AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0197650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197650 MtrunA17_Chr2g0290891 100.000 211 0 0 1 211 1 211 5.91e-160 440
Msa0197650 MtrunA17_Chr6g0458081 88.626 211 24 0 1 211 1 211 4.62e-140 390
Msa0197650 MtrunA17_Chr8g0349711 70.561 214 58 2 1 211 1 212 7.03e-110 313
Msa0197650 MtrunA17_Chr8g0349681 66.351 211 66 1 1 211 379 584 1.82e-99 300
Msa0197650 MtrunA17_Chr8g0349681 68.932 206 63 1 1 206 170 374 4.08e-97 293
Msa0197650 MtrunA17_Chr8g0349681 75.625 160 39 0 1 160 8 167 5.64e-84 259
Msa0197650 MtrunA17_Chr2g0283131 48.095 210 105 2 3 211 10 216 2.00e-66 203
Msa0197650 MtrunA17_Chr4g0046261 47.619 210 106 2 3 211 10 216 1.53e-65 201
Msa0197650 MtrunA17_Chr2g0276941 53.073 179 84 0 3 181 12 190 1.03e-64 199
Msa0197650 MtrunA17_Chr4g0040781 47.143 210 107 2 3 211 10 216 1.53e-64 199
Msa0197650 MtrunA17_Chr2g0315551 46.479 213 104 2 3 211 10 216 2.03e-64 198
Msa0197650 MtrunA17_Chr1g0174281 50.000 178 89 0 5 182 14 191 7.78e-64 197
Msa0197650 MtrunA17_Chr2g0319951 55.621 169 75 0 3 171 10 178 1.96e-63 196
Msa0197650 MtrunA17_Chr7g0231131 53.333 165 77 0 5 169 14 178 3.82e-63 195
Msa0197650 MtrunA17_Chr4g0055651 45.455 209 102 1 3 211 5 201 7.20e-62 191
Msa0197650 MtrunA17_Chr2g0325091 46.009 213 104 2 3 211 8 213 9.91e-62 191
Msa0197650 MtrunA17_Chr7g0250531 45.933 209 101 1 3 211 5 201 2.58e-61 190
Msa0197650 MtrunA17_Chr4g0032201 45.755 212 106 3 3 211 9 214 4.81e-61 189
Msa0197650 MtrunA17_Chr1g0212521 46.890 209 104 3 3 210 12 214 5.42e-61 189
Msa0197650 MtrunA17_Chr8g0381841 44.444 216 102 4 5 210 16 223 6.55e-61 189
Msa0197650 MtrunA17_Chr3g0112681 46.226 212 106 2 3 211 9 215 7.42e-61 189
Msa0197650 MtrunA17_Chr4g0030911 46.890 209 103 3 3 210 12 213 1.82e-60 188
Msa0197650 MtrunA17_Chr3g0123821 46.193 197 101 2 5 196 15 211 1.83e-60 188
Msa0197650 MtrunA17_Chr8g0335471 46.411 209 101 2 3 211 5 202 4.59e-59 184
Msa0197650 MtrunA17_Chr7g0214241 43.541 209 114 2 5 211 14 220 4.61e-59 185
Msa0197650 MtrunA17_Chr7g0263071 49.733 187 91 2 3 188 12 196 5.18e-59 184
Msa0197650 MtrunA17_Chr1g0182321 45.455 209 107 4 3 210 12 214 6.10e-59 184
Msa0197650 MtrunA17_Chr1g0182301 44.976 209 108 4 3 210 12 214 2.23e-58 183
Msa0197650 MtrunA17_Chr2g0276931 50.296 169 84 0 3 171 6 174 4.05e-58 182
Msa0197650 MtrunA17_Chr7g0275991 47.179 195 99 1 5 195 19 213 5.24e-58 182
Msa0197650 MtrunA17_Chr8g0351861 51.829 164 79 0 5 168 15 178 5.34e-58 182
Msa0197650 MtrunA17_Chr7g0234201 44.928 207 111 1 5 211 12 215 8.60e-58 181
Msa0197650 MtrunA17_Chr8g0346421 53.165 158 74 0 5 162 25 182 5.79e-57 180
Msa0197650 MtrunA17_Chr6g0482721 45.894 207 110 1 5 211 11 215 3.94e-56 177
Msa0197650 MtrunA17_Chr1g0189361 43.128 211 116 1 5 211 13 223 5.60e-56 177
Msa0197650 MtrunA17_Chr8g0392931 45.794 214 101 3 5 211 13 218 3.86e-53 169
Msa0197650 MtrunA17_Chr2g0327911 45.714 175 93 2 2 174 11 185 3.58e-51 164
Msa0197650 MtrunA17_Chr7g0265001 45.455 209 99 6 7 211 17 214 2.36e-50 162
Msa0197650 MtrunA17_Chr8g0384311 42.925 212 104 6 3 210 10 208 3.95e-50 162
Msa0197650 MtrunA17_Chr1g0159481 42.925 212 107 6 3 211 14 214 7.65e-49 159
Msa0197650 MtrunA17_Chr8g0390561 43.210 162 92 0 8 169 11 172 5.99e-48 155
Msa0197650 MtrunA17_Chr3g0109721 43.312 157 89 0 8 164 12 168 8.13e-47 153
Msa0197650 MtrunA17_Chr3g0130271 49.068 161 78 4 3 160 9 168 1.20e-46 152
Msa0197650 MtrunA17_Chr5g0433561 42.500 160 92 0 8 167 12 171 2.80e-46 151
Msa0197650 MtrunA17_Chr1g0199331 41.772 158 91 1 8 164 33 190 3.27e-46 151
Msa0197650 MtrunA17_Chr1g0197331 49.693 163 77 4 2 160 11 172 4.47e-46 151
Msa0197650 MtrunA17_Chr1g0180291 48.235 170 83 4 3 169 11 178 1.12e-45 150
Msa0197650 MtrunA17_Chr4g0055081 34.286 210 119 2 7 210 10 206 4.71e-44 146
Msa0197650 MtrunA17_Chr8g0382221 38.509 161 99 0 7 167 10 170 3.15e-43 144
Msa0197650 MtrunA17_Chr3g0123971 35.912 181 111 1 7 182 10 190 7.68e-43 143
Msa0197650 MtrunA17_Chr5g0400131 36.264 182 110 1 7 182 10 191 3.09e-42 141
Msa0197650 MtrunA17_Chr6g0466301 38.095 168 97 3 6 166 8 175 3.91e-35 123
Msa0197650 MtrunA17_Chr6g0465491 38.095 168 97 3 6 166 8 175 3.91e-35 123
Msa0197650 MtrunA17_Chr4g0034871 36.683 199 116 4 6 197 8 203 2.25e-34 121
Msa0197650 MtrunA17_Chr8g0383261 37.952 166 96 2 6 164 12 177 5.23e-34 120
Msa0197650 MtrunA17_Chr1g0201121 34.597 211 118 6 6 209 8 205 2.51e-33 119
Msa0197650 MtrunA17_Chr2g0331691 37.654 162 94 3 6 160 10 171 1.50e-31 114
Msa0197650 MtrunA17_Chr4g0004661 37.654 162 94 3 6 160 64 225 3.81e-30 112
Msa0197650 MtrunA17_Chr2g0325101 31.977 172 103 5 1 160 1 170 3.66e-25 97.4
Msa0197650 MtrunA17_Chr6g0486041 32.558 172 102 5 1 160 1 170 3.54e-24 95.1
Msa0197650 MtrunA17_Chr6g0466161 35.762 151 90 3 23 166 7 157 5.07e-24 94.7
Msa0197650 MtrunA17_Chr6g0465471 35.762 151 90 3 23 166 7 157 5.18e-24 94.7
Msa0197650 MtrunA17_Chr4g0037021 32.558 172 102 6 1 160 1 170 1.55e-22 90.5
Msa0197650 MtrunA17_Chr3g0117931 30.168 179 111 5 6 172 8 184 1.21e-21 88.6
Msa0197650 MtrunA17_Chr3g0138101 31.646 158 105 2 7 164 14 168 2.84e-21 87.8
Msa0197650 MtrunA17_Chr3g0138121 31.646 158 105 2 7 164 14 168 2.96e-21 87.8
Msa0197650 MtrunA17_Chr3g0138111 31.646 158 105 2 7 164 14 168 3.32e-21 87.4
Msa0197650 MtrunA17_Chr8g0371501 28.488 172 109 5 1 160 1 170 8.89e-21 85.9
Msa0197650 MtrunA17_Chr5g0405791 27.907 172 110 5 1 160 1 170 4.62e-20 84.0
Msa0197650 MtrunA17_Chr4g0046211 33.065 124 80 3 1 123 1 122 8.30e-19 79.3
Msa0197650 MtrunA17_Chr8g0349691 73.810 42 11 0 1 42 1 42 5.62e-18 74.3
Msa0197650 MtrunA17_Chr6g0466431 35.789 95 52 1 6 100 8 93 4.86e-17 73.6
Msa0197650 MtrunA17_Chr6g0465611 35.789 95 52 1 6 100 8 93 4.86e-17 73.6
Msa0197650 MtrunA17_Chr2g0331841 43.103 58 33 0 75 132 2 59 2.75e-13 63.5
Msa0197650 MtrunA17_Chr1g0178291 32.075 159 98 5 2 160 427 575 3.13e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197650 AT4G17170.1 97.143 210 6 0 1 210 1 210 7.96e-155 427
Msa0197650 AT4G35860.1 85.238 210 31 0 1 210 1 210 1.30e-136 381
Msa0197650 AT4G17160.1 78.673 211 37 2 1 210 1 204 8.49e-121 341
Msa0197650 AT4G35860.2 81.707 164 30 0 47 210 1 164 1.56e-100 288
Msa0197650 AT5G45750.1 46.479 213 103 2 3 211 10 215 7.37e-66 202
Msa0197650 AT5G60860.1 48.095 210 105 2 3 211 10 216 9.15e-66 202
Msa0197650 AT3G12160.1 47.393 211 101 2 5 210 14 219 2.39e-64 199
Msa0197650 AT4G18430.1 48.095 210 105 2 3 211 10 216 3.76e-64 198
Msa0197650 AT3G15060.1 47.368 209 108 1 3 211 10 216 8.25e-64 197
Msa0197650 AT2G33870.1 47.664 214 101 3 3 211 10 217 1.33e-63 196
Msa0197650 AT5G47960.1 48.077 208 105 2 5 210 14 220 4.14e-63 196
Msa0197650 AT1G28550.1 47.664 214 101 3 3 211 10 217 4.51e-63 195
Msa0197650 AT1G06400.1 47.418 213 101 2 3 211 10 215 1.71e-62 194
Msa0197650 AT4G39990.1 46.698 212 103 3 5 211 16 222 2.34e-62 194
Msa0197650 AT1G07410.1 45.755 212 105 2 3 211 9 213 3.44e-62 193
Msa0197650 AT4G18800.1 45.972 211 105 2 3 211 10 213 4.82e-62 192
Msa0197650 AT1G16920.1 53.293 167 78 0 3 169 10 176 8.01e-62 192
Msa0197650 AT1G02130.1 45.933 209 102 1 3 211 5 202 1.26e-61 191
Msa0197650 AT4G17530.1 46.411 209 100 2 3 211 5 201 1.50e-61 191
Msa0197650 AT1G09630.1 45.455 209 112 1 3 211 9 215 3.23e-61 191
Msa0197650 AT5G65270.1 46.479 213 106 3 5 211 16 226 1.04e-60 189
Msa0197650 AT3G46830.1 53.846 169 78 0 3 171 9 177 1.08e-60 189
Msa0197650 AT3G46830.2 53.846 169 78 0 3 171 9 177 1.08e-60 189
Msa0197650 AT5G59150.1 45.755 212 108 2 3 211 9 216 7.50e-60 187
Msa0197650 AT3G11730.1 47.847 209 98 3 3 210 5 203 8.43e-60 186
Msa0197650 AT5G47200.1 45.933 209 101 2 3 211 5 201 8.75e-60 186
Msa0197650 AT3G09900.1 45.714 210 108 3 3 211 12 216 9.76e-59 184
Msa0197650 AT5G59840.1 46.411 209 105 3 3 210 12 214 2.44e-58 183
Msa0197650 AT3G46060.2 46.411 209 105 3 3 210 12 214 2.94e-58 183
Msa0197650 AT3G46060.3 46.411 209 105 3 3 210 12 214 2.94e-58 183
Msa0197650 AT3G46060.1 46.411 209 105 3 3 210 12 214 2.94e-58 183
Msa0197650 AT2G43130.1 45.411 207 109 2 5 211 11 213 3.22e-58 183
Msa0197650 AT5G03520.1 45.714 210 106 3 3 211 12 214 4.03e-58 182
Msa0197650 AT3G53610.2 44.976 209 108 3 3 210 12 214 1.17e-57 181
Msa0197650 AT3G53610.3 44.976 209 108 3 3 210 12 214 1.17e-57 181
Msa0197650 AT3G53610.1 44.976 209 108 3 3 210 12 214 1.17e-57 181
Msa0197650 AT5G47520.1 46.047 215 101 3 5 211 13 220 1.07e-56 179
Msa0197650 AT3G07410.1 43.961 207 115 1 5 211 11 216 1.66e-56 178
Msa0197650 AT1G05810.1 42.788 208 116 2 5 211 11 216 3.40e-56 178
Msa0197650 AT2G31680.1 44.019 209 113 2 5 211 11 217 4.65e-56 177
Msa0197650 AT1G05810.2 42.788 208 116 2 5 211 57 262 8.88e-56 178
Msa0197650 AT1G18200.1 47.668 193 94 1 5 190 12 204 3.77e-55 176
Msa0197650 AT1G73640.1 51.497 167 81 0 5 171 12 178 2.17e-54 174
Msa0197650 AT1G01200.1 49.405 168 84 1 5 171 27 194 6.76e-54 172
Msa0197650 AT1G43890.3 51.875 160 74 3 3 160 10 168 8.34e-51 164
Msa0197650 AT1G43890.1 51.875 160 74 3 3 160 10 168 8.34e-51 164
Msa0197650 AT1G43890.2 51.875 160 74 3 3 160 10 168 8.34e-51 164
Msa0197650 AT5G45130.1 38.235 204 111 3 8 211 12 200 1.11e-46 153
Msa0197650 AT5G03530.2 49.123 171 80 4 3 169 10 177 1.57e-46 153
Msa0197650 AT5G03530.1 49.123 171 80 4 3 169 10 177 1.57e-46 153
Msa0197650 AT4G19640.1 42.675 157 90 0 8 164 12 168 4.60e-46 151
Msa0197650 AT5G45130.2 38.119 202 110 4 10 211 22 208 7.13e-46 151
Msa0197650 AT3G54840.1 41.558 154 89 1 8 160 35 188 1.55e-44 147
Msa0197650 AT3G54840.2 41.558 154 89 1 8 160 35 188 1.79e-44 147
Msa0197650 AT3G54840.3 41.447 152 88 1 10 160 3 154 3.04e-44 145
Msa0197650 AT5G59150.2 44.910 167 85 2 48 211 3 165 9.97e-44 144
Msa0197650 AT4G39890.1 40.123 162 96 1 7 167 10 171 1.15e-43 145
Msa0197650 AT5G10260.1 38.509 161 99 0 7 167 10 170 1.46e-43 145
Msa0197650 AT5G03520.2 43.023 172 90 3 41 211 40 204 2.68e-43 144
Msa0197650 AT2G22290.1 37.267 161 101 0 7 167 10 170 2.32e-41 139
Msa0197650 AT2G44610.1 34.615 182 113 1 7 182 10 191 1.97e-40 137
Msa0197650 AT5G64990.1 37.888 161 100 0 7 167 8 168 3.51e-40 136
Msa0197650 AT3G09910.5 43.429 175 92 4 3 173 10 181 1.43e-38 132
Msa0197650 AT3G09910.4 43.429 175 92 4 3 173 10 181 1.43e-38 132
Msa0197650 AT5G64990.2 36.310 168 100 1 7 167 8 175 2.10e-37 129
Msa0197650 AT3G09910.3 44.379 169 87 4 3 167 10 175 2.81e-37 129
Msa0197650 AT3G09910.1 44.379 169 87 4 3 167 10 175 2.81e-37 129
Msa0197650 AT3G09910.2 44.379 169 87 4 3 167 10 175 2.81e-37 129
Msa0197650 AT3G18820.1 40.123 162 90 3 6 160 8 169 2.62e-34 121
Msa0197650 AT2G21880.1 39.157 166 94 3 6 164 9 174 9.78e-34 120
Msa0197650 AT1G22740.1 37.423 163 95 3 6 161 8 170 3.48e-33 118
Msa0197650 AT4G09720.1 38.690 168 96 3 6 166 8 175 3.92e-33 118
Msa0197650 AT5G39620.1 38.182 165 95 3 7 164 6 170 5.03e-33 118
Msa0197650 AT4G19640.2 38.583 127 78 0 8 134 12 138 8.62e-33 115
Msa0197650 AT1G52280.1 38.889 162 92 3 6 160 8 169 1.05e-32 117
Msa0197650 AT1G49300.2 38.650 163 93 3 6 161 8 170 1.11e-32 117
Msa0197650 AT1G49300.1 38.650 163 93 3 6 161 8 170 1.11e-32 117
Msa0197650 AT4G19640.3 38.168 131 81 0 8 138 12 142 1.40e-32 116
Msa0197650 AT4G09720.4 38.728 173 94 4 6 166 8 180 4.29e-32 116
Msa0197650 AT4G09720.3 37.430 179 94 4 6 166 8 186 3.85e-31 114
Msa0197650 AT3G16100.1 37.654 162 94 3 6 160 8 169 6.25e-31 112
Msa0197650 AT2G21880.4 37.415 147 85 3 25 164 3 149 1.63e-25 98.2
Msa0197650 AT2G21880.3 37.415 147 85 3 25 164 3 149 1.63e-25 98.2
Msa0197650 AT5G46025.1 44.340 106 58 1 67 171 5 110 7.72e-25 94.4
Msa0197650 AT2G21880.2 34.337 166 94 4 6 164 9 166 5.29e-24 94.7
Msa0197650 AT4G28950.1 31.765 170 104 5 1 160 1 168 6.86e-24 94.7
Msa0197650 AT4G35020.1 33.140 172 101 5 1 160 1 170 8.52e-24 94.4
Msa0197650 AT4G35020.2 33.140 172 101 5 1 160 1 170 8.52e-24 94.4
Msa0197650 AT4G35020.3 33.140 172 101 5 1 160 1 170 8.52e-24 94.4
Msa0197650 AT4G09720.6 38.235 136 77 3 38 166 6 141 3.24e-23 92.0
Msa0197650 AT4G09720.5 38.235 136 77 3 38 166 6 141 3.24e-23 92.0
Msa0197650 AT4G09720.2 38.235 136 77 3 38 166 6 141 3.24e-23 92.0
Msa0197650 AT1G75840.1 30.814 172 105 5 1 160 1 170 5.30e-23 92.0
Msa0197650 AT5G45970.1 30.814 172 105 5 1 160 1 170 1.05e-22 91.3
Msa0197650 AT2G44690.1 31.737 167 100 5 6 160 18 182 2.43e-22 90.5
Msa0197650 AT1G20090.1 29.940 167 103 5 6 160 5 169 6.14e-22 89.4
Msa0197650 AT5G20020.1 31.646 158 105 2 7 164 14 168 3.42e-21 87.8
Msa0197650 AT5G55190.1 31.646 158 105 2 7 164 14 168 4.31e-21 87.8
Msa0197650 AT5G20010.1 31.646 158 105 2 7 164 14 168 4.45e-21 87.4
Msa0197650 AT3G51300.1 28.488 172 109 5 1 160 1 170 8.85e-21 86.3
Msa0197650 AT3G48040.1 30.409 171 105 5 2 160 4 172 1.18e-20 86.3
Msa0197650 AT5G55080.1 30.435 161 109 2 7 167 14 171 2.49e-20 85.5
Msa0197650 AT2G17800.2 28.488 172 109 5 1 160 1 170 7.09e-20 84.0
Msa0197650 AT2G17800.1 28.488 172 109 5 1 160 1 170 7.09e-20 84.0
Msa0197650 AT5G62880.1 29.825 171 106 5 2 160 4 172 8.73e-20 84.0
Msa0197650 AT4G35950.1 27.907 172 110 5 1 160 1 170 3.45e-19 82.0
Msa0197650 AT5G62880.2 29.518 166 103 5 6 159 8 171 4.58e-18 79.0
Msa0197650 AT3G48040.2 29.814 161 99 5 6 154 8 166 6.67e-18 78.2
Msa0197650 AT4G35020.4 33.058 121 78 3 1 120 1 119 5.75e-16 72.4
Msa0197650 AT4G35020.5 33.058 121 78 3 1 120 1 119 5.75e-16 72.4
Msa0197650 AT4G08190.1 48.438 64 30 1 97 160 67 127 3.52e-12 61.6
Msa0197650 AT3G51290.2 26.400 125 79 4 48 160 648 771 8.49e-11 61.2

Find 66 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTTTCTGTCTTCTCTTC+TGG 0.117460 2_1:-15823555 Msa0197650:three_prime_UTR
TTCTGTTGAAATATAATTCT+TGG 0.206363 2_1:-15823371 Msa0197650:three_prime_UTR
AGCCAATCAAGTTGCAAATA+TGG 0.213769 2_1:-15826071 Msa0197650:CDS
TGATAAATTTATGGCCTTTA+CGG 0.222801 2_1:+15823337 None:intergenic
TTCTTTCTGTCTTCTCTTCT+GGG 0.232078 2_1:-15823554 Msa0197650:three_prime_UTR
TTCATATGCTTGCAGTCTTA+TGG 0.237130 2_1:-15823698 Msa0197650:intron
TCTGTCTTCTCTTCTGGGTT+TGG 0.273808 2_1:-15823549 Msa0197650:three_prime_UTR
TTGACCATCGGTGTTGAATT+TGG 0.325534 2_1:-15826120 Msa0197650:CDS
GTAGGGTATGGTGGAATTCC+TGG 0.327891 2_1:-15823668 Msa0197650:CDS
GAAAGAAAGAAAGAAAGAAA+AGG 0.328211 2_1:+15827049 None:intergenic
AAAGAAAGAAAGAAAGAAAA+GGG 0.331498 2_1:+15827050 None:intergenic
TACATCATCATCGGCGATAC+TGG 0.349931 2_1:-15826948 Msa0197650:intron
GGCCCTTCTGCTGCGGGTGG+AGG 0.361206 2_1:-15823626 Msa0197650:CDS
CAGCCTCCACCCGCAGCAGA+AGG 0.362111 2_1:+15823623 None:intergenic
TCCCATATTTGCAACTTGAT+TGG 0.379893 2_1:+15826069 None:intergenic
GGTGGAATTCCTGGACCATC+TGG 0.382675 2_1:-15823659 Msa0197650:CDS
AGAACTACATTGAAGCAAAT+AGG 0.396523 2_1:+15823573 None:intergenic
AGGGATGGCCCTTCTGCTGC+GGG 0.401144 2_1:-15823632 Msa0197650:CDS
GCCAATCAAGTTGCAAATAT+GGG 0.406809 2_1:-15826070 Msa0197650:CDS
AACAGTTTGCAAAGGAGAAC+GGG 0.430066 2_1:-15824212 Msa0197650:CDS
CATTTAATCACTTAGCTAGC+TGG 0.445587 2_1:-15824338 Msa0197650:CDS
CAGTCTTATGGAATAAAAGT+AGG 0.450766 2_1:-15823686 Msa0197650:CDS
TCGCTGGAAACTCTATCATT+CGG 0.464821 2_1:-15827145 Msa0197650:five_prime_UTR
CCGATGGTCAAGTCATGAAC+AGG 0.483056 2_1:+15826132 None:intergenic
AATATGACAATTATGCTGAT+TGG 0.496339 2_1:-15824285 Msa0197650:CDS
TCATATTACAGAGGAGCTGC+AGG 0.498390 2_1:-15825052 Msa0197650:CDS
TCCTGGACCATCTGGAGGTA+GGG 0.509121 2_1:-15823651 Msa0197650:CDS
CTTAATTAATGGTATAGAGC+AGG 0.511733 2_1:-15827272 None:intergenic
GAAGCAAGGAACTTAGATAG+AGG 0.513312 2_1:-15827214 Msa0197650:five_prime_UTR
GGACCATCTGGAGGTAGGGA+TGG 0.519816 2_1:-15823647 Msa0197650:CDS
GGAATAAAAGTAGGGTATGG+TGG 0.519922 2_1:-15823677 Msa0197650:CDS
GATGGCCCTTCTGCTGCGGG+TGG 0.524107 2_1:-15823629 Msa0197650:CDS
CAAGTTGCAAATATGGGATA+CGG 0.527831 2_1:-15826064 Msa0197650:intron
TGGCATTAGACTAGCCGTAA+AGG 0.528762 2_1:-15823351 Msa0197650:three_prime_UTR
TATGGAATAAAAGTAGGGTA+TGG 0.533226 2_1:-15823680 Msa0197650:CDS
TAGGGATGGCCCTTCTGCTG+CGG 0.533754 2_1:-15823633 Msa0197650:CDS
GAACAGTTTGCAAAGGAGAA+CGG 0.544908 2_1:-15824213 Msa0197650:CDS
AGCCTCCACCCGCAGCAGAA+GGG 0.547873 2_1:+15823624 None:intergenic
AACTGCTCAGAATGTTGAAG+AGG 0.551651 2_1:-15824163 Msa0197650:intron
CTCTTCAAATACATCATCAT+CGG 0.552415 2_1:-15826957 Msa0197650:CDS
AAGCAAGGAACTTAGATAGA+GGG 0.555718 2_1:-15827213 Msa0197650:five_prime_UTR
CGGGCTGTAAGCACGGAAGA+AGG 0.556486 2_1:-15824237 Msa0197650:CDS
TGACCTTGTGATAGATCTGA+AGG 0.556542 2_1:+15825072 None:intergenic
TCCCTACCTCCAGATGGTCC+AGG 0.559719 2_1:+15823650 None:intergenic
CTTGATTGGCTTGTTATCGA+TGG 0.560209 2_1:+15826083 None:intergenic
TAATCACTTAGCTAGCTGGT+TGG 0.562132 2_1:-15824334 Msa0197650:CDS
GTGTGATCTTGCTCACAGAC+GGG 0.563085 2_1:-15824256 Msa0197650:CDS
TGTGTGTATTATTGCCTCGC+TGG 0.566125 2_1:-15827161 Msa0197650:five_prime_UTR
TGCTTGTTTATGATATAACC+AGG 0.573499 2_1:-15825024 Msa0197650:intron
AGTCTTATGGAATAAAAGTA+GGG 0.573741 2_1:-15823685 Msa0197650:CDS
CGATGATGATGTATTTGAAG+AGG 0.579909 2_1:+15826958 None:intergenic
AGTGTGATCTTGCTCACAGA+CGG 0.590726 2_1:-15824257 Msa0197650:CDS
TCACAGACGGGCTGTAAGCA+CGG 0.591546 2_1:-15824244 Msa0197650:CDS
CCTGTTCATGACTTGACCAT+CGG 0.602736 2_1:-15826132 Msa0197650:CDS
TTCCTGGACCATCTGGAGGT+AGG 0.607438 2_1:-15823652 Msa0197650:CDS
CTAGCTGGTTGGAAGATGCA+AGG 0.612086 2_1:-15824323 Msa0197650:CDS
TCGGTGTTGAATTTGGTGCT+AGG 0.624612 2_1:-15826113 Msa0197650:CDS
AGCACCAAATTCAACACCGA+TGG 0.625004 2_1:+15826116 None:intergenic
AGGGAAGAAGGAAGTTGTCA+CGG 0.626381 2_1:-15827238 Msa0197650:five_prime_UTR
GAAGTTGTCACGGAGAAGCA+AGG 0.641524 2_1:-15827228 Msa0197650:five_prime_UTR
AGAAGGTGAACAGTTTGCAA+AGG 0.650461 2_1:-15824220 Msa0197650:CDS
GGAATTCCTGGACCATCTGG+AGG 0.651030 2_1:-15823656 Msa0197650:CDS
GGGCCATCCCTACCTCCAGA+TGG 0.652411 2_1:+15823644 None:intergenic
AATCCTTCAGATCTATCACA+AGG 0.690302 2_1:-15825075 Msa0197650:CDS
ATCACAAGGTCATATTACAG+AGG 0.702668 2_1:-15825061 Msa0197650:CDS
GAATGATAGAGTTTCCAGCG+AGG 0.795184 2_1:+15827147 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATATTTACATAGTTT+AGG - chr2_1:15824127-15824146 Msa0197650:intron 10.0%
!! TATTATATTTACATAGTTTA+GGG - chr2_1:15824128-15824147 Msa0197650:intron 10.0%
!! TATATACATGAAATAAATTA+TGG - chr2_1:15825054-15825073 Msa0197650:CDS 10.0%
!! AGATTGTATTATAAAAATAA+AGG + chr2_1:15826810-15826829 None:intergenic 10.0%
!! TGATAAAAAGATATTAGAAA+GGG + chr2_1:15823706-15823725 None:intergenic 15.0%
!! TTGATAAAAAGATATTAGAA+AGG + chr2_1:15823707-15823726 None:intergenic 15.0%
!!! ATTTATTCATTTTTCTTTTC+AGG - chr2_1:15823793-15823812 Msa0197650:intron 15.0%
!!! TTTATTCATTTTTCTTTTCA+GGG - chr2_1:15823794-15823813 Msa0197650:intron 15.0%
!! TTAACAAAATACAAATCAAA+CGG + chr2_1:15824327-15824346 None:intergenic 15.0%
!!! TAATTATGAAGTTTAAGTTT+TGG - chr2_1:15824344-15824363 Msa0197650:CDS 15.0%
!!! ATTATTTTATGTTGATTCAT+TGG - chr2_1:15824788-15824807 Msa0197650:intron 15.0%
!!! AAAGATTTTATCTAATAGAT+GGG - chr2_1:15825139-15825158 Msa0197650:intron 15.0%
!!! GAAAATAGTTATTGTATTTT+GGG + chr2_1:15825653-15825672 None:intergenic 15.0%
!!! TGAAAATAGTTATTGTATTT+TGG + chr2_1:15825654-15825673 None:intergenic 15.0%
!! TTAAATACAATTTCATAACT+TGG - chr2_1:15825974-15825993 Msa0197650:intron 15.0%
!! TAAATACAATTTCATAACTT+GGG - chr2_1:15825975-15825994 Msa0197650:intron 15.0%
!! CTTCATTATTAATATCATTA+AGG - chr2_1:15826756-15826775 Msa0197650:intron 15.0%
!! AAAGAAAGAAAGAAAGAAAA+GGG + chr2_1:15823565-15823584 None:intergenic 20.0%
!! GAAACAAAAGTAACAATAAA+GGG + chr2_1:15824245-15824264 None:intergenic 20.0%
!! TGAAACAAAAGTAACAATAA+AGG + chr2_1:15824246-15824265 None:intergenic 20.0%
!!! TTTTTTGAAAAAAATTGTGC+AGG - chr2_1:15824408-15824427 Msa0197650:intron 20.0%
!! ATAATGAGAACCTAATTATT+TGG - chr2_1:15825001-15825020 Msa0197650:intron 20.0%
!! TAATGAGAACCTAATTATTT+GGG - chr2_1:15825002-15825021 Msa0197650:intron 20.0%
!!! GAAAGATTTTATCTAATAGA+TGG - chr2_1:15825138-15825157 Msa0197650:intron 20.0%
!! ATCTCTGTTTATATATTAAG+TGG + chr2_1:15825331-15825350 None:intergenic 20.0%
!!! ATATGATTTGCAAATCATTT+TGG - chr2_1:15825925-15825944 Msa0197650:intron 20.0%
!!! ATAGCTTTTAGATTTTTTCT+AGG - chr2_1:15826002-15826021 Msa0197650:intron 20.0%
!!! TAGCTTTTAGATTTTTTCTA+GGG - chr2_1:15826003-15826022 Msa0197650:intron 20.0%
!! TCCAACAAAAATCAATTTAT+TGG - chr2_1:15826043-15826062 Msa0197650:intron 20.0%
!!! TCCAATAAATTGATTTTTGT+TGG + chr2_1:15826047-15826066 None:intergenic 20.0%
!! CATATAAAAACTCAAAATGA+CGG + chr2_1:15826082-15826101 None:intergenic 20.0%
!!! TGTGTTGTTTAATGTAAATA+AGG - chr2_1:15826205-15826224 Msa0197650:intron 20.0%
!! TTAATATCATTAAGGATTTG+TGG - chr2_1:15826764-15826783 Msa0197650:intron 20.0%
!! TAATATCATTAAGGATTTGT+GGG - chr2_1:15826765-15826784 Msa0197650:intron 20.0%
!! TTCTGTTGAAATATAATTCT+TGG - chr2_1:15827241-15827260 Msa0197650:five_prime_UTR 20.0%
! GAAAGAAAGAAAGAAAGAAA+AGG + chr2_1:15823566-15823585 None:intergenic 25.0%
! AAGATATTAGAAAGGGTTAA+TGG + chr2_1:15823699-15823718 None:intergenic 25.0%
! GAAAAATGAATAAATCCGAT+CGG + chr2_1:15823788-15823807 None:intergenic 25.0%
! TAACTAACTCCAACAATTAT+TGG - chr2_1:15824001-15824020 Msa0197650:intron 25.0%
! ATAGGTTAACCAATAATTGT+TGG + chr2_1:15824013-15824032 None:intergenic 25.0%
! TAGTAACTATATTGAGTAGT+AGG - chr2_1:15824839-15824858 Msa0197650:intron 25.0%
!!! GAGTATTCTTTGAAACAAAA+TGG + chr2_1:15824930-15824949 None:intergenic 25.0%
! CTCATTATCAACAATGTAAA+TGG + chr2_1:15824989-15825008 None:intergenic 25.0%
! AATGAGAACCTAATTATTTG+GGG - chr2_1:15825003-15825022 Msa0197650:intron 25.0%
! AAAACTATCCATTTGAAAAC+TGG + chr2_1:15825201-15825220 None:intergenic 25.0%
! GACATAAATTTCAATATGAG+AGG + chr2_1:15825248-15825267 None:intergenic 25.0%
! CACAAAATTTCAGAATAACA+AGG + chr2_1:15825272-15825291 None:intergenic 25.0%
! TAATCATTCTATGCTGAAAA+GGG + chr2_1:15825414-15825433 None:intergenic 25.0%
! ATAATCATTCTATGCTGAAA+AGG + chr2_1:15825415-15825434 None:intergenic 25.0%
! TTTATAAATTGTGAAGCTGA+AGG - chr2_1:15825478-15825497 Msa0197650:intron 25.0%
! GAACTTATTCACTATATTTC+AGG - chr2_1:15825505-15825524 Msa0197650:intron 25.0%
! ATTAAAGAAGCAATACATTG+TGG - chr2_1:15825680-15825699 Msa0197650:intron 25.0%
! TTAAAGAAGCAATACATTGT+GGG - chr2_1:15825681-15825700 Msa0197650:intron 25.0%
! TAAATAATCTCACCAAAGTT+TGG - chr2_1:15825782-15825801 Msa0197650:intron 25.0%
! ATTTCATATAATCCTTGAGA+TGG + chr2_1:15825877-15825896 None:intergenic 25.0%
! GCAAATCATATTTCAAAGAT+TGG + chr2_1:15825916-15825935 None:intergenic 25.0%
!!! TTTTGAGTTTTTATATGCCT+TGG - chr2_1:15826085-15826104 Msa0197650:CDS 25.0%
!!! TTTGAGTTTTTATATGCCTT+GGG - chr2_1:15826086-15826105 Msa0197650:CDS 25.0%
!!! TATTGGACAATTTTGATACA+TGG - chr2_1:15826154-15826173 Msa0197650:CDS 25.0%
! AATATGACAATTATGCTGAT+TGG - chr2_1:15826327-15826346 Msa0197650:intron 25.0%
!! AGTCAGATTTTATACATAAC+AGG - chr2_1:15826535-15826554 Msa0197650:intron 25.0%
! TTTATACATAACAGGTTCTT+AGG - chr2_1:15826543-15826562 Msa0197650:intron 25.0%
! AACCATATACAAAAAGATTC+AGG - chr2_1:15826648-15826667 Msa0197650:intron 25.0%
!! ATCCTGAATCTTTTTGTATA+TGG + chr2_1:15826653-15826672 None:intergenic 25.0%
! ATATACAAAAAGATTCAGGA+TGG - chr2_1:15826652-15826671 Msa0197650:intron 25.0%
!! AGTTTTTGATGTATCAAATG+AGG - chr2_1:15826675-15826694 Msa0197650:intron 25.0%
! ATGAAGTGATAAAACAAACA+AGG + chr2_1:15826742-15826761 None:intergenic 25.0%
!! AGTCTTATGGAATAAAAGTA+GGG - chr2_1:15826927-15826946 Msa0197650:intron 25.0%
GGAGAAAGAAAAATTAGAGA+TGG + chr2_1:15823516-15823535 None:intergenic 30.0%
CTCTTCAAATACATCATCAT+CGG - chr2_1:15823655-15823674 Msa0197650:CDS 30.0%
! ACAGTGAAGTAATGTTCTTT+TGG + chr2_1:15824067-15824086 None:intergenic 30.0%
! AGAGAGAAGGTGATATTTTA+TGG - chr2_1:15824159-15824178 Msa0197650:intron 30.0%
! TATGGACTAAATTAGAGAGA+AGG - chr2_1:15824177-15824196 Msa0197650:CDS 30.0%
! ATTCAATTTTGTTACTGCCA+TGG - chr2_1:15824218-15824237 Msa0197650:CDS 30.0%
!! TGAAGTTTAAGTTTTGGTAG+TGG - chr2_1:15824350-15824369 Msa0197650:intron 30.0%
AGTATGAACATTGAACAAGT+TGG + chr2_1:15824616-15824635 None:intergenic 30.0%
CAACCAAATAGAAATCTTCA+GGG + chr2_1:15824747-15824766 None:intergenic 30.0%
TCAACCAAATAGAAATCTTC+AGG + chr2_1:15824748-15824767 None:intergenic 30.0%
TATATTGAGTAGTAGGCTTA+GGG - chr2_1:15824846-15824865 Msa0197650:intron 30.0%
!! TTCTTTGAAACAAAATGGCA+TGG + chr2_1:15824925-15824944 None:intergenic 30.0%
CAAATCATCCCCAAATAATT+AGG + chr2_1:15825014-15825033 None:intergenic 30.0%
AATGATTATCCAGATTTCAG+TGG - chr2_1:15825426-15825445 Msa0197650:intron 30.0%
TGGAAACATTGTTCATTTGT+TGG - chr2_1:15825449-15825468 Msa0197650:intron 30.0%
CTTATTCACTATATTTCAGG+CGG - chr2_1:15825508-15825527 Msa0197650:intron 30.0%
TTATTCACTATATTTCAGGC+GGG - chr2_1:15825509-15825528 Msa0197650:intron 30.0%
TGCTTGTTTATGATATAACC+AGG - chr2_1:15825588-15825607 Msa0197650:intron 30.0%
ATAATAGAAGTCAAAGCTTG+AGG + chr2_1:15825617-15825636 None:intergenic 30.0%
TAAAGAAGCAATACATTGTG+GGG - chr2_1:15825682-15825701 Msa0197650:intron 30.0%
AGTATGTTGTTCCATGAAAT+TGG + chr2_1:15826133-15826152 None:intergenic 30.0%
CATGGAACAACATACTATAT+TGG - chr2_1:15826137-15826156 Msa0197650:CDS 30.0%
TAAAATCTGACTTTCCTTGT+GGG + chr2_1:15826527-15826546 None:intergenic 30.0%
ATAAAATCTGACTTTCCTTG+TGG + chr2_1:15826528-15826547 None:intergenic 30.0%
!!! GGTTCTTAGGTTGAATATTT+TGG - chr2_1:15826556-15826575 Msa0197650:intron 30.0%
! AATATAACCTATCCTTTTGC+AGG - chr2_1:15826606-15826625 Msa0197650:intron 30.0%
! TTTTTATGAATGCCTGCAAA+AGG + chr2_1:15826621-15826640 None:intergenic 30.0%
TCTGTGTATGTTTCAAGAAA+AGG - chr2_1:15826827-15826846 Msa0197650:intron 30.0%
! ACTTGTTTCTTGAATCAGAA+GGG + chr2_1:15826883-15826902 None:intergenic 30.0%
! CAGTCTTATGGAATAAAAGT+AGG - chr2_1:15826926-15826945 Msa0197650:intron 30.0%
TATGGAATAAAAGTAGGGTA+TGG - chr2_1:15826932-15826951 Msa0197650:intron 30.0%
AGAACTACATTGAAGCAAAT+AGG + chr2_1:15827042-15827061 None:intergenic 30.0%
AAGCAAGGAACTTAGATAGA+GGG - chr2_1:15823399-15823418 Msa0197650:three_prime_UTR 35.0%
! CGATGATGATGTATTTGAAG+AGG + chr2_1:15823657-15823676 None:intergenic 35.0%
TGGAGTTAGTTATCAGAACT+CGG + chr2_1:15823993-15824012 None:intergenic 35.0%
! TTCTTTTGGTAAAAACCCTC+CGG + chr2_1:15824053-15824072 None:intergenic 35.0%
TACTTCACTGTGTTAATAGC+AGG - chr2_1:15824076-15824095 Msa0197650:intron 35.0%
ACTTCACTGTGTTAATAGCA+GGG - chr2_1:15824077-15824096 Msa0197650:intron 35.0%
!!! AGAGAAGGTGATAGTTTTGA+TGG - chr2_1:15824192-15824211 Msa0197650:CDS 35.0%
AAGTAACAATAAAGGGTCCA+TGG + chr2_1:15824238-15824257 None:intergenic 35.0%
TAAGAATCAAAACCGCTAAG+TGG - chr2_1:15824271-15824290 Msa0197650:CDS 35.0%
AAGAATCAAAACCGCTAAGT+GGG - chr2_1:15824272-15824291 Msa0197650:CDS 35.0%
TTCAACTATTACCCACTTAG+CGG + chr2_1:15824286-15824305 None:intergenic 35.0%
GAAAAAAATTGTGCAGGAGT+TGG - chr2_1:15824414-15824433 Msa0197650:intron 35.0%
! AGCCAATCAAGTTGCAAATA+TGG - chr2_1:15824541-15824560 Msa0197650:intron 35.0%
! GCCAATCAAGTTGCAAATAT+GGG - chr2_1:15824542-15824561 Msa0197650:intron 35.0%
TCCCATATTTGCAACTTGAT+TGG + chr2_1:15824546-15824565 None:intergenic 35.0%
CAAGTTGCAAATATGGGATA+CGG - chr2_1:15824548-15824567 Msa0197650:intron 35.0%
! TGAACATTGAACAAGTTGGA+AGG + chr2_1:15824612-15824631 None:intergenic 35.0%
!! TATTGCTGTTTCTCGTTTCT+AGG - chr2_1:15824670-15824689 Msa0197650:intron 35.0%
! TGTTTCTCGTTTCTAGGAAT+TGG - chr2_1:15824676-15824695 Msa0197650:intron 35.0%
! CGTTTCTAGGAATTGGTAAT+TGG - chr2_1:15824683-15824702 Msa0197650:intron 35.0%
TGTGATGATCATTTCAATCC+AGG - chr2_1:15824707-15824726 Msa0197650:intron 35.0%
GTGATGATCATTTCAATCCA+GGG - chr2_1:15824708-15824727 Msa0197650:intron 35.0%
TCACCCTGAAGATTTCTATT+TGG - chr2_1:15824741-15824760 Msa0197650:intron 35.0%
CTATATTGAGTAGTAGGCTT+AGG - chr2_1:15824845-15824864 Msa0197650:intron 35.0%
CAGACTACAGATATGACAAA+CGG + chr2_1:15824884-15824903 None:intergenic 35.0%
AGTGTGATCTATAGTTTCCT+TGG - chr2_1:15824955-15824974 Msa0197650:intron 35.0%
GTGTGATCTATAGTTTCCTT+GGG - chr2_1:15824956-15824975 Msa0197650:intron 35.0%
TGTGATCTATAGTTTCCTTG+GGG - chr2_1:15824957-15824976 Msa0197650:intron 35.0%
!! TGGCTTTGTAGATGTAAGAT+AGG - chr2_1:15825074-15825093 Msa0197650:CDS 35.0%
TCTAAACTCATCTTCTCAAG+TGG - chr2_1:15825099-15825118 Msa0197650:intron 35.0%
! TAATAGATGGGAGTGTAGTT+TGG - chr2_1:15825151-15825170 Msa0197650:intron 35.0%
!! AAAACTGGAAGGTACCTTAA+GGG + chr2_1:15825186-15825205 None:intergenic 35.0%
CTATCCATTTGAAAACTGGA+AGG + chr2_1:15825197-15825216 None:intergenic 35.0%
AACAAAATTTGACCCAGATG+AGG - chr2_1:15825356-15825375 Msa0197650:intron 35.0%
AATTTCACAGAACCTCATCT+GGG + chr2_1:15825371-15825390 None:intergenic 35.0%
AAATTTCACAGAACCTCATC+TGG + chr2_1:15825372-15825391 None:intergenic 35.0%
AATCCTTCAGATCTATCACA+AGG - chr2_1:15825537-15825556 Msa0197650:intron 35.0%
ATCACAAGGTCATATTACAG+AGG - chr2_1:15825551-15825570 Msa0197650:intron 35.0%
AAAGAAGCAATACATTGTGG+GGG - chr2_1:15825683-15825702 Msa0197650:intron 35.0%
! CTCTCTTTTCTTCCAAACTT+TGG + chr2_1:15825797-15825816 None:intergenic 35.0%
ACTATCGTATGATCTTCCTT+AGG - chr2_1:15825819-15825838 Msa0197650:intron 35.0%
CTATCGTATGATCTTCCTTA+GGG - chr2_1:15825820-15825839 Msa0197650:intron 35.0%
TTTGAGTGCATCCAATTTCA+TGG - chr2_1:15826119-15826138 Msa0197650:CDS 35.0%
CATTTAATCACTTAGCTAGC+TGG - chr2_1:15826274-15826293 Msa0197650:intron 35.0%
! GACTTGTTTCTTGAATCAGA+AGG + chr2_1:15826884-15826903 None:intergenic 35.0%
TTCATATGCTTGCAGTCTTA+TGG - chr2_1:15826914-15826933 Msa0197650:intron 35.0%
TTCTTTCTGTCTTCTCTTCT+GGG - chr2_1:15827058-15827077 Msa0197650:five_prime_UTR 35.0%
GAAGCAAGGAACTTAGATAG+AGG - chr2_1:15823398-15823417 Msa0197650:three_prime_UTR 40.0%
TCGCTGGAAACTCTATCATT+CGG - chr2_1:15823467-15823486 Msa0197650:three_prime_UTR 40.0%
AAAAGCGAAGAGGGGAAAAA+GGG + chr2_1:15823537-15823556 None:intergenic 40.0%
AAAAAGCGAAGAGGGGAAAA+AGG + chr2_1:15823538-15823557 None:intergenic 40.0%
AGGGAAAGAAAAAGCGAAGA+GGG + chr2_1:15823546-15823565 None:intergenic 40.0%
AAGGGAAAGAAAAAGCGAAG+AGG + chr2_1:15823547-15823566 None:intergenic 40.0%
GGAGTTAGTTATCAGAACTC+GGG + chr2_1:15823992-15824011 None:intergenic 40.0%
! TAACCTATGCCCTTTTACCA+AGG - chr2_1:15824025-15824044 Msa0197650:intron 40.0%
TAGGGACTAAGTTAGAGAGA+AGG - chr2_1:15824146-15824165 Msa0197650:intron 40.0%
TCAAAAAACCCAAGTCCTCT+CGG + chr2_1:15824385-15824404 None:intergenic 40.0%
!! TTGACCATCGGTGTTGAATT+TGG - chr2_1:15824492-15824511 Msa0197650:intron 40.0%
!! CTTGATTGGCTTGTTATCGA+TGG + chr2_1:15824532-15824551 None:intergenic 40.0%
AGGGTGAAATTAAAAGACCC+TGG + chr2_1:15824728-15824747 None:intergenic 40.0%
ACTACAGATATGACAAACGG+CGG + chr2_1:15824881-15824900 None:intergenic 40.0%
GTGATCTATAGTTTCCTTGG+GGG - chr2_1:15824958-15824977 Msa0197650:intron 40.0%
TCATCTTCTCAAGTGGTCAT+GGG - chr2_1:15825106-15825125 Msa0197650:intron 40.0%
! ATGGGAGTGTAGTTTGGTAA+TGG - chr2_1:15825157-15825176 Msa0197650:intron 40.0%
!! TTTGGTAATGGTGACCCTTA+AGG - chr2_1:15825169-15825188 Msa0197650:intron 40.0%
!! GAAAACTGGAAGGTACCTTA+AGG + chr2_1:15825187-15825206 None:intergenic 40.0%
! GGTACCTTCCAGTTTTCAAA+TGG - chr2_1:15825190-15825209 Msa0197650:intron 40.0%
ATTCTATGCTGAAAAGGGAC+TGG + chr2_1:15825409-15825428 None:intergenic 40.0%
GATTATCCAGATTTCAGTGG+TGG - chr2_1:15825429-15825448 Msa0197650:intron 40.0%
ATGTTTCCACCACTGAAATC+TGG + chr2_1:15825438-15825457 None:intergenic 40.0%
TGACCTTGTGATAGATCTGA+AGG + chr2_1:15825543-15825562 None:intergenic 40.0%
GTATGATCTTCCTTAGGGTT+AGG - chr2_1:15825825-15825844 Msa0197650:intron 40.0%
CTATTCATAAACACAGGGTC+AGG + chr2_1:15826246-15826265 None:intergenic 40.0%
CTGACCCTGTGTTTATGAAT+AGG - chr2_1:15826244-15826263 Msa0197650:intron 40.0%
ACCCTGTGTTTATGAATAGG+AGG - chr2_1:15826247-15826266 Msa0197650:intron 40.0%
CCCTCCTATTCATAAACACA+GGG + chr2_1:15826251-15826270 None:intergenic 40.0%
CCCTGTGTTTATGAATAGGA+GGG - chr2_1:15826248-15826267 Msa0197650:intron 40.0%
TCCCTCCTATTCATAAACAC+AGG + chr2_1:15826252-15826271 None:intergenic 40.0%
TAATCACTTAGCTAGCTGGT+TGG - chr2_1:15826278-15826297 Msa0197650:intron 40.0%
AGAAGGTGAACAGTTTGCAA+AGG - chr2_1:15826392-15826411 Msa0197650:intron 40.0%
GAACAGTTTGCAAAGGAGAA+CGG - chr2_1:15826399-15826418 Msa0197650:intron 40.0%
AACAGTTTGCAAAGGAGAAC+GGG - chr2_1:15826400-15826419 Msa0197650:intron 40.0%
! ATTCTGAGCAGTTTTTGCTG+AGG + chr2_1:15826442-15826461 None:intergenic 40.0%
AACTGCTCAGAATGTTGAAG+AGG - chr2_1:15826449-15826468 Msa0197650:intron 40.0%
ATGAATGCCTGCAAAAGGAT+AGG + chr2_1:15826616-15826635 None:intergenic 40.0%
CAGGCATTCATAAAAACAGC+TGG - chr2_1:15826625-15826644 Msa0197650:intron 40.0%
GGAATAAAAGTAGGGTATGG+TGG - chr2_1:15826935-15826954 Msa0197650:intron 40.0%
GTTCTTTCTGTCTTCTCTTC+TGG - chr2_1:15827057-15827076 Msa0197650:five_prime_UTR 40.0%
! TAGAGCAGGATCGTTTTCGT+AGG - chr2_1:15823354-15823373 Msa0197650:three_prime_UTR 45.0%
! AGAGCAGGATCGTTTTCGTA+GGG - chr2_1:15823355-15823374 Msa0197650:three_prime_UTR 45.0%
! GATCGTTTTCGTAGGGAAGA+AGG - chr2_1:15823362-15823381 Msa0197650:three_prime_UTR 45.0%
AGGGAAGAAGGAAGTTGTCA+CGG - chr2_1:15823374-15823393 Msa0197650:three_prime_UTR 45.0%
TGTGTGTATTATTGCCTCGC+TGG - chr2_1:15823451-15823470 Msa0197650:three_prime_UTR 45.0%
GAATGATAGAGTTTCCAGCG+AGG + chr2_1:15823468-15823487 None:intergenic 45.0%
GGGAAAGAAAAAGCGAAGAG+GGG + chr2_1:15823545-15823564 None:intergenic 45.0%
TACATCATCATCGGCGATAC+TGG - chr2_1:15823664-15823683 Msa0197650:CDS 45.0%
GAAATCGAAGCTGGAACTGT+TGG + chr2_1:15823766-15823785 None:intergenic 45.0%
TTCCAGCTTCGATTTCCGAT+CGG - chr2_1:15823770-15823789 Msa0197650:intron 45.0%
! GTTCCTTGGTAAAAGGGCAT+AGG + chr2_1:15824031-15824050 None:intergenic 45.0%
! ATGCCCTTTTACCAAGGAAC+CGG - chr2_1:15824031-15824050 Msa0197650:intron 45.0%
AATTCATGCCGAGAGGACTT+GGG - chr2_1:15824374-15824393 Msa0197650:intron 45.0%
CCTGTTCATGACTTGACCAT+CGG - chr2_1:15824480-15824499 Msa0197650:intron 45.0%
AGCACCAAATTCAACACCGA+TGG + chr2_1:15824499-15824518 None:intergenic 45.0%
!! TCGGTGTTGAATTTGGTGCT+AGG - chr2_1:15824499-15824518 Msa0197650:intron 45.0%
!! TGTAAATGGATTAGCCCCCA+AGG + chr2_1:15824975-15824994 None:intergenic 45.0%
CTCATCTTCTCAAGTGGTCA+TGG - chr2_1:15825105-15825124 Msa0197650:intron 45.0%
CATCTTCTCAAGTGGTCATG+GGG - chr2_1:15825107-15825126 Msa0197650:intron 45.0%
AAGTGGTCATGGGGTATGAA+TGG - chr2_1:15825116-15825135 Msa0197650:intron 45.0%
TCATATTACAGAGGAGCTGC+AGG - chr2_1:15825560-15825579 Msa0197650:intron 45.0%
AGTCAAAGCTTGAGGATACC+TGG + chr2_1:15825609-15825628 None:intergenic 45.0%
TGGGGGATGATGAAAATCAC+TGG - chr2_1:15825700-15825719 Msa0197650:intron 45.0%
GGGGGATGATGAAAATCACT+GGG - chr2_1:15825701-15825720 Msa0197650:intron 45.0%
TCACTGGGACAAGTCATGAA+TGG - chr2_1:15825716-15825735 Msa0197650:intron 45.0%
AGGTGTAGTTCCTAACCCTA+AGG + chr2_1:15825838-15825857 None:intergenic 45.0%
CTCAAAACATGCAACTCCCA+AGG + chr2_1:15826105-15826124 None:intergenic 45.0%
AGTGTGATCTTGCTCACAGA+CGG - chr2_1:15826355-15826374 Msa0197650:intron 45.0%
!!! GGAGAACGGGTTGATTTTCA+TGG - chr2_1:15826413-15826432 Msa0197650:intron 45.0%
!!! GAACGGGTTGATTTTCATGG+AGG - chr2_1:15826416-15826435 Msa0197650:intron 45.0%
ATCTGACTTTCCTTGTGGGA+GGG + chr2_1:15826523-15826542 None:intergenic 45.0%
AATCTGACTTTCCTTGTGGG+AGG + chr2_1:15826524-15826543 None:intergenic 45.0%
TCTGTCTTCTCTTCTGGGTT+TGG - chr2_1:15827063-15827082 Msa0197650:five_prime_UTR 45.0%
! TGGCATTAGACTAGCCGTAA+AGG - chr2_1:15827261-15827280 Msa0197650:five_prime_UTR 45.0%
GAAGTTGTCACGGAGAAGCA+AGG - chr2_1:15823384-15823403 Msa0197650:three_prime_UTR 50.0%
TTGTGTGCGAGAGAGAACGA+TGG + chr2_1:15823598-15823617 None:intergenic 50.0%
ATCCGATCGGAAATCGAAGC+TGG + chr2_1:15823775-15823794 None:intergenic 50.0%
CCTCCGGTTCCTTGGTAAAA+GGG + chr2_1:15824037-15824056 None:intergenic 50.0%
! CCTTTTACCAAGGAACCGGA+GGG - chr2_1:15824035-15824054 Msa0197650:intron 50.0%
GTAAAAACCCTCCGGTTCCT+TGG + chr2_1:15824045-15824064 None:intergenic 50.0%
TAGTGGCAATTCATGCCGAG+AGG - chr2_1:15824367-15824386 Msa0197650:intron 50.0%
CAATTCATGCCGAGAGGACT+TGG - chr2_1:15824373-15824392 Msa0197650:intron 50.0%
CCGATGGTCAAGTCATGAAC+AGG + chr2_1:15824483-15824502 None:intergenic 50.0%
CTAGCTGGTTGGAAGATGCA+AGG - chr2_1:15826289-15826308 Msa0197650:intron 50.0%
GTGTGATCTTGCTCACAGAC+GGG - chr2_1:15826356-15826375 Msa0197650:intron 50.0%
! GTAGGGTATGGTGGAATTCC+TGG - chr2_1:15826944-15826963 Msa0197650:intron 50.0%
! CCCTTTTACCAAGGAACCGG+AGG - chr2_1:15824034-15824053 Msa0197650:intron 55.0%
CCCTCCGGTTCCTTGGTAAA+AGG + chr2_1:15824038-15824057 None:intergenic 55.0%
!! TGAGATGGACTGCGAAGTGG+TGG + chr2_1:15825862-15825881 None:intergenic 55.0%
!! CCTTGAGATGGACTGCGAAG+TGG + chr2_1:15825865-15825884 None:intergenic 55.0%
CCACTTCGCAGTCCATCTCA+AGG - chr2_1:15825862-15825881 Msa0197650:intron 55.0%
!! TCACAGACGGGCTGTAAGCA+CGG - chr2_1:15826368-15826387 Msa0197650:intron 55.0%
TTCCTTGTGGGAGGGTGGAT+GGG + chr2_1:15826515-15826534 None:intergenic 55.0%
TTTCCTTGTGGGAGGGTGGA+TGG + chr2_1:15826516-15826535 None:intergenic 55.0%
TGACTTTCCTTGTGGGAGGG+TGG + chr2_1:15826520-15826539 None:intergenic 55.0%
GGTGGAATTCCTGGACCATC+TGG - chr2_1:15826953-15826972 Msa0197650:CDS 55.0%
GGAATTCCTGGACCATCTGG+AGG - chr2_1:15826956-15826975 Msa0197650:CDS 55.0%
TTCCTGGACCATCTGGAGGT+AGG - chr2_1:15826960-15826979 Msa0197650:CDS 55.0%
TCCTGGACCATCTGGAGGTA+GGG - chr2_1:15826961-15826980 Msa0197650:CDS 55.0%
! ATGGACTGCGAAGTGGTGGC+AGG + chr2_1:15825858-15825877 None:intergenic 60.0%
CGGGCTGTAAGCACGGAAGA+AGG - chr2_1:15826375-15826394 Msa0197650:intron 60.0%
TTCCCATCCACCCTCCCACA+AGG - chr2_1:15826510-15826529 Msa0197650:intron 60.0%
TCCCTACCTCCAGATGGTCC+AGG + chr2_1:15826965-15826984 None:intergenic 60.0%
GGACCATCTGGAGGTAGGGA+TGG - chr2_1:15826965-15826984 Msa0197650:CDS 60.0%
TAGGGATGGCCCTTCTGCTG+CGG - chr2_1:15826979-15826998 Msa0197650:exon 60.0%
GGGCCATCCCTACCTCCAGA+TGG + chr2_1:15826971-15826990 None:intergenic 65.0%
AGGGATGGCCCTTCTGCTGC+GGG - chr2_1:15826980-15826999 Msa0197650:exon 65.0%
AGCCTCCACCCGCAGCAGAA+GGG + chr2_1:15826991-15827010 None:intergenic 65.0%
GATGGCCCTTCTGCTGCGGG+TGG - chr2_1:15826983-15827002 Msa0197650:exon 70.0%
CAGCCTCCACCCGCAGCAGA+AGG + chr2_1:15826992-15827011 None:intergenic 70.0%
GGCCCTTCTGCTGCGGGTGG+AGG - chr2_1:15826986-15827005 Msa0197650:exon 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 15823349 15827285 15823349 ID=Msa0197650;Name=Msa0197650
chr2_1 mRNA 15823349 15827285 15823349 ID=Msa0197650-mRNA-1;Parent=Msa0197650;Name=Msa0197650-mRNA-1;_AED=0.08;_eAED=0.08;_QI=259|1|1|1|0.83|0.71|7|264|211
chr2_1 exon 15823349 15823705 15823349 ID=Msa0197650-mRNA-1:exon:6618;Parent=Msa0197650-mRNA-1
chr2_1 exon 15823938 15824006 15823938 ID=Msa0197650-mRNA-1:exon:6617;Parent=Msa0197650-mRNA-1
chr2_1 exon 15824164 15824368 15824164 ID=Msa0197650-mRNA-1:exon:6616;Parent=Msa0197650-mRNA-1
chr2_1 exon 15825025 15825107 15825025 ID=Msa0197650-mRNA-1:exon:6615;Parent=Msa0197650-mRNA-1
chr2_1 exon 15826065 15826204 15826065 ID=Msa0197650-mRNA-1:exon:6614;Parent=Msa0197650-mRNA-1
chr2_1 exon 15826949 15827016 15826949 ID=Msa0197650-mRNA-1:exon:6613;Parent=Msa0197650-mRNA-1
chr2_1 exon 15827049 15827285 15827049 ID=Msa0197650-mRNA-1:exon:6612;Parent=Msa0197650-mRNA-1
chr2_1 five_prime_UTR 15827049 15827285 15827049 ID=Msa0197650-mRNA-1:five_prime_utr;Parent=Msa0197650-mRNA-1
chr2_1 five_prime_UTR 15826995 15827016 15826995 ID=Msa0197650-mRNA-1:five_prime_utr;Parent=Msa0197650-mRNA-1
chr2_1 CDS 15826949 15826994 15826949 ID=Msa0197650-mRNA-1:cds;Parent=Msa0197650-mRNA-1
chr2_1 CDS 15826065 15826204 15826065 ID=Msa0197650-mRNA-1:cds;Parent=Msa0197650-mRNA-1
chr2_1 CDS 15825025 15825107 15825025 ID=Msa0197650-mRNA-1:cds;Parent=Msa0197650-mRNA-1
chr2_1 CDS 15824164 15824368 15824164 ID=Msa0197650-mRNA-1:cds;Parent=Msa0197650-mRNA-1
chr2_1 CDS 15823938 15824006 15823938 ID=Msa0197650-mRNA-1:cds;Parent=Msa0197650-mRNA-1
chr2_1 CDS 15823613 15823705 15823613 ID=Msa0197650-mRNA-1:cds;Parent=Msa0197650-mRNA-1
chr2_1 three_prime_UTR 15823349 15823612 15823349 ID=Msa0197650-mRNA-1:three_prime_utr;Parent=Msa0197650-mRNA-1
Gene Sequence

>Msa0197650

ATGTCTTACGCATACCTCTTCAAATACATCATCATCGGCGATACTGGAGTTGGAAAGTCATGTCTTCTACTTCAGTTCACTGATAAGCGCTTTCAACCTGTTCATGACTTGACCATCGGTGTTGAATTTGGTGCTAGGATGATCACCATCGATAACAAGCCAATCAAGTTGCAAATATGGGATACGGCGGGTCAAGAATCCTTCAGATCTATCACAAGGTCATATTACAGAGGAGCTGCAGGTGCACTGCTTGTTTATGATATAACCAGGAGGGAGACATTTAATCACTTAGCTAGCTGGTTGGAAGATGCAAGGCAGCATGCAAATGCAAATATGACAATTATGCTGATTGGCAACAAGTGTGATCTTGCTCACAGACGGGCTGTAAGCACGGAAGAAGGTGAACAGTTTGCAAAGGAGAACGGGTTGATTTTCATGGAGGCCTCAGCAAAAACTGCTCAGAATGTTGAAGAGGCATTCATAAAAACAGCTGGAACCATATACAAAAAGATTCAGGATGGAGTTTTTGATGTATCAAATGAGTCTTATGGAATAAAAGTAGGGTATGGTGGAATTCCTGGACCATCTGGAGGTAGGGATGGCCCTTCTGCTGCGGGTGGAGGCTGCTGCAGTTGA
Protein sequence

>Msa0197650

MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKENGLIFMEASAKTAQNVEEAFIKTAGTIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSAAGGGCCS*