AlfalfaGEDB | Msa0388050

M. sativa cultivar zhongmu-4 / Msa0388050

KEGG: -
GO: -
PFAM: PF13424.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0388050	XP_003600699.1	89.299	542	25	4	1	515	1	536	0.0	959

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0388050	sp\|Q6AZT7\|NPHP3_XENLA	35.821	134	85	1	135	267	1123	1256	1.11e-13	77.8
Msa0388050	sp\|Q6AZT7\|NPHP3_XENLA	24.324	259	168	2	159	393	955	1209	2.49e-13	76.6
Msa0388050	sp\|Q6AZT7\|NPHP3_XENLA	30.872	149	96	2	131	279	1077	1218	3.37e-12	73.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0388050	B7FNB2	89.299	542	25	4	1	515	1	536	0.0	959

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003640	Msa0388050	0.845342	4.311514e-59	-8.615850e-47
Msa0011960	Msa0388050	0.831505	1.607210e-55	-8.615850e-47
Msa0012040	Msa0388050	0.843942	1.027398e-58	-8.615850e-47
Msa0020300	Msa0388050	0.820024	8.535583e-53	-8.615850e-47
Msa0023000	Msa0388050	0.821624	3.656627e-53	-8.615850e-47
Msa0025730	Msa0388050	0.808183	3.510704e-50	-8.615850e-47
Msa0030380	Msa0388050	0.845292	4.449345e-59	-8.615850e-47
Msa0032580	Msa0388050	0.837221	5.907876e-57	-8.615850e-47
Msa0043660	Msa0388050	0.817800	2.732329e-52	-8.615850e-47
Msa0044710	Msa0388050	0.809572	1.771120e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0388050	MtrunA17_Chr3g0110241	89.299	542	25	4	1	515	1	536	0.0	959

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0388050	AT5G37590.1	50.471	531	225	12	1	502	1	522	4.37e-164	477
Msa0388050	AT5G37590.2	52.838	458	199	8	1	449	1	450	1.48e-151	442

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Find 115 sgRNAs with CRISPR-Local

Find 693 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTCTAGTTAGCTATG+AGG	0.603879	3_1:-92194067	Msa0388050:intron
AAAATCTTAGAGGATTCTTT+TGG	0.337670	3_1:-92194407	Msa0388050:CDS
AAAGAAGCTAAAGAAGGTTT+TGG	0.327034	3_1:-92195138	Msa0388050:CDS
AAATTACCTGGGAGAGGGAA+CGG	0.531256	3_1:+92191017	None:intergenic
AACACTGCGTTTGCAGAGGA+TGG	0.482628	3_1:-92195463	Msa0388050:CDS
AACCTAGGGCAGTTCTACAT+TGG	0.567557	3_1:-92194105	Msa0388050:CDS
AAGACTCCGTTCCCTCTCCC+AGG	0.551057	3_1:-92191023	Msa0388050:intron
AAGCATGCTCAAAGCTTGCT+TGG	0.451761	3_1:-92185505	Msa0388050:CDS
AATACAGGGATGGAAATCGT+TGG	0.608242	3_1:-92189452	Msa0388050:intron
AATATGATCTCCAGGAAGTA+AGG	0.453556	3_1:+92189240	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCTTATATCTGGACATGT+AGG	-	chr3_1:92185332-92185351	Msa0388050:three_prime_UTR	30.0%
TCAAATAAGTCGATCCAAAA+TGG	-	chr3_1:92185799-92185818	Msa0388050:intron	30.0%
ATCAAATTCCATGCCTTTAT+TGG	-	chr3_1:92186098-92186117	Msa0388050:intron	30.0%
TTTCTTCTACTACGTATGAA+AGG	+	chr3_1:92186175-92186194	None:intergenic	30.0%
CATGTGAAACTTAAGTTTCT+AGG	-	chr3_1:92186196-92186215	Msa0388050:intron	30.0%
CAGAAATGAAACCTATCTAT+AGG	+	chr3_1:92186228-92186247	None:intergenic	30.0%
ATGTTTCCAAAGATTTGCAA+TGG	-	chr3_1:92186399-92186418	Msa0388050:intron	30.0%
AAAGATTTGCAATGGAAACA+GGG	-	chr3_1:92186407-92186426	Msa0388050:intron	30.0%
TCCCATGGAAAACTATTTAA+TGG	-	chr3_1:92186587-92186606	Msa0388050:intron	30.0%
GGATTAAGAAAAATTGAGGA+TGG	-	chr3_1:92186778-92186797	Msa0388050:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	92185123	92197071	92185123	ID=Msa0388050;Name=Msa0388050
chr3_1	mRNA	92185123	92197071	92185123	ID=Msa0388050-mRNA-1;Parent=Msa0388050;Name=Msa0388050-mRNA-1;_AED=0.18;_eAED=0.18;_QI=32\|0.86\|0.93\|1\|0.93\|1\|16\|333\|515
chr3_1	exon	92185123	92185593	92185123	ID=Msa0388050-mRNA-1:exon:25943;Parent=Msa0388050-mRNA-1
chr3_1	exon	92185923	92185985	92185923	ID=Msa0388050-mRNA-1:exon:25942;Parent=Msa0388050-mRNA-1
chr3_1	exon	92187455	92187563	92187455	ID=Msa0388050-mRNA-1:exon:25941;Parent=Msa0388050-mRNA-1
chr3_1	exon	92188873	92189000	92188873	ID=Msa0388050-mRNA-1:exon:25940;Parent=Msa0388050-mRNA-1
chr3_1	exon	92189237	92189282	92189237	ID=Msa0388050-mRNA-1:exon:25939;Parent=Msa0388050-mRNA-1
chr3_1	exon	92189370	92189467	92189370	ID=Msa0388050-mRNA-1:exon:25938;Parent=Msa0388050-mRNA-1
chr3_1	exon	92189994	92190071	92189994	ID=Msa0388050-mRNA-1:exon:25937;Parent=Msa0388050-mRNA-1
chr3_1	exon	92191024	92191080	92191024	ID=Msa0388050-mRNA-1:exon:25936;Parent=Msa0388050-mRNA-1
chr3_1	exon	92191184	92191252	92191184	ID=Msa0388050-mRNA-1:exon:25935;Parent=Msa0388050-mRNA-1
chr3_1	exon	92192884	92192949	92192884	ID=Msa0388050-mRNA-1:exon:25934;Parent=Msa0388050-mRNA-1
chr3_1	exon	92193066	92193077	92193066	ID=Msa0388050-mRNA-1:exon:25933;Parent=Msa0388050-mRNA-1
chr3_1	exon	92194068	92194146	92194068	ID=Msa0388050-mRNA-1:exon:25932;Parent=Msa0388050-mRNA-1
chr3_1	exon	92194392	92194492	92194392	ID=Msa0388050-mRNA-1:exon:25931;Parent=Msa0388050-mRNA-1
chr3_1	exon	92195098	92195202	92195098	ID=Msa0388050-mRNA-1:exon:25930;Parent=Msa0388050-mRNA-1
chr3_1	exon	92195303	92195502	92195303	ID=Msa0388050-mRNA-1:exon:25929;Parent=Msa0388050-mRNA-1
chr3_1	exon	92196841	92197071	92196841	ID=Msa0388050-mRNA-1:exon:25928;Parent=Msa0388050-mRNA-1
chr3_1	five_prime_UTR	92197040	92197071	92197040	ID=Msa0388050-mRNA-1:five_prime_utr;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92196841	92197039	92196841	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92195303	92195502	92195303	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92195098	92195202	92195098	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92194392	92194492	92194392	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92194068	92194146	92194068	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92193066	92193077	92193066	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92192884	92192949	92192884	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92191184	92191252	92191184	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92191024	92191080	92191024	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92189994	92190071	92189994	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92189370	92189467	92189370	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92189237	92189282	92189237	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92188873	92189000	92188873	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92187455	92187563	92187455	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92185923	92185985	92185923	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	CDS	92185456	92185593	92185456	ID=Msa0388050-mRNA-1:cds;Parent=Msa0388050-mRNA-1
chr3_1	three_prime_UTR	92185123	92185455	92185123	ID=Msa0388050-mRNA-1:three_prime_utr;Parent=Msa0388050-mRNA-1

Gene Sequence

>Msa0388050

ATGTCTCCTCTGCGCATGGCAGTCTCTAATTTGCTTAAAAAACTTCGCTTTCCTTCTTCCCACACCTTCTCCGCCTCTAATTCATTGCCCATCTCATTTTCCGGTAAAAGATTTTCTCACTGGTATCAAACTGGAGAATATCGTTGGAGACAAAATCTTTGGGATCCTTGTTTATGGATTCTTATATCTGGACATGTAGTTGCGACTATGGGCATTAACACTGCGTTTGCAGAGGATGGAACGATCGAAACGTCTTCCGGTAATAGCACTGGCGATGACTTAAATGGATTAAGAAAAATTGAGGATGGTTCTGTAGCATCAAATATACATACAGCAAAATGGAGAGTCTTTACTGATAAAGCAAGAGAGCTTTTTTTTGAGGCATGTAGTTTCTTCCCTGGAAAATTAGATGATGCTGAAAGACTCTTCGTTGCTGCCATAAAAGAAGCTAAAGAAGGTTTTGGCGAGCAAGATCCGCATGTCGCGTCTTCATGCAACAATCTGGCAGAGTTGTACAGAGTCAAGAAGGCATTTGACAAAGCAGAACCGTTGTATTTGGAAGCTATCAAAATCTTAGAGGATTCTTTTGGTCCCGATGATGTAAGGGTTGCAGTTGCTGTTCACAACCTAGGGCAGTTCTACATTGGACAGCGGATGTTGGAAAAAGCTCTAGTTAGCTATGAGCGCGCTTTGAAGATAAAAAGGCGTGTTCTGGGGTATAATCATTCAGAATGTTCAGATACAATGTATCAAATCGGCATGGTTCTGTATCTACAAGGAAAAGAAAAGGATGCCGAGATCATTATTAAGGACTCCATAAGCATGTTAGAGAAAAGTGGCGAAGGGGAGTCAATTGTATGCATTAGAAGACTCCGTTCCCTCTCCCAGATATATTTGAAATTGCATCGTCTTGATGACGCTGAGATGGTCCAGAGAAAGATCCTGAATATAATGGAATTCTCAAAGGGATGGAAATCGTTGGACACAGTTATTGCAGCTGAATCCTTGGCCCTGACCCTACAAGCATCTTCTGAAACAAAACAATCAAAAGAGCTTCTTGAAAGATGTCTCGAGGTTCGGAGAGCCTTACTTCCTGGAGATCATATTCAGATTGGTGCAAACCTACTTCATCTTGCAAGAGTGGCAATGCTTGATTTCAGTCAGTACAAAAAATTGGATGTTTCTAGAGCTAAAGCTGAGCTTGATATAGCAAAGGATTATTTACATAATTCCATAAGGATTGCGCGTAAATGTTTAGATACGATATTAAAACAAAAAGACAAGTCGAAGAAAACTAGTGTGCGTGGACATACTAGTAAGGAAGCCCAAGCAGCACTTGTCATATTGAAAGGGGATATTAACGTCAAGGCTAAAGAGGCACTCCTTCAATGCATTGCTGCTTACAACGAGTTTGTTGTACATAAGAAGTCAATTACCGATTACCCTGAAATAAAGAACGAATATCTTTCATGTTTTAAGCATGCTCAAAGCTTGCTTGGCAATAAACTTGATGGAGAAGGTATCCAAAAGCTGAATCAAACATCGTGA

Protein sequence

>Msa0388050

MSPLRMAVSNLLKKLRFPSSHTFSASNSLPISFSGKRFSHWYQTGEYRWRQNLWDPCLWILISGHVVATMGINTAFAEDGTIETSSGNSTGDDLNGLRKIEDGSVASNIHTAKWRVFTDKARELFFEACSFFPGKLDDAERLFVAAIKEAKEGFGEQDPHVASSCNNLAELYRVKKAFDKAEPLYLEAIKILEDSFGPDDVRVAVAVHNLGQFYIGQRMLEKALVSYERALKIKRRVLGYNHSECSDTMYQIGMVLYLQGKEKDAEIIIKDSISMLEKSGEGESIVCIRRLRSLSQIYLKLHRLDDAEMVQRKILNIMEFSKGWKSLDTVIAAESLALTLQASSETKQSKELLERCLEVRRALLPGDHIQIGANLLHLARVAMLDFSQYKKLDVSRAKAELDIAKDYLHNSIRIARKCLDTILKQKDKSKKTSVRGHTSKEAQAALVILKGDINVKAKEALLQCIAAYNEFVVHKKSITDYPEIKNEYLSCFKHAQSLLGNKLDGEGIQKLNQTS*