAA+AGG | - | chr4_2:41584075-41584094 | Msa0600420:intron | 40.0% | |
| AGTCAGAAGATTACATTCCC+TGG | - | chr4_2:41584108-41584127 | Msa0600420:intron | 40.0% | |
| ACAGTGTGTGCTCTACAAAA+AGG | + | chr4_2:41584319-41584338 | None:intergenic | 40.0% | |
| CCAAGTGAGTAAGCACAAAT+TGG | + | chr4_2:41584367-41584386 | None:intergenic | 40.0% | |
| CCAATTTGTGCTTACTCACT+TGG | - | chr4_2:41584364-41584383 | Msa0600420:intron | 40.0% | |
| TTTGTGCTTACTCACTTGGA+TGG | - | chr4_2:41584368-41584387 | Msa0600420:intron | 40.0% | |
| CTTCTTATCAAATCGAACCC+CGG | - | chr4_2:41584398-41584417 | Msa0600420:intron | 40.0% | |
| CTAATCAGAAAGCAAAACGG+AGG | + | chr4_2:41584472-41584491 | None:intergenic | 40.0% | |
| ATGTGTTGTCAGTTGAGCAT+TGG | + | chr4_2:41584605-41584624 | None:intergenic | 40.0% | |
| ATACAAGGCTATTAACGACG+AGG | - | chr4_2:41584675-41584694 | Msa0600420:intron | 40.0% | |
| TACAAGGCTATTAACGACGA+GGG | - | chr4_2:41584676-41584695 | Msa0600420:intron | 40.0% | |
| ATAAATGGCCTCTGGTACAT+CGG | + | chr4_2:41584706-41584725 | None:intergenic | 40.0% | |
| TACCAGAGGCCATTTATGAA+GGG | - | chr4_2:41584709-41584728 | Msa0600420:intron | 40.0% | |
| GCTTTACATTCACTTCACTG+TGG | - | chr4_2:41584735-41584754 | Msa0600420:intron | 40.0% | |
| ! | TGATCAAGACTTAGAGTGTC+GGG | + | chr4_2:41584766-41584785 | None:intergenic | 40.0% |
| CTGATCAAGACTTAGAGTGT+CGG | + | chr4_2:41584767-41584786 | None:intergenic | 40.0% | |
| CTAAGTCTTGATCAGGTGAA+AGG | - | chr4_2:41584772-41584791 | Msa0600420:intron | 40.0% | |
| ATATGGAAGAGGAGAATAGG+AGG | - | chr4_2:41584884-41584903 | Msa0600420:intron | 40.0% | |
| ATAGGTTCTGTCCAACACTA+TGG | + | chr4_2:41585045-41585064 | None:intergenic | 40.0% | |
| GACAGAACCTATGTAGTGTT+TGG | - | chr4_2:41585053-41585072 | Msa0600420:CDS | 40.0% | |
| GTCTAGAAGAGTGGGAAGTA+CGG | + | chr4_2:41580919-41580938 | None:intergenic | 45.0% | |
| GAAGAAGGGTCTAGAAGAGT+GGG | + | chr4_2:41580927-41580946 | None:intergenic | 45.0% | |
| GTGAGATGGAATGGATGGTT+GGG | + | chr4_2:41580976-41580995 | None:intergenic | 45.0% | |
| AGTGAGATGGAATGGATGGT+TGG | + | chr4_2:41580977-41580996 | None:intergenic | 45.0% | |
| AAGAATCATCCTGACAAGGG+TGG | - | chr4_2:41581256-41581275 | Msa0600420:CDS | 45.0% | |
| GTATAAGCTATGGGTCCGTT+TGG | - | chr4_2:41581721-41581740 | Msa0600420:intron | 45.0% | |
| GTATAGACATAGGGCTCGTT+TGG | + | chr4_2:41581945-41581964 | None:intergenic | 45.0% | |
| AGAGCTAGCACAAGCTTATG+AGG | - | chr4_2:41582266-41582285 | Msa0600420:CDS | 45.0% | |
| TCGTAAATCTCACGCTTCTC+AGG | + | chr4_2:41582303-41582322 | None:intergenic | 45.0% | |
| GGATGCTCTTAAGGAAGGAA+TGG | - | chr4_2:41582335-41582354 | Msa0600420:CDS | 45.0% | |
| ! | TGACTTGTATGAACAGGTGG+TGG | - | chr4_2:41582485-41582504 | Msa0600420:intron | 45.0% |
| AGATGTGGTTCATCCTCTCA+AGG | - | chr4_2:41582550-41582569 | Msa0600420:intron | 45.0% | |
| TCATCCTCTCAAGGTCTCTT+TGG | - | chr4_2:41582559-41582578 | Msa0600420:intron | 45.0% | |
| ! | TCTTTGGAGGACCTTTACCT+TGG | - | chr4_2:41582575-41582594 | Msa0600420:intron | 45.0% |
| ! | CTTTGGAGGACCTTTACCTT+GGG | - | chr4_2:41582576-41582595 | Msa0600420:intron | 45.0% |
| TCTTGTGCTCAAAGTGCAGT+GGG | - | chr4_2:41582630-41582649 | Msa0600420:intron | 45.0% | |
| CAATCACTGCCCTACAGTTT+CGG | + | chr4_2:41582869-41582888 | None:intergenic | 45.0% | |
| GGCAGTGATTGAAATGAGAG+AGG | - | chr4_2:41582878-41582897 | Msa0600420:intron | 45.0% | |
| AAATGAGAGAGGCCTTGAGT+GGG | - | chr4_2:41582889-41582908 | Msa0600420:intron | 45.0% | |
| GAATTGGGTATTCCCACTCA+AGG | + | chr4_2:41582904-41582923 | None:intergenic | 45.0% | |
| ! | GGGTTTTGCTTTGGTATCTC+AGG | - | chr4_2:41583011-41583030 | Msa0600420:intron | 45.0% |
| !!! | GGTTTTTTTCCCCACAGTGA+CGG | - | chr4_2:41583094-41583113 | Msa0600420:intron | 45.0% |
| TTGGAAAGATCCGTCACTGT+GGG | + | chr4_2:41583107-41583126 | None:intergenic | 45.0% | |
| TTTGGAAAGATCCGTCACTG+TGG | + | chr4_2:41583108-41583127 | None:intergenic | 45.0% | |
| ATTCCATCTCTACGGTTGTC+TGG | + | chr4_2:41583432-41583451 | None:intergenic | 45.0% | |
| ! | GCTGAATCATTGATGGACCA+AGG | + | chr4_2:41583948-41583967 | None:intergenic | 45.0% |
| ATATCCCCAGTAACTGTGTC+TGG | + | chr4_2:41584242-41584261 | None:intergenic | 45.0% | |
| TTGGAAACCACACAAAGCCT+CGG | + | chr4_2:41584348-41584367 | None:intergenic | 45.0% | |
| GTACCAGAGGCCATTTATGA+AGG | - | chr4_2:41584708-41584727 | Msa0600420:intron | 45.0% | |
| !! | GATCAAGACTTAGAGTGTCG+GGG | + | chr4_2:41584765-41584784 | None:intergenic | 45.0% |
| CGACACTCTAAGTCTTGATC+AGG | - | chr4_2:41584765-41584784 | Msa0600420:intron | 45.0% | |
| TGATCAGGTGAAAGGTTTGC+AGG | - | chr4_2:41584780-41584799 | Msa0600420:intron | 45.0% | |
| GAAACAGCAGCAACAACAAC+AGG | - | chr4_2:41584906-41584925 | Msa0600420:intron | 45.0% | |
| ! | ACAACAGGAAGCATATGACG+AGG | - | chr4_2:41584921-41584940 | Msa0600420:intron | 45.0% |
| AGGATGATGATATGCCTGGT+GGG | - | chr4_2:41584941-41584960 | Msa0600420:intron | 45.0% | |
| GGAAGAAGGGTCTAGAAGAG+TGG | + | chr4_2:41580928-41580947 | None:intergenic | 50.0% | |
| TCTTCTAGACCCTTCTTCCG+TGG | - | chr4_2:41580929-41580948 | Msa0600420:three_prime_UTR | 50.0% | |
| CTTCTAGACCCTTCTTCCGT+GGG | - | chr4_2:41580930-41580949 | Msa0600420:three_prime_UTR | 50.0% | |
| !! | TTTTGGGTCCCACGGAAGAA+GGG | + | chr4_2:41580941-41580960 | None:intergenic | 50.0% |
| !!! | TGTGTGAGTTTTGGGTCCCA+CGG | + | chr4_2:41580949-41580968 | None:intergenic | 50.0% |
| GACATAGGGCTCGTTTGGAT+TGG | + | chr4_2:41581940-41581959 | None:intergenic | 50.0% | |
| GGTGAGGATGCTCTTAAGGA+AGG | - | chr4_2:41582330-41582349 | Msa0600420:CDS | 50.0% | |
| GCTCTTAAGGAAGGAATGGG+TGG | - | chr4_2:41582339-41582358 | Msa0600420:CDS | 50.0% | |
| CTTAAGGAAGGAATGGGTGG+TGG | - | chr4_2:41582342-41582361 | Msa0600420:CDS | 50.0% | |
| ! | CTTGTATGAACAGGTGGTGG+TGG | - | chr4_2:41582488-41582507 | Msa0600420:intron | 50.0% |
| TCCTCTCAAGGTCTCTTTGG+AGG | - | chr4_2:41582562-41582581 | Msa0600420:intron | 50.0% | |
| TCCTCCAAAGAGACCTTGAG+AGG | + | chr4_2:41582566-41582585 | None:intergenic | 50.0% | |
| GTCTTGTGCTCAAAGTGCAG+TGG | - | chr4_2:41582629-41582648 | Msa0600420:intron | 50.0% | |
| GAAATGAGAGAGGCCTTGAG+TGG | - | chr4_2:41582888-41582907 | Msa0600420:intron | 50.0% | |
| ! | CTTTGGTGAAAAGGGTGTGG+CGG | + | chr4_2:41582992-41583011 | None:intergenic | 50.0% |
| ! | GCCACACCCTTTTCACCAAA+GGG | - | chr4_2:41582991-41583010 | Msa0600420:intron | 50.0% |
| ACCCTTTGGTGAAAAGGGTG+TGG | + | chr4_2:41582995-41583014 | None:intergenic | 50.0% | |
| TGGAAAGATCCGTCACTGTG+GGG | + | chr4_2:41583106-41583125 | None:intergenic | 50.0% | |
| !! | TGTGCTGGTTGTCAAGGAAC+TGG | - | chr4_2:41583901-41583920 | Msa0600420:CDS | 50.0% |
| CTGCTTCATCAGCTTCACCA+GGG | + | chr4_2:41584128-41584147 | None:intergenic | 50.0% | |
| ACTGCTTCATCAGCTTCACC+AGG | + | chr4_2:41584129-41584148 | None:intergenic | 50.0% | |
| TTGCAGCCAGACACAGTTAC+TGG | - | chr4_2:41584233-41584252 | Msa0600420:intron | 50.0% | |
| TGCAGCCAGACACAGTTACT+GGG | - | chr4_2:41584234-41584253 | Msa0600420:intron | 50.0% | |
| ACCAGGCTTGACAACTTCTC+CGG | + | chr4_2:41584420-41584439 | None:intergenic | 50.0% | |
| TGCCCTTCATAAATGGCCTC+TGG | + | chr4_2:41584714-41584733 | None:intergenic | 50.0% | |
| GACGAGGATGATGATATGCC+TGG | - | chr4_2:41584937-41584956 | Msa0600420:intron | 50.0% | |
| GAGGATGATGATATGCCTGG+TGG | - | chr4_2:41584940-41584959 | Msa0600420:intron | 50.0% | |
| GGATGATGATATGCCTGGTG+GGG | - | chr4_2:41584942-41584961 | Msa0600420:intron | 50.0% | |
| !! | GTTTTGGGTCCCACGGAAGA+AGG | + | chr4_2:41580942-41580961 | None:intergenic | 55.0% |
| CCATTCCTACTAAGTCGGGC+CGG | + | chr4_2:41581640-41581659 | None:intergenic | 55.0% | |
| CGGCCCGACTTAGTAGGAAT+GGG | - | chr4_2:41581638-41581657 | Msa0600420:intron | 55.0% | |
| ! | AAGGAAGGAATGGGTGGTGG+AGG | - | chr4_2:41582345-41582364 | Msa0600420:CDS | 55.0% |
| !! | GTATGAACAGGTGGTGGTGG+TGG | - | chr4_2:41582491-41582510 | Msa0600420:intron | 55.0% |
| GCAGAGACGTGGAGAAGATG+TGG | - | chr4_2:41582535-41582554 | Msa0600420:intron | 55.0% | |
| GTGCTCAAAGTGCAGTGGGT+AGG | - | chr4_2:41582634-41582653 | Msa0600420:intron | 55.0% | |
| ! | CGCCACACCCTTTTCACCAA+AGG | - | chr4_2:41582990-41583009 | Msa0600420:intron | 55.0% |
| GGGGCTTCCATGAAATGTGC+TGG | - | chr4_2:41583886-41583905 | Msa0600420:CDS | 55.0% | |
| TCCACAGTGCAAGGGAGAGA+AGG | - | chr4_2:41584032-41584051 | Msa0600420:intron | 55.0% | |
| ACCTTCTCTCCCTTGCACTG+TGG | + | chr4_2:41584036-41584055 | None:intergenic | 55.0% | |
| GCAGCCAGACACAGTTACTG+GGG | - | chr4_2:41584235-41584254 | Msa0600420:intron | 55.0% | |
| ! | TCTCTCACCGAGGCTTTGTG+TGG | - | chr4_2:41584338-41584357 | Msa0600420:intron | 55.0% |
| CAGGCTTGACAACTTCTCCG+GGG | + | chr4_2:41584418-41584437 | None:intergenic | 55.0% | |
| CCAGGCTTGACAACTTCTCC+GGG | + | chr4_2:41584419-41584438 | None:intergenic | 55.0% | |
| AGGGAATGCCGATGTACCAG+AGG | - | chr4_2:41584695-41584714 | Msa0600420:intron | 55.0% | |
| CATGGAGATCGATGAGTGCG+AGG | - | chr4_2:41584840-41584859 | Msa0600420:intron | 55.0% | |
| TCGGGATCACCACCCTTGTC+AGG | + | chr4_2:41581268-41581287 | None:intergenic | 60.0% | |
| CAAGGGTGGTGATCCCGAGA+AGG | - | chr4_2:41581270-41581289 | Msa0600420:CDS | 60.0% | |
| TGTAGCCGGCCCGACTTAGT+AGG | - | chr4_2:41581632-41581651 | Msa0600420:intron | 60.0% | |
| CCGGCCCGACTTAGTAGGAA+TGG | - | chr4_2:41581637-41581656 | Msa0600420:intron | 60.0% | |
| !! | GAAGGAATGGGTGGTGGAGG+TGG | - | chr4_2:41582348-41582367 | Msa0600420:CDS | 60.0% |
| !! | TGAACAGGTGGTGGTGGTGG+TGG | - | chr4_2:41582494-41582513 | Msa0600420:intron | 60.0% |
| GTGGTGGTAGTAGCCGAGGA+CGG | - | chr4_2:41582510-41582529 | Msa0600420:intron | 60.0% | |
| CGGCCAGACAACCGTAGAGA+TGG | - | chr4_2:41583426-41583445 | Msa0600420:intron | 60.0% | |
| AGACCGCTGTCCACAGTGCA+AGG | - | chr4_2:41584023-41584042 | Msa0600420:intron | 60.0% | |
| GACCGCTGTCCACAGTGCAA+GGG | - | chr4_2:41584024-41584043 | Msa0600420:intron | 60.0% | |
| CTCCCTTGCACTGTGGACAG+CGG | + | chr4_2:41584029-41584048 | None:intergenic | 60.0% | |
| GCACACACTGTCTCTCACCG+AGG | - | chr4_2:41584328-41584347 | Msa0600420:intron | 60.0% | |
| CCCGGAGAAGTTGTCAAGCC+TGG | - | chr4_2:41584416-41584435 | Msa0600420:intron | 60.0% | |
| ATATGCCTGGTGGGGCACAG+AGG | - | chr4_2:41584950-41584969 | Msa0600420:intron | 60.0% | |
| TATGCCTGGTGGGGCACAGA+GGG | - | chr4_2:41584951-41584970 | Msa0600420:intron | 60.0% | |
| !! | GGAATGGGTGGTGGAGGTGG+TGG | - | chr4_2:41582351-41582370 | Msa0600420:CDS | 65.0% |
| !! | ATGGGTGGTGGAGGTGGTGG+TGG | - | chr4_2:41582354-41582373 | Msa0600420:CDS | 65.0% |
| !! | GGTGGTGGTGGTAGTAGCCG+AGG | - | chr4_2:41582506-41582525 | Msa0600420:intron | 65.0% |
| GTGGTAGTAGCCGAGGACGG+AGG | - | chr4_2:41582513-41582532 | Msa0600420:intron | 65.0% | |
| CACGTCTCTGCCTCCGTCCT+CGG | + | chr4_2:41582526-41582545 | None:intergenic | 65.0% | |
| TGTACCCTCTGTGCCCCACC+AGG | + | chr4_2:41584958-41584977 | None:intergenic | 65.0% | |
| CGAGGACGGAGGCAGAGACG+TGG | - | chr4_2:41582524-41582543 | Msa0600420:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 41580906 | 41585343 | 41580906 | ID=Msa0600420;Name=Msa0600420 |
| chr4_2 | mRNA | 41580906 | 41585343 | 41580906 | ID=Msa0600420-mRNA-1;Parent=Msa0600420;Name=Msa0600420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=236|1|1|1|1|1|6|350|416 |
| chr4_2 | exon | 41580906 | 41581578 | 41580906 | ID=Msa0600420-mRNA-1:exon:9057;Parent=Msa0600420-mRNA-1 |
| chr4_2 | exon | 41581812 | 41582010 | 41581812 | ID=Msa0600420-mRNA-1:exon:9056;Parent=Msa0600420-mRNA-1 |
| chr4_2 | exon | 41582103 | 41582379 | 41582103 | ID=Msa0600420-mRNA-1:exon:9055;Parent=Msa0600420-mRNA-1 |
| chr4_2 | exon | 41583598 | 41583748 | 41583598 | ID=Msa0600420-mRNA-1:exon:9054;Parent=Msa0600420-mRNA-1 |
| chr4_2 | exon | 41583838 | 41583988 | 41583838 | ID=Msa0600420-mRNA-1:exon:9053;Parent=Msa0600420-mRNA-1 |
| chr4_2 | exon | 41584958 | 41585343 | 41584958 | ID=Msa0600420-mRNA-1:exon:9052;Parent=Msa0600420-mRNA-1 |
| chr4_2 | five_prime_UTR | 41585108 | 41585343 | 41585108 | ID=Msa0600420-mRNA-1:five_prime_utr;Parent=Msa0600420-mRNA-1 |
| chr4_2 | CDS | 41584958 | 41585107 | 41584958 | ID=Msa0600420-mRNA-1:cds;Parent=Msa0600420-mRNA-1 |
| chr4_2 | CDS | 41583838 | 41583988 | 41583838 | ID=Msa0600420-mRNA-1:cds;Parent=Msa0600420-mRNA-1 |
| chr4_2 | CDS | 41583598 | 41583748 | 41583598 | ID=Msa0600420-mRNA-1:cds;Parent=Msa0600420-mRNA-1 |
| chr4_2 | CDS | 41582103 | 41582379 | 41582103 | ID=Msa0600420-mRNA-1:cds;Parent=Msa0600420-mRNA-1 |
| chr4_2 | CDS | 41581812 | 41582010 | 41581812 | ID=Msa0600420-mRNA-1:cds;Parent=Msa0600420-mRNA-1 |
| chr4_2 | CDS | 41581256 | 41581578 | 41581256 | ID=Msa0600420-mRNA-1:cds;Parent=Msa0600420-mRNA-1 |
| chr4_2 | three_prime_UTR | 41580906 | 41581255 | 41580906 | ID=Msa0600420-mRNA-1:three_prime_utr;Parent=Msa0600420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
