Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647170 | KHN39834.1 | 76.415 | 106 | 25 | 0 | 1 | 106 | 621 | 726 | 4.21e-45 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647170 | sp|F4JJL8|SBT3F_ARATH | 49.038 | 104 | 52 | 1 | 2 | 104 | 634 | 737 | 4.13e-22 | 94.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0647170 | 0.808426 | 3.114789e-50 | -8.615850e-47 |
| Msa0018650 | Msa0647170 | 0.813527 | 2.447297e-51 | -8.615850e-47 |
| Msa0067140 | Msa0647170 | 0.805147 | 1.535965e-49 | -8.615850e-47 |
| Msa0112590 | Msa0647170 | 0.804539 | 2.058284e-49 | -8.615850e-47 |
| Msa0647170 | Msa0731940 | 0.801499 | 8.746483e-49 | -8.615850e-47 |
| Msa0647170 | Msa0806660 | 0.808952 | 2.405113e-50 | -8.615850e-47 |
| Msa0647170 | Msa0822870 | 0.846965 | 1.558900e-59 | -8.615850e-47 |
| Msa0647170 | Msa0833290 | 0.813116 | 3.012512e-51 | -8.615850e-47 |
| Msa0647170 | Msa0833300 | 0.803869 | 2.837315e-49 | -8.615850e-47 |
| Msa0647170 | Msa0844490 | 0.819598 | 1.067541e-52 | -8.615850e-47 |
| Msa0647170 | Msa0857680 | 0.805041 | 1.616495e-49 | -8.615850e-47 |
| Msa0647170 | Msa0880140 | 0.803269 | 3.778638e-49 | -8.615850e-47 |
| Msa0647170 | Msa0888420 | 0.801974 | 6.988422e-49 | -8.615850e-47 |
| Msa0647170 | Msa0897330 | 0.813512 | 2.465886e-51 | -8.615850e-47 |
| Msa0647170 | Msa0914760 | 0.803625 | 3.188226e-49 | -8.615850e-47 |
| Msa0647170 | Msa0953120 | 0.808115 | 3.628328e-50 | -8.615850e-47 |
| Msa0647170 | Msa0969520 | 0.814031 | 1.895103e-51 | -8.615850e-47 |
| Msa0647170 | Msa0974080 | 0.821164 | 4.669095e-53 | -8.615850e-47 |
| Msa0647170 | Msa0981370 | 0.809047 | 2.295234e-50 | -8.615850e-47 |
| Msa0647170 | Msa0991830 | 0.807823 | 4.187329e-50 | -8.615850e-47 |
| Msa0647170 | Msa1014540 | 0.825741 | 3.973901e-54 | -8.615850e-47 |
| Msa0647170 | Msa1060840 | 0.808342 | 3.246499e-50 | -8.615850e-47 |
| Msa0647170 | Msa1075540 | 0.806471 | 8.094148e-50 | -8.615850e-47 |
| Msa0647170 | Msa1112300 | 0.808009 | 3.822298e-50 | -8.615850e-47 |
| Msa0647170 | Msa1113170 | 0.814873 | 1.234155e-51 | -8.615850e-47 |
| Msa0647170 | Msa1149360 | 0.800888 | 1.166596e-48 | -8.615850e-47 |
| Msa0647170 | Msa1252140 | 0.814137 | 1.795350e-51 | -8.615850e-47 |
| Msa0647170 | Msa1286800 | 0.804527 | 2.069760e-49 | -8.615850e-47 |
| Msa0647170 | Msa1366810 | 0.817674 | 2.916786e-52 | -8.615850e-47 |
| Msa0157290 | Msa0647170 | 0.808232 | 3.426523e-50 | -8.615850e-47 |
| Msa0180500 | Msa0647170 | 0.814535 | 1.466640e-51 | -8.615850e-47 |
| Msa0329190 | Msa0647170 | 0.810238 | 1.273137e-50 | -8.615850e-47 |
| Msa0337900 | Msa0647170 | 0.809914 | 1.494696e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647170 | MtrunA17_Chr8g0377961 | 41.905 | 105 | 60 | 1 | 1 | 104 | 652 | 756 | 1.87e-19 | 83.6 |
| Msa0647170 | MtrunA17_Chr3g0120521 | 44.211 | 95 | 51 | 2 | 1 | 95 | 649 | 741 | 2.75e-18 | 80.1 |
| Msa0647170 | MtrunA17_Chr4g0057471 | 44.660 | 103 | 51 | 4 | 2 | 102 | 586 | 684 | 9.75e-17 | 75.9 |
| Msa0647170 | MtrunA17_Chr5g0407701 | 41.053 | 95 | 50 | 2 | 1 | 92 | 629 | 720 | 4.27e-16 | 73.9 |
| Msa0647170 | MtrunA17_Chr8g0354741 | 38.532 | 109 | 60 | 3 | 2 | 106 | 510 | 615 | 3.43e-15 | 71.2 |
| Msa0647170 | MtrunA17_Chr4g0057491 | 42.708 | 96 | 51 | 3 | 2 | 95 | 499 | 592 | 1.77e-14 | 69.3 |
| Msa0647170 | MtrunA17_Chr8g0354771 | 41.667 | 96 | 52 | 2 | 2 | 93 | 640 | 735 | 7.02e-14 | 67.4 |
| Msa0647170 | MtrunA17_Chr4g0026641 | 37.079 | 89 | 56 | 0 | 16 | 104 | 647 | 735 | 4.44e-13 | 65.1 |
| Msa0647170 | MtrunA17_Chr4g0057531 | 39.252 | 107 | 61 | 3 | 2 | 106 | 654 | 758 | 5.00e-13 | 65.1 |
| Msa0647170 | MtrunA17_Chr8g0369891 | 36.957 | 92 | 58 | 0 | 1 | 92 | 632 | 723 | 1.11e-12 | 63.9 |
| Msa0647170 | MtrunA17_Chr4g0026661 | 35.955 | 89 | 57 | 0 | 16 | 104 | 153 | 241 | 1.41e-12 | 63.2 |
| Msa0647170 | MtrunA17_Chr4g0057461 | 36.449 | 107 | 64 | 3 | 2 | 106 | 505 | 609 | 1.49e-12 | 63.5 |
| Msa0647170 | MtrunA17_Chr3g0103081 | 40.000 | 105 | 59 | 3 | 2 | 104 | 22 | 124 | 8.33e-12 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647170 | AT4G21640.1 | 49.038 | 104 | 52 | 1 | 2 | 104 | 606 | 709 | 4.74e-23 | 94.4 |
| Msa0647170 | AT1G66210.1 | 40.299 | 134 | 74 | 2 | 2 | 135 | 629 | 756 | 7.73e-22 | 90.9 |
| Msa0647170 | AT4G21650.1 | 46.154 | 104 | 55 | 1 | 2 | 104 | 639 | 742 | 1.22e-21 | 90.1 |
| Msa0647170 | AT4G21630.1 | 46.154 | 104 | 55 | 1 | 2 | 104 | 632 | 735 | 3.89e-21 | 88.6 |
| Msa0647170 | AT4G10540.1 | 42.308 | 104 | 60 | 0 | 1 | 104 | 642 | 745 | 8.89e-21 | 87.8 |
| Msa0647170 | AT1G32940.1 | 42.718 | 103 | 59 | 0 | 2 | 104 | 642 | 744 | 1.27e-20 | 87.4 |
| Msa0647170 | AT1G32940.4 | 42.718 | 103 | 59 | 0 | 2 | 104 | 591 | 693 | 1.30e-20 | 87.4 |
| Msa0647170 | AT1G32940.2 | 42.718 | 103 | 59 | 0 | 2 | 104 | 591 | 693 | 1.30e-20 | 87.4 |
| Msa0647170 | AT4G10550.4 | 43.269 | 104 | 59 | 0 | 1 | 104 | 589 | 692 | 2.84e-20 | 86.3 |
| Msa0647170 | AT4G10550.2 | 43.269 | 104 | 59 | 0 | 1 | 104 | 589 | 692 | 2.84e-20 | 86.3 |
| Msa0647170 | AT4G10550.1 | 43.269 | 104 | 59 | 0 | 1 | 104 | 645 | 748 | 3.35e-20 | 85.9 |
| Msa0647170 | AT4G10550.3 | 43.269 | 104 | 59 | 0 | 1 | 104 | 661 | 764 | 5.09e-20 | 85.5 |
| Msa0647170 | AT1G32970.1 | 40.385 | 104 | 62 | 0 | 1 | 104 | 601 | 704 | 1.58e-19 | 84.0 |
| Msa0647170 | AT1G32950.2 | 41.748 | 103 | 60 | 0 | 2 | 104 | 590 | 692 | 2.87e-19 | 83.6 |
| Msa0647170 | AT1G32950.1 | 41.748 | 103 | 60 | 0 | 2 | 104 | 641 | 743 | 3.35e-19 | 83.2 |
| Msa0647170 | AT1G32980.1 | 43.956 | 91 | 51 | 0 | 1 | 91 | 95 | 185 | 1.11e-18 | 78.6 |
| Msa0647170 | AT4G10510.1 | 39.423 | 104 | 63 | 0 | 1 | 104 | 632 | 735 | 2.29e-18 | 80.9 |
| Msa0647170 | AT4G10510.4 | 39.423 | 104 | 63 | 0 | 1 | 104 | 588 | 691 | 2.46e-18 | 80.9 |
| Msa0647170 | AT4G10510.3 | 39.423 | 104 | 63 | 0 | 1 | 104 | 644 | 747 | 2.51e-18 | 80.9 |
| Msa0647170 | AT4G10510.2 | 39.423 | 104 | 63 | 0 | 1 | 104 | 573 | 676 | 2.67e-18 | 80.5 |
| Msa0647170 | AT1G32960.1 | 38.835 | 103 | 63 | 0 | 2 | 104 | 645 | 747 | 7.84e-18 | 79.3 |
| Msa0647170 | AT1G66220.1 | 41.176 | 102 | 60 | 0 | 3 | 104 | 625 | 726 | 1.10e-17 | 79.0 |
| Msa0647170 | AT4G21326.1 | 47.222 | 108 | 56 | 1 | 2 | 108 | 567 | 674 | 4.24e-17 | 77.0 |
| Msa0647170 | AT5G11940.1 | 40.659 | 91 | 54 | 0 | 14 | 104 | 644 | 734 | 1.17e-16 | 75.9 |
| Msa0647170 | AT4G21323.1 | 43.820 | 89 | 49 | 1 | 17 | 104 | 687 | 775 | 3.92e-16 | 74.3 |
| Msa0647170 | AT4G10530.1 | 37.255 | 102 | 64 | 0 | 3 | 104 | 616 | 717 | 5.18e-15 | 71.2 |
| Msa0647170 | AT4G10520.1 | 37.255 | 102 | 64 | 0 | 3 | 104 | 625 | 726 | 2.39e-14 | 69.3 |
| Msa0647170 | AT5G59810.1 | 40.741 | 81 | 47 | 1 | 1 | 81 | 654 | 733 | 3.32e-12 | 63.2 |
| Msa0647170 | AT4G26330.1 | 33.636 | 110 | 67 | 3 | 1 | 104 | 608 | 717 | 2.11e-11 | 60.8 |
| Msa0647170 | AT4G26330.2 | 33.636 | 110 | 67 | 3 | 1 | 104 | 594 | 703 | 2.16e-11 | 60.8 |
| Msa0647170 | AT5G45650.2 | 40.909 | 88 | 45 | 3 | 8 | 90 | 665 | 750 | 7.29e-11 | 59.3 |
| Msa0647170 | AT5G45650.1 | 40.909 | 88 | 45 | 3 | 8 | 90 | 665 | 750 | 7.29e-11 | 59.3 |
Find 27 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCATATTCAACATGAATT+TGG | 0.136631 | 4_3:-53128540 | None:intergenic |
| GTCAAGGGTTGTTCCAATTC+AGG | 0.252758 | 4_3:-53128581 | None:intergenic |
| TTCTATTACTATTCCTGAAT+TGG | 0.276872 | 4_3:+53128568 | Msa0647170:CDS |
| TTCAAAGCAGATTCTCATTC+AGG | 0.276938 | 4_3:+53128768 | Msa0647170:CDS |
| TCGCTAAATCTTAAGATTGT+TGG | 0.305004 | 4_3:-53128695 | None:intergenic |
| TTCATATTCAACATGAATTT+GGG | 0.328070 | 4_3:-53128539 | None:intergenic |
| TTGATGTTCTTCAAGAATGA+AGG | 0.403609 | 4_3:+53131342 | Msa0647170:CDS |
| CACACGATTCTTTCGTGTTG+TGG | 0.413062 | 4_3:-53131391 | None:intergenic |
| ACTGTTAATGATATGCCAAT+TGG | 0.424724 | 4_3:-53128668 | None:intergenic |
| AATTCAGGAATAGTAATAGA+AGG | 0.455026 | 4_3:-53128566 | None:intergenic |
| ATCAGTGTTGTTGTAGCCCA+TGG | 0.468093 | 4_3:-53128474 | None:intergenic |
| ATTAAAGAAAATGAAATTCA+AGG | 0.470687 | 4_3:+53128721 | Msa0647170:CDS |
| ACACGATTCTTTCGTGTTGT+GGG | 0.473283 | 4_3:-53131390 | None:intergenic |
| GACGGTTCTTGTTACTGTCA+AGG | 0.475907 | 4_3:-53128597 | None:intergenic |
| GCTCGTGTTGTGGCTCCAAT+TGG | 0.476907 | 4_3:+53128653 | Msa0647170:CDS |
| ACGGTTCTTGTTACTGTCAA+GGG | 0.495975 | 4_3:-53128596 | None:intergenic |
| TACCTACATTGCTCGTGTTG+TGG | 0.527563 | 4_3:+53128643 | Msa0647170:CDS |
| GGTGATTTAAAGCACTTGGT+AGG | 0.532873 | 4_3:-53128518 | None:intergenic |
| CGAAAGAATCGTGTGTCGAA+TGG | 0.544960 | 4_3:+53131399 | Msa0647170:CDS |
| TTTGGGTGATTTAAAGCACT+TGG | 0.553065 | 4_3:-53128522 | None:intergenic |
| CAGGAATAGTAATAGAAGGC+AGG | 0.557324 | 4_3:-53128562 | None:intergenic |
| AATGAAGGAAAATACTTGCA+AGG | 0.568502 | 4_3:+53131357 | Msa0647170:CDS |
| TCTTTGTGTGAAGGTTTGAG+TGG | 0.575664 | 4_3:+53131316 | Msa0647170:intron |
| ACAAGAACCGTCACTAATGT+TGG | 0.581190 | 4_3:+53128608 | Msa0647170:CDS |
| AGCCACAACACGAGCAATGT+AGG | 0.605055 | 4_3:-53128645 | None:intergenic |
| AATATGACCAACATTAGTGA+CGG | 0.605652 | 4_3:-53128615 | None:intergenic |
| GAAAATACTTGCAAGGAACA+AGG | 0.627042 | 4_3:+53131364 | Msa0647170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATTTAACTGTTTTAT+TGG | + | chr4_3:53130235-53130254 | Msa0647170:intron | 10.0% |
| !!! | AAAAATTTAACTGTTTTATT+GGG | + | chr4_3:53130236-53130255 | Msa0647170:intron | 10.0% |
| !! | AAAACAACAAAATAAAAAAT+AGG | - | chr4_3:53130881-53130900 | None:intergenic | 10.0% |
| !! | ATTAAAGAAAATGAAATTCA+AGG | + | chr4_3:53128721-53128740 | Msa0647170:CDS | 15.0% |
| !!! | TTTAAAATATTTGATTTTGC+CGG | + | chr4_3:53129289-53129308 | Msa0647170:intron | 15.0% |
| !! | CATATATTAAAATGATTGTT+TGG | - | chr4_3:53129322-53129341 | None:intergenic | 15.0% |
| !!! | CAAACAATCATTTTAATATA+TGG | + | chr4_3:53129320-53129339 | Msa0647170:intron | 15.0% |
| !!! | AATCATTTTAATATATGGAT+TGG | + | chr4_3:53129325-53129344 | Msa0647170:intron | 15.0% |
| !!! | ATTAGTACAACAATTTTTAA+AGG | + | chr4_3:53129678-53129697 | Msa0647170:intron | 15.0% |
| !!! | CTTTATTTTGTATTAACTAA+TGG | + | chr4_3:53129712-53129731 | Msa0647170:intron | 15.0% |
| !!! | TTTGTTTCTATAATTGTTTT+AGG | + | chr4_3:53129929-53129948 | Msa0647170:intron | 15.0% |
| !!! | AAAATTTAACTGTTTTATTG+GGG | + | chr4_3:53130237-53130256 | Msa0647170:intron | 15.0% |
| !!! | AATATTCTAAAGCTAAAAAT+TGG | - | chr4_3:53131145-53131164 | None:intergenic | 15.0% |
| !! | TTCATATTCAACATGAATTT+GGG | - | chr4_3:53128542-53128561 | None:intergenic | 20.0% |
| !! | TATGTGAATTCAACATAAAT+AGG | - | chr4_3:53129125-53129144 | None:intergenic | 20.0% |
| !!! | GATACCTTTTGAAAATAAAA+TGG | + | chr4_3:53129231-53129250 | Msa0647170:intron | 20.0% |
| !!! | ATGTCCATTTTATTTTCAAA+AGG | - | chr4_3:53129238-53129257 | None:intergenic | 20.0% |
| !!! | TGATTTTGTAGAAAGAAAAT+TGG | + | chr4_3:53129590-53129609 | Msa0647170:intron | 20.0% |
| !! | ACTTAAATGCAAAATTACAA+CGG | + | chr4_3:53129646-53129665 | Msa0647170:intron | 20.0% |
| !! | CTTAATTGATCTTAAAAGTT+CGG | + | chr4_3:53129795-53129814 | Msa0647170:intron | 20.0% |
| !! | CTAAAAAGACTTAAAAAGAA+AGG | + | chr4_3:53129995-53130014 | Msa0647170:intron | 20.0% |
| !! | AGAAAGGAAAATAAAACAAA+CGG | + | chr4_3:53130011-53130030 | Msa0647170:intron | 20.0% |
| !!! | AAAGAAGAAGTATAAATGAA+CGG | + | chr4_3:53130042-53130061 | Msa0647170:intron | 20.0% |
| !!! | TTTTGTGAAAAACAACTTTT+AGG | - | chr4_3:53130395-53130414 | None:intergenic | 20.0% |
| !! | TATTGGGTAAAGAAATATTA+AGG | - | chr4_3:53130529-53130548 | None:intergenic | 20.0% |
| !!! | TTTTGTTGTTATTGTTGAAA+AGG | + | chr4_3:53130653-53130672 | Msa0647170:intron | 20.0% |
| !!! | TTTTGTTGTTATTGTTGAAA+AGG | + | chr4_3:53130653-53130672 | Msa0647170:intron | 20.0% |
| !!! | TATACATTTTATCAAACACT+TGG | - | chr4_3:53131063-53131082 | None:intergenic | 20.0% |
| !!! | TATATGATTTTGAATGTGAA+AGG | + | chr4_3:53131088-53131107 | Msa0647170:intron | 20.0% |
| !!! | ATATGATTTTGAATGTGAAA+GGG | + | chr4_3:53131089-53131108 | Msa0647170:intron | 20.0% |
| !!! | TTTTATGTTGACGTAAATAA+TGG | + | chr4_3:53131231-53131250 | Msa0647170:intron | 20.0% |
| !!! | TTTTTTTTTTCTTTGTGTGA+AGG | + | chr4_3:53131307-53131326 | Msa0647170:intron | 20.0% |
| ! | GTTCATATTCAACATGAATT+TGG | - | chr4_3:53128543-53128562 | None:intergenic | 25.0% |
| ! | AATTCAGGAATAGTAATAGA+AGG | - | chr4_3:53128569-53128588 | None:intergenic | 25.0% |
| ! | TTCTATTACTATTCCTGAAT+TGG | + | chr4_3:53128568-53128587 | Msa0647170:CDS | 25.0% |
| ! | ACTACAGAATAAACTGTTAA+TGG | - | chr4_3:53128833-53128852 | None:intergenic | 25.0% |
| ! | ATGTTGAATTCACATATACT+CGG | + | chr4_3:53129129-53129148 | Msa0647170:intron | 25.0% |
| ! | ATGATTGTTTGGTTAAAATC+CGG | - | chr4_3:53129311-53129330 | None:intergenic | 25.0% |
| ! | AGAAAGAAAATTGGACTAAA+TGG | + | chr4_3:53129599-53129618 | Msa0647170:intron | 25.0% |
| !! | GTTGTAATTTTGCATTTAAG+TGG | - | chr4_3:53129647-53129666 | None:intergenic | 25.0% |
| !!! | TTTTGACTAACAAAGTAGAT+AGG | - | chr4_3:53129859-53129878 | None:intergenic | 25.0% |
| ! | AATCAAATTGACTGATTACA+AGG | + | chr4_3:53129877-53129896 | Msa0647170:intron | 25.0% |
| !! | AAGAAGAAGTATAAATGAAC+GGG | + | chr4_3:53130043-53130062 | Msa0647170:intron | 25.0% |
| ! | GGGTAAAATTAGAAAAAAGT+GGG | - | chr4_3:53130317-53130336 | None:intergenic | 25.0% |
| ! | AGGGTAAAATTAGAAAAAAG+TGG | - | chr4_3:53130318-53130337 | None:intergenic | 25.0% |
| ! | ATGAATATGTTTGGTTATTG+AGG | - | chr4_3:53130343-53130362 | None:intergenic | 25.0% |
| ! | CCTCTTTATATGAATATGTT+TGG | - | chr4_3:53130352-53130371 | None:intergenic | 25.0% |
| ! | CCAAACATATTCATATAAAG+AGG | + | chr4_3:53130349-53130368 | Msa0647170:intron | 25.0% |
| !! | AAAACGAAGTGATTGTTATT+GGG | - | chr4_3:53130545-53130564 | None:intergenic | 25.0% |
| ! | TACATACTTACATTCTTTGT+TGG | - | chr4_3:53130708-53130727 | None:intergenic | 25.0% |
| ! | AAGAATGTAAGTATGTAAGA+AGG | + | chr4_3:53130711-53130730 | Msa0647170:intron | 25.0% |
| ! | AAGAAGGAAGAACAAATTTA+TGG | + | chr4_3:53130727-53130746 | Msa0647170:intron | 25.0% |
| ! | TACATACTTACATTCTTTGT+TGG | - | chr4_3:53130708-53130727 | None:intergenic | 25.0% |
| ! | AAGAATGTAAGTATGTAAGA+AGG | + | chr4_3:53130711-53130730 | Msa0647170:intron | 25.0% |
| ! | AAGAAGGAAGAACAAATTTA+TGG | + | chr4_3:53130727-53130746 | Msa0647170:intron | 25.0% |
| ! | AGAAGGAAGAACAAATTTAT+GGG | + | chr4_3:53130728-53130747 | Msa0647170:intron | 25.0% |
| !!! | TACTTTTCAAGTCTACATTT+TGG | - | chr4_3:53130928-53130947 | None:intergenic | 25.0% |
| AATATGACCAACATTAGTGA+CGG | - | chr4_3:53128618-53128637 | None:intergenic | 30.0% | |
| ACTGTTAATGATATGCCAAT+TGG | - | chr4_3:53128671-53128690 | None:intergenic | 30.0% | |
| TCGCTAAATCTTAAGATTGT+TGG | - | chr4_3:53128698-53128717 | None:intergenic | 30.0% | |
| ACAATGGCTATAACTAATCA+TGG | - | chr4_3:53128884-53128903 | None:intergenic | 30.0% | |
| TTATAGCCATTGTCACATAA+TGG | + | chr4_3:53128891-53128910 | Msa0647170:intron | 30.0% | |
| TTCTTACCATTATGTGACAA+TGG | - | chr4_3:53128900-53128919 | None:intergenic | 30.0% | |
| TGTTGAATTCACATATACTC+GGG | + | chr4_3:53129130-53129149 | Msa0647170:intron | 30.0% | |
| TCAAGAGTAAGGATCATAAA+CGG | - | chr4_3:53129180-53129199 | None:intergenic | 30.0% | |
| TCTATCACATTTCAAGAGTA+AGG | - | chr4_3:53129191-53129210 | None:intergenic | 30.0% | |
| GTGATAGAATCAAATCTCAA+TGG | + | chr4_3:53129203-53129222 | Msa0647170:intron | 30.0% | |
| TGGACATAAAATGAATGTTG+AGG | + | chr4_3:53129251-53129270 | Msa0647170:intron | 30.0% | |
| GGACATAAAATGAATGTTGA+GGG | + | chr4_3:53129252-53129271 | Msa0647170:intron | 30.0% | |
| GACATAAAATGAATGTTGAG+GGG | + | chr4_3:53129253-53129272 | Msa0647170:intron | 30.0% | |
| ACATAAAATGAATGTTGAGG+GGG | + | chr4_3:53129254-53129273 | Msa0647170:intron | 30.0% | |
| !!! | ATTGGTTTTGTCACCTAAAA+TGG | + | chr4_3:53129343-53129362 | Msa0647170:intron | 30.0% |
| GATTGTAAGCTTGAAAAACT+AGG | - | chr4_3:53129765-53129784 | None:intergenic | 30.0% | |
| ACTAACAAAGTAGATAGGAA+GGG | - | chr4_3:53129854-53129873 | None:intergenic | 30.0% | |
| ATTAGAGATGTGAAGTTGAA+AGG | + | chr4_3:53130081-53130100 | Msa0647170:intron | 30.0% | |
| !!! | TATTTTAATTCAGGGCAGTT+AGG | - | chr4_3:53130216-53130235 | None:intergenic | 30.0% |
| !! | CTGTTTTATTGGGGTAATTT+TGG | + | chr4_3:53130246-53130265 | Msa0647170:intron | 30.0% |
| AAAAAAGTGGGAAGTTGAAA+TGG | - | chr4_3:53130305-53130324 | None:intergenic | 30.0% | |
| TGGGTAAAGAAATATTAAGG+TGG | - | chr4_3:53130526-53130545 | None:intergenic | 30.0% | |
| CAAAACGAAGTGATTGTTAT+TGG | - | chr4_3:53130546-53130565 | None:intergenic | 30.0% | |
| ! | GTTGTTATTGTTGAAAAGGA+AGG | + | chr4_3:53130657-53130676 | Msa0647170:intron | 30.0% |
| ! | GTTGTTATTGTTGAAAAGGA+AGG | + | chr4_3:53130657-53130676 | Msa0647170:intron | 30.0% |
| TGATAACAAAGTTGTAGACT+TGG | + | chr4_3:53130982-53131001 | Msa0647170:intron | 30.0% | |
| ! | TGTTTGTTACTCTGAATGTT+TGG | + | chr4_3:53131266-53131285 | Msa0647170:intron | 30.0% |
| TTGATGTTCTTCAAGAATGA+AGG | + | chr4_3:53131342-53131361 | Msa0647170:CDS | 30.0% | |
| AATGAAGGAAAATACTTGCA+AGG | + | chr4_3:53131357-53131376 | Msa0647170:CDS | 30.0% | |
| !!! | GGTAGGAGAGCATTTTAATA+AGG | - | chr4_3:53128504-53128523 | None:intergenic | 35.0% |
| ! | TTTGGGTGATTTAAAGCACT+TGG | - | chr4_3:53128525-53128544 | None:intergenic | 35.0% |
| TTCAAAGCAGATTCTCATTC+AGG | + | chr4_3:53128768-53128787 | Msa0647170:CDS | 35.0% | |
| TCTCATTCAGGTACTTGATT+TGG | + | chr4_3:53128780-53128799 | Msa0647170:intron | 35.0% | |
| CTCATTCAGGTACTTGATTT+GGG | + | chr4_3:53128781-53128800 | Msa0647170:intron | 35.0% | |
| ! | CTATGTCGTTGAACCATTTT+AGG | - | chr4_3:53129359-53129378 | None:intergenic | 35.0% |
| ! | AAACATGAGTGAATTTTCGC+AGG | - | chr4_3:53129406-53129425 | None:intergenic | 35.0% |
| CATTGCATATAAAAGAGACG+TGG | - | chr4_3:53129454-53129473 | None:intergenic | 35.0% | |
| AATTGTGTGCCACACATATT+AGG | - | chr4_3:53129507-53129526 | None:intergenic | 35.0% | |
| ATGATTATCTTCACTCGTAG+TGG | + | chr4_3:53129735-53129754 | Msa0647170:intron | 35.0% | |
| GACTAACAAAGTAGATAGGA+AGG | - | chr4_3:53129855-53129874 | None:intergenic | 35.0% | |
| GAATTTCAACTGCTTCTGAT+GGG | + | chr4_3:53130268-53130287 | Msa0647170:intron | 35.0% | |
| ATGTTTGGTTATTGAGGCAA+GGG | - | chr4_3:53130337-53130356 | None:intergenic | 35.0% | |
| TATGTTTGGTTATTGAGGCA+AGG | - | chr4_3:53130338-53130357 | None:intergenic | 35.0% | |
| AGAAAAAAGTGAGAACGAGA+AGG | - | chr4_3:53130443-53130462 | None:intergenic | 35.0% | |
| GAAAATACTTGCAAGGAACA+AGG | + | chr4_3:53131364-53131383 | Msa0647170:CDS | 35.0% | |
| ! | GGTGATTTAAAGCACTTGGT+AGG | - | chr4_3:53128521-53128540 | None:intergenic | 40.0% |
| CAGGAATAGTAATAGAAGGC+AGG | - | chr4_3:53128565-53128584 | None:intergenic | 40.0% | |
| ACGGTTCTTGTTACTGTCAA+GGG | - | chr4_3:53128599-53128618 | None:intergenic | 40.0% | |
| ACAAGAACCGTCACTAATGT+TGG | + | chr4_3:53128608-53128627 | Msa0647170:CDS | 40.0% | |
| !! | AGGTACTTGATTTGGGAAGA+TGG | + | chr4_3:53128788-53128807 | Msa0647170:intron | 40.0% |
| !! | AAGATGGATTGCATGAAGTG+AGG | + | chr4_3:53128804-53128823 | Msa0647170:intron | 40.0% |
| TAAAATGAATGTTGAGGGGG+TGG | + | chr4_3:53129257-53129276 | Msa0647170:intron | 40.0% | |
| AAAATGAATGTTGAGGGGGT+GGG | + | chr4_3:53129258-53129277 | Msa0647170:intron | 40.0% | |
| ! | TCAGGGCAGTTAGGTTATTT+TGG | - | chr4_3:53130207-53130226 | None:intergenic | 40.0% |
| GGAATTTCAACTGCTTCTGA+TGG | + | chr4_3:53130267-53130286 | Msa0647170:intron | 40.0% | |
| AAAAAGTGAGAACGAGAAGG+TGG | - | chr4_3:53130440-53130459 | None:intergenic | 40.0% | |
| GAGTGAGAGAAAGGGAAATA+AGG | - | chr4_3:53130475-53130494 | None:intergenic | 40.0% | |
| ! | GACTTTGAGAGTGAGAGAAA+GGG | - | chr4_3:53130483-53130502 | None:intergenic | 40.0% |
| ! | TGACTTTGAGAGTGAGAGAA+AGG | - | chr4_3:53130484-53130503 | None:intergenic | 40.0% |
| TGTTGAAAAGGAAGGAAAGC+AGG | + | chr4_3:53130665-53130684 | Msa0647170:intron | 40.0% | |
| GTTGAAAAGGAAGGAAAGCA+GGG | + | chr4_3:53130666-53130685 | Msa0647170:intron | 40.0% | |
| TTGAAAAGGAAGGAAAGCAG+GGG | + | chr4_3:53130667-53130686 | Msa0647170:intron | 40.0% | |
| TGTTGAAAAGGAAGGAAAGC+AGG | + | chr4_3:53130665-53130684 | Msa0647170:intron | 40.0% | |
| GTTGAAAAGGAAGGAAAGCA+GGG | + | chr4_3:53130666-53130685 | Msa0647170:intron | 40.0% | |
| TTGAAAAGGAAGGAAAGCAG+GGG | + | chr4_3:53130667-53130686 | Msa0647170:intron | 40.0% | |
| TCTTTGTGTGAAGGTTTGAG+TGG | + | chr4_3:53131316-53131335 | Msa0647170:intron | 40.0% | |
| ACACGATTCTTTCGTGTTGT+GGG | - | chr4_3:53131393-53131412 | None:intergenic | 40.0% | |
| GTCAAGGGTTGTTCCAATTC+AGG | - | chr4_3:53128584-53128603 | None:intergenic | 45.0% | |
| GACGGTTCTTGTTACTGTCA+AGG | - | chr4_3:53128600-53128619 | None:intergenic | 45.0% | |
| TACCTACATTGCTCGTGTTG+TGG | + | chr4_3:53128643-53128662 | Msa0647170:CDS | 45.0% | |
| ! | GCACTTGACTCGTTGATATG+CGG | + | chr4_3:53129086-53129105 | Msa0647170:intron | 45.0% |
| AAATGAATGTTGAGGGGGTG+GGG | + | chr4_3:53129259-53129278 | Msa0647170:intron | 45.0% | |
| AGCCGAATTACATGCTTAGC+TGG | + | chr4_3:53129481-53129500 | Msa0647170:intron | 45.0% | |
| GGCCAGCTAAGCATGTAATT+CGG | - | chr4_3:53129486-53129505 | None:intergenic | 45.0% | |
| ! | CTTAGCTGGCCTAATATGTG+TGG | + | chr4_3:53129495-53129514 | Msa0647170:intron | 45.0% |
| CACACGATTCTTTCGTGTTG+TGG | - | chr4_3:53131394-53131413 | None:intergenic | 45.0% | |
| CGAAAGAATCGTGTGTCGAA+TGG | + | chr4_3:53131399-53131418 | Msa0647170:CDS | 45.0% | |
| !!! | TTTAATTTTAAGTTAATAAA+TGG | + | chr4_3:53129952-53129971 | Msa0647170:intron | 5.0% |
| !!! | AAATTTTTTATTTTAATTCA+GGG | - | chr4_3:53130224-53130243 | None:intergenic | 5.0% |
| !!! | TAAATTTTTTATTTTAATTC+AGG | - | chr4_3:53130225-53130244 | None:intergenic | 5.0% |
| AGCCACAACACGAGCAATGT+AGG | - | chr4_3:53128648-53128667 | None:intergenic | 50.0% | |
| GCTCGTGTTGTGGCTCCAAT+TGG | + | chr4_3:53128653-53128672 | Msa0647170:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 53128476 | 53131446 | 53128476 | ID=Msa0647170;Name=Msa0647170 |
| chr4_3 | mRNA | 53128476 | 53131446 | 53128476 | ID=Msa0647170-mRNA-1;Parent=Msa0647170;Name=Msa0647170-mRNA-1;_AED=0.60;_eAED=0.60;_QI=0|0|0|0.5|1|1|2|0|143 |
| chr4_3 | exon | 53128476 | 53128789 | 53128476 | ID=Msa0647170-mRNA-1:exon:13202;Parent=Msa0647170-mRNA-1 |
| chr4_3 | exon | 53131329 | 53131446 | 53131329 | ID=Msa0647170-mRNA-1:exon:13203;Parent=Msa0647170-mRNA-1 |
| chr4_3 | CDS | 53128476 | 53128789 | 53128476 | ID=Msa0647170-mRNA-1:cds;Parent=Msa0647170-mRNA-1 |
| chr4_3 | CDS | 53131329 | 53131446 | 53131329 | ID=Msa0647170-mRNA-1:cds;Parent=Msa0647170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
