AlfalfaGEDB | Msa0626030

M. sativa cultivar zhongmu-4 / Msa0626030

KEGG: K14803|K17499
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF00481.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0626030	XP_013454522.1	92.051	390	5	1	24	413	1	364	0.0	736

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0626030	sp\|Q9SZ53\|P2C60_ARATH	71.774	372	76	3	24	394	1	344	0.0	555

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0626030	B7FLN2	92.051	390	5	1	24	413	1	364	0.0	736

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014800	Msa0626030	0.822496	2.296165e-53	-8.615850e-47
Msa0023000	Msa0626030	0.805603	1.232853e-49	-8.615850e-47
Msa0105700	Msa0626030	0.804566	2.031491e-49	-8.615850e-47
Msa0115270	Msa0626030	0.808875	2.498595e-50	-8.615850e-47
Msa0115390	Msa0626030	0.818849	1.581760e-52	-8.615850e-47
Msa0152170	Msa0626030	0.803084	4.126981e-49	-8.615850e-47
Msa0194480	Msa0626030	0.843711	1.184135e-58	-8.615850e-47
Msa0226890	Msa0626030	0.813618	2.336574e-51	-8.615850e-47
Msa0298700	Msa0626030	0.806677	7.323312e-50	-8.615850e-47
Msa0372340	Msa0626030	0.803506	3.374436e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0626030	MtrunA17_Chr4g0001761	92.051	390	5	1	24	413	1	364	0.0	736
Msa0626030	MtrunA17_Chr3g0136811	70.801	387	84	3	24	407	1	361	0.0	573
Msa0626030	MtrunA17_Chr1g0150071	65.104	384	107	2	24	406	1	358	0.0	521
Msa0626030	MtrunA17_Chr4g0007811	53.371	178	33	2	63	240	54	181	4.51e-56	184
Msa0626030	MtrunA17_Chr5g0407161	41.618	173	93	4	209	380	184	349	1.73e-35	134
Msa0626030	MtrunA17_Chr1g0194191	35.484	248	130	7	166	405	140	365	4.28e-34	130
Msa0626030	MtrunA17_Chr3g0138281	37.379	206	103	4	209	412	183	364	1.12e-33	129
Msa0626030	MtrunA17_Chr4g0065141	38.636	176	104	1	204	379	181	352	1.06e-32	127
Msa0626030	MtrunA17_Chr2g0293811	41.176	170	91	3	207	375	168	329	1.43e-32	126
Msa0626030	MtrunA17_Chr5g0435721	32.899	307	133	10	46	347	192	430	1.01e-31	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0626030	AT4G31860.1	71.774	372	76	3	24	394	1	344	0.0	555
Msa0626030	AT2G25070.1	68.548	372	86	3	24	394	1	342	0.0	536
Msa0626030	AT2G25070.2	68.548	372	86	3	24	394	1	342	0.0	536
Msa0626030	AT4G31860.3	72.100	319	63	1	24	342	1	293	5.01e-172	483
Msa0626030	AT4G31860.2	71.761	301	59	1	24	324	1	275	3.00e-160	452
Msa0626030	AT1G07430.1	33.660	306	119	11	46	337	120	355	3.77e-34	132
Msa0626030	AT2G33700.1	42.012	169	91	2	209	377	183	344	3.01e-33	129
Msa0626030	AT2G25620.1	40.237	169	95	2	209	375	190	354	7.10e-33	128
Msa0626030	AT2G25620.2	40.237	169	95	2	209	375	190	354	7.10e-33	128
Msa0626030	AT1G48040.1	41.011	178	89	4	207	379	185	351	1.25e-31	124

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Find 152 sgRNAs with CRISPR-Local

Find 560 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTTCAGCAAGCAATAC+TGG	0.404647	4_3:-5413081	Msa0626030:three_prime_UTR
AAACTTGTTGTTGCAAATGC+TGG	0.516391	4_3:-5415825	Msa0626030:CDS
AAAGACAGGATTCTAAAAGC+TGG	0.564183	4_3:-5414816	Msa0626030:CDS
AAAGTCCACAAGCTGCTGGC+TGG	0.483577	4_3:+5413683	None:intergenic
AAAGTTGTCTGGTATGCTTG+AGG	0.662387	4_3:-5417228	Msa0626030:CDS
AAATTTACAATCCTCTATTG+AGG	0.472821	4_3:+5413174	None:intergenic
AACGACAAGAATCTGAAATC+TGG	0.426961	4_3:+5413200	None:intergenic
AAGAATTCGGTGCAATGTTA+TGG	0.331964	4_3:-5412921	Msa0626030:three_prime_UTR
AAGTTGTCTGGTATGCTTGA+GGG	0.483126	4_3:-5417227	Msa0626030:CDS
AATCACAATTAAATAGACCA+AGG	0.662173	4_3:+5412519	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACGACCTAGAAGAATATATA+TGG	-	chr4_3:5412883-5412902	Msa0626030:three_prime_UTR	30.0%
GGTTATAAATTGGACTTATG+TGG	-	chr4_3:5412931-5412950	Msa0626030:three_prime_UTR	30.0%
TAACTCATTCCAAAAAGGAA+AGG	+	chr4_3:5413024-5413043	None:intergenic	30.0%
AGAACTAACTCATTCCAAAA+AGG	+	chr4_3:5413029-5413048	None:intergenic	30.0%
CAAAATAAATACTACTCGAG+AGG	-	chr4_3:5413274-5413293	Msa0626030:three_prime_UTR	30.0%
TGATTTGATGTGATTGATGA+TGG	-	chr4_3:5413489-5413508	Msa0626030:CDS	30.0%
AGAATAACTTCCCACATAAA+CGG	+	chr4_3:5413820-5413839	None:intergenic	30.0%
ATCTTTGCGTTGTTAAATAG+TGG	-	chr4_3:5413889-5413908	Msa0626030:intron	30.0%
TTGTACTAAACAGTGTATTG+TGG	+	chr4_3:5413943-5413962	None:intergenic	30.0%
ACACTGTTTAGTACAAAATG+TGG	-	chr4_3:5413947-5413966	Msa0626030:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	5412501	5420590	5412501	ID=Msa0626030;Name=Msa0626030
chr4_3	mRNA	5412501	5420590	5412501	ID=Msa0626030-mRNA-1;Parent=Msa0626030;Name=Msa0626030-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|1\|0.91\|1\|0.90\|0.91\|12\|826\|413
chr4_3	exon	5412501	5413542	5412501	ID=Msa0626030-mRNA-1:exon:1524;Parent=Msa0626030-mRNA-1
chr4_3	exon	5413662	5413716	5413662	ID=Msa0626030-mRNA-1:exon:1523;Parent=Msa0626030-mRNA-1
chr4_3	exon	5413813	5413865	5413813	ID=Msa0626030-mRNA-1:exon:1522;Parent=Msa0626030-mRNA-1
chr4_3	exon	5414537	5414613	5414537	ID=Msa0626030-mRNA-1:exon:1521;Parent=Msa0626030-mRNA-1
chr4_3	exon	5414760	5414883	5414760	ID=Msa0626030-mRNA-1:exon:1520;Parent=Msa0626030-mRNA-1
chr4_3	exon	5415791	5415916	5415791	ID=Msa0626030-mRNA-1:exon:1519;Parent=Msa0626030-mRNA-1
chr4_3	exon	5416706	5416783	5416706	ID=Msa0626030-mRNA-1:exon:1518;Parent=Msa0626030-mRNA-1
chr4_3	exon	5417163	5417316	5417163	ID=Msa0626030-mRNA-1:exon:1517;Parent=Msa0626030-mRNA-1
chr4_3	exon	5418076	5418184	5418076	ID=Msa0626030-mRNA-1:exon:1516;Parent=Msa0626030-mRNA-1
chr4_3	exon	5418483	5418546	5418483	ID=Msa0626030-mRNA-1:exon:1515;Parent=Msa0626030-mRNA-1
chr4_3	exon	5419404	5419526	5419404	ID=Msa0626030-mRNA-1:exon:1514;Parent=Msa0626030-mRNA-1
chr4_3	exon	5420528	5420590	5420528	ID=Msa0626030-mRNA-1:exon:1513;Parent=Msa0626030-mRNA-1
chr4_3	CDS	5420528	5420590	5420528	ID=Msa0626030-mRNA-1:cds;Parent=Msa0626030-mRNA-1
chr4_3	CDS	5419404	5419526	5419404	ID=Msa0626030-mRNA-1:cds;Parent=Msa0626030-mRNA-1
chr4_3	CDS	5418483	5418546	5418483	ID=Msa0626030-mRNA-1:cds;Parent=Msa0626030-mRNA-1
chr4_3	CDS	5418076	5418184	5418076	ID=Msa0626030-mRNA-1:cds;Parent=Msa0626030-mRNA-1
chr4_3	CDS	5417163	5417316	5417163	ID=Msa0626030-mRNA-1:cds;Parent=Msa0626030-mRNA-1
chr4_3	CDS	5416706	5416783	5416706	ID=Msa0626030-mRNA-1:cds;Parent=Msa0626030-mRNA-1
chr4_3	CDS	5415791	5415916	5415791	ID=Msa0626030-mRNA-1:cds;Parent=Msa0626030-mRNA-1
chr4_3	CDS	5414760	5414883	5414760	ID=Msa0626030-mRNA-1:cds;Parent=Msa0626030-mRNA-1
chr4_3	CDS	5414537	5414613	5414537	ID=Msa0626030-mRNA-1:cds;Parent=Msa0626030-mRNA-1
chr4_3	CDS	5413813	5413865	5413813	ID=Msa0626030-mRNA-1:cds;Parent=Msa0626030-mRNA-1
chr4_3	CDS	5413662	5413716	5413662	ID=Msa0626030-mRNA-1:cds;Parent=Msa0626030-mRNA-1
chr4_3	CDS	5413327	5413542	5413327	ID=Msa0626030-mRNA-1:cds;Parent=Msa0626030-mRNA-1
chr4_3	three_prime_UTR	5412501	5413326	5412501	ID=Msa0626030-mRNA-1:three_prime_utr;Parent=Msa0626030-mRNA-1

Gene Sequence

>Msa0626030

TTCTTTCTTTCTTTACACACAAACATATCAATCAATAATCATCGCTTTCTCTCTCTCTCACGATTTGAGATGGGGATATATCTGAGTACCCCGAAAACAGAGAAGGCCTCTGAAGATGGTGAGAATGGCATGCTTCGCTATGGTTTGTCTTCCATGCAGGGTTGGCGTGCTTCTATGGAAGATGCTCATGCAGCTCATCCGTATTTGGACGAGTCTACGTCTTACTTTGGTGTTTATGATGGCCATGGAGGTAAAGCTGTTTCAAAATTCTGTGCCAAGTTTCTACACCAGCAGGTGCTTAGGCATGAAGCTTATTTAGCTGGAGATATAGCCACATCTTTACAGAAATCTTTCCTAAGAATGGATGAGATGATGCGCGGACAAAGAGGGTGGAGAGAATTGGCAGTCTTGGGAGATAAAATGGAAAAGTTGTCTGGTATGCTTGAGGGGTTTATATGGTCTCCCAGGAGTAGTGAAGCCAATGAACGTGCCGATGAGTGGGCTTTTGAGGAGGGCCATCACCCTCCAGTTTCAAAGACCCAATATTGCGGGCTAATGAGAATATTGCAAGTTCAGAATTGCTGGACCAAGGGACCCCATTCTGATTTCAGTGGGCCAAACTGTGGAAGCACGGCGTGTGTGGCTGTCATCAGAGGAAACAAACTTGTTGTTGCAAATGCTGGTGATTCTAGATGTGTGTTATCAAGGAAAGGCCAGGCACACAATTTGTCTAAAGATCACAAGCCTGATCTTGAGGTTGAGAAAGACAGGATTCTAAAAGCTGGCGGTTTCATCCAAGTTGGACGAGTCAATGGAAGTTTGAATTTGGCTAGAGCAATTGGAGATATGGAATTCAAGCAGAATAAGTATTTGCCTGCTGAAAAGCAGGTTGTGACTGCTGATCCTGACGTAACTTCAGTTGAGCTTTGCGAAGATGATGAGTTTCTTGTGATAGCTTGTGATGGGATATGGGATTGCATGTCCAGCCAGCAGCTTGTGGACTTTATACATGGCCAGTTAAAGACGGAGAATAAACTTTCTGTGGTTTGTGAGAAAGTATTCGATAGGTGCTTGGCACCAACAGCTGGTGGTGAGGGATGTGATAACATGACCATGATCTTGATTCAGTTCAAAAATCCTCTGACTTCAGATGCTTCTGTCACAGACCAGCCTGAGTCATCTGCTCAACCCACTCCTAATCCTCCGGCACAACAGTCTGAAGCTGACAGAAAGTTAGATTAA

Protein sequence

>Msa0626030

FFLSLHTNISINNHRFLSLSRFEMGIYLSTPKTEKASEDGENGMLRYGLSSMQGWRASMEDAHAAHPYLDESTSYFGVYDGHGGKAVSKFCAKFLHQQVLRHEAYLAGDIATSLQKSFLRMDEMMRGQRGWRELAVLGDKMEKLSGMLEGFIWSPRSSEANERADEWAFEEGHHPPVSKTQYCGLMRILQVQNCWTKGPHSDFSGPNCGSTACVAVIRGNKLVVANAGDSRCVLSRKGQAHNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDMEFKQNKYLPAEKQVVTADPDVTSVELCEDDEFLVIACDGIWDCMSSQQLVDFIHGQLKTENKLSVVCEKVFDRCLAPTAGGEGCDNMTMILIQFKNPLTSDASVTDQPESSAQPTPNPPAQQSEADRKLD*