Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615990 | XP_013457403.1 | 95.652 | 115 | 5 | 0 | 1 | 115 | 1 | 115 | 7.11e-53 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615990 | A0A072UNP9 | 95.652 | 115 | 5 | 0 | 1 | 115 | 1 | 115 | 3.40e-53 | 172 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037250 | Msa0615990 | 0.822953 | 1.797361e-53 | -8.615850e-47 |
| Msa0056470 | Msa0615990 | 0.818346 | 2.056368e-52 | -8.615850e-47 |
| Msa0083070 | Msa0615990 | 0.805531 | 1.276198e-49 | -8.615850e-47 |
| Msa0615990 | Msa0651050 | 0.843692 | 1.198723e-58 | -8.615850e-47 |
| Msa0615990 | Msa0698780 | 0.817019 | 4.097513e-52 | -8.615850e-47 |
| Msa0615990 | Msa0746420 | 0.808782 | 2.615309e-50 | -8.615850e-47 |
| Msa0615990 | Msa0858770 | 0.806612 | 7.560228e-50 | -8.615850e-47 |
| Msa0615990 | Msa1078270 | 0.809660 | 1.695778e-50 | -8.615850e-47 |
| Msa0615990 | Msa1130980 | 0.809448 | 1.883185e-50 | -8.615850e-47 |
| Msa0615990 | Msa1165940 | 0.835268 | 1.852100e-56 | -8.615850e-47 |
| Msa0615990 | Msa1169770 | 0.806374 | 8.486869e-50 | -8.615850e-47 |
| Msa0615990 | Msa1269790 | 0.815776 | 7.775148e-52 | -8.615850e-47 |
| Msa0615990 | Msa1338190 | 0.812434 | 4.247640e-51 | -8.615850e-47 |
| Msa0615990 | Msa1413260 | 0.815318 | 9.828612e-52 | -8.615850e-47 |
| Msa0615990 | Msa1418340 | 0.811069 | 8.418293e-51 | -8.615850e-47 |
| Msa0615990 | Msa1425670 | 0.811255 | 7.670195e-51 | -8.615850e-47 |
| Msa0615990 | Msa1450280 | 0.807677 | 4.496869e-50 | -8.615850e-47 |
| Msa0615990 | Msa1456050 | 0.814624 | 1.401042e-51 | -8.615850e-47 |
| Msa0125540 | Msa0615990 | 0.803025 | 4.244914e-49 | -8.615850e-47 |
| Msa0140820 | Msa0615990 | 0.803785 | 2.953470e-49 | -8.615850e-47 |
| Msa0146340 | Msa0615990 | 0.803597 | 3.231891e-49 | -8.615850e-47 |
| Msa0149190 | Msa0615990 | 0.800908 | 1.155956e-48 | -8.615850e-47 |
| Msa0149200 | Msa0615990 | 0.813981 | 1.943823e-51 | -8.615850e-47 |
| Msa0369450 | Msa0615990 | 0.833112 | 6.429032e-56 | -8.615850e-47 |
| Msa0380300 | Msa0615990 | 0.809582 | 1.762570e-50 | -8.615850e-47 |
| Msa0390030 | Msa0615990 | 0.812878 | 3.397479e-51 | -8.615850e-47 |
| Msa0521050 | Msa0615990 | 0.851461 | 8.743667e-61 | -8.615850e-47 |
| Msa0552810 | Msa0615990 | 0.801031 | 1.090611e-48 | -8.615850e-47 |
| Msa0573350 | Msa0615990 | 0.809628 | 1.722404e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615990 | MtrunA17_Chr4g0052901 | 95.652 | 115 | 5 | 0 | 1 | 115 | 1 | 115 | 6.54e-57 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGCTGCTCCTAAGCTTC+AGG | 0.303181 | 4_2:-65655066 | Msa0615990:CDS |
| CTTCAAGATCACATTGATAA+AGG | 0.323496 | 4_2:+65652395 | None:intergenic |
| GGTTGTTAGATTACCTGGTT+AGG | 0.333605 | 4_2:+65655311 | None:intergenic |
| TTGAAGCCTGTCGGTAGAAT+AGG | 0.372645 | 4_2:-65653809 | Msa0615990:CDS |
| CATATGTGACGCTTTCTACT+TGG | 0.404049 | 4_2:+65653725 | None:intergenic |
| ATACCATTAGCACTCACTAT+TGG | 0.405698 | 4_2:+65653699 | None:intergenic |
| TTGGCTTTGAATTACCATTC+CGG | 0.434854 | 4_2:+65653744 | None:intergenic |
| ATTCCAATAGTGAGTGCTAA+TGG | 0.435680 | 4_2:-65653702 | Msa0615990:intron |
| TTTCTATTGTAGGTGGGTCT+CGG | 0.435994 | 4_2:-65652638 | Msa0615990:intron |
| TGAAGCCTGTCGGTAGAATA+GGG | 0.439503 | 4_2:-65653808 | Msa0615990:CDS |
| CATGGCGTTGTTGTTGATAG+TGG | 0.439825 | 4_2:+65655004 | None:intergenic |
| GCTTCTTTCTTGTCATAGAA+AGG | 0.440776 | 4_2:+65655116 | None:intergenic |
| TTCTTCCCTATTCTACCGAC+AGG | 0.441878 | 4_2:+65653803 | None:intergenic |
| TATTCTACCGACAGGCTTCA+AGG | 0.456173 | 4_2:+65653811 | None:intergenic |
| ACTTCCATGGAAGTGGTTGA+TGG | 0.472045 | 4_2:+65655035 | None:intergenic |
| GTTGTTAGATTACCTGGTTA+GGG | 0.476702 | 4_2:+65655312 | None:intergenic |
| CGTCCCATCAACCACTTCCA+TGG | 0.478820 | 4_2:-65655039 | Msa0615990:CDS |
| GGGACGGAAACCTGAAGCTT+AGG | 0.481913 | 4_2:+65655056 | None:intergenic |
| CTAGTTAAGAGTTCATGTAC+TGG | 0.507270 | 4_2:-65652615 | Msa0615990:three_prime_UTR |
| CTTCCATGGAAGTGGTTGAT+GGG | 0.520177 | 4_2:+65655036 | None:intergenic |
| AAGAAGTTTAAAATGGCTAA+AGG | 0.520775 | 4_2:-65653773 | Msa0615990:CDS |
| AGTGGAAGTGGAAACTTCCA+TGG | 0.536646 | 4_2:+65655022 | None:intergenic |
| TGAGATCGAAGAGGGAGAAG+AGG | 0.542016 | 4_2:-65655169 | Msa0615990:CDS |
| GTCGCAATACATAATGAAGA+TGG | 0.543896 | 4_2:+65652533 | None:intergenic |
| CAAGATGTGGAGATGGCTGA+TGG | 0.544852 | 4_2:-65653851 | Msa0615990:intron |
| CTAATCCATGTTCTTGAATG+TGG | 0.554351 | 4_2:-65652474 | Msa0615990:three_prime_UTR |
| AGTGAATGCGAGAAGGAAAG+AGG | 0.561309 | 4_2:+65655346 | None:intergenic |
| GCTAAAGGCAACCGCCGGAA+TGG | 0.562871 | 4_2:-65653758 | Msa0615990:CDS |
| CACTATCAACAACAACGCCA+TGG | 0.564112 | 4_2:-65655003 | Msa0615990:CDS |
| AAATTCCACATTCAAGAACA+TGG | 0.565574 | 4_2:+65652469 | None:intergenic |
| CATGGAAGTGGTTGATGGGA+CGG | 0.567913 | 4_2:+65655040 | None:intergenic |
| TCACTAGTTTATAGTTCGCA+TGG | 0.573126 | 4_2:-65652442 | Msa0615990:three_prime_UTR |
| GTTGTTGTTGATAGTGGAAG+TGG | 0.580441 | 4_2:+65655010 | None:intergenic |
| AGTGGAAACTTCCATGGAAG+TGG | 0.602761 | 4_2:+65655028 | None:intergenic |
| GAAGTCAATGAGATCGAAGA+GGG | 0.602910 | 4_2:-65655177 | Msa0615990:CDS |
| TAGTTAAGAGTTCATGTACT+GGG | 0.604956 | 4_2:-65652614 | Msa0615990:three_prime_UTR |
| GCTTCGAAGTGAATGCGAGA+AGG | 0.605672 | 4_2:+65655339 | None:intergenic |
| ACTATCAACAACAACGCCAT+GGG | 0.608842 | 4_2:-65655002 | Msa0615990:intron |
| AAATGGCTAAAGGCAACCGC+CGG | 0.626265 | 4_2:-65653763 | Msa0615990:CDS |
| TATTGCGACTTCTATTAACA+CGG | 0.628538 | 4_2:-65652519 | Msa0615990:three_prime_UTR |
| ATTGCGACTTCTATTAACAC+GGG | 0.637170 | 4_2:-65652518 | Msa0615990:three_prime_UTR |
| AAGACTTCCTTGAAGCCTGT+CGG | 0.641141 | 4_2:-65653818 | Msa0615990:CDS |
| AACAGTGGTCATGAATTGAA+CGG | 0.649902 | 4_2:+65652590 | None:intergenic |
| CGAAGTCAATGAGATCGAAG+AGG | 0.658126 | 4_2:-65655178 | Msa0615990:CDS |
| TTCGAAGCTAAACCCTAACC+AGG | 0.676394 | 4_2:-65655324 | Msa0615990:intron |
| GCTTTGAATTACCATTCCGG+CGG | 0.686125 | 4_2:+65653747 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAATAATATAAAATT+GGG | + | chr4_2:65653706-65653725 | None:intergenic | 0.0% |
| !! | TAATTAAAATAATATAAAAT+TGG | + | chr4_2:65653707-65653726 | None:intergenic | 0.0% |
| !!! | ATTTATCCTATTTAAAATAT+TGG | + | chr4_2:65653013-65653032 | None:intergenic | 10.0% |
| !! | AATGAAATAAATAGAAGAAA+GGG | + | chr4_2:65652356-65652375 | None:intergenic | 15.0% |
| !! | AGTAATAATATATCTATCTA+TGG | + | chr4_2:65653199-65653218 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTAATTTCATAGT+TGG | - | chr4_2:65653518-65653537 | Msa0615990:intron | 15.0% |
| !! | ATTGAAAAAGAAGTTTAAAA+TGG | - | chr4_2:65653863-65653882 | Msa0615990:intron | 15.0% |
| !!! | TTTTGTGAAATTATTTAAGT+GGG | - | chr4_2:65654580-65654599 | Msa0615990:intron | 15.0% |
| !!! | TAACTTTTGTTGAATATATA+TGG | - | chr4_2:65655290-65655309 | Msa0615990:intron | 15.0% |
| !!! | AGATCGAAATATAATTTTAT+TGG | - | chr4_2:65655323-65655342 | Msa0615990:intron | 15.0% |
| !! | GAATGAAATAAATAGAAGAA+AGG | + | chr4_2:65652357-65652376 | None:intergenic | 20.0% |
| !! | GAAAATTGTATAAGTTAAAG+AGG | + | chr4_2:65652379-65652398 | None:intergenic | 20.0% |
| !! | GAAATTGAAAGAGTAAAAAA+TGG | - | chr4_2:65652442-65652461 | Msa0615990:three_prime_UTR | 20.0% |
| !! | TGAAATAAAAAAGGAAAAAG+TGG | + | chr4_2:65652669-65652688 | None:intergenic | 20.0% |
| !!! | TCCTTTTTTATTTCATTTTG+TGG | - | chr4_2:65652674-65652693 | Msa0615990:intron | 20.0% |
| !! | ACCACAAAATGAAATAAAAA+AGG | + | chr4_2:65652678-65652697 | None:intergenic | 20.0% |
| !! | TATTTACTTAGTACAAATGT+AGG | - | chr4_2:65652757-65652776 | Msa0615990:intron | 20.0% |
| !! | ATTTACTTAGTACAAATGTA+GGG | - | chr4_2:65652758-65652777 | Msa0615990:intron | 20.0% |
| !! | ATATATCTATCTATGGAATT+GGG | + | chr4_2:65653192-65653211 | None:intergenic | 20.0% |
| !! | AATATATCTATCTATGGAAT+TGG | + | chr4_2:65653193-65653212 | None:intergenic | 20.0% |
| !!! | AAAACAAAAATGGGTTTTTA+GGG | + | chr4_2:65653436-65653455 | None:intergenic | 20.0% |
| !! | ATAATCATAATAGCTTCAAA+AGG | + | chr4_2:65653467-65653486 | None:intergenic | 20.0% |
| !! | TTTAATTATGAATTGGCATT+TGG | - | chr4_2:65653719-65653738 | Msa0615990:exon | 20.0% |
| !! | CACGATAAAAAATAAAAATG+TGG | + | chr4_2:65653992-65654011 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCTTAAATCACA+TGG | + | chr4_2:65654112-65654131 | None:intergenic | 20.0% |
| !! | ATAGATATTTAACTAGTTCA+AGG | + | chr4_2:65654316-65654335 | None:intergenic | 20.0% |
| !!! | CTTAAATGGATATATTTTTC+TGG | - | chr4_2:65654472-65654491 | Msa0615990:intron | 20.0% |
| !!! | CTTTTGTGAAATTATTTAAG+TGG | - | chr4_2:65654579-65654598 | Msa0615990:intron | 20.0% |
| !! | TTTGTGAAATTATTTAAGTG+GGG | - | chr4_2:65654581-65654600 | Msa0615990:intron | 20.0% |
| !!! | TTATATTTTCCAAAAACTAG+AGG | - | chr4_2:65654616-65654635 | Msa0615990:intron | 20.0% |
| !!! | AATAAATTGTAACTGATTTG+TGG | + | chr4_2:65654682-65654701 | None:intergenic | 20.0% |
| !! | GTTACAATTTATTTGTTTGT+AGG | - | chr4_2:65654689-65654708 | Msa0615990:intron | 20.0% |
| !! | TTTATTTGTTTGTAGGTATT+TGG | - | chr4_2:65654696-65654715 | Msa0615990:intron | 20.0% |
| !! | TTTAATCAAAAATTGAACAG+TGG | + | chr4_2:65655071-65655090 | None:intergenic | 20.0% |
| ! | GCAAAAATCAACATTTACAA+TGG | - | chr4_2:65652783-65652802 | Msa0615990:intron | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+CGG | - | chr4_2:65652985-65653004 | Msa0615990:intron | 25.0% |
| ! | AACTACTAAAACACTAAAAG+TGG | + | chr4_2:65653111-65653130 | None:intergenic | 25.0% |
| ! | ATAGTCCTTTCAAATTGAAT+TGG | - | chr4_2:65653362-65653381 | Msa0615990:intron | 25.0% |
| ! | TAGTCCTTTCAAATTGAATT+GGG | - | chr4_2:65653363-65653382 | Msa0615990:intron | 25.0% |
| ! | AAAACCCAATTCAATTTGAA+AGG | + | chr4_2:65653370-65653389 | None:intergenic | 25.0% |
| !!! | GAAAACAAAAATGGGTTTTT+AGG | + | chr4_2:65653437-65653456 | None:intergenic | 25.0% |
| ! | GCTTAGAAGAAAACAAAAAT+GGG | + | chr4_2:65653445-65653464 | None:intergenic | 25.0% |
| ! | TTCAAAAGGAAAAACAACAA+AGG | + | chr4_2:65653584-65653603 | None:intergenic | 25.0% |
| !!! | GTTTTTGAATTTTCAAGATG+TGG | - | chr4_2:65653779-65653798 | Msa0615990:CDS | 25.0% |
| !! | AAGAAGTTTAAAATGGCTAA+AGG | - | chr4_2:65653870-65653889 | Msa0615990:intron | 25.0% |
| ! | ATAAAAATGTGGCAGAAAAT+AGG | + | chr4_2:65653981-65654000 | None:intergenic | 25.0% |
| ! | TACATGAGTAAAGAAAACTA+AGG | + | chr4_2:65654032-65654051 | None:intergenic | 25.0% |
| !! | GTCCAAGCTATATAAATTTT+GGG | + | chr4_2:65654214-65654233 | None:intergenic | 25.0% |
| !! | TGTCCAAGCTATATAAATTT+TGG | + | chr4_2:65654215-65654234 | None:intergenic | 25.0% |
| !! | CTATTGCATCATTTTATTGT+CGG | - | chr4_2:65654332-65654351 | Msa0615990:intron | 25.0% |
| !!! | TTTTATTGTCGGTTAAACTT+CGG | - | chr4_2:65654343-65654362 | Msa0615990:intron | 25.0% |
| ! | ATGTAATTCTGTAGCTTAAA+TGG | - | chr4_2:65654458-65654477 | Msa0615990:intron | 25.0% |
| !! | AAAAGTTACTTTCATTGTTG+AGG | + | chr4_2:65654564-65654583 | None:intergenic | 25.0% |
| ! | GATTGTTTATCTGATTCATT+AGG | - | chr4_2:65654721-65654740 | Msa0615990:intron | 25.0% |
| ! | GGATAAGTTAAAAAGAGTAA+AGG | + | chr4_2:65654847-65654866 | None:intergenic | 25.0% |
| ! | TTGTTTGTTGAAATTGAAGC+AGG | - | chr4_2:65652414-65652433 | Msa0615990:three_prime_UTR | 30.0% |
| ! | GTGTTATGTCTTTAGTTTAG+CGG | - | chr4_2:65652696-65652715 | Msa0615990:intron | 30.0% |
| AAAAATAAGCCAATCGAAAC+GGG | + | chr4_2:65652810-65652829 | None:intergenic | 30.0% | |
| CAAAAATAAGCCAATCGAAA+CGG | + | chr4_2:65652811-65652830 | None:intergenic | 30.0% | |
| TGTTATTCATAAGCTTGTCA+AGG | + | chr4_2:65652937-65652956 | None:intergenic | 30.0% | |
| AAAAATAAGCCAATCCAAAC+GGG | - | chr4_2:65652986-65653005 | Msa0615990:intron | 30.0% | |
| ! | TTTAAAATATTGGACCCGTT+TGG | + | chr4_2:65653003-65653022 | None:intergenic | 30.0% |
| !! | ACGGGTCCAATATTTTAAAT+AGG | - | chr4_2:65653004-65653023 | Msa0615990:intron | 30.0% |
| ! | CCATCACTCATTTTCTATAA+GGG | + | chr4_2:65653054-65653073 | None:intergenic | 30.0% |
| ! | TCCATCACTCATTTTCTATA+AGG | + | chr4_2:65653055-65653074 | None:intergenic | 30.0% |
| !!! | TTGTGTTGTTTGTTTTGGAA+GGG | + | chr4_2:65653229-65653248 | None:intergenic | 30.0% |
| !!! | TTTGTGTTGTTTGTTTTGGA+AGG | + | chr4_2:65653230-65653249 | None:intergenic | 30.0% |
| !!! | CTTGTTTGTGTTGTTTGTTT+TGG | + | chr4_2:65653234-65653253 | None:intergenic | 30.0% |
| GAAAGAGAAAGAGAAAAAGA+AGG | + | chr4_2:65653338-65653357 | None:intergenic | 30.0% | |
| GGCTTAGAAGAAAACAAAAA+TGG | + | chr4_2:65653446-65653465 | None:intergenic | 30.0% | |
| ! | TTTCATAGTTGGAGTTTTCT+TGG | - | chr4_2:65653529-65653548 | Msa0615990:intron | 30.0% |
| ATTCTCATACATAAAGGTGA+TGG | + | chr4_2:65654055-65654074 | None:intergenic | 30.0% | |
| GTAGAGATTCTCATACATAA+AGG | + | chr4_2:65654061-65654080 | None:intergenic | 30.0% | |
| ! | GTAGTGGAATAAGTAAGTTA+TGG | - | chr4_2:65654159-65654178 | Msa0615990:intron | 30.0% |
| CTCCCAAAATTTATATAGCT+TGG | - | chr4_2:65654209-65654228 | Msa0615990:intron | 30.0% | |
| TATTTAACTAGTTCAAGGCT+TGG | + | chr4_2:65654311-65654330 | None:intergenic | 30.0% | |
| AGTACTAATGCTAAGTGAAA+GGG | + | chr4_2:65654421-65654440 | None:intergenic | 30.0% | |
| !!! | CCTTTAATACCTCTAGTTTT+TGG | + | chr4_2:65654628-65654647 | None:intergenic | 30.0% |
| !! | CCAAAAACTAGAGGTATTAA+AGG | - | chr4_2:65654625-65654644 | Msa0615990:intron | 30.0% |
| ATTTGTTTGTAGGTATTTGG+AGG | - | chr4_2:65654699-65654718 | Msa0615990:intron | 30.0% | |
| TAATAGCTGTGTATCAAATC+TGG | - | chr4_2:65654776-65654795 | Msa0615990:intron | 30.0% | |
| CAAACCAAAGTATGGTAAAA+AGG | + | chr4_2:65654874-65654893 | None:intergenic | 30.0% | |
| GTAATTGTCAAACCAAAGTA+TGG | + | chr4_2:65654882-65654901 | None:intergenic | 30.0% | |
| !! | TTTGGTTTGACAATTACTGA+CGG | - | chr4_2:65654885-65654904 | Msa0615990:intron | 30.0% |
| CTTTGATACCTTTCTATTGT+AGG | - | chr4_2:65654995-65655014 | Msa0615990:intron | 30.0% | |
| TAGTTAAGAGTTCATGTACT+GGG | - | chr4_2:65655029-65655048 | Msa0615990:CDS | 30.0% | |
| TATTGCGACTTCTATTAACA+CGG | - | chr4_2:65655124-65655143 | Msa0615990:CDS | 30.0% | |
| AAATTCCACATTCAAGAACA+TGG | + | chr4_2:65655177-65655196 | None:intergenic | 30.0% | |
| CTTCAAGATCACATTGATAA+AGG | + | chr4_2:65655251-65655270 | None:intergenic | 30.0% | |
| GTTGTTAGATTACCTGGTTA+GGG | + | chr4_2:65652334-65652353 | None:intergenic | 35.0% | |
| GCTTCTTTCTTGTCATAGAA+AGG | + | chr4_2:65652530-65652549 | None:intergenic | 35.0% | |
| CCCTTATAGAAAATGAGTGA+TGG | - | chr4_2:65653051-65653070 | Msa0615990:intron | 35.0% | |
| ACACTAAAAGTGGAGAACAA+AGG | + | chr4_2:65653101-65653120 | None:intergenic | 35.0% | |
| AACAACACAAACAAGAAGCT+TGG | - | chr4_2:65653239-65653258 | Msa0615990:intron | 35.0% | |
| ! | TGCCAATACCTTTTCATCAA+AGG | - | chr4_2:65653275-65653294 | Msa0615990:intron | 35.0% |
| ! | GCCAATACCTTTTCATCAAA+GGG | - | chr4_2:65653276-65653295 | Msa0615990:intron | 35.0% |
| ! | CCAATACCTTTTCATCAAAG+GGG | - | chr4_2:65653277-65653296 | Msa0615990:intron | 35.0% |
| !! | TTTTGAAAGATCTGTCACAG+TGG | + | chr4_2:65653396-65653415 | None:intergenic | 35.0% |
| !! | GAATTTTCAAGATGTGGAGA+TGG | - | chr4_2:65653785-65653804 | Msa0615990:CDS | 35.0% |
| !! | TTGGCTTTGAATTACCATTC+CGG | + | chr4_2:65653902-65653921 | None:intergenic | 35.0% |
| ATTCCAATAGTGAGTGCTAA+TGG | - | chr4_2:65653941-65653960 | Msa0615990:intron | 35.0% | |
| ATACCATTAGCACTCACTAT+TGG | + | chr4_2:65653947-65653966 | None:intergenic | 35.0% | |
| CTAAGGCATGAAATATGCAA+TGG | + | chr4_2:65654015-65654034 | None:intergenic | 35.0% | |
| TTACTTATTCCACTACTGAC+AGG | + | chr4_2:65654155-65654174 | None:intergenic | 35.0% | |
| GTGGAATAAGTAAGTTATGG+TGG | - | chr4_2:65654162-65654181 | Msa0615990:intron | 35.0% | |
| ! | TTAAGTTACAGGGCATTTAG+GGG | + | chr4_2:65654272-65654291 | None:intergenic | 35.0% |
| ! | GTTAAGTTACAGGGCATTTA+GGG | + | chr4_2:65654273-65654292 | None:intergenic | 35.0% |
| GAGTACTAATGCTAAGTGAA+AGG | + | chr4_2:65654422-65654441 | None:intergenic | 35.0% | |
| AAAGTATGGTAAAAAGGACG+AGG | + | chr4_2:65654868-65654887 | None:intergenic | 35.0% | |
| ! | TCGTCCTTTTTACCATACTT+TGG | - | chr4_2:65654867-65654886 | Msa0615990:intron | 35.0% |
| ! | TTGGTTTGACAATTACTGAC+GGG | - | chr4_2:65654886-65654905 | Msa0615990:intron | 35.0% |
| !! | GATGTTGTGCAGTTTTAATG+AGG | + | chr4_2:65654927-65654946 | None:intergenic | 35.0% |
| TGATACCTTTCTATTGTAGG+TGG | - | chr4_2:65654998-65655017 | Msa0615990:intron | 35.0% | |
| GATACCTTTCTATTGTAGGT+GGG | - | chr4_2:65654999-65655018 | Msa0615990:intron | 35.0% | |
| CTAGTTAAGAGTTCATGTAC+TGG | - | chr4_2:65655028-65655047 | Msa0615990:CDS | 35.0% | |
| AACAGTGGTCATGAATTGAA+CGG | + | chr4_2:65655056-65655075 | None:intergenic | 35.0% | |
| GTCGCAATACATAATGAAGA+TGG | + | chr4_2:65655113-65655132 | None:intergenic | 35.0% | |
| ATTGCGACTTCTATTAACAC+GGG | - | chr4_2:65655125-65655144 | Msa0615990:CDS | 35.0% | |
| CTAATCCATGTTCTTGAATG+TGG | - | chr4_2:65655169-65655188 | Msa0615990:CDS | 35.0% | |
| ! | TCACTAGTTTATAGTTCGCA+TGG | - | chr4_2:65655201-65655220 | Msa0615990:exon | 35.0% |
| GGTTGTTAGATTACCTGGTT+AGG | + | chr4_2:65652335-65652354 | None:intergenic | 40.0% | |
| GAAAGGGTTGTTAGATTACC+TGG | + | chr4_2:65652340-65652359 | None:intergenic | 40.0% | |
| GTTGAAATTGAAGCAGGAAG+TGG | - | chr4_2:65652420-65652439 | Msa0615990:three_prime_UTR | 40.0% | |
| GAAGTCAATGAGATCGAAGA+GGG | - | chr4_2:65652466-65652485 | Msa0615990:three_prime_UTR | 40.0% | |
| !! | GTTGTTGTTGATAGTGGAAG+TGG | + | chr4_2:65652636-65652655 | None:intergenic | 40.0% |
| ACTATCAACAACAACGCCAT+GGG | - | chr4_2:65652641-65652660 | Msa0615990:intron | 40.0% | |
| AAAGGAAAAAGTGGTACCCA+TGG | + | chr4_2:65652660-65652679 | None:intergenic | 40.0% | |
| AATATTGGACCCGTTTGGAT+TGG | + | chr4_2:65652998-65653017 | None:intergenic | 40.0% | |
| TAATCACTGCCCTACTCTTT+CGG | + | chr4_2:65653142-65653161 | None:intergenic | 40.0% | |
| ACAAGAAGCTTGGAACTTGA+AGG | - | chr4_2:65653249-65653268 | Msa0615990:intron | 40.0% | |
| ! | CCCCTTTGATGAAAAGGTAT+TGG | + | chr4_2:65653280-65653299 | None:intergenic | 40.0% |
| ! | ACCTTTTCATCAAAGGGGTT+TGG | - | chr4_2:65653282-65653301 | Msa0615990:intron | 40.0% |
| !!! | GGCACTGATTTTGTTTTTGC+CGG | - | chr4_2:65653550-65653569 | Msa0615990:intron | 40.0% |
| !!! | GCACTGATTTTGTTTTTGCC+GGG | - | chr4_2:65653551-65653570 | Msa0615990:intron | 40.0% |
| !!! | CACTGATTTTGTTTTTGCCG+GGG | - | chr4_2:65653552-65653571 | Msa0615990:intron | 40.0% |
| !!! | AACAACAAAGGTGTTTTCCC+CGG | + | chr4_2:65653572-65653591 | None:intergenic | 40.0% |
| !! | TTCCTTTTGAAGATTCAGCG+CGG | - | chr4_2:65653593-65653612 | Msa0615990:intron | 40.0% |
| TTCGTTGGAGTAGTCAATCA+CGG | + | chr4_2:65653641-65653660 | None:intergenic | 40.0% | |
| ATAAAACACGCTGTCTTCGT+TGG | + | chr4_2:65653656-65653675 | None:intergenic | 40.0% | |
| TGAATTGGCATTTGGTTGCT+TGG | - | chr4_2:65653727-65653746 | Msa0615990:CDS | 40.0% | |
| CATATGTGACGCTTTCTACT+TGG | + | chr4_2:65653921-65653940 | None:intergenic | 40.0% | |
| CACTACTGACAGGATAAAGA+TGG | + | chr4_2:65654145-65654164 | None:intergenic | 40.0% | |
| CATCTTTATCCTGTCAGTAG+TGG | - | chr4_2:65654143-65654162 | Msa0615990:intron | 40.0% | |
| TTTGGGAGCAGCATATGTAA+TGG | + | chr4_2:65654197-65654216 | None:intergenic | 40.0% | |
| ! | GGTTAAGTTACAGGGCATTT+AGG | + | chr4_2:65654274-65654293 | None:intergenic | 40.0% |
| CTGGCAGTATTTAGGAACTA+AGG | + | chr4_2:65654512-65654531 | None:intergenic | 40.0% | |
| ! | CAAATGTGCTGGCAGTATTT+AGG | + | chr4_2:65654520-65654539 | None:intergenic | 40.0% |
| AGGTATTAAAGGAAAAGCCG+AGG | - | chr4_2:65654636-65654655 | Msa0615990:intron | 40.0% | |
| GGTATTAAAGGAAAAGCCGA+GGG | - | chr4_2:65654637-65654656 | Msa0615990:intron | 40.0% | |
| TTTCTATTGTAGGTGGGTCT+CGG | - | chr4_2:65655005-65655024 | Msa0615990:CDS | 40.0% | |
| TTCGAAGCTAAACCCTAACC+AGG | - | chr4_2:65652319-65652338 | Msa0615990:three_prime_UTR | 45.0% | |
| CGAAGTCAATGAGATCGAAG+AGG | - | chr4_2:65652465-65652484 | Msa0615990:three_prime_UTR | 45.0% | |
| CTTCCATGGAAGTGGTTGAT+GGG | + | chr4_2:65652610-65652629 | None:intergenic | 45.0% | |
| ACTTCCATGGAAGTGGTTGA+TGG | + | chr4_2:65652611-65652630 | None:intergenic | 45.0% | |
| AGTGGAAACTTCCATGGAAG+TGG | + | chr4_2:65652618-65652637 | None:intergenic | 45.0% | |
| AGTGGAAGTGGAAACTTCCA+TGG | + | chr4_2:65652624-65652643 | None:intergenic | 45.0% | |
| ! | CATGGCGTTGTTGTTGATAG+TGG | + | chr4_2:65652642-65652661 | None:intergenic | 45.0% |
| CACTATCAACAACAACGCCA+TGG | - | chr4_2:65652640-65652659 | Msa0615990:intron | 45.0% | |
| TACAATGGACCCGTTTCGAT+TGG | - | chr4_2:65652798-65652817 | Msa0615990:intron | 45.0% | |
| GGCAGTGATTAGAAAGAGAG+AGG | - | chr4_2:65653151-65653170 | Msa0615990:intron | 45.0% | |
| GCCAAACCCCTTTGATGAAA+AGG | + | chr4_2:65653286-65653305 | None:intergenic | 45.0% | |
| ! | TCATCAAAGGGGTTTGGCTT+TGG | - | chr4_2:65653288-65653307 | Msa0615990:intron | 45.0% |
| AAGACTTCCTTGAAGCCTGT+CGG | - | chr4_2:65653825-65653844 | Msa0615990:CDS | 45.0% | |
| TATTCTACCGACAGGCTTCA+AGG | + | chr4_2:65653835-65653854 | None:intergenic | 45.0% | |
| TTGAAGCCTGTCGGTAGAAT+AGG | - | chr4_2:65653834-65653853 | Msa0615990:CDS | 45.0% | |
| TGAAGCCTGTCGGTAGAATA+GGG | - | chr4_2:65653835-65653854 | Msa0615990:CDS | 45.0% | |
| TTCTTCCCTATTCTACCGAC+AGG | + | chr4_2:65653843-65653862 | None:intergenic | 45.0% | |
| ! | GCTTTGAATTACCATTCCGG+CGG | + | chr4_2:65653899-65653918 | None:intergenic | 45.0% |
| GGTGTGGAGGTTAAGTTACA+GGG | + | chr4_2:65654282-65654301 | None:intergenic | 45.0% | |
| TGGTGTGGAGGTTAAGTTAC+AGG | + | chr4_2:65654283-65654302 | None:intergenic | 45.0% | |
| TAGTTCAAGGCTTGGCACAA+TGG | + | chr4_2:65654303-65654322 | None:intergenic | 45.0% | |
| TACTGCCAGCACATTTGACT+CGG | - | chr4_2:65654523-65654542 | Msa0615990:intron | 45.0% | |
| GAGACCCACCTACAATAGAA+AGG | + | chr4_2:65655006-65655025 | None:intergenic | 45.0% | |
| !!! | ATATTATTTTAATTATGAAT+TGG | - | chr4_2:65653712-65653731 | Msa0615990:exon | 5.0% |
| GCTTCGAAGTGAATGCGAGA+AGG | + | chr4_2:65652307-65652326 | None:intergenic | 50.0% | |
| TGAGATCGAAGAGGGAGAAG+AGG | - | chr4_2:65652474-65652493 | Msa0615990:three_prime_UTR | 50.0% | |
| TCTTGCTGCTCCTAAGCTTC+AGG | - | chr4_2:65652577-65652596 | Msa0615990:three_prime_UTR | 50.0% | |
| !! | CATGGAAGTGGTTGATGGGA+CGG | + | chr4_2:65652606-65652625 | None:intergenic | 50.0% |
| ! | TTTTGCCGAGCCGAAAGAGT+AGG | - | chr4_2:65653129-65653148 | Msa0615990:intron | 50.0% |
| TTTGCCGAGCCGAAAGAGTA+GGG | - | chr4_2:65653130-65653149 | Msa0615990:intron | 50.0% | |
| AGAAAGAGAGAGGACTCGTG+TGG | - | chr4_2:65653161-65653180 | Msa0615990:intron | 50.0% | |
| GAAAGAGAGAGGACTCGTGT+GGG | - | chr4_2:65653162-65653181 | Msa0615990:intron | 50.0% | |
| GTCCGCGCTGAATCTTCAAA+AGG | + | chr4_2:65653598-65653617 | None:intergenic | 50.0% | |
| CAAGATGTGGAGATGGCTGA+TGG | - | chr4_2:65653792-65653811 | Msa0615990:CDS | 50.0% | |
| AAATGGCTAAAGGCAACCGC+CGG | - | chr4_2:65653880-65653899 | Msa0615990:intron | 50.0% | |
| GACAACCGAGTCAAATGTGC+TGG | + | chr4_2:65654531-65654550 | None:intergenic | 50.0% | |
| GGGACGGAAACCTGAAGCTT+AGG | + | chr4_2:65652590-65652609 | None:intergenic | 55.0% | |
| CGTCCCATCAACCACTTCCA+TGG | - | chr4_2:65652604-65652623 | Msa0615990:three_prime_UTR | 55.0% | |
| ACTGCCCTACTCTTTCGGCT+CGG | + | chr4_2:65653137-65653156 | None:intergenic | 55.0% | |
| CAAGGCTTGGCACAATGGTG+TGG | + | chr4_2:65654298-65654317 | None:intergenic | 55.0% | |
| GCCAACGTATTCAGAGCCCT+CGG | + | chr4_2:65654656-65654675 | None:intergenic | 55.0% | |
| GCTAAAGGCAACCGCCGGAA+TGG | - | chr4_2:65653885-65653904 | Msa0615990:intron | 60.0% | |
| GGCTTGGCACAATGGTGTGG+AGG | + | chr4_2:65654295-65654314 | None:intergenic | 60.0% | |
| !! | GCCGAGGGCTCTGAATACGT+TGG | - | chr4_2:65654652-65654671 | Msa0615990:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 65652300 | 65655365 | 65652300 | ID=Msa0615990;Name=Msa0615990 |
| chr4_2 | mRNA | 65652300 | 65655365 | 65652300 | ID=Msa0615990-mRNA-1;Parent=Msa0615990;Name=Msa0615990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=66|1|1|1|0.33|0|4|370|115 |
| chr4_2 | exon | 65652300 | 65652648 | 65652300 | ID=Msa0615990-mRNA-1:exon:18610;Parent=Msa0615990-mRNA-1 |
| chr4_2 | exon | 65653703 | 65653869 | 65653703 | ID=Msa0615990-mRNA-1:exon:18609;Parent=Msa0615990-mRNA-1 |
| chr4_2 | exon | 65655003 | 65655229 | 65655003 | ID=Msa0615990-mRNA-1:exon:18608;Parent=Msa0615990-mRNA-1 |
| chr4_2 | exon | 65655325 | 65655365 | 65655325 | ID=Msa0615990-mRNA-1:exon:18607;Parent=Msa0615990-mRNA-1 |
| chr4_2 | five_prime_UTR | 65655325 | 65655365 | 65655325 | ID=Msa0615990-mRNA-1:five_prime_utr;Parent=Msa0615990-mRNA-1 |
| chr4_2 | five_prime_UTR | 65655205 | 65655229 | 65655205 | ID=Msa0615990-mRNA-1:five_prime_utr;Parent=Msa0615990-mRNA-1 |
| chr4_2 | CDS | 65655003 | 65655204 | 65655003 | ID=Msa0615990-mRNA-1:cds;Parent=Msa0615990-mRNA-1 |
| chr4_2 | CDS | 65653724 | 65653869 | 65653724 | ID=Msa0615990-mRNA-1:cds;Parent=Msa0615990-mRNA-1 |
| chr4_2 | three_prime_UTR | 65653703 | 65653723 | 65653703 | ID=Msa0615990-mRNA-1:three_prime_utr;Parent=Msa0615990-mRNA-1 |
| chr4_2 | three_prime_UTR | 65652300 | 65652648 | 65652300 | ID=Msa0615990-mRNA-1:three_prime_utr;Parent=Msa0615990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
