AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0018650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018650 MtrunA17_Chr7g0268611 96.606 383 13 0 1 383 1 383 0.0 770
Msa0018650 MtrunA17_Chr7g0268621 67.647 374 119 2 8 380 6 378 0.0 538
Msa0018650 MtrunA17_Chr8g0350371 49.322 369 187 0 8 376 6 374 1.09e-137 397
Msa0018650 MtrunA17_Chr5g0412881 50.136 369 184 0 8 376 6 374 6.83e-137 395
Msa0018650 MtrunA17_Chr3g0125701 49.864 369 185 0 8 376 7 375 4.87e-133 386
Msa0018650 MtrunA17_Chr3g0125711 49.051 369 188 0 8 376 7 375 1.04e-130 380
Msa0018650 MtrunA17_Chr3g0125691 49.322 369 187 0 8 376 7 375 1.34e-130 380
Msa0018650 MtrunA17_Chr3g0139441 45.910 379 199 2 9 382 40 417 5.16e-122 359
Msa0018650 MtrunA17_Chr6g0485621 44.648 383 203 4 9 383 33 414 1.26e-119 353
Msa0018650 MtrunA17_Chr1g0182991 45.263 380 198 5 9 382 26 401 1.39e-119 353
Msa0018650 MtrunA17_Chr1g0147221 46.296 378 196 3 9 381 43 418 1.48e-119 353
Msa0018650 MtrunA17_Chr7g0262591 43.272 379 203 4 9 382 25 396 5.52e-116 343
Msa0018650 MtrunA17_Chr1g0148801 43.421 380 204 4 9 383 17 390 8.03e-115 340
Msa0018650 MtrunA17_Chr1g0169111 44.800 375 198 4 9 376 103 475 8.82e-115 343
Msa0018650 MtrunA17_Chr7g0262471 40.193 311 174 4 77 382 214 517 1.38e-78 251
Msa0018650 MtrunA17_Chr4g0025641 51.000 200 98 0 8 207 16 215 6.57e-70 219
Msa0018650 MtrunA17_Chr4g0025651 45.882 170 91 1 207 376 1 169 7.60e-47 158
Msa0018650 MtrunA17_Chr3g0129991 46.154 117 63 0 68 184 3 119 2.70e-33 120
Msa0018650 MtrunA17_Chr8g0352481 25.957 235 140 5 7 214 3 230 1.07e-15 78.2
Msa0018650 MtrunA17_Chr8g0352461 24.686 239 147 6 7 217 3 236 2.30e-15 77.4
Msa0018650 MtrunA17_Chr3g0091441 25.506 247 137 6 4 214 9 244 5.04e-14 73.2
Msa0018650 MtrunA17_Chr3g0130001 53.488 43 20 0 4 46 2 44 6.17e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018650 AT1G48910.1 47.606 376 197 0 8 383 5 380 1.76e-139 402
Msa0018650 AT1G21430.1 45.692 383 202 5 1 380 1 380 1.46e-123 362
Msa0018650 AT1G04610.1 46.194 381 195 5 9 381 38 416 1.31e-121 359
Msa0018650 AT4G13260.1 45.040 373 199 2 9 376 29 400 8.64e-119 351
Msa0018650 AT5G25620.1 45.669 381 197 4 9 382 33 410 1.47e-117 348
Msa0018650 AT5G25620.2 45.669 381 197 4 9 382 33 410 2.59e-117 348
Msa0018650 AT5G43890.1 43.684 380 205 5 9 381 26 403 1.99e-116 345
Msa0018650 AT1G04180.1 44.063 379 202 5 9 381 26 400 2.08e-115 342
Msa0018650 AT4G28720.1 43.307 381 206 6 9 381 26 404 3.77e-115 342
Msa0018650 AT4G32540.1 43.850 374 197 5 9 376 22 388 5.75e-114 338
Msa0018650 AT4G32540.2 44.267 375 196 5 9 376 22 390 9.26e-114 338
Msa0018650 AT5G11320.1 44.504 373 194 4 9 376 18 382 7.64e-112 333
Msa0018650 AT2G33230.1 44.094 381 202 5 9 381 33 410 1.38e-108 325
Msa0018650 AT5G11320.2 44.582 323 167 3 9 326 18 333 1.35e-95 290
Msa0018650 AT4G13260.2 46.454 282 146 1 9 285 29 310 5.84e-93 281
Msa0018650 AT4G13260.3 41.356 295 166 3 87 376 5 297 4.65e-78 243
Msa0018650 AT1G62560.2 27.615 239 132 7 5 213 10 237 2.57e-16 80.5
Msa0018650 AT1G62560.1 27.966 236 129 7 8 213 13 237 3.31e-16 80.5
Msa0018650 AT1G65860.1 27.542 236 135 4 5 213 10 236 3.59e-16 80.1
Msa0018650 AT1G12160.1 24.728 368 171 12 8 342 12 306 3.35e-14 74.3
Msa0018650 AT1G12140.1 30.058 173 104 4 49 213 74 237 8.94e-14 72.8
Msa0018650 AT1G12140.3 30.058 173 104 4 49 213 74 237 8.94e-14 72.8
Msa0018650 AT5G07800.1 27.413 259 139 8 5 226 13 259 7.21e-13 70.1
Msa0018650 AT1G62540.1 28.270 237 132 5 5 213 10 236 1.65e-12 68.9
Msa0018650 AT5G61290.1 27.386 241 135 6 1 205 9 245 1.70e-12 68.9
Msa0018650 AT1G62540.3 28.270 237 132 5 5 213 10 236 1.91e-12 68.9
Msa0018650 AT1G62540.2 28.270 237 132 5 5 213 10 236 2.05e-12 68.9
Msa0018650 AT1G62620.2 22.944 231 142 4 8 205 13 240 3.80e-12 67.8
Msa0018650 AT1G62620.1 22.944 231 142 4 8 205 13 240 5.83e-12 67.4
Msa0018650 AT1G12200.2 32.143 140 79 4 80 213 113 242 1.18e-11 66.2
Msa0018650 AT1G12200.1 32.143 140 79 4 80 213 113 242 1.52e-11 66.2
Msa0018650 AT1G12140.2 27.602 221 145 6 49 258 74 290 3.23e-11 65.1
Msa0018650 AT1G62570.1 26.396 197 134 6 75 262 107 301 8.63e-11 63.5
Msa0018650 AT5G45180.1 26.250 240 132 10 5 205 10 243 9.57e-11 63.5

Find 92 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAAGGGGTATGCTGAATT+TGG 0.142332 1_1:+31532930 Msa0018650:CDS
CTCTTCAACCCTTCAATTTC+AGG 0.149369 1_1:-31532492 None:intergenic
TACGGGGATGTCACGAATTA+TGG 0.154022 1_1:+31533024 Msa0018650:CDS
GTTGTTGGGTCTGGGAATTC+TGG 0.176673 1_1:+31532585 Msa0018650:CDS
GTACTTGACCTTCATATAAA+AGG 0.212639 1_1:-31533070 None:intergenic
TCAAGGGGTATGCTGAATTT+GGG 0.240991 1_1:+31532931 Msa0018650:CDS
GTTGTTGGAGCAGGCCCTTC+TGG 0.254075 1_1:+31532081 Msa0018650:CDS
CATGTTCTTGTTGTTGGGTC+TGG 0.258715 1_1:+31532576 Msa0018650:CDS
GATGGTGATGCTTAGTAAAA+TGG 0.306091 1_1:+31532999 Msa0018650:CDS
AATTAAGTCTCGAGAGTTAA+AGG 0.307124 1_1:+31533131 Msa0018650:CDS
TGTATTGGGCCCCATATGTT+TGG 0.314085 1_1:-31535040 None:intergenic
TCTCTTTCGAGGATTATATA+AGG 0.314818 1_1:-31532141 None:intergenic
ATGCTTAGTAAAATGGTTTA+CGG 0.339605 1_1:+31533006 Msa0018650:CDS
GAAGGTGAAGGCTAAGAATA+AGG 0.345400 1_1:+31532395 Msa0018650:CDS
CAAGTTCTAATTCTTGTATT+GGG 0.347155 1_1:-31535054 None:intergenic
GCAAGTTCTAATTCTTGTAT+TGG 0.352121 1_1:-31535055 None:intergenic
AATGAAAGAGTGATAGTTGT+TGG 0.360593 1_1:+31532066 Msa0018650:CDS
AAGTATAACCTCCAAACATA+TGG 0.364262 1_1:+31535029 Msa0018650:three_prime_UTR
GGGAAAGTGATTCATTCAAC+TGG 0.376100 1_1:+31532522 Msa0018650:CDS
GATGAACATGTTCTTGTTGT+TGG 0.376175 1_1:+31532570 Msa0018650:CDS
TGCTTAGTAAAATGGTTTAC+GGG 0.386664 1_1:+31533007 Msa0018650:CDS
ATGATGAAGGTTCTGAGAAA+TGG 0.387033 1_1:+31532373 Msa0018650:CDS
ATCAACCCACAAGTGGCTTA+AGG 0.388610 1_1:+31534287 Msa0018650:CDS
AGCCAAGTTACCCTATTCAT+TGG 0.388713 1_1:+31534747 Msa0018650:CDS
ATGTTCTTGTTGTTGGGTCT+GGG 0.391709 1_1:+31532577 Msa0018650:CDS
AAGGCTAAGAATAAGGATTC+TGG 0.392445 1_1:+31532402 Msa0018650:CDS
CATTCAACTGGGTTTAAGAA+TGG 0.393718 1_1:+31532534 Msa0018650:CDS
CCTTCAATTTCAGGTACAAA+AGG 0.400011 1_1:-31532483 None:intergenic
CTATCAAGGAGAGGTTTCTA+TGG 0.400558 1_1:+31534800 Msa0018650:CDS
ACGGGGATGTCACGAATTAT+GGG 0.428718 1_1:+31533025 Msa0018650:CDS
TATATTGTGTTGGACTATCA+AGG 0.438069 1_1:+31534786 Msa0018650:CDS
ATTCAACTGGGTTTAAGAAT+GGG 0.438492 1_1:+31532535 Msa0018650:CDS
TAAGGATTCTGGTGAGGTTG+AGG 0.446777 1_1:+31532413 Msa0018650:CDS
CTTAAGCATTCTATTTCAGC+TGG 0.447488 1_1:-31534189 None:intergenic
ATGAATAGGGTAACTTGGCT+TGG 0.450552 1_1:-31534744 None:intergenic
AAGGTTCCAACGTCAATAAT+AGG 0.451735 1_1:-31533102 None:intergenic
TTCGAGGATTATATAAGGAA+TGG 0.455797 1_1:-31532136 None:intergenic
TTCCAATGAATAGGGTAACT+TGG 0.456789 1_1:-31534749 None:intergenic
TTCTGGCATGGAAATTGCAT+TGG 0.469456 1_1:+31532602 Msa0018650:CDS
ATGAACATGTTCTTGTTGTT+GGG 0.471420 1_1:+31532571 Msa0018650:CDS
TACTTGACCTTCATATAAAA+GGG 0.473078 1_1:-31533069 None:intergenic
GCAAACCTTAAGCCACTTGT+GGG 0.480163 1_1:-31534292 None:intergenic
ATTGGGCCCCATATGTTTGG+AGG 0.485159 1_1:-31535037 None:intergenic
AGTATAACCTCCAAACATAT+GGG 0.487162 1_1:+31535030 Msa0018650:three_prime_UTR
TGAATAGGGTAACTTGGCTT+GGG 0.488661 1_1:-31534743 None:intergenic
GGATTATATAAGGAATGGAT+TGG 0.489614 1_1:-31532131 None:intergenic
GAATACCATCATCATTCAAA+AGG 0.492685 1_1:-31534721 None:intergenic
TCTGATGAAGTATTTGTCAA+TGG 0.510851 1_1:+31532960 Msa0018650:CDS
CAAGGGGTATGCTGAATTTG+GGG 0.511286 1_1:+31532932 Msa0018650:CDS
TGGGGTTGGTAGGCCTAGTG+AGG 0.512474 1_1:+31533044 Msa0018650:CDS
GCTGAAATAGAATGCTTAAG+TGG 0.513060 1_1:+31534192 Msa0018650:CDS
CTTGCTTCGAACAACGATTG+AGG 0.514809 1_1:-31532649 None:intergenic
CGTTGATTAGATTTCAGTTG+AGG 0.525399 1_1:+31534940 Msa0018650:three_prime_UTR
ATATAAAAGGGACCCTCACT+AGG 0.526447 1_1:-31533057 None:intergenic
CTTCAATTTCAGGTACAAAA+GGG 0.526666 1_1:-31532482 None:intergenic
TGCAAACCTTAAGCCACTTG+TGG 0.528385 1_1:-31534293 None:intergenic
CTCAATCGTTGTTCGAAGCA+AGG 0.531935 1_1:+31532650 Msa0018650:CDS
GGAATGTATGATGGAAAAGA+AGG 0.532095 1_1:-31532261 None:intergenic
AAGTTACCCTATTCATTGGA+AGG 0.536623 1_1:+31534751 Msa0018650:CDS
GTGGGTTGATCTCTTGAAGC+CGG 0.536695 1_1:-31534274 None:intergenic
GAGAATGCAAAGTATGATGA+AGG 0.540824 1_1:+31532360 Msa0018650:CDS
GGTGAGGTTGAGGAATATGA+AGG 0.542585 1_1:+31532423 Msa0018650:CDS
AGGTTGAGGAATATGAAGGA+AGG 0.551335 1_1:+31532427 Msa0018650:CDS
ATGTATGATGGAAAAGAAGG+TGG 0.552215 1_1:-31532258 None:intergenic
GATGGAAAAGAAGGTGGGAA+TGG 0.556044 1_1:-31532252 None:intergenic
GAAAATAAAGATCAAAGGAG+AGG 0.566865 1_1:+31534991 Msa0018650:three_prime_UTR
AGAGTGATAGTTGTTGGAGC+AGG 0.568437 1_1:+31532072 Msa0018650:CDS
TTTATGAAAATAAAGATCAA+AGG 0.573792 1_1:+31534986 Msa0018650:three_prime_UTR
TCACGAATTATGGGGTTGGT+AGG 0.576228 1_1:+31533034 Msa0018650:CDS
GTATTTGTCAATGGAGATGG+TGG 0.579490 1_1:+31532969 Msa0018650:CDS
TGGGTCTGGGAATTCTGGCA+TGG 0.586713 1_1:+31532590 Msa0018650:CDS
CGGGGATGTCACGAATTATG+GGG 0.588744 1_1:+31533026 Msa0018650:CDS
GGGGTTGGTAGGCCTAGTGA+GGG 0.589928 1_1:+31533045 Msa0018650:CDS
GGAAAGTGATTCATTCAACT+GGG 0.594965 1_1:+31532523 Msa0018650:CDS
TGTATGATGGAAAAGAAGGT+GGG 0.596307 1_1:-31532257 None:intergenic
AGTTACCCTATTCATTGGAA+GGG 0.596925 1_1:+31534752 Msa0018650:CDS
GAAGTATTTGTCAATGGAGA+TGG 0.597497 1_1:+31532966 Msa0018650:CDS
GCTGCTACTGAGAGACCAGA+AGG 0.602816 1_1:-31532096 None:intergenic
GAAGGTGGGAATGGTTTGTG+AGG 0.606122 1_1:-31532243 None:intergenic
TGTGTTGGACTATCAAGGAG+AGG 0.616154 1_1:+31534791 Msa0018650:CDS
GGAGATGGTGGATTTAGTGA+TGG 0.618594 1_1:+31532981 Msa0018650:CDS
TTCTGAGAAATGGAAGGTGA+AGG 0.623363 1_1:+31532383 Msa0018650:CDS
GATGTCACGAATTATGGGGT+TGG 0.629113 1_1:+31533030 Msa0018650:CDS
TCAACTGTTCTGTGATACAG+AGG 0.635504 1_1:-31532339 None:intergenic
GCATTGGATCTTATCAACCA+TGG 0.635858 1_1:+31532618 Msa0018650:CDS
AAGTATCCTATTATTGACGT+TGG 0.642218 1_1:+31533096 Msa0018650:CDS
TCAAGAGATCAACCCACAAG+TGG 0.648193 1_1:+31534280 Msa0018650:CDS
GCTTAGTAAAATGGTTTACG+GGG 0.650434 1_1:+31533008 Msa0018650:CDS
CTGCTACTGAGAGACCAGAA+GGG 0.656151 1_1:-31532095 None:intergenic
TAAGAATAAGGATTCTGGTG+AGG 0.661843 1_1:+31532407 Msa0018650:CDS
GTATAACCTCCAAACATATG+GGG 0.683885 1_1:+31535031 Msa0018650:three_prime_UTR
TGAAGGTTCTGAGAAATGGA+AGG 0.688803 1_1:+31532377 Msa0018650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAATTTAAAAAAAA+AGG - chr1_1:31533727-31533746 None:intergenic 0.0%
!! TAGAATAAATATATAATTGA+CGG + chr1_1:31532740-31532759 Msa0018650:intron 10.0%
!! AAAATAAATAATATAAATGC+AGG + chr1_1:31532897-31532916 Msa0018650:intron 10.0%
!!! TTGATTTTAATGATAATTTA+TGG - chr1_1:31533258-31533277 None:intergenic 10.0%
!!! TATATTTTTCATATCATTAA+AGG + chr1_1:31533778-31533797 Msa0018650:intron 10.0%
!! AAAAAAAAAAAAACATGATA+AGG - chr1_1:31534524-31534543 None:intergenic 10.0%
!!! TAAACTAATTAATTATCTTT+TGG + chr1_1:31534684-31534703 Msa0018650:intron 10.0%
!!! TATTGTAAAAACTTTTCTTT+AGG - chr1_1:31532285-31532304 None:intergenic 15.0%
!! AGAATAAATATATAATTGAC+GGG + chr1_1:31532741-31532760 Msa0018650:intron 15.0%
!! ATGTATTCAAGTATAATTTA+AGG - chr1_1:31533290-31533309 None:intergenic 15.0%
!! AAAATAAAGGATTAAATTGA+TGG + chr1_1:31533331-31533350 Msa0018650:intron 15.0%
!!! TATTTGACTTTAATAGTTTA+AGG + chr1_1:31533378-31533397 Msa0018650:intron 15.0%
!! AACAAATTTATTTAAGTGAA+AGG + chr1_1:31533913-31533932 Msa0018650:intron 15.0%
!!! ATATCATTTTACTAAAAAGA+TGG + chr1_1:31533960-31533979 Msa0018650:intron 15.0%
!!! CAAAAAAGAATAGTTTTTTT+AGG + chr1_1:31534551-31534570 Msa0018650:intron 15.0%
!!! TAATTAATTATCTTTTGGTA+GGG + chr1_1:31534689-31534708 Msa0018650:intron 15.0%
!! TTTATGAAAATAAAGATCAA+AGG + chr1_1:31534986-31535005 Msa0018650:three_prime_UTR 15.0%
!! ATTAAAAAGTGAATAAATTG+TGG - chr1_1:31535082-31535101 None:intergenic 15.0%
!!! CATATATCAATTTATTTTGA+CGG - chr1_1:31535117-31535136 None:intergenic 15.0%
!! ACAAAAAAGAGAAGAAATAA+TGG + chr1_1:31532035-31532054 Msa0018650:exon 20.0%
!! TATACTTGAATACATCAATT+TGG + chr1_1:31533295-31533314 Msa0018650:intron 20.0%
!! TCCATAAACAAGTAAAATAA+AGG + chr1_1:31533318-31533337 Msa0018650:intron 20.0%
!!! TCCTTTATTTTACTTGTTTA+TGG - chr1_1:31533322-31533341 None:intergenic 20.0%
!!! TTCAGAAGATTTTTTTTTGA+GGG - chr1_1:31533528-31533547 None:intergenic 20.0%
!!! TTTCAGAAGATTTTTTTTTG+AGG - chr1_1:31533529-31533548 None:intergenic 20.0%
!! AGAATGACATATATTTCAAT+AGG - chr1_1:31533641-31533660 None:intergenic 20.0%
!! ATTGAAATATATGTCATTCT+AGG + chr1_1:31533641-31533660 Msa0018650:intron 20.0%
!! TACCTAAAATAACATTTAGA+TGG + chr1_1:31533874-31533893 Msa0018650:intron 20.0%
!! ACCTAAAATAACATTTAGAT+GGG + chr1_1:31533875-31533894 Msa0018650:intron 20.0%
!! TAATGTATGTTACATGAAAA+TGG + chr1_1:31534599-31534618 Msa0018650:intron 20.0%
!! AATGTATGTTACATGAAAAT+GGG + chr1_1:31534600-31534619 Msa0018650:intron 20.0%
!!! CTAATTAATTATCTTTTGGT+AGG + chr1_1:31534688-31534707 Msa0018650:intron 20.0%
!! AAAAATGGTTTATATTGTGT+TGG + chr1_1:31534776-31534795 Msa0018650:CDS 20.0%
!!! ACACATTTTAATCACATAAT+TGG - chr1_1:31535155-31535174 None:intergenic 20.0%
!!! AAAATTGTTTTGCATCACTA+TGG + chr1_1:31532163-31532182 Msa0018650:CDS 25.0%
!!! TTTTCTTTAGGAATGTATGA+TGG - chr1_1:31532273-31532292 None:intergenic 25.0%
! ATGCTTAGTAAAATGGTTTA+CGG + chr1_1:31533006-31533025 Msa0018650:CDS 25.0%
! TACTTGACCTTCATATAAAA+GGG - chr1_1:31533072-31533091 None:intergenic 25.0%
!! TTTTATATGAAGGTCAAGTA+CGG + chr1_1:31533072-31533091 Msa0018650:CDS 25.0%
!! AACCATATTAGGCAAATTTT+AGG - chr1_1:31533219-31533238 None:intergenic 25.0%
!!! ATTGACTTTGAAACCATATT+AGG - chr1_1:31533230-31533249 None:intergenic 25.0%
!!! ATCTTCTCTGTCTTTTTTTA+AGG + chr1_1:31533570-31533589 Msa0018650:intron 25.0%
!! AAATATATGTCATTCTAGGA+AGG + chr1_1:31533645-31533664 Msa0018650:intron 25.0%
! CCTAAAATAACATTTAGATG+GGG + chr1_1:31533876-31533895 Msa0018650:intron 25.0%
! AGGTTATCTAACTATAAACA+AGG + chr1_1:31533933-31533952 Msa0018650:intron 25.0%
!! GAAAAGTGCAAATATAATTG+TGG + chr1_1:31534112-31534131 Msa0018650:intron 25.0%
! ATTGTGTTATGTGTTATGTT+AGG + chr1_1:31534161-31534180 Msa0018650:intron 25.0%
!! ATATATGGTCACATTTCTTT+TGG - chr1_1:31534637-31534656 None:intergenic 25.0%
! AATATACGTCAACGTATATA+TGG - chr1_1:31534652-31534671 None:intergenic 25.0%
!! ACTTCATAGATTTTTCATGA+TGG - chr1_1:31534867-31534886 None:intergenic 25.0%
!! CAAGTTCTAATTCTTGTATT+GGG - chr1_1:31535057-31535076 None:intergenic 25.0%
AATGAAAGAGTGATAGTTGT+TGG + chr1_1:31532066-31532085 Msa0018650:CDS 30.0%
GGATTATATAAGGAATGGAT+TGG - chr1_1:31532134-31532153 None:intergenic 30.0%
TTCGAGGATTATATAAGGAA+TGG - chr1_1:31532139-31532158 None:intergenic 30.0%
TCTCTTTCGAGGATTATATA+AGG - chr1_1:31532144-31532163 None:intergenic 30.0%
! CAAAACAATTTTCTCTTTCG+AGG - chr1_1:31532155-31532174 None:intergenic 30.0%
! CTTCAATTTCAGGTACAAAA+GGG - chr1_1:31532485-31532504 None:intergenic 30.0%
! CTTTTGTACCTGAAATTGAA+GGG + chr1_1:31532484-31532503 Msa0018650:CDS 30.0%
ATTCAACTGGGTTTAAGAAT+GGG + chr1_1:31532535-31532554 Msa0018650:CDS 30.0%
!! ATGAACATGTTCTTGTTGTT+GGG + chr1_1:31532571-31532590 Msa0018650:CDS 30.0%
! TCTGATGAAGTATTTGTCAA+TGG + chr1_1:31532960-31532979 Msa0018650:CDS 30.0%
TGCTTAGTAAAATGGTTTAC+GGG + chr1_1:31533007-31533026 Msa0018650:CDS 30.0%
GTACTTGACCTTCATATAAA+AGG - chr1_1:31533073-31533092 None:intergenic 30.0%
AAGTATCCTATTATTGACGT+TGG + chr1_1:31533096-31533115 Msa0018650:CDS 30.0%
! TCGAGACTTAATTTTGTGAA+AGG - chr1_1:31533124-31533143 None:intergenic 30.0%
AATTAAGTCTCGAGAGTTAA+AGG + chr1_1:31533131-31533150 Msa0018650:CDS 30.0%
ACGTTAGAGATAATTGACAT+TGG + chr1_1:31533155-31533174 Msa0018650:intron 30.0%
! ATAATTGACATTGGTTGCTT+TGG + chr1_1:31533164-31533183 Msa0018650:intron 30.0%
CACCTAAAATTTGCCTAATA+TGG + chr1_1:31533214-31533233 Msa0018650:intron 30.0%
TAATAGTTTAAGGACCAAAG+TGG + chr1_1:31533388-31533407 Msa0018650:intron 30.0%
!!! CCCCATCTAAATGTTATTTT+AGG - chr1_1:31533879-31533898 None:intergenic 30.0%
AAGAATGTCCTCTTCAAAAA+TGG + chr1_1:31534216-31534235 Msa0018650:CDS 30.0%
GAATAGATCAATATCAGCAA+CGG + chr1_1:31534414-31534433 Msa0018650:intron 30.0%
! GATTACCTTTTGAATGATGA+TGG + chr1_1:31534716-31534735 Msa0018650:CDS 30.0%
GAATACCATCATCATTCAAA+AGG - chr1_1:31534724-31534743 None:intergenic 30.0%
! TTTTTCCCTTCCAATGAATA+GGG - chr1_1:31534760-31534779 None:intergenic 30.0%
!!! TTTTTTCCCTTCCAATGAAT+AGG - chr1_1:31534761-31534780 None:intergenic 30.0%
ATTCATTGGAAGGGAAAAAA+TGG + chr1_1:31534761-31534780 Msa0018650:CDS 30.0%
TATATTGTGTTGGACTATCA+AGG + chr1_1:31534786-31534805 Msa0018650:CDS 30.0%
GAAAATAAAGATCAAAGGAG+AGG + chr1_1:31534991-31535010 Msa0018650:three_prime_UTR 30.0%
AAGTATAACCTCCAAACATA+TGG + chr1_1:31535029-31535048 Msa0018650:three_prime_UTR 30.0%
AGTATAACCTCCAAACATAT+GGG + chr1_1:31535030-31535049 Msa0018650:three_prime_UTR 30.0%
! GCAAGTTCTAATTCTTGTAT+TGG - chr1_1:31535058-31535077 None:intergenic 30.0%
!!! GCTCGCAAAATTGTTTTTTG+AGG - chr1_1:31532221-31532240 None:intergenic 35.0%
! TGTATGATGGAAAAGAAGGT+GGG - chr1_1:31532260-31532279 None:intergenic 35.0%
! ATGTATGATGGAAAAGAAGG+TGG - chr1_1:31532261-31532280 None:intergenic 35.0%
! GGAATGTATGATGGAAAAGA+AGG - chr1_1:31532264-31532283 None:intergenic 35.0%
GAGAATGCAAAGTATGATGA+AGG + chr1_1:31532360-31532379 Msa0018650:CDS 35.0%
!! ATGATGAAGGTTCTGAGAAA+TGG + chr1_1:31532373-31532392 Msa0018650:CDS 35.0%
AAGGCTAAGAATAAGGATTC+TGG + chr1_1:31532402-31532421 Msa0018650:CDS 35.0%
TAAGAATAAGGATTCTGGTG+AGG + chr1_1:31532407-31532426 Msa0018650:CDS 35.0%
! GGAATATGAAGGAAGGTTTT+TGG + chr1_1:31532434-31532453 Msa0018650:CDS 35.0%
! CCTTCAATTTCAGGTACAAA+AGG - chr1_1:31532486-31532505 None:intergenic 35.0%
! CCTTTTGTACCTGAAATTGA+AGG + chr1_1:31532483-31532502 Msa0018650:CDS 35.0%
! AAGGGTTGAAGAGTTTTACT+GGG + chr1_1:31532502-31532521 Msa0018650:CDS 35.0%
GGAAAGTGATTCATTCAACT+GGG + chr1_1:31532523-31532542 Msa0018650:CDS 35.0%
CATTCAACTGGGTTTAAGAA+TGG + chr1_1:31532534-31532553 Msa0018650:CDS 35.0%
! GATGAACATGTTCTTGTTGT+TGG + chr1_1:31532570-31532589 Msa0018650:CDS 35.0%
! GTTAGCTGTTGATTATACGT+AGG + chr1_1:31532815-31532834 Msa0018650:intron 35.0%
! GAAGTATTTGTCAATGGAGA+TGG + chr1_1:31532966-31532985 Msa0018650:CDS 35.0%
! GATGGTGATGCTTAGTAAAA+TGG + chr1_1:31532999-31533018 Msa0018650:CDS 35.0%
GCTTAGTAAAATGGTTTACG+GGG + chr1_1:31533008-31533027 Msa0018650:CDS 35.0%
AAGGTTCCAACGTCAATAAT+AGG - chr1_1:31533105-31533124 None:intergenic 35.0%
CTTAAGCATTCTATTTCAGC+TGG - chr1_1:31534192-31534211 None:intergenic 35.0%
GCTGAAATAGAATGCTTAAG+TGG + chr1_1:31534192-31534211 Msa0018650:CDS 35.0%
!! GCAATTGACCATTTTTGAAG+AGG - chr1_1:31534227-31534246 None:intergenic 35.0%
! GACTCTATTATTTTCTGCAC+CGG + chr1_1:31534255-31534274 Msa0018650:CDS 35.0%
TTCCAATGAATAGGGTAACT+TGG - chr1_1:31534752-31534771 None:intergenic 35.0%
AAGTTACCCTATTCATTGGA+AGG + chr1_1:31534751-31534770 Msa0018650:CDS 35.0%
AGTTACCCTATTCATTGGAA+GGG + chr1_1:31534752-31534771 Msa0018650:CDS 35.0%
! CGTTGATTAGATTTCAGTTG+AGG + chr1_1:31534940-31534959 Msa0018650:three_prime_UTR 35.0%
GTATAACCTCCAAACATATG+GGG + chr1_1:31535031-31535050 Msa0018650:three_prime_UTR 35.0%
TCAACTGTTCTGTGATACAG+AGG - chr1_1:31532342-31532361 None:intergenic 40.0%
!! TGAAGGTTCTGAGAAATGGA+AGG + chr1_1:31532377-31532396 Msa0018650:CDS 40.0%
! TTCTGAGAAATGGAAGGTGA+AGG + chr1_1:31532383-31532402 Msa0018650:CDS 40.0%
GAAGGTGAAGGCTAAGAATA+AGG + chr1_1:31532395-31532414 Msa0018650:CDS 40.0%
AGGTTGAGGAATATGAAGGA+AGG + chr1_1:31532427-31532446 Msa0018650:CDS 40.0%
!!! TGAAGGAAGGTTTTTGGTTG+TGG + chr1_1:31532440-31532459 Msa0018650:CDS 40.0%
CTCTTCAACCCTTCAATTTC+AGG - chr1_1:31532495-31532514 None:intergenic 40.0%
! GAAGGGTTGAAGAGTTTTAC+TGG + chr1_1:31532501-31532520 Msa0018650:CDS 40.0%
GGGAAAGTGATTCATTCAAC+TGG + chr1_1:31532522-31532541 Msa0018650:CDS 40.0%
!! ATGTTCTTGTTGTTGGGTCT+GGG + chr1_1:31532577-31532596 Msa0018650:CDS 40.0%
TTCTGGCATGGAAATTGCAT+TGG + chr1_1:31532602-31532621 Msa0018650:CDS 40.0%
GCATTGGATCTTATCAACCA+TGG + chr1_1:31532618-31532637 Msa0018650:CDS 40.0%
TAATTGACGGGATGAATGAG+TGG + chr1_1:31532753-31532772 Msa0018650:intron 40.0%
! TGCAGGTTCACATTTTGTCA+AGG + chr1_1:31532914-31532933 Msa0018650:intron 40.0%
! GCAGGTTCACATTTTGTCAA+GGG + chr1_1:31532915-31532934 Msa0018650:intron 40.0%
! CAGGTTCACATTTTGTCAAG+GGG + chr1_1:31532916-31532935 Msa0018650:intron 40.0%
! TCAAGGGGTATGCTGAATTT+GGG + chr1_1:31532931-31532950 Msa0018650:CDS 40.0%
GTATTTGTCAATGGAGATGG+TGG + chr1_1:31532969-31532988 Msa0018650:CDS 40.0%
ATATAAAAGGGACCCTCACT+AGG - chr1_1:31533060-31533079 None:intergenic 40.0%
! TGAGGGTCCCTTTTATATGA+AGG + chr1_1:31533062-31533081 Msa0018650:CDS 40.0%
! TCAAGCGAGTTACTTTGCTT+GGG - chr1_1:31534010-31534029 None:intergenic 40.0%
! TTCAAGCGAGTTACTTTGCT+TGG - chr1_1:31534011-31534030 None:intergenic 40.0%
TGTTGTTGTGACATGACGAA+TGG + chr1_1:31534136-31534155 Msa0018650:intron 40.0%
GTTGTTGTGACATGACGAAT+GGG + chr1_1:31534137-31534156 Msa0018650:intron 40.0%
TGAATAGGGTAACTTGGCTT+GGG - chr1_1:31534746-31534765 None:intergenic 40.0%
ATGAATAGGGTAACTTGGCT+TGG - chr1_1:31534747-31534766 None:intergenic 40.0%
AGCCAAGTTACCCTATTCAT+TGG + chr1_1:31534747-31534766 Msa0018650:CDS 40.0%
CTATCAAGGAGAGGTTTCTA+TGG + chr1_1:31534800-31534819 Msa0018650:CDS 40.0%
AGAGTGATAGTTGTTGGAGC+AGG + chr1_1:31532072-31532091 Msa0018650:CDS 45.0%
GATGGAAAAGAAGGTGGGAA+TGG - chr1_1:31532255-31532274 None:intergenic 45.0%
TAAGGATTCTGGTGAGGTTG+AGG + chr1_1:31532413-31532432 Msa0018650:CDS 45.0%
GGTGAGGTTGAGGAATATGA+AGG + chr1_1:31532423-31532442 Msa0018650:CDS 45.0%
!!! AGGTTTTTGGTTGTGGCTAG+TGG + chr1_1:31532447-31532466 Msa0018650:CDS 45.0%
!! CATGTTCTTGTTGTTGGGTC+TGG + chr1_1:31532576-31532595 Msa0018650:CDS 45.0%
!! CGATTGAGGTTTTAGCACCA+TGG - chr1_1:31532638-31532657 None:intergenic 45.0%
CTTGCTTCGAACAACGATTG+AGG - chr1_1:31532652-31532671 None:intergenic 45.0%
CTCAATCGTTGTTCGAAGCA+AGG + chr1_1:31532650-31532669 Msa0018650:CDS 45.0%
! GTCAAGGGGTATGCTGAATT+TGG + chr1_1:31532930-31532949 Msa0018650:CDS 45.0%
! CAAGGGGTATGCTGAATTTG+GGG + chr1_1:31532932-31532951 Msa0018650:CDS 45.0%
!! GGAGATGGTGGATTTAGTGA+TGG + chr1_1:31532981-31533000 Msa0018650:CDS 45.0%
TACGGGGATGTCACGAATTA+TGG + chr1_1:31533024-31533043 Msa0018650:CDS 45.0%
ACGGGGATGTCACGAATTAT+GGG + chr1_1:31533025-31533044 Msa0018650:CDS 45.0%
GATGTCACGAATTATGGGGT+TGG + chr1_1:31533030-31533049 Msa0018650:CDS 45.0%
! TCACGAATTATGGGGTTGGT+AGG + chr1_1:31533034-31533053 Msa0018650:CDS 45.0%
! CAAGCGAGTTACTTTGCTTG+GGG - chr1_1:31534009-31534028 None:intergenic 45.0%
TCAAGAGATCAACCCACAAG+TGG + chr1_1:31534280-31534299 Msa0018650:CDS 45.0%
ATCAACCCACAAGTGGCTTA+AGG + chr1_1:31534287-31534306 Msa0018650:CDS 45.0%
GCAAACCTTAAGCCACTTGT+GGG - chr1_1:31534295-31534314 None:intergenic 45.0%
TGCAAACCTTAAGCCACTTG+TGG - chr1_1:31534296-31534315 None:intergenic 45.0%
TGTGTTGGACTATCAAGGAG+AGG + chr1_1:31534791-31534810 Msa0018650:CDS 45.0%
TGTATTGGGCCCCATATGTT+TGG - chr1_1:31535043-31535062 None:intergenic 45.0%
CTGCTACTGAGAGACCAGAA+GGG - chr1_1:31532098-31532117 None:intergenic 50.0%
! GAAGGTGGGAATGGTTTGTG+AGG - chr1_1:31532246-31532265 None:intergenic 50.0%
GTTGTTGGGTCTGGGAATTC+TGG + chr1_1:31532585-31532604 Msa0018650:CDS 50.0%
CGGGGATGTCACGAATTATG+GGG + chr1_1:31533026-31533045 Msa0018650:CDS 50.0%
TTAAGGACCAAAGTGGCGAG+AGG + chr1_1:31533395-31533414 Msa0018650:intron 50.0%
TAAGGACCAAAGTGGCGAGA+GGG + chr1_1:31533396-31533415 Msa0018650:intron 50.0%
!! GGCGAGAGGGTATTGGTTTA+AGG + chr1_1:31533409-31533428 Msa0018650:intron 50.0%
!! GTGGGTTGATCTCTTGAAGC+CGG - chr1_1:31534277-31534296 None:intergenic 50.0%
ATTGGGCCCCATATGTTTGG+AGG - chr1_1:31535040-31535059 None:intergenic 50.0%
GCTGCTACTGAGAGACCAGA+AGG - chr1_1:31532099-31532118 None:intergenic 55.0%
TGGGTCTGGGAATTCTGGCA+TGG + chr1_1:31532590-31532609 Msa0018650:CDS 55.0%
CCAATACCCTCTCGCCACTT+TGG - chr1_1:31533405-31533424 None:intergenic 55.0%
! CCAAAGTGGCGAGAGGGTAT+TGG + chr1_1:31533402-31533421 Msa0018650:intron 55.0%
GTTGTTGGAGCAGGCCCTTC+TGG + chr1_1:31532081-31532100 Msa0018650:CDS 60.0%
!! TGGGGTTGGTAGGCCTAGTG+AGG + chr1_1:31533044-31533063 Msa0018650:CDS 60.0%
!! GGGGTTGGTAGGCCTAGTGA+GGG + chr1_1:31533045-31533064 Msa0018650:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 31531986 31535196 31531986 ID=Msa0018650;Name=Msa0018650
chr1_1 mRNA 31531986 31535196 31531986 ID=Msa0018650-mRNA-1;Parent=Msa0018650;Name=Msa0018650-mRNA-1;_AED=0.03;_eAED=0.03;_QI=68|1|1|1|0.75|0.6|5|281|383
chr1_1 exon 31531986 31532671 31531986 ID=Msa0018650-mRNA-1:exon:10370;Parent=Msa0018650-mRNA-1
chr1_1 exon 31532919 31533152 31532919 ID=Msa0018650-mRNA-1:exon:10371;Parent=Msa0018650-mRNA-1
chr1_1 exon 31534183 31534308 31534183 ID=Msa0018650-mRNA-1:exon:10372;Parent=Msa0018650-mRNA-1
chr1_1 exon 31534710 31535063 31534710 ID=Msa0018650-mRNA-1:exon:10373;Parent=Msa0018650-mRNA-1
chr1_1 exon 31535096 31535196 31535096 ID=Msa0018650-mRNA-1:exon:10374;Parent=Msa0018650-mRNA-1
chr1_1 five_prime_UTR 31531986 31532053 31531986 ID=Msa0018650-mRNA-1:five_prime_utr;Parent=Msa0018650-mRNA-1
chr1_1 CDS 31532054 31532671 31532054 ID=Msa0018650-mRNA-1:cds;Parent=Msa0018650-mRNA-1
chr1_1 CDS 31532919 31533152 31532919 ID=Msa0018650-mRNA-1:cds;Parent=Msa0018650-mRNA-1
chr1_1 CDS 31534183 31534308 31534183 ID=Msa0018650-mRNA-1:cds;Parent=Msa0018650-mRNA-1
chr1_1 CDS 31534710 31534883 31534710 ID=Msa0018650-mRNA-1:cds;Parent=Msa0018650-mRNA-1
chr1_1 three_prime_UTR 31534884 31535063 31534884 ID=Msa0018650-mRNA-1:three_prime_utr;Parent=Msa0018650-mRNA-1
chr1_1 three_prime_UTR 31535096 31535196 31535096 ID=Msa0018650-mRNA-1:three_prime_utr;Parent=Msa0018650-mRNA-1
Gene Sequence

>Msa0018650

ATGGAGAAAGAGAATGAAAGAGTGATAGTTGTTGGAGCAGGCCCTTCTGGTCTCTCAGTAGCAGCAAGCTTAACAAACCAATCCATTCCTTATATAATCCTCGAAAGAGAAAATTGTTTTGCATCACTATGGAAAAAATATTCATACGATCGTCTTCATCTGCACCTCAAAAAACAATTTTGCGAGCTTCCTCACAAACCATTCCCACCTTCTTTTCCATCATACATTCCTAAAGAAAAGTTTTTACAATACTTAGAAGACTATGTTTCACACTTCAAAATCAATCCTCTGTATCACAGAACAGTTGAGAATGCAAAGTATGATGAAGGTTCTGAGAAATGGAAGGTGAAGGCTAAGAATAAGGATTCTGGTGAGGTTGAGGAATATGAAGGAAGGTTTTTGGTTGTGGCTAGTGGTGAAACTAGTGACCCTTTTGTACCTGAAATTGAAGGGTTGAAGAGTTTTACTGGGAAAGTGATTCATTCAACTGGGTTTAAGAATGGGAGAGAGTTTAAAGATGAACATGTTCTTGTTGTTGGGTCTGGGAATTCTGGCATGGAAATTGCATTGGATCTTATCAACCATGGTGCTAAAACCTCAATCGTTGTTCGAAGCAAGGTTCACATTTTGTCAAGGGGTATGCTGAATTTGGGGTTGTTTCTGATGAAGTATTTGTCAATGGAGATGGTGGATTTAGTGATGGTGATGCTTAGTAAAATGGTTTACGGGGATGTCACGAATTATGGGGTTGGTAGGCCTAGTGAGGGTCCCTTTTATATGAAGGTCAAGTACGGCAAGTATCCTATTATTGACGTTGGAACCTTTCACAAAATTAAGTCTCGAGAGTTAAAGGTTTTGCCAGCTGAAATAGAATGCTTAAGTGGCAAGAATGTCCTCTTCAAAAATGGTCAATTGCACTCTTTTGACTCTATTATTTTCTGCACCGGCTTCAAGAGATCAACCCACAAGTGGCTTAAGGGTGATGATTACCTTTTGAATGATGATGGTATTCCCAAGCCAAGTTACCCTATTCATTGGAAGGGAAAAAATGGTTTATATTGTGTTGGACTATCAAGGAGAGGTTTCTATGGAGCTGCTGCAGATGCAAAAAATATAGCAAATGATGTGAGATCCATCATGAAAAATCTATGA

Protein sequence

>Msa0018650

MEKENERVIVVGAGPSGLSVAASLTNQSIPYIILERENCFASLWKKYSYDRLHLHLKKQFCELPHKPFPPSFPSYIPKEKFLQYLEDYVSHFKINPLYHRTVENAKYDEGSEKWKVKAKNKDSGEVEEYEGRFLVVASGETSDPFVPEIEGLKSFTGKVIHSTGFKNGREFKDEHVLVVGSGNSGMEIALDLINHGAKTSIVVRSKVHILSRGMLNLGLFLMKYLSMEMVDLVMVMLSKMVYGDVTNYGVGRPSEGPFYMKVKYGKYPIIDVGTFHKIKSRELKVLPAEIECLSGKNVLFKNGQLHSFDSIIFCTGFKRSTHKWLKGDDYLLNDDGIPKPSYPIHWKGKNGLYCVGLSRRGFYGAAADAKNIANDVRSIMKNL*