Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0390030 | XP_024630973.1 | 97.283 | 184 | 2 | 1 | 1 | 181 | 7 | 190 | 2.44e-113 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0390030 | sp|O81126|RSZ22_ARATH | 69.072 | 194 | 47 | 3 | 1 | 181 | 7 | 200 | 6.44e-66 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0390030 | A0A396JEY3 | 97.283 | 184 | 2 | 1 | 1 | 181 | 7 | 190 | 1.17e-113 | 330 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027260 | Msa0390030 | 0.809090 | 2.246553e-50 | -8.615850e-47 |
| Msa0029630 | Msa0390030 | 0.803813 | 2.914061e-49 | -8.615850e-47 |
| Msa0032260 | Msa0390030 | 0.813971 | 1.953386e-51 | -8.615850e-47 |
| Msa0037250 | Msa0390030 | 0.828328 | 9.554175e-55 | -8.615850e-47 |
| Msa0048180 | Msa0390030 | 0.807967 | 3.902505e-50 | -8.615850e-47 |
| Msa0055180 | Msa0390030 | 0.800819 | 1.204885e-48 | -8.615850e-47 |
| Msa0056430 | Msa0390030 | 0.805649 | 1.205287e-49 | -8.615850e-47 |
| Msa0056470 | Msa0390030 | 0.883956 | 2.891118e-71 | -8.615850e-47 |
| Msa0064350 | Msa0390030 | 0.806210 | 9.188677e-50 | -8.615850e-47 |
| Msa0064380 | Msa0390030 | 0.803619 | 3.197117e-49 | -8.615850e-47 |
| Msa0082280 | Msa0390030 | 0.847882 | 8.731089e-60 | -8.615850e-47 |
| Msa0094470 | Msa0390030 | 0.808882 | 2.489450e-50 | -8.615850e-47 |
| Msa0100740 | Msa0390030 | 0.803173 | 3.954884e-49 | -8.615850e-47 |
| Msa0115990 | Msa0390030 | 0.831171 | 1.941655e-55 | -8.615850e-47 |
| Msa0125450 | Msa0390030 | 0.824442 | 8.055039e-54 | -8.615850e-47 |
| Msa0125540 | Msa0390030 | 0.836033 | 1.186320e-56 | -8.615850e-47 |
| Msa0128860 | Msa0390030 | 0.837553 | 4.856816e-57 | -8.615850e-47 |
| Msa0140650 | Msa0390030 | 0.826858 | 2.153589e-54 | -8.615850e-47 |
| Msa0140820 | Msa0390030 | 0.817167 | 3.794629e-52 | -8.615850e-47 |
| Msa0149190 | Msa0390030 | 0.976924 | 9.135004e-143 | -8.615850e-47 |
| Msa0149200 | Msa0390030 | 0.849369 | 3.380077e-60 | -8.615850e-47 |
| Msa0149230 | Msa0390030 | 0.893201 | 7.838461e-75 | -8.615850e-47 |
| Msa0165950 | Msa0390030 | 0.806104 | 9.671025e-50 | -8.615850e-47 |
| Msa0174730 | Msa0390030 | 0.835704 | 1.437254e-56 | -8.615850e-47 |
| Msa0174770 | Msa0390030 | 0.830759 | 2.450366e-55 | -8.615850e-47 |
| Msa0187930 | Msa0390030 | 0.815887 | 7.341208e-52 | -8.615850e-47 |
| Msa0194540 | Msa0390030 | 0.815220 | 1.033462e-51 | -8.615850e-47 |
| Msa0199690 | Msa0390030 | 0.813868 | 2.058114e-51 | -8.615850e-47 |
| Msa0199880 | Msa0390030 | 0.833928 | 4.021965e-56 | -8.615850e-47 |
| Msa0211840 | Msa0390030 | 0.803758 | 2.992306e-49 | -8.615850e-47 |
| Msa0366890 | Msa0390030 | 0.813294 | 2.752547e-51 | -8.615850e-47 |
| Msa0369450 | Msa0390030 | 0.831349 | 1.755225e-55 | -8.615850e-47 |
| Msa0376690 | Msa0390030 | 0.808272 | 3.360741e-50 | -8.615850e-47 |
| Msa0378490 | Msa0390030 | 0.824652 | 7.188480e-54 | -8.615850e-47 |
| Msa0380300 | Msa0390030 | 0.811113 | 8.235407e-51 | -8.615850e-47 |
| Msa0390030 | Msa0414800 | 0.834186 | 3.466495e-56 | -8.615850e-47 |
| Msa0390030 | Msa0427150 | 0.843428 | 1.409753e-58 | -8.615850e-47 |
| Msa0390030 | Msa0432210 | 0.847591 | 1.049944e-59 | -8.615850e-47 |
| Msa0390030 | Msa0443390 | 0.816383 | 5.690397e-52 | -8.615850e-47 |
| Msa0390030 | Msa0471440 | 0.853076 | 3.035208e-61 | -8.615850e-47 |
| Msa0390030 | Msa0471590 | 0.837604 | 4.711689e-57 | -8.615850e-47 |
| Msa0390030 | Msa0481480 | 0.819536 | 1.103024e-52 | -8.615850e-47 |
| Msa0390030 | Msa0518390 | 0.801450 | 8.951471e-49 | -8.615850e-47 |
| Msa0390030 | Msa0518450 | 0.801188 | 1.012812e-48 | -8.615850e-47 |
| Msa0390030 | Msa0521050 | 0.874410 | 6.904290e-68 | -8.615850e-47 |
| Msa0390030 | Msa0526540 | 0.801098 | 1.057003e-48 | -8.615850e-47 |
| Msa0390030 | Msa0552810 | 0.850540 | 1.589772e-60 | -8.615850e-47 |
| Msa0390030 | Msa0556060 | 0.805449 | 1.327703e-49 | -8.615850e-47 |
| Msa0390030 | Msa0566700 | 0.809999 | 1.433570e-50 | -8.615850e-47 |
| Msa0390030 | Msa0573350 | 0.809546 | 1.793634e-50 | -8.615850e-47 |
| Msa0390030 | Msa0576940 | 0.800418 | 1.455038e-48 | -8.615850e-47 |
| Msa0390030 | Msa0581070 | 0.839736 | 1.325932e-57 | -8.615850e-47 |
| Msa0390030 | Msa0581110 | 0.835035 | 2.120818e-56 | -8.615850e-47 |
| Msa0390030 | Msa0615990 | 0.812878 | 3.397479e-51 | -8.615850e-47 |
| Msa0390030 | Msa0622960 | 0.820834 | 5.563630e-53 | -8.615850e-47 |
| Msa0390030 | Msa0650920 | 0.808991 | 2.359473e-50 | -8.615850e-47 |
| Msa0390030 | Msa0651050 | 0.858106 | 1.034487e-62 | -8.615850e-47 |
| Msa0390030 | Msa0661300 | 0.871504 | 6.497961e-67 | -8.615850e-47 |
| Msa0390030 | Msa0687630 | 0.843928 | 1.036093e-58 | -8.615850e-47 |
| Msa0390030 | Msa0692840 | 0.829438 | 5.147451e-55 | -8.615850e-47 |
| Msa0390030 | Msa0692940 | 0.843434 | 1.404306e-58 | -8.615850e-47 |
| Msa0390030 | Msa0698780 | 0.812872 | 3.406263e-51 | -8.615850e-47 |
| Msa0390030 | Msa0784200 | 0.823833 | 1.119437e-53 | -8.615850e-47 |
| Msa0390030 | Msa0818310 | 0.821221 | 4.530031e-53 | -8.615850e-47 |
| Msa0390030 | Msa0842830 | 0.815111 | 1.092844e-51 | -8.615850e-47 |
| Msa0390030 | Msa0858770 | 0.830948 | 2.202458e-55 | -8.615850e-47 |
| Msa0390030 | Msa0881270 | 0.802864 | 4.583395e-49 | -8.615850e-47 |
| Msa0390030 | Msa0966270 | 0.801168 | 1.022472e-48 | -8.615850e-47 |
| Msa0390030 | Msa0968590 | 0.813837 | 2.090862e-51 | -8.615850e-47 |
| Msa0390030 | Msa1019240 | 0.840429 | 8.740750e-58 | -8.615850e-47 |
| Msa0390030 | Msa1019260 | 0.855241 | 7.201630e-62 | -8.615850e-47 |
| Msa0390030 | Msa1081150 | 0.820809 | 5.636146e-53 | -8.615850e-47 |
| Msa0390030 | Msa1104140 | 0.824113 | 9.623338e-54 | -8.615850e-47 |
| Msa0390030 | Msa1104210 | 0.835541 | 1.579983e-56 | -8.615850e-47 |
| Msa0390030 | Msa1126510 | 0.858454 | 8.150370e-63 | -8.615850e-47 |
| Msa0390030 | Msa1126770 | 0.847915 | 8.550056e-60 | -8.615850e-47 |
| Msa0390030 | Msa1126830 | 0.837564 | 4.825171e-57 | -8.615850e-47 |
| Msa0390030 | Msa1130980 | 0.815842 | 7.515007e-52 | -8.615850e-47 |
| Msa0390030 | Msa1165940 | 0.870033 | 1.980691e-66 | -8.615850e-47 |
| Msa0390030 | Msa1166860 | 0.858263 | 9.286091e-63 | -8.615850e-47 |
| Msa0390030 | Msa1184370 | 0.801393 | 9.195644e-49 | -8.615850e-47 |
| Msa0390030 | Msa1207270 | 0.805617 | 1.224130e-49 | -8.615850e-47 |
| Msa0390030 | Msa1218600 | 0.800227 | 1.590708e-48 | -8.615850e-47 |
| Msa0390030 | Msa1227690 | 0.810662 | 1.031079e-50 | -8.615850e-47 |
| Msa0390030 | Msa1257510 | 0.826618 | 2.457654e-54 | -8.615850e-47 |
| Msa0390030 | Msa1307950 | 0.836016 | 1.197724e-56 | -8.615850e-47 |
| Msa0390030 | Msa1321630 | 0.808356 | 3.224958e-50 | -8.615850e-47 |
| Msa0390030 | Msa1338190 | 0.807735 | 4.371370e-50 | -8.615850e-47 |
| Msa0390030 | Msa1362790 | 0.800439 | 1.440499e-48 | -8.615850e-47 |
| Msa0390030 | Msa1363330 | 0.801564 | 8.485204e-49 | -8.615850e-47 |
| Msa0390030 | Msa1369190 | 0.820611 | 6.261275e-53 | -8.615850e-47 |
| Msa0390030 | Msa1370860 | 0.846502 | 2.085815e-59 | -8.615850e-47 |
| Msa0390030 | Msa1379760 | 0.837422 | 5.247948e-57 | -8.615850e-47 |
| Msa0390030 | Msa1382780 | 0.828990 | 6.612460e-55 | -8.615850e-47 |
| Msa0390030 | Msa1386600 | 0.800934 | 1.141667e-48 | -8.615850e-47 |
| Msa0390030 | Msa1394290 | 0.801193 | 1.010838e-48 | -8.615850e-47 |
| Msa0390030 | Msa1404190 | 0.847504 | 1.109326e-59 | -8.615850e-47 |
| Msa0390030 | Msa1407460 | 0.828766 | 7.489386e-55 | -8.615850e-47 |
| Msa0390030 | Msa1413260 | 0.837487 | 5.049032e-57 | -8.615850e-47 |
| Msa0390030 | Msa1418340 | 0.818049 | 2.400942e-52 | -8.615850e-47 |
| Msa0390030 | Msa1425670 | 0.826224 | 3.050658e-54 | -8.615850e-47 |
| Msa0390030 | Msa1442850 | 0.809361 | 1.965252e-50 | -8.615850e-47 |
| Msa0390030 | Msa1448690 | 0.803461 | 3.448479e-49 | -8.615850e-47 |
| Msa0390030 | Msa1450280 | 0.845183 | 4.761456e-59 | -8.615850e-47 |
| Msa0390030 | Msa1451560 | 0.806640 | 7.457228e-50 | -8.615850e-47 |
| Msa0390030 | Msa1456050 | 0.861510 | 9.752307e-64 | -8.615850e-47 |
| Msa0390030 | Msa1462860 | 0.811819 | 5.783664e-51 | -8.615850e-47 |
| Msa0390030 | Msa1465080 | 0.843125 | 1.698652e-58 | -8.615850e-47 |
| Msa0241780 | Msa0390030 | 0.828952 | 6.753279e-55 | -8.615850e-47 |
| Msa0242410 | Msa0390030 | 0.832450 | 9.389203e-56 | -8.615850e-47 |
| Msa0244780 | Msa0390030 | 0.810714 | 1.004630e-50 | -8.615850e-47 |
| Msa0267970 | Msa0390030 | 0.839904 | 1.198509e-57 | -8.615850e-47 |
| Msa0268130 | Msa0390030 | 0.815984 | 6.984487e-52 | -8.615850e-47 |
| Msa0280430 | Msa0390030 | 0.813359 | 2.664560e-51 | -8.615850e-47 |
| Msa0280610 | Msa0390030 | 0.829106 | 6.197830e-55 | -8.615850e-47 |
| Msa0298990 | Msa0390030 | 0.809499 | 1.836134e-50 | -8.615850e-47 |
| Msa0310030 | Msa0390030 | 0.837102 | 6.336553e-57 | -8.615850e-47 |
| Msa0315170 | Msa0390030 | 0.804293 | 2.315797e-49 | -8.615850e-47 |
| Msa0317910 | Msa0390030 | 0.809162 | 2.168052e-50 | -8.615850e-47 |
| Msa0322890 | Msa0390030 | 0.832093 | 1.150681e-55 | -8.615850e-47 |
| Msa0348830 | Msa0390030 | 0.833666 | 4.677886e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0390030 | MtrunA17_Chr1g0147821 | 97.283 | 184 | 2 | 1 | 1 | 181 | 7 | 190 | 2.25e-117 | 330 |
| Msa0390030 | MtrunA17_Chr8g0365051 | 76.111 | 180 | 32 | 6 | 1 | 171 | 7 | 184 | 7.32e-64 | 194 |
| Msa0390030 | MtrunA17_Chr3g0139061 | 79.381 | 194 | 26 | 3 | 1 | 181 | 7 | 199 | 2.94e-53 | 168 |
| Msa0390030 | MtrunA17_Chr7g0263341 | 34.434 | 212 | 86 | 7 | 1 | 163 | 16 | 223 | 2.45e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0390030 | AT4G31580.2 | 69.072 | 194 | 47 | 3 | 1 | 181 | 7 | 200 | 6.54e-67 | 203 |
| Msa0390030 | AT4G31580.1 | 69.072 | 194 | 47 | 3 | 1 | 181 | 7 | 200 | 6.54e-67 | 203 |
| Msa0390030 | AT2G24590.1 | 71.579 | 190 | 45 | 4 | 1 | 181 | 7 | 196 | 2.79e-59 | 184 |
| Msa0390030 | AT1G23860.4 | 64.417 | 163 | 47 | 4 | 1 | 161 | 7 | 160 | 1.30e-41 | 138 |
| Msa0390030 | AT1G23860.1 | 62.424 | 165 | 51 | 5 | 1 | 161 | 7 | 164 | 4.57e-41 | 137 |
| Msa0390030 | AT1G23860.2 | 62.424 | 165 | 51 | 5 | 1 | 161 | 7 | 164 | 4.57e-41 | 137 |
| Msa0390030 | AT1G23860.3 | 70.874 | 103 | 25 | 1 | 1 | 103 | 7 | 104 | 7.16e-40 | 133 |
| Msa0390030 | AT1G60650.2 | 34.266 | 143 | 71 | 4 | 1 | 123 | 8 | 147 | 1.12e-11 | 62.4 |
| Msa0390030 | AT1G60650.1 | 34.266 | 143 | 71 | 4 | 1 | 123 | 8 | 147 | 1.12e-11 | 62.4 |
| Msa0390030 | AT3G53500.2 | 34.348 | 230 | 90 | 9 | 1 | 172 | 16 | 242 | 1.66e-11 | 61.6 |
Find 78 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGGGAATAGTGAGATTT+TGG | 0.237194 | 3_2:+606655 | Msa0390030:three_prime_UTR |
| GGTGGTGGCGGCGGCGGTGG+TGG | 0.290525 | 3_2:+605477 | Msa0390030:CDS |
| AGGTGACACGCTGCGGCGCC+TGG | 0.293523 | 3_2:-606055 | None:intergenic |
| GGTGGCGGCGGCGGTGGTGG+AGG | 0.354991 | 3_2:+605480 | Msa0390030:CDS |
| AGTGGTGGTGGCGGCGGCGG+TGG | 0.365151 | 3_2:+605474 | Msa0390030:CDS |
| GTATATGCAGAAATGGCATT+AGG | 0.366155 | 3_2:+606582 | Msa0390030:intron |
| TGCGACATTCACGAGCAAAA+TGG | 0.370957 | 3_2:-605563 | None:intergenic |
| TTCAAAATTAACTTCTGCTT+CGG | 0.370967 | 3_2:-606613 | None:intergenic |
| CGTGGTCGTGGCGGCGGCGG+CGG | 0.385772 | 3_2:+605504 | Msa0390030:CDS |
| GAGGAGGTGCCATATGCTAA+TGG | 0.408138 | 3_2:+606123 | Msa0390030:CDS |
| TTCGCAGGAGTCCAAGTTAT+GGG | 0.409234 | 3_2:+605637 | Msa0390030:CDS |
| AGAAGTGGTGGTGGCGGCGG+CGG | 0.411462 | 3_2:+605471 | Msa0390030:CDS |
| ATGTTGTGTTTGCAGTGTTT+GGG | 0.412023 | 3_2:+603990 | Msa0390030:intron |
| TCTAACCTTCGCCCATAACT+TGG | 0.420005 | 3_2:-605648 | None:intergenic |
| GGAGGTCGTGGTCGTGGCGG+CGG | 0.422133 | 3_2:+605498 | Msa0390030:CDS |
| GGTCGTGGTCGTGGCGGCGG+CGG | 0.428487 | 3_2:+605501 | Msa0390030:CDS |
| TATATGCAGAAATGGCATTA+GGG | 0.429730 | 3_2:+606583 | Msa0390030:intron |
| ATCGAGGTGGACTGCGGCTA+CGG | 0.452274 | 3_2:-605614 | None:intergenic |
| GGTGACACGCTGCGGCGCCT+GGG | 0.452893 | 3_2:-606054 | None:intergenic |
| GGCGGCGGTGGTGGAGGTCG+TGG | 0.460146 | 3_2:+605486 | Msa0390030:CDS |
| GTGACACGCTGCGGCGCCTG+GGG | 0.468230 | 3_2:-606053 | None:intergenic |
| TCTAGAAGTGGTGGTGGCGG+CGG | 0.468832 | 3_2:+605468 | Msa0390030:CDS |
| GGTGGTGGAGGTCGTGGTCG+TGG | 0.472836 | 3_2:+605492 | Msa0390030:CDS |
| TTTCGCAGGAGTCCAAGTTA+TGG | 0.489373 | 3_2:+605636 | Msa0390030:CDS |
| AGGAGGTGCCATATGCTAAT+GGG | 0.493730 | 3_2:+606124 | Msa0390030:CDS |
| ATAACTAACCCATTAGCATA+TGG | 0.508636 | 3_2:-606132 | None:intergenic |
| GATGCTATACGCGATCTAGA+TGG | 0.514035 | 3_2:+604072 | Msa0390030:CDS |
| TGTTATGAGTGTGGTGAACC+TGG | 0.515250 | 3_2:+605540 | Msa0390030:CDS |
| ACCTCCTCACGCCCACGGTA+AGG | 0.515427 | 3_2:-606108 | None:intergenic |
| ATTAACTTCTGCTTCGGCGT+CGG | 0.515869 | 3_2:-606607 | None:intergenic |
| GTCAGTGAGAGCAATTATTG+AGG | 0.526754 | 3_2:+606638 | Msa0390030:three_prime_UTR |
| TGTCGCAATCGTGGTGGTGG+TGG | 0.529392 | 3_2:+605579 | Msa0390030:CDS |
| CAAGTATTAAGCAAAGATAC+AGG | 0.533148 | 3_2:-606782 | None:intergenic |
| TTCTGTGTAACAGGCAAGAA+TGG | 0.536794 | 3_2:+605420 | Msa0390030:intron |
| AATTCTAGAAGTGGTGGTGG+CGG | 0.541335 | 3_2:+605465 | Msa0390030:CDS |
| TGATGACCGCAGAGATGCAC+AGG | 0.545051 | 3_2:+604050 | Msa0390030:CDS |
| TCCTTACCGTGGGCGTGAGG+AGG | 0.547639 | 3_2:+606107 | Msa0390030:CDS |
| TGGGTTGCTCGAAGACCACC+TGG | 0.550517 | 3_2:+604009 | Msa0390030:CDS |
| CACAATTCTAGAAGTGGTGG+TGG | 0.553562 | 3_2:+605462 | Msa0390030:CDS |
| TCACGCCCACGGTAAGGAGG+TGG | 0.554871 | 3_2:-606102 | None:intergenic |
| TCAGTGAGAGCAATTATTGA+GGG | 0.555148 | 3_2:+606639 | Msa0390030:three_prime_UTR |
| GTGTAACAGGCAAGAATGGT+TGG | 0.559187 | 3_2:+605424 | Msa0390030:intron |
| CATTCACGAGCAAAATGGCC+AGG | 0.561096 | 3_2:-605558 | None:intergenic |
| GAATGTCGCAATCGTGGTGG+TGG | 0.564770 | 3_2:+605576 | Msa0390030:CDS |
| GCAGTCCACCTCGATTTCGC+AGG | 0.566410 | 3_2:+605622 | Msa0390030:CDS |
| AGTCTCAGAGAGGGACCTTG+AGG | 0.566930 | 3_2:+603080 | Msa0390030:CDS |
| CTTTCTCACAATTCTAGAAG+TGG | 0.567201 | 3_2:+605456 | Msa0390030:CDS |
| ACCTCCTTACCGTGGGCGTG+AGG | 0.571158 | 3_2:+606104 | Msa0390030:CDS |
| CTCGTGGACGTAGCTACAGC+AGG | 0.573406 | 3_2:+606076 | Msa0390030:CDS |
| AAGTCAATAAAAGCATAGCC+AGG | 0.586577 | 3_2:-604027 | None:intergenic |
| GGAGTCCAAGTTATGGGCGA+AGG | 0.589847 | 3_2:+605643 | Msa0390030:CDS |
| AAGCAATTACTTAAAATAGA+CGG | 0.590512 | 3_2:-606823 | None:intergenic |
| CGCCGCAGCGTGTCACCTCG+TGG | 0.590625 | 3_2:+606060 | Msa0390030:CDS |
| CTTGGACTCCTGCGAAATCG+AGG | 0.595739 | 3_2:-605630 | None:intergenic |
| GATTTGAAGTGTTATGAGTG+TGG | 0.598609 | 3_2:+605531 | Msa0390030:CDS |
| TCTCACAATTCTAGAAGTGG+TGG | 0.600012 | 3_2:+605459 | Msa0390030:CDS |
| AGGTCACCACCTCCTTACCG+TGG | 0.601922 | 3_2:+606096 | Msa0390030:CDS |
| TAACAGGCAAGAATGGTTGG+AGG | 0.608447 | 3_2:+605427 | Msa0390030:intron |
| GCTCGTGAATGTCGCAATCG+TGG | 0.611165 | 3_2:+605570 | Msa0390030:CDS |
| GGTGGAGGTCGTGGTCGTGG+CGG | 0.619805 | 3_2:+605495 | Msa0390030:CDS |
| TCCTCACGCCCACGGTAAGG+AGG | 0.623016 | 3_2:-606105 | None:intergenic |
| CCAGGAGTTACAGTCCTCGT+GGG | 0.630414 | 3_2:+606025 | Msa0390030:intron |
| ACCAGGAGTTACAGTCCTCG+TGG | 0.630825 | 3_2:+606024 | Msa0390030:intron |
| GGTCACCACCTCCTTACCGT+GGG | 0.634356 | 3_2:+606097 | Msa0390030:CDS |
| ATGGCACCTCCTCACGCCCA+CGG | 0.635291 | 3_2:-606113 | None:intergenic |
| AAACACGAAATTCATCCTCA+AGG | 0.640455 | 3_2:-603095 | None:intergenic |
| GGAGTTACAGTCCTCGTGGG+CGG | 0.645283 | 3_2:+606028 | Msa0390030:intron |
| GGATTCTAGAGTCTCAGAGA+GGG | 0.661005 | 3_2:+603071 | Msa0390030:CDS |
| AACAGGCAAGAATGGTTGGA+GGG | 0.663974 | 3_2:+605428 | Msa0390030:intron |
| GTCCACGAGGTGACACGCTG+CGG | 0.671063 | 3_2:-606062 | None:intergenic |
| GGACTCCTGCGAAATCGAGG+TGG | 0.673792 | 3_2:-605627 | None:intergenic |
| TGACACGCTGCGGCGCCTGG+GGG | 0.679479 | 3_2:-606052 | None:intergenic |
| TGCGAAATCGAGGTGGACTG+CGG | 0.679589 | 3_2:-605620 | None:intergenic |
| CTGCTGTAGCTACGTCCACG+AGG | 0.684355 | 3_2:-606075 | None:intergenic |
| CGTGAATGTCGCAATCGTGG+TGG | 0.699969 | 3_2:+605573 | Msa0390030:CDS |
| TGGATTCTAGAGTCTCAGAG+AGG | 0.702659 | 3_2:+603070 | Msa0390030:CDS |
| TCAATAAAAGCATAGCCAGG+TGG | 0.704252 | 3_2:-604024 | None:intergenic |
| TAGCATCCTGTGCATCTCTG+CGG | 0.708826 | 3_2:-604056 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGAAGAAAAAAAAAATT+TGG | + | chr3_2:603339-603358 | Msa0390030:intron | 10.0% |
| !! | AAAAAAAAAATTTGGAAATA+GGG | + | chr3_2:603347-603366 | Msa0390030:intron | 10.0% |
| !!! | ATAAAAATTATGTTTTTGTA+TGG | + | chr3_2:603872-603891 | Msa0390030:intron | 10.0% |
| !!! | TAAAAATTATGTTTTTGTAT+GGG | + | chr3_2:603873-603892 | Msa0390030:intron | 10.0% |
| !! | GAAAAAAAAAATTTGGAAAT+AGG | + | chr3_2:603346-603365 | Msa0390030:intron | 15.0% |
| !!! | AATTATGATTAATCTTGTTT+TGG | + | chr3_2:603948-603967 | Msa0390030:intron | 15.0% |
| !!! | ATAATTTTTAACCTTGAAAA+AGG | - | chr3_2:605291-605310 | None:intergenic | 15.0% |
| !! | ACAAATAAACATTATATAGT+TGG | + | chr3_2:606469-606488 | Msa0390030:intron | 15.0% |
| !!! | TAACTTGATTTTTCATGTAA+AGG | + | chr3_2:603237-603256 | Msa0390030:intron | 20.0% |
| !! | TAAATTGAATTCTCAAAAGT+TGG | - | chr3_2:603646-603665 | None:intergenic | 20.0% |
| !! | AAACACAAATAAACTATTGT+TGG | + | chr3_2:603815-603834 | Msa0390030:intron | 20.0% |
| !! | TGGCACTTTAATAATATATA+TGG | - | chr3_2:604133-604152 | None:intergenic | 20.0% |
| !! | AATAACTTCGGAAAATATTA+TGG | + | chr3_2:604633-604652 | Msa0390030:intron | 20.0% |
| !!! | TGCTTAATTTTCTTGAAATT+TGG | + | chr3_2:604741-604760 | Msa0390030:intron | 20.0% |
| !! | TTAATTGAATATAAACGTGT+CGG | + | chr3_2:604941-604960 | Msa0390030:intron | 20.0% |
| !! | AATATATCTGCAACATTAAA+CGG | - | chr3_2:605123-605142 | None:intergenic | 20.0% |
| !! | AAAATACCACAATAAAACAT+TGG | - | chr3_2:605720-605739 | None:intergenic | 20.0% |
| !!! | ATTTTTCTTAATGATCATGT+AGG | + | chr3_2:605735-605754 | Msa0390030:intron | 20.0% |
| !!! | TTTTTCTTAATGATCATGTA+GGG | + | chr3_2:605736-605755 | Msa0390030:intron | 20.0% |
| !!! | AAAGCATTATTACAAAAAGT+AGG | - | chr3_2:605777-605796 | None:intergenic | 20.0% |
| !!! | TTTTTGTAATAATGCTTTTG+TGG | + | chr3_2:605779-605798 | Msa0390030:intron | 20.0% |
| !!! | ATTCTAAGGTATAAAATAGT+AGG | - | chr3_2:605875-605894 | None:intergenic | 20.0% |
| !! | GCTTAGTATGAAAAATTTAA+GGG | - | chr3_2:606163-606182 | None:intergenic | 20.0% |
| !! | TGCTTAGTATGAAAAATTTA+AGG | - | chr3_2:606164-606183 | None:intergenic | 20.0% |
| !! | TAGTTATTATTGTCACTATT+TGG | + | chr3_2:606184-606203 | Msa0390030:intron | 20.0% |
| !! | AAAATATCACCAAGTTAAAA+TGG | + | chr3_2:606322-606341 | Msa0390030:intron | 20.0% |
| !! | AAATATCACCAAGTTAAAAT+GGG | + | chr3_2:606323-606342 | Msa0390030:intron | 20.0% |
| !! | GTAAATATGCTTATTAAGTA+CGG | - | chr3_2:606418-606437 | None:intergenic | 20.0% |
| !! | CTAATATACAGACATAATAA+AGG | - | chr3_2:606440-606459 | None:intergenic | 20.0% |
| !! | AATAAACATTATATAGTTGG+AGG | + | chr3_2:606472-606491 | Msa0390030:intron | 20.0% |
| !! | AAATTAACATAAATCACATG+CGG | - | chr3_2:606498-606517 | None:intergenic | 20.0% |
| !! | ATTTCTGCATATACATTATT+TGG | - | chr3_2:606576-606595 | None:intergenic | 20.0% |
| !! | AAATAATGTATATGCAGAAA+TGG | + | chr3_2:606575-606594 | Msa0390030:intron | 20.0% |
| !!! | AATATGAATCTGTTTTGTTT+GGG | + | chr3_2:606696-606715 | Msa0390030:three_prime_UTR | 20.0% |
| !! | AAGCAATTACTTAAAATAGA+CGG | - | chr3_2:606826-606845 | None:intergenic | 20.0% |
| ! | ATTATTCATAAAGCTTGTCA+AGG | - | chr3_2:603539-603558 | None:intergenic | 25.0% |
| ! | TCAAAAATAAGTCAATCCAA+AGG | + | chr3_2:603600-603619 | Msa0390030:intron | 25.0% |
| !!! | GTTGTGTTGATTATTTTTCA+TGG | + | chr3_2:603749-603768 | Msa0390030:intron | 25.0% |
| ! | ATTTATTGAAATCACAGACA+TGG | - | chr3_2:603785-603804 | None:intergenic | 25.0% |
| !!! | AATAAACTATTGTTGGTTTC+TGG | + | chr3_2:603822-603841 | Msa0390030:intron | 25.0% |
| !!! | CTGTGTTGATTATTTTTCAT+GGG | + | chr3_2:603896-603915 | Msa0390030:intron | 25.0% |
| ! | TAATGTCATAGTAATATGCA+TGG | - | chr3_2:604153-604172 | None:intergenic | 25.0% |
| ! | GAACTCTTCATATTGAAATA+AGG | + | chr3_2:604812-604831 | Msa0390030:intron | 25.0% |
| ! | TATGTAAGTATTTATCTCAG+AGG | + | chr3_2:605001-605020 | Msa0390030:intron | 25.0% |
| ! | ATATATCTGCAACATTAAAC+GGG | - | chr3_2:605122-605141 | None:intergenic | 25.0% |
| ! | GGTATTAAACAGGTAAATAT+TGG | - | chr3_2:605219-605238 | None:intergenic | 25.0% |
| ! | TAGCAAAAGGATTATCATAT+TGG | - | chr3_2:605262-605281 | None:intergenic | 25.0% |
| !!! | TTAAAATGGGTAATTTGCTT+TGG | + | chr3_2:606336-606355 | Msa0390030:intron | 25.0% |
| !!! | TAAAATGGGTAATTTGCTTT+GGG | + | chr3_2:606337-606356 | Msa0390030:intron | 25.0% |
| ! | AGTATGTTCATAAGAAACTT+GGG | - | chr3_2:606393-606412 | None:intergenic | 25.0% |
| ! | AAGTATGTTCATAAGAAACT+TGG | - | chr3_2:606394-606413 | None:intergenic | 25.0% |
| ! | TTCAAAATTAACTTCTGCTT+CGG | - | chr3_2:606616-606635 | None:intergenic | 25.0% |
| !!! | GAATATGAATCTGTTTTGTT+TGG | + | chr3_2:606695-606714 | Msa0390030:three_prime_UTR | 25.0% |
| AAAAATTTGGAAATAGGGTC+TGG | + | chr3_2:603352-603371 | Msa0390030:intron | 30.0% | |
| AAAAATAAGCCAATCCAAAC+AGG | - | chr3_2:603415-603434 | None:intergenic | 30.0% | |
| !! | GTTGGCATCTTTAAGATTAA+GGG | - | chr3_2:603628-603647 | None:intergenic | 30.0% |
| !! | AGTTGGCATCTTTAAGATTA+AGG | - | chr3_2:603629-603648 | None:intergenic | 30.0% |
| !!! | GCTGTGTTGATTATTTTTCA+TGG | + | chr3_2:603895-603914 | Msa0390030:intron | 30.0% |
| TTGGAATCTTCAATTTCTCA+TGG | + | chr3_2:603967-603986 | Msa0390030:intron | 30.0% | |
| GACTTAAATATGAAGAGTTG+AGG | - | chr3_2:604241-604260 | None:intergenic | 30.0% | |
| ACAATTAACAATGTGAACTG+AGG | + | chr3_2:604369-604388 | Msa0390030:intron | 30.0% | |
| ! | GATTGGTGGTTAAATAACTT+CGG | + | chr3_2:604621-604640 | Msa0390030:intron | 30.0% |
| ATGAATCAAACAACATCACA+AGG | - | chr3_2:604788-604807 | None:intergenic | 30.0% | |
| !!! | TCATTTTTTCAAAGTATCGC+CGG | - | chr3_2:604920-604939 | None:intergenic | 30.0% |
| ! | AGGATTATCATATTGGTGTT+AGG | - | chr3_2:605255-605274 | None:intergenic | 30.0% |
| AAAAAGGAACATCTAGCAAA+AGG | - | chr3_2:605275-605294 | None:intergenic | 30.0% | |
| TTCTCATAAATCTAGTCACA+TGG | + | chr3_2:605347-605366 | Msa0390030:intron | 30.0% | |
| TCATTTGTATTCTGTGTAAC+AGG | + | chr3_2:605411-605430 | Msa0390030:intron | 30.0% | |
| CAAGGCTCAAATGAAAATAA+AGG | - | chr3_2:605680-605699 | None:intergenic | 30.0% | |
| !!! | CTTTATTTTCATTTGAGCCT+TGG | + | chr3_2:605678-605697 | Msa0390030:intron | 30.0% |
| CAGAGATAAGCATAATTCTA+AGG | - | chr3_2:605889-605908 | None:intergenic | 30.0% | |
| ! | TATCCATGTCATTTCTCTTA+TGG | + | chr3_2:605918-605937 | Msa0390030:intron | 30.0% |
| TCATTTCTCTTATGGTTGTT+AGG | + | chr3_2:605926-605945 | Msa0390030:intron | 30.0% | |
| ATAACTAACCCATTAGCATA+TGG | - | chr3_2:606135-606154 | None:intergenic | 30.0% | |
| AAATGTTCCTTGAAAAACCA+GGG | - | chr3_2:606214-606233 | None:intergenic | 30.0% | |
| AAAATGTTCCTTGAAAAACC+AGG | - | chr3_2:606215-606234 | None:intergenic | 30.0% | |
| !!! | GCAAATTACCCATTTTAACT+TGG | - | chr3_2:606334-606353 | None:intergenic | 30.0% |
| GTATGTTCATAAGAAACTTG+GGG | - | chr3_2:606392-606411 | None:intergenic | 30.0% | |
| TATATGCAGAAATGGCATTA+GGG | + | chr3_2:606583-606602 | Msa0390030:intron | 30.0% | |
| ! | CTTGAGTTTTACTGTTGTAT+TGG | + | chr3_2:606725-606744 | Msa0390030:three_prime_UTR | 30.0% |
| CAAGTATTAAGCAAAGATAC+AGG | - | chr3_2:606785-606804 | None:intergenic | 30.0% | |
| AAACACGAAATTCATCCTCA+AGG | - | chr3_2:603098-603117 | None:intergenic | 35.0% | |
| ! | GAGGATGAATTTCGTGTTTT+TGG | + | chr3_2:603099-603118 | Msa0390030:CDS | 35.0% |
| !!! | GTGTTTTTGGTGTAATTCGA+AGG | + | chr3_2:603112-603131 | Msa0390030:CDS | 35.0% |
| AAAACATCCACACCATCAAA+AGG | - | chr3_2:603380-603399 | None:intergenic | 35.0% | |
| ! | TTTGTTTCTTAGTGCCTGTT+TGG | + | chr3_2:603398-603417 | Msa0390030:intron | 35.0% |
| !! | TCTGAGAGTTTTATGAGAAG+CGG | + | chr3_2:603688-603707 | Msa0390030:intron | 35.0% |
| ATGTTGTGTTTGCAGTGTTT+GGG | + | chr3_2:603990-604009 | Msa0390030:intron | 35.0% | |
| ! | AAGTCAATAAAAGCATAGCC+AGG | - | chr3_2:604030-604049 | None:intergenic | 35.0% |
| !!! | TTGTTTTTTCACCCCTTTTC+CGG | + | chr3_2:604195-604214 | Msa0390030:intron | 35.0% |
| TGTCTCTACATGAAGTCAAA+GGG | - | chr3_2:604352-604371 | None:intergenic | 35.0% | |
| TTGTCTCTACATGAAGTCAA+AGG | - | chr3_2:604353-604372 | None:intergenic | 35.0% | |
| ! | TGCTCTGATAAGTTTTCGAT+TGG | + | chr3_2:604604-604623 | Msa0390030:intron | 35.0% |
| ! | TCTGATAAGTTTTCGATTGG+TGG | + | chr3_2:604607-604626 | Msa0390030:intron | 35.0% |
| AACATCACAAGGCTATATCA+AGG | - | chr3_2:604777-604796 | None:intergenic | 35.0% | |
| !! | TACTTACATACTCTGAAGCA+CGG | - | chr3_2:604991-605010 | None:intergenic | 35.0% |
| AAACGGGTAACAAAAAAGCT+TGG | - | chr3_2:605106-605125 | None:intergenic | 35.0% | |
| ACATACTGTCTTCAAACTGA+AGG | - | chr3_2:605170-605189 | None:intergenic | 35.0% | |
| TTTGAAGACAGTATGTTTGC+AGG | + | chr3_2:605174-605193 | Msa0390030:intron | 35.0% | |
| TTGAAGACAGTATGTTTGCA+GGG | + | chr3_2:605175-605194 | Msa0390030:intron | 35.0% | |
| !! | TGCTAGATGTTCCTTTTTCA+AGG | + | chr3_2:605277-605296 | Msa0390030:intron | 35.0% |
| GAAAACGTCAGTATCAAACA+CGG | + | chr3_2:605312-605331 | Msa0390030:intron | 35.0% | |
| ! | CTTTCTCACAATTCTAGAAG+TGG | + | chr3_2:605456-605475 | Msa0390030:CDS | 35.0% |
| ! | GATTTGAAGTGTTATGAGTG+TGG | + | chr3_2:605531-605550 | Msa0390030:CDS | 35.0% |
| !! | TTGGCACCAATGTTTTATTG+TGG | + | chr3_2:605711-605730 | Msa0390030:intron | 35.0% |
| CAACCATAAGAGAAATGACA+TGG | - | chr3_2:605924-605943 | None:intergenic | 35.0% | |
| TTCTCTTATGGTTGTTAGGT+TGG | + | chr3_2:605930-605949 | Msa0390030:intron | 35.0% | |
| GTATATGCAGAAATGGCATT+AGG | + | chr3_2:606582-606601 | Msa0390030:intron | 35.0% | |
| TCAGTGAGAGCAATTATTGA+GGG | + | chr3_2:606639-606658 | Msa0390030:three_prime_UTR | 35.0% | |
| ! | TTGAGGGAATAGTGAGATTT+TGG | + | chr3_2:606655-606674 | Msa0390030:three_prime_UTR | 35.0% |
| !! | GTGAGATTTTGGTCATTTAG+TGG | + | chr3_2:606666-606685 | Msa0390030:three_prime_UTR | 35.0% |
| TTCTTAGTGCCTGTTTGGAT+TGG | + | chr3_2:603403-603422 | Msa0390030:intron | 40.0% | |
| !! | TTTAAGATTAAGGGCGCCTT+TGG | - | chr3_2:603619-603638 | None:intergenic | 40.0% |
| !! | CTGAGAGTTTTATGAGAAGC+GGG | + | chr3_2:603689-603708 | Msa0390030:intron | 40.0% |
| GATGTTGTGTTTGCAGTGTT+TGG | + | chr3_2:603989-604008 | Msa0390030:intron | 40.0% | |
| ! | TCAATAAAAGCATAGCCAGG+TGG | - | chr3_2:604027-604046 | None:intergenic | 40.0% |
| TGAACATATCGACCGGAAAA+GGG | - | chr3_2:604210-604229 | None:intergenic | 40.0% | |
| ! | TTTTCCGGTCGATATGTTCA+CGG | + | chr3_2:604210-604229 | Msa0390030:intron | 40.0% |
| GCTACACTTCTCTTGCATAA+CGG | + | chr3_2:604423-604442 | Msa0390030:intron | 40.0% | |
| GCTACACTTCTCTTGCATAA+CGG | + | chr3_2:604423-604442 | Msa0390030:intron | 40.0% | |
| TGCTACTGCAATTAACCTGT+CGG | + | chr3_2:604531-604550 | Msa0390030:intron | 40.0% | |
| GGGACATATATACAGAACAC+AGG | - | chr3_2:604571-604590 | None:intergenic | 40.0% | |
| TGATATGGATATGTCGACAC+CGG | + | chr3_2:604898-604917 | Msa0390030:intron | 40.0% | |
| ! | GAATATAAACGTGTCGGTGT+CGG | + | chr3_2:604947-604966 | Msa0390030:intron | 40.0% |
| ! | AATATAAACGTGTCGGTGTC+GGG | + | chr3_2:604948-604967 | Msa0390030:intron | 40.0% |
| TGTCTTCAAACTGAAGGTCT+CGG | - | chr3_2:605164-605183 | None:intergenic | 40.0% | |
| ACAGTATGTTTGCAGGGTTA+TGG | + | chr3_2:605181-605200 | Msa0390030:intron | 40.0% | |
| GACACAGCTAGGTATTAAAC+AGG | - | chr3_2:605229-605248 | None:intergenic | 40.0% | |
| TTCTGTGTAACAGGCAAGAA+TGG | + | chr3_2:605420-605439 | Msa0390030:intron | 40.0% | |
| ! | TCTCACAATTCTAGAAGTGG+TGG | + | chr3_2:605459-605478 | Msa0390030:CDS | 40.0% |
| ! | GTCTTTCTTTTGTATGCACC+AGG | + | chr3_2:606007-606026 | Msa0390030:intron | 40.0% |
| ! | TATCTTCTGCCGCTATCTTT+TGG | + | chr3_2:606360-606379 | Msa0390030:intron | 40.0% |
| TCATAAGAAACTTGGGGTCT+TGG | - | chr3_2:606386-606405 | None:intergenic | 40.0% | |
| GTCAGTGAGAGCAATTATTG+AGG | + | chr3_2:606638-606657 | Msa0390030:three_prime_UTR | 40.0% | |
| !! | TGGATTCTAGAGTCTCAGAG+AGG | + | chr3_2:603070-603089 | Msa0390030:CDS | 45.0% |
| !! | GGATTCTAGAGTCTCAGAGA+GGG | + | chr3_2:603071-603090 | Msa0390030:CDS | 45.0% |
| GATGCTATACGCGATCTAGA+TGG | + | chr3_2:604072-604091 | Msa0390030:CDS | 45.0% | |
| GAACATATCGACCGGAAAAG+GGG | - | chr3_2:604209-604228 | None:intergenic | 45.0% | |
| GTGAACATATCGACCGGAAA+AGG | - | chr3_2:604211-604230 | None:intergenic | 45.0% | |
| AAAGCCGTGAACATATCGAC+CGG | - | chr3_2:604217-604236 | None:intergenic | 45.0% | |
| ACTGAGGATTTGCACTGCTT+TGG | + | chr3_2:604385-604404 | Msa0390030:intron | 45.0% | |
| CTGAGGATTTGCACTGCTTT+GGG | + | chr3_2:604386-604405 | Msa0390030:intron | 45.0% | |
| TGAGGATTTGCACTGCTTTG+GGG | + | chr3_2:604387-604406 | Msa0390030:intron | 45.0% | |
| ! | CAGAGCACAATTTGCTCAGA+GGG | - | chr3_2:604591-604610 | None:intergenic | 45.0% |
| ! | TCAGAGCACAATTTGCTCAG+AGG | - | chr3_2:604592-604611 | None:intergenic | 45.0% |
| CACTGGACACAACACTGATA+TGG | + | chr3_2:604883-604902 | Msa0390030:intron | 45.0% | |
| GTGTTAGGTTTGACACAGCT+AGG | - | chr3_2:605240-605259 | None:intergenic | 45.0% | |
| GTGTAACAGGCAAGAATGGT+TGG | + | chr3_2:605424-605443 | Msa0390030:intron | 45.0% | |
| TAACAGGCAAGAATGGTTGG+AGG | + | chr3_2:605427-605446 | Msa0390030:intron | 45.0% | |
| AACAGGCAAGAATGGTTGGA+GGG | + | chr3_2:605428-605447 | Msa0390030:intron | 45.0% | |
| ! | CACAATTCTAGAAGTGGTGG+TGG | + | chr3_2:605462-605481 | Msa0390030:CDS | 45.0% |
| !! | AATTCTAGAAGTGGTGGTGG+CGG | + | chr3_2:605465-605484 | Msa0390030:CDS | 45.0% |
| TGTTATGAGTGTGGTGAACC+TGG | + | chr3_2:605540-605559 | Msa0390030:CDS | 45.0% | |
| TGCGACATTCACGAGCAAAA+TGG | - | chr3_2:605566-605585 | None:intergenic | 45.0% | |
| TTTCGCAGGAGTCCAAGTTA+TGG | + | chr3_2:605636-605655 | Msa0390030:CDS | 45.0% | |
| TTCGCAGGAGTCCAAGTTAT+GGG | + | chr3_2:605637-605656 | Msa0390030:CDS | 45.0% | |
| TCTAACCTTCGCCCATAACT+TGG | - | chr3_2:605651-605670 | None:intergenic | 45.0% | |
| GTTATGGGCGAAGGTTAGAT+TGG | + | chr3_2:605652-605671 | Msa0390030:intron | 45.0% | |
| ! | GAGCCTTGGTGCAATTGTAT+TGG | + | chr3_2:605692-605711 | Msa0390030:intron | 45.0% |
| GTGCCAATACAATTGCACCA+AGG | - | chr3_2:605698-605717 | None:intergenic | 45.0% | |
| !! | AGGAGGTGCCATATGCTAAT+GGG | + | chr3_2:606124-606143 | Msa0390030:CDS | 45.0% |
| ATTAACTTCTGCTTCGGCGT+CGG | - | chr3_2:606610-606629 | None:intergenic | 45.0% | |
| ! | TAGGGTCTGGTGCCTTTTGA+TGG | + | chr3_2:603365-603384 | Msa0390030:intron | 50.0% |
| !!! | TCTGGTGCCTTTTGATGGTG+TGG | + | chr3_2:603370-603389 | Msa0390030:intron | 50.0% |
| !! | ATGAGAAGCGGGTTAGTGAG+TGG | + | chr3_2:603700-603719 | Msa0390030:intron | 50.0% |
| !! | TGAGAAGCGGGTTAGTGAGT+GGG | + | chr3_2:603701-603720 | Msa0390030:intron | 50.0% |
| TAGCATCCTGTGCATCTCTG+CGG | - | chr3_2:604059-604078 | None:intergenic | 50.0% | |
| TGCTACTGCAATTAACCCGC+CGG | + | chr3_2:604465-604484 | Msa0390030:intron | 50.0% | |
| ! | ATGCAAGAGAAGTGTAGCGC+CGG | - | chr3_2:604487-604506 | None:intergenic | 50.0% |
| GTGTAAGCTGTTCGCAGACA+TGG | + | chr3_2:604859-604878 | Msa0390030:intron | 50.0% | |
| CATTCACGAGCAAAATGGCC+AGG | - | chr3_2:605561-605580 | None:intergenic | 50.0% | |
| !! | GAGGAGGTGCCATATGCTAA+TGG | + | chr3_2:606123-606142 | Msa0390030:CDS | 50.0% |
| TGTCACTATTTGGACAGCCC+TGG | + | chr3_2:606194-606213 | Msa0390030:intron | 50.0% | |
| !! | TGGACAGCCCTGGTTTTTCA+AGG | + | chr3_2:606204-606223 | Msa0390030:intron | 50.0% |
| GGGTCTTGGCCAAAAGATAG+CGG | - | chr3_2:606372-606391 | None:intergenic | 50.0% | |
| AGTCTCAGAGAGGGACCTTG+AGG | + | chr3_2:603080-603099 | Msa0390030:CDS | 55.0% | |
| TGATGACCGCAGAGATGCAC+AGG | + | chr3_2:604050-604069 | Msa0390030:CDS | 55.0% | |
| TGCAAGCAGCTCTGCAGTAG+TGG | + | chr3_2:604288-604307 | Msa0390030:intron | 55.0% | |
| GAACACAGGCAGCACTCACA+TGG | - | chr3_2:604557-604576 | None:intergenic | 55.0% | |
| CTGTTCGCAGACATGGACAC+TGG | + | chr3_2:604866-604885 | Msa0390030:intron | 55.0% | |
| ! | GCACGGACACCTCTAGGAAT+AGG | - | chr3_2:604974-604993 | None:intergenic | 55.0% |
| ! | TCTGAAGCACGGACACCTCT+AGG | - | chr3_2:604980-604999 | None:intergenic | 55.0% |
| GCTCGTGAATGTCGCAATCG+TGG | + | chr3_2:605570-605589 | Msa0390030:CDS | 55.0% | |
| CGTGAATGTCGCAATCGTGG+TGG | + | chr3_2:605573-605592 | Msa0390030:CDS | 55.0% | |
| GAATGTCGCAATCGTGGTGG+TGG | + | chr3_2:605576-605595 | Msa0390030:CDS | 55.0% | |
| !! | TGCGAAATCGAGGTGGACTG+CGG | - | chr3_2:605623-605642 | None:intergenic | 55.0% |
| CTTGGACTCCTGCGAAATCG+AGG | - | chr3_2:605633-605652 | None:intergenic | 55.0% | |
| GGAGTCCAAGTTATGGGCGA+AGG | + | chr3_2:605643-605662 | Msa0390030:CDS | 55.0% | |
| ACCAGGAGTTACAGTCCTCG+TGG | + | chr3_2:606024-606043 | Msa0390030:intron | 55.0% | |
| CCAGGAGTTACAGTCCTCGT+GGG | + | chr3_2:606025-606044 | Msa0390030:intron | 55.0% | |
| TGGGTTGCTCGAAGACCACC+TGG | + | chr3_2:604009-604028 | Msa0390030:CDS | 60.0% | |
| !! | AAGAGAAGTGTAGCGCCGGC+GGG | - | chr3_2:604483-604502 | None:intergenic | 60.0% |
| ! | CAAGAGAAGTGTAGCGCCGG+CGG | - | chr3_2:604484-604503 | None:intergenic | 60.0% |
| ! | GGTGTCGGGCCTATTCCTAG+AGG | + | chr3_2:604962-604981 | Msa0390030:intron | 60.0% |
| !! | TCTAGAAGTGGTGGTGGCGG+CGG | + | chr3_2:605468-605487 | Msa0390030:CDS | 60.0% |
| !! | TGTCGCAATCGTGGTGGTGG+TGG | + | chr3_2:605579-605598 | Msa0390030:CDS | 60.0% |
| !! | AATCGTGGTGGTGGTGGTGC+AGG | + | chr3_2:605585-605604 | Msa0390030:CDS | 60.0% |
| !! | ATCGAGGTGGACTGCGGCTA+CGG | - | chr3_2:605617-605636 | None:intergenic | 60.0% |
| GCAGTCCACCTCGATTTCGC+AGG | + | chr3_2:605622-605641 | Msa0390030:CDS | 60.0% | |
| GGACTCCTGCGAAATCGAGG+TGG | - | chr3_2:605630-605649 | None:intergenic | 60.0% | |
| CCCACGAGGACTGTAACTCC+TGG | - | chr3_2:606028-606047 | None:intergenic | 60.0% | |
| GGAGTTACAGTCCTCGTGGG+CGG | + | chr3_2:606028-606047 | Msa0390030:intron | 60.0% | |
| CTGCTGTAGCTACGTCCACG+AGG | - | chr3_2:606078-606097 | None:intergenic | 60.0% | |
| CTCGTGGACGTAGCTACAGC+AGG | + | chr3_2:606076-606095 | Msa0390030:CDS | 60.0% | |
| AGGTCACCACCTCCTTACCG+TGG | + | chr3_2:606096-606115 | Msa0390030:CDS | 60.0% | |
| GGTCACCACCTCCTTACCGT+GGG | + | chr3_2:606097-606116 | Msa0390030:CDS | 60.0% | |
| GCAGCACTCACATGGCCGAC+AGG | - | chr3_2:604549-604568 | None:intergenic | 65.0% | |
| GTCCACGAGGTGACACGCTG+CGG | - | chr3_2:606065-606084 | None:intergenic | 65.0% | |
| TCACGCCCACGGTAAGGAGG+TGG | - | chr3_2:606105-606124 | None:intergenic | 65.0% | |
| ACCTCCTTACCGTGGGCGTG+AGG | + | chr3_2:606104-606123 | Msa0390030:CDS | 65.0% | |
| TCCTCACGCCCACGGTAAGG+AGG | - | chr3_2:606108-606127 | None:intergenic | 65.0% | |
| TCCTTACCGTGGGCGTGAGG+AGG | + | chr3_2:606107-606126 | Msa0390030:CDS | 65.0% | |
| ACCTCCTCACGCCCACGGTA+AGG | - | chr3_2:606111-606130 | None:intergenic | 65.0% | |
| ATGGCACCTCCTCACGCCCA+CGG | - | chr3_2:606116-606135 | None:intergenic | 65.0% | |
| !! | AGAAGTGGTGGTGGCGGCGG+CGG | + | chr3_2:605471-605490 | Msa0390030:CDS | 70.0% |
| !! | GGTGGTGGAGGTCGTGGTCG+TGG | + | chr3_2:605492-605511 | Msa0390030:CDS | 70.0% |
| GGTGGAGGTCGTGGTCGTGG+CGG | + | chr3_2:605495-605514 | Msa0390030:CDS | 70.0% | |
| GGAGGTCGTGGTCGTGGCGG+CGG | + | chr3_2:605498-605517 | Msa0390030:CDS | 75.0% | |
| TGACACGCTGCGGCGCCTGG+GGG | - | chr3_2:606055-606074 | None:intergenic | 75.0% | |
| GTGACACGCTGCGGCGCCTG+GGG | - | chr3_2:606056-606075 | None:intergenic | 75.0% | |
| GGTGACACGCTGCGGCGCCT+GGG | - | chr3_2:606057-606076 | None:intergenic | 75.0% | |
| AGGTGACACGCTGCGGCGCC+TGG | - | chr3_2:606058-606077 | None:intergenic | 75.0% | |
| CGCCGCAGCGTGTCACCTCG+TGG | + | chr3_2:606060-606079 | Msa0390030:CDS | 75.0% | |
| !!! | AGTGGTGGTGGCGGCGGCGG+TGG | + | chr3_2:605474-605493 | Msa0390030:CDS | 80.0% |
| !!! | GGCGGCGGTGGTGGAGGTCG+TGG | + | chr3_2:605486-605505 | Msa0390030:CDS | 80.0% |
| ! | GGTCGTGGTCGTGGCGGCGG+CGG | + | chr3_2:605501-605520 | Msa0390030:CDS | 80.0% |
| ! | GTCCTCGTGGGCGGTCCCCC+AGG | + | chr3_2:606037-606056 | Msa0390030:CDS | 80.0% |
| !!! | GGTGGTGGCGGCGGCGGTGG+TGG | + | chr3_2:605477-605496 | Msa0390030:CDS | 85.0% |
| !! | GGTGGCGGCGGCGGTGGTGG+AGG | + | chr3_2:605480-605499 | Msa0390030:CDS | 85.0% |
| ! | CGTGGTCGTGGCGGCGGCGG+CGG | + | chr3_2:605504-605523 | Msa0390030:CDS | 85.0% |
| ! | CGCCTGGGGGACCGCCCACG+AGG | - | chr3_2:606042-606061 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 603063 | 606853 | 603063 | ID=Msa0390030;Name=Msa0390030 |
| chr3_2 | mRNA | 603063 | 606853 | 603063 | ID=Msa0390030-mRNA-1;Parent=Msa0390030;Name=Msa0390030-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|1|0.8|1|0.75|0.8|5|225|181 |
| chr3_2 | exon | 603063 | 603133 | 603063 | ID=Msa0390030-mRNA-1:exon:153;Parent=Msa0390030-mRNA-1 |
| chr3_2 | exon | 604005 | 604093 | 604005 | ID=Msa0390030-mRNA-1:exon:154;Parent=Msa0390030-mRNA-1 |
| chr3_2 | exon | 605433 | 605664 | 605433 | ID=Msa0390030-mRNA-1:exon:155;Parent=Msa0390030-mRNA-1 |
| chr3_2 | exon | 606029 | 606145 | 606029 | ID=Msa0390030-mRNA-1:exon:156;Parent=Msa0390030-mRNA-1 |
| chr3_2 | exon | 606592 | 606853 | 606592 | ID=Msa0390030-mRNA-1:exon:157;Parent=Msa0390030-mRNA-1 |
| chr3_2 | CDS | 603063 | 603133 | 603063 | ID=Msa0390030-mRNA-1:cds;Parent=Msa0390030-mRNA-1 |
| chr3_2 | CDS | 604005 | 604093 | 604005 | ID=Msa0390030-mRNA-1:cds;Parent=Msa0390030-mRNA-1 |
| chr3_2 | CDS | 605433 | 605664 | 605433 | ID=Msa0390030-mRNA-1:cds;Parent=Msa0390030-mRNA-1 |
| chr3_2 | CDS | 606029 | 606145 | 606029 | ID=Msa0390030-mRNA-1:cds;Parent=Msa0390030-mRNA-1 |
| chr3_2 | CDS | 606592 | 606628 | 606592 | ID=Msa0390030-mRNA-1:cds;Parent=Msa0390030-mRNA-1 |
| chr3_2 | three_prime_UTR | 606629 | 606853 | 606629 | ID=Msa0390030-mRNA-1:three_prime_utr;Parent=Msa0390030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
