Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149360 | KEH41747.1 | 59.140 | 186 | 33 | 1 | 1 | 143 | 1 | 186 | 1.22e-67 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149360 | A0A072VIV5 | 59.140 | 186 | 33 | 1 | 1 | 143 | 1 | 186 | 5.80e-68 | 214 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013750 | Msa1149360 | 0.810324 | 1.220088e-50 | -8.615850e-47 |
| Msa0092630 | Msa1149360 | 0.821105 | 4.818473e-53 | -8.615850e-47 |
| Msa0095970 | Msa1149360 | 0.803002 | 4.291221e-49 | -8.615850e-47 |
| Msa0102070 | Msa1149360 | 0.848694 | 5.207308e-60 | -8.615850e-47 |
| Msa0120300 | Msa1149360 | 0.800660 | 1.298878e-48 | -8.615850e-47 |
| Msa0604350 | Msa1149360 | 0.806216 | 9.159969e-50 | -8.615850e-47 |
| Msa0636170 | Msa1149360 | 0.804349 | 2.254897e-49 | -8.615850e-47 |
| Msa0639610 | Msa1149360 | 0.804276 | 2.334245e-49 | -8.615850e-47 |
| Msa0647170 | Msa1149360 | 0.800888 | 1.166596e-48 | -8.615850e-47 |
| Msa0678930 | Msa1149360 | 0.818613 | 1.789204e-52 | -8.615850e-47 |
| Msa0701010 | Msa1149360 | 0.814045 | 1.881756e-51 | -8.615850e-47 |
| Msa0725850 | Msa1149360 | 0.804600 | 1.998336e-49 | -8.615850e-47 |
| Msa0726140 | Msa1149360 | 0.826868 | 2.141932e-54 | -8.615850e-47 |
| Msa0729800 | Msa1149360 | 0.828857 | 7.119047e-55 | -8.615850e-47 |
| Msa0731560 | Msa1149360 | 0.816395 | 5.655325e-52 | -8.615850e-47 |
| Msa0732310 | Msa1149360 | 0.815942 | 7.138923e-52 | -8.615850e-47 |
| Msa0733290 | Msa1149360 | 0.825501 | 4.529287e-54 | -8.615850e-47 |
| Msa0743810 | Msa1149360 | 0.853373 | 2.494578e-61 | -8.615850e-47 |
| Msa0745060 | Msa1149360 | 0.845428 | 4.086570e-59 | -8.615850e-47 |
| Msa0766630 | Msa1149360 | 0.814509 | 1.485563e-51 | -8.615850e-47 |
| Msa0767720 | Msa1149360 | 0.814393 | 1.576127e-51 | -8.615850e-47 |
| Msa0768370 | Msa1149360 | 0.818642 | 1.762360e-52 | -8.615850e-47 |
| Msa0777870 | Msa1149360 | 0.803857 | 2.853783e-49 | -8.615850e-47 |
| Msa0783160 | Msa1149360 | 0.865465 | 5.788940e-65 | -8.615850e-47 |
| Msa0784290 | Msa1149360 | 0.804590 | 2.008097e-49 | -8.615850e-47 |
| Msa0787600 | Msa1149360 | 0.838753 | 2.384540e-57 | -8.615850e-47 |
| Msa0808010 | Msa1149360 | 0.811830 | 5.753045e-51 | -8.615850e-47 |
| Msa0808020 | Msa1149360 | 0.805881 | 1.077601e-49 | -8.615850e-47 |
| Msa0824590 | Msa1149360 | 0.803084 | 4.127556e-49 | -8.615850e-47 |
| Msa0824600 | Msa1149360 | 0.816087 | 6.626791e-52 | -8.615850e-47 |
| Msa0825860 | Msa1149360 | 0.851775 | 7.126300e-61 | -8.615850e-47 |
| Msa0833290 | Msa1149360 | 0.832036 | 1.188428e-55 | -8.615850e-47 |
| Msa0833300 | Msa1149360 | 0.818916 | 1.526951e-52 | -8.615850e-47 |
| Msa0123810 | Msa1149360 | 0.811354 | 7.301077e-51 | -8.615850e-47 |
| Msa0145750 | Msa1149360 | 0.820624 | 6.218385e-53 | -8.615850e-47 |
| Msa0153910 | Msa1149360 | 0.849182 | 3.811427e-60 | -8.615850e-47 |
| Msa0200000 | Msa1149360 | 0.811707 | 6.119685e-51 | -8.615850e-47 |
| Msa0227480 | Msa1149360 | 0.837038 | 6.578818e-57 | -8.615850e-47 |
| Msa0231000 | Msa1149360 | 0.823687 | 1.211113e-53 | -8.615850e-47 |
| Msa0232850 | Msa1149360 | 0.803085 | 4.125027e-49 | -8.615850e-47 |
| Msa0365500 | Msa1149360 | 0.802249 | 6.136268e-49 | -8.615850e-47 |
| Msa0384800 | Msa1149360 | 0.809059 | 2.281543e-50 | -8.615850e-47 |
| Msa0402290 | Msa1149360 | 0.804262 | 2.350439e-49 | -8.615850e-47 |
| Msa0406120 | Msa1149360 | 0.830637 | 2.625509e-55 | -8.615850e-47 |
| Msa0407960 | Msa1149360 | 0.801684 | 8.017596e-49 | -8.615850e-47 |
| Msa0414410 | Msa1149360 | 0.848871 | 4.650119e-60 | -8.615850e-47 |
| Msa0414420 | Msa1149360 | 0.874369 | 7.127232e-68 | -8.615850e-47 |
| Msa0430420 | Msa1149360 | 0.809109 | 2.225380e-50 | -8.615850e-47 |
| Msa0435230 | Msa1149360 | 0.806955 | 6.398473e-50 | -8.615850e-47 |
| Msa0436780 | Msa1149360 | 0.853715 | 1.989325e-61 | -8.615850e-47 |
| Msa0436800 | Msa1149360 | 0.801931 | 7.133456e-49 | -8.615850e-47 |
| Msa0438620 | Msa1149360 | 0.816967 | 4.208728e-52 | -8.615850e-47 |
| Msa0450000 | Msa1149360 | 0.862886 | 3.687316e-64 | -8.615850e-47 |
| Msa0450570 | Msa1149360 | 0.830143 | 3.466022e-55 | -8.615850e-47 |
| Msa0451730 | Msa1149360 | 0.813632 | 2.319710e-51 | -8.615850e-47 |
| Msa0452900 | Msa1149360 | 0.879863 | 8.805148e-70 | -8.615850e-47 |
| Msa0453120 | Msa1149360 | 0.863499 | 2.382557e-64 | -8.615850e-47 |
| Msa0454910 | Msa1149360 | 0.803643 | 3.160990e-49 | -8.615850e-47 |
| Msa0459160 | Msa1149360 | 0.818708 | 1.701990e-52 | -8.615850e-47 |
| Msa0459170 | Msa1149360 | 0.816613 | 5.053969e-52 | -8.615850e-47 |
| Msa0981270 | Msa1149360 | 0.822787 | 1.964830e-53 | -8.615850e-47 |
| Msa0981370 | Msa1149360 | 0.847908 | 8.584067e-60 | -8.615850e-47 |
| Msa0986400 | Msa1149360 | 0.823498 | 1.341064e-53 | -8.615850e-47 |
| Msa0989060 | Msa1149360 | 0.805782 | 1.130667e-49 | -8.615850e-47 |
| Msa0991830 | Msa1149360 | 0.822439 | 2.367351e-53 | -8.615850e-47 |
| Msa0998690 | Msa1149360 | 0.824044 | 9.990094e-54 | -8.615850e-47 |
| Msa1000900 | Msa1149360 | 0.811308 | 7.469905e-51 | -8.615850e-47 |
| Msa1014540 | Msa1149360 | 0.822999 | 1.753609e-53 | -8.615850e-47 |
| Msa1016280 | Msa1149360 | 0.865150 | 7.272641e-65 | -8.615850e-47 |
| Msa1024240 | Msa1149360 | 0.829934 | 3.899467e-55 | -8.615850e-47 |
| Msa1025360 | Msa1149360 | 0.872802 | 2.403430e-67 | -8.615850e-47 |
| Msa1025370 | Msa1149360 | 0.861548 | 9.497223e-64 | -8.615850e-47 |
| Msa1028230 | Msa1149360 | 0.811923 | 5.490449e-51 | -8.615850e-47 |
| Msa1044830 | Msa1149360 | 0.864857 | 8.989332e-65 | -8.615850e-47 |
| Msa1044840 | Msa1149360 | 0.873162 | 1.820213e-67 | -8.615850e-47 |
| Msa1060840 | Msa1149360 | 0.926757 | 3.021543e-91 | -8.615850e-47 |
| Msa1092990 | Msa1149360 | 0.828036 | 1.123569e-54 | -8.615850e-47 |
| Msa1100980 | Msa1149360 | 0.872223 | 3.751361e-67 | -8.615850e-47 |
| Msa0247260 | Msa1149360 | 0.803864 | 2.844288e-49 | -8.615850e-47 |
| Msa0251320 | Msa1149360 | 0.800614 | 1.326750e-48 | -8.615850e-47 |
| Msa0267000 | Msa1149360 | 0.857975 | 1.131550e-62 | -8.615850e-47 |
| Msa0267010 | Msa1149360 | 0.864702 | 1.005058e-64 | -8.615850e-47 |
| Msa0270520 | Msa1149360 | 0.800875 | 1.173828e-48 | -8.615850e-47 |
| Msa0285810 | Msa1149360 | 0.821614 | 3.677406e-53 | -8.615850e-47 |
| Msa0313760 | Msa1149360 | 0.808667 | 2.767826e-50 | -8.615850e-47 |
| Msa0337900 | Msa1149360 | 0.811759 | 5.962540e-51 | -8.615850e-47 |
| Msa0342240 | Msa1149360 | 0.851260 | 9.967845e-61 | -8.615850e-47 |
| Msa0360510 | Msa1149360 | 0.841714 | 4.019050e-58 | -8.615850e-47 |
| Msa1109440 | Msa1149360 | 0.890099 | 1.337879e-73 | -8.615850e-47 |
| Msa1121200 | Msa1149360 | 0.853629 | 2.106084e-61 | -8.615850e-47 |
| Msa1135740 | Msa1149360 | 0.851252 | 1.001431e-60 | -8.615850e-47 |
| Msa1136090 | Msa1149360 | 0.823640 | 1.242628e-53 | -8.615850e-47 |
| Msa1146110 | Msa1149360 | 0.838545 | 2.697805e-57 | -8.615850e-47 |
| Msa1149360 | Msa1150370 | 0.840584 | 7.965178e-58 | -8.615850e-47 |
| Msa1149360 | Msa1173920 | 0.823880 | 1.091648e-53 | -8.615850e-47 |
| Msa1149360 | Msa1174910 | 0.805067 | 1.596031e-49 | -8.615850e-47 |
| Msa1149360 | Msa1182090 | 0.812112 | 4.994195e-51 | -8.615850e-47 |
| Msa1149360 | Msa1184420 | 0.858151 | 1.003070e-62 | -8.615850e-47 |
| Msa1149360 | Msa1187940 | 0.819960 | 8.824048e-53 | -8.615850e-47 |
| Msa1149360 | Msa1187950 | 0.828283 | 9.798477e-55 | -8.615850e-47 |
| Msa1149360 | Msa1192640 | 0.860774 | 1.633348e-63 | -8.615850e-47 |
| Msa1149360 | Msa1193730 | 0.804913 | 1.719326e-49 | -8.615850e-47 |
| Msa1149360 | Msa1230430 | 0.849129 | 3.942081e-60 | -8.615850e-47 |
| Msa1149360 | Msa1245990 | 0.803606 | 3.216711e-49 | -8.615850e-47 |
| Msa1149360 | Msa1246880 | 0.803981 | 2.688884e-49 | -8.615850e-47 |
| Msa1149360 | Msa1248370 | 0.802872 | 4.564425e-49 | -8.615850e-47 |
| Msa1149360 | Msa1269670 | 0.844830 | 5.928398e-59 | -8.615850e-47 |
| Msa1149360 | Msa1270230 | 0.852247 | 5.231070e-61 | -8.615850e-47 |
| Msa1149360 | Msa1270240 | 0.843842 | 1.092272e-58 | -8.615850e-47 |
| Msa1149360 | Msa1270270 | 0.834310 | 3.227951e-56 | -8.615850e-47 |
| Msa1149360 | Msa1273230 | 0.805426 | 1.342736e-49 | -8.615850e-47 |
| Msa1149360 | Msa1283330 | 0.853681 | 2.034598e-61 | -8.615850e-47 |
| Msa1149360 | Msa1284680 | 0.821110 | 4.805586e-53 | -8.615850e-47 |
| Msa1149360 | Msa1285930 | 0.870146 | 1.819471e-66 | -8.615850e-47 |
| Msa1149360 | Msa1287800 | 0.859733 | 3.371773e-63 | -8.615850e-47 |
| Msa1149360 | Msa1287810 | 0.874049 | 9.150540e-68 | -8.615850e-47 |
| Msa1149360 | Msa1288560 | 0.824642 | 7.225601e-54 | -8.615850e-47 |
| Msa1149360 | Msa1289420 | 0.805515 | 1.286084e-49 | -8.615850e-47 |
| Msa1149360 | Msa1289430 | 0.804124 | 2.511623e-49 | -8.615850e-47 |
| Msa1149360 | Msa1297210 | 0.803011 | 4.271851e-49 | -8.615850e-47 |
| Msa1149360 | Msa1305480 | 0.800305 | 1.533761e-48 | -8.615850e-47 |
| Msa1149360 | Msa1307890 | 0.850951 | 1.217759e-60 | -8.615850e-47 |
| Msa1149360 | Msa1310120 | 0.816250 | 6.091810e-52 | -8.615850e-47 |
| Msa1149360 | Msa1320300 | 0.825080 | 5.696535e-54 | -8.615850e-47 |
| Msa1149360 | Msa1340590 | 0.811163 | 8.030776e-51 | -8.615850e-47 |
| Msa1149360 | Msa1366810 | 0.823232 | 1.547836e-53 | -8.615850e-47 |
| Msa1149360 | Msa1369430 | 0.811567 | 6.562640e-51 | -8.615850e-47 |
| Msa1149360 | Msa1397150 | 0.820062 | 8.365540e-53 | -8.615850e-47 |
| Msa1149360 | Msa1397580 | 0.808585 | 2.881904e-50 | -8.615850e-47 |
| Msa1149360 | Msa1402790 | 0.833252 | 5.932996e-56 | -8.615850e-47 |
| Msa1149360 | Msa1404000 | 0.827616 | 1.417838e-54 | -8.615850e-47 |
| Msa1149360 | Msa1404020 | 0.801116 | 1.047986e-48 | -8.615850e-47 |
| Msa1149360 | Msa1408780 | 0.820833 | 5.565214e-53 | -8.615850e-47 |
| Msa1149360 | Msa1415310 | 0.839834 | 1.250117e-57 | -8.615850e-47 |
| Msa1149360 | Msa1422180 | 0.819090 | 1.393591e-52 | -8.615850e-47 |
| Msa1149360 | Msa1433120 | 0.842870 | 1.985319e-58 | -8.615850e-47 |
| Msa1149360 | Msa1451570 | 0.803171 | 3.960002e-49 | -8.615850e-47 |
| Msa0491590 | Msa1149360 | 0.835844 | 1.324536e-56 | -8.615850e-47 |
| Msa0506270 | Msa1149360 | 0.818105 | 2.331697e-52 | -8.615850e-47 |
| Msa0534540 | Msa1149360 | 0.842757 | 2.128199e-58 | -8.615850e-47 |
| Msa0564890 | Msa1149360 | 0.879235 | 1.470380e-69 | -8.615850e-47 |
| Msa0596150 | Msa1149360 | 0.804265 | 2.346647e-49 | -8.615850e-47 |
| Msa0598780 | Msa1149360 | 0.817849 | 2.664469e-52 | -8.615850e-47 |
| Msa0844490 | Msa1149360 | 0.824587 | 7.444959e-54 | -8.615850e-47 |
| Msa0846330 | Msa1149360 | 0.829093 | 6.243018e-55 | -8.615850e-47 |
| Msa0846350 | Msa1149360 | 0.821050 | 4.961365e-53 | -8.615850e-47 |
| Msa0857680 | Msa1149360 | 0.802692 | 4.971776e-49 | -8.615850e-47 |
| Msa0858980 | Msa1149360 | 0.818502 | 1.895361e-52 | -8.615850e-47 |
| Msa0865320 | Msa1149360 | 0.830738 | 2.479413e-55 | -8.615850e-47 |
| Msa0872230 | Msa1149360 | 0.839534 | 1.496123e-57 | -8.615850e-47 |
| Msa0877250 | Msa1149360 | 0.824506 | 7.779514e-54 | -8.615850e-47 |
| Msa0884150 | Msa1149360 | 0.804291 | 2.318215e-49 | -8.615850e-47 |
| Msa0885280 | Msa1149360 | 0.804536 | 2.060718e-49 | -8.615850e-47 |
| Msa0885290 | Msa1149360 | 0.834045 | 3.761689e-56 | -8.615850e-47 |
| Msa0888370 | Msa1149360 | 0.825886 | 3.669892e-54 | -8.615850e-47 |
| Msa0888420 | Msa1149360 | 0.847497 | 1.114000e-59 | -8.615850e-47 |
| Msa0896080 | Msa1149360 | 0.808468 | 3.051473e-50 | -8.615850e-47 |
| Msa0899430 | Msa1149360 | 0.826052 | 3.352517e-54 | -8.615850e-47 |
| Msa0899450 | Msa1149360 | 0.808978 | 2.374581e-50 | -8.615850e-47 |
| Msa0907260 | Msa1149360 | 0.852467 | 4.530416e-61 | -8.615850e-47 |
| Msa0914760 | Msa1149360 | 0.836165 | 1.098201e-56 | -8.615850e-47 |
| Msa0952720 | Msa1149360 | 0.856566 | 2.950316e-62 | -8.615850e-47 |
| Msa0953120 | Msa1149360 | 0.821255 | 4.449368e-53 | -8.615850e-47 |
| Msa0956270 | Msa1149360 | 0.857238 | 1.869631e-62 | -8.615850e-47 |
| Msa0958550 | Msa1149360 | 0.828149 | 1.055376e-54 | -8.615850e-47 |
| Msa0966750 | Msa1149360 | 0.804151 | 2.478430e-49 | -8.615850e-47 |
| Msa0974870 | Msa1149360 | 0.815640 | 8.335463e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149360 | MtrunA17_Chr1g0172351 | 76.812 | 69 | 16 | 0 | 99 | 167 | 77 | 145 | 4.47e-35 | 120 |
| Msa1149360 | MtrunA17_Chr4g0044671 | 25.000 | 208 | 113 | 1 | 1 | 165 | 1 | 208 | 7.86e-21 | 85.1 |
| Msa1149360 | MtrunA17_Chr1g0175581 | 50.000 | 78 | 39 | 0 | 88 | 165 | 29 | 106 | 4.66e-20 | 80.1 |
| Msa1149360 | MtrunA17_Chr4g0034781 | 25.000 | 204 | 110 | 1 | 7 | 167 | 1 | 204 | 6.77e-19 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 28 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGGTTGGACTGAGTTTA+AGG | 0.185372 | 7_4:+30618727 | Msa1149360:CDS |
| GGAAAACTTACAACACAATT+TGG | 0.198179 | 7_4:+30619137 | Msa1149360:CDS |
| CAGCAAGTTGATGACGAATT+TGG | 0.199887 | 7_4:+30619023 | Msa1149360:intron |
| TGGCAATGAAGAGAAATTTA+AGG | 0.284538 | 7_4:+30619097 | Msa1149360:CDS |
| GGAATGTATCTCAAGCAATA+TGG | 0.328623 | 7_4:+30619044 | Msa1149360:CDS |
| ATAAAACTTTGTGCTGATAA+TGG | 0.338821 | 7_4:+30619077 | Msa1149360:CDS |
| TAGCTAATCTATCACGTTCA+TGG | 0.343597 | 7_4:+30618633 | Msa1149360:CDS |
| TCAATTTGAAGCGTATTGTT+TGG | 0.372308 | 7_4:-30619205 | None:intergenic |
| AAGGTGTATTTACTTAATGA+TGG | 0.416212 | 7_4:+30619116 | Msa1149360:CDS |
| TCTCAAGCAATATGGTTTCC+AGG | 0.423438 | 7_4:+30619052 | Msa1149360:CDS |
| TTGGCCAACTCTGAAGTTGT+TGG | 0.427754 | 7_4:-30619186 | None:intergenic |
| AAAACAATTTCAACATTGTC+AGG | 0.431374 | 7_4:-30618764 | None:intergenic |
| AGTTGTCAAAGTTGCAGAGC+AGG | 0.438195 | 7_4:+30618461 | Msa1149360:CDS |
| AAATTTGTCTTCACAAAAGC+TGG | 0.439036 | 7_4:-30618611 | None:intergenic |
| CTACGGTAATAATATGTTCT+CGG | 0.473564 | 7_4:+30618793 | Msa1149360:CDS |
| TTTAACTTTCAACAAAAGCT+TGG | 0.486750 | 7_4:+30618688 | Msa1149360:CDS |
| CAACACAATTTGGAATCCTG+TGG | 0.534831 | 7_4:+30619147 | Msa1149360:CDS |
| ACCCCATGTTAACACATGGT+TGG | 0.537028 | 7_4:+30618714 | Msa1149360:CDS |
| AGTCCAACCATGTGTTAACA+TGG | 0.542552 | 7_4:-30618717 | None:intergenic |
| AACACAATTTGGAATCCTGT+GGG | 0.587367 | 7_4:+30619148 | Msa1149360:CDS |
| GTCCAACCATGTGTTAACAT+GGG | 0.594446 | 7_4:-30618716 | None:intergenic |
| TCTTGCAGAAATGATCCCAC+AGG | 0.594556 | 7_4:-30619163 | None:intergenic |
| AAGACCAACAACTTCAGAGT+TGG | 0.597015 | 7_4:+30619182 | Msa1149360:CDS |
| GTTAACCCCATGTTAACACA+TGG | 0.616537 | 7_4:+30618710 | Msa1149360:CDS |
| CAACTGAGACATATTCAAGC+GGG | 0.630494 | 7_4:-30618443 | None:intergenic |
| TCCAACCATGTGTTAACATG+GGG | 0.650672 | 7_4:-30618715 | None:intergenic |
| ACAACTGAGACATATTCAAG+CGG | 0.674713 | 7_4:-30618444 | None:intergenic |
| CTTCTCAATACAGAAAACAC+AGG | 0.686274 | 7_4:+30618659 | Msa1149360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGGAAAATAAAACATT+GGG | - | chr7_4:30618937-30618956 | None:intergenic | 15.0% |
| !! | AAAAAAGGAAAATAAAACAT+TGG | - | chr7_4:30618938-30618957 | None:intergenic | 15.0% |
| !!! | ATTTTAAAAGAAGTGAAAAA+AGG | - | chr7_4:30618953-30618972 | None:intergenic | 15.0% |
| !! | AAAAAGGAAAATAAAACATT+GGG | - | chr7_4:30618937-30618956 | None:intergenic | 15.0% |
| !! | AAAAAAGGAAAATAAAACAT+TGG | - | chr7_4:30618938-30618957 | None:intergenic | 15.0% |
| !!! | ATTTTAAAAGAAGTGAAAAA+AGG | - | chr7_4:30618953-30618972 | None:intergenic | 15.0% |
| !! | TTTAACTTTCAACAAAAGCT+TGG | + | chr7_4:30618688-30618707 | Msa1149360:CDS | 25.0% |
| ! | AAAACAATTTCAACATTGTC+AGG | - | chr7_4:30618767-30618786 | None:intergenic | 25.0% |
| !! | GACAATGTTGAAATTGTTTT+TGG | + | chr7_4:30618767-30618786 | Msa1149360:CDS | 25.0% |
| !!! | GAAATTGTTTTTGGTTACTA+CGG | + | chr7_4:30618776-30618795 | Msa1149360:CDS | 25.0% |
| ! | AATGTTAAATGAAGAAGGAA+TGG | - | chr7_4:30618980-30618999 | None:intergenic | 25.0% |
| ! | GGATAAATGTTAAATGAAGA+AGG | - | chr7_4:30618985-30619004 | None:intergenic | 25.0% |
| ! | TCATTTAACATTTATCCGAT+TGG | + | chr7_4:30618988-30619007 | Msa1149360:intron | 25.0% |
| ! | CTGTATAAAACAATACCAAT+CGG | - | chr7_4:30619006-30619025 | None:intergenic | 25.0% |
| !! | ATAAAACTTTGTGCTGATAA+TGG | + | chr7_4:30619077-30619096 | Msa1149360:CDS | 25.0% |
| ! | AAGGTGTATTTACTTAATGA+TGG | + | chr7_4:30619116-30619135 | Msa1149360:CDS | 25.0% |
| !! | TTTAACTTTCAACAAAAGCT+TGG | + | chr7_4:30618688-30618707 | Msa1149360:CDS | 25.0% |
| ! | AAAACAATTTCAACATTGTC+AGG | - | chr7_4:30618767-30618786 | None:intergenic | 25.0% |
| !! | GACAATGTTGAAATTGTTTT+TGG | + | chr7_4:30618767-30618786 | Msa1149360:CDS | 25.0% |
| !!! | GAAATTGTTTTTGGTTACTA+CGG | + | chr7_4:30618776-30618795 | Msa1149360:CDS | 25.0% |
| ! | AATGTTAAATGAAGAAGGAA+TGG | - | chr7_4:30618980-30618999 | None:intergenic | 25.0% |
| ! | GGATAAATGTTAAATGAAGA+AGG | - | chr7_4:30618985-30619004 | None:intergenic | 25.0% |
| ! | TCATTTAACATTTATCCGAT+TGG | + | chr7_4:30618988-30619007 | Msa1149360:intron | 25.0% |
| ! | CTGTATAAAACAATACCAAT+CGG | - | chr7_4:30619006-30619025 | None:intergenic | 25.0% |
| !! | ATAAAACTTTGTGCTGATAA+TGG | + | chr7_4:30619077-30619096 | Msa1149360:CDS | 25.0% |
| ! | AAGGTGTATTTACTTAATGA+TGG | + | chr7_4:30619116-30619135 | Msa1149360:CDS | 25.0% |
| AAATTTGTCTTCACAAAAGC+TGG | - | chr7_4:30618614-30618633 | None:intergenic | 30.0% | |
| CTACGGTAATAATATGTTCT+CGG | + | chr7_4:30618793-30618812 | Msa1149360:CDS | 30.0% | |
| TGGCAATGAAGAGAAATTTA+AGG | + | chr7_4:30619097-30619116 | Msa1149360:CDS | 30.0% | |
| GGAAAACTTACAACACAATT+TGG | + | chr7_4:30619137-30619156 | Msa1149360:CDS | 30.0% | |
| ! | TCAATTTGAAGCGTATTGTT+TGG | - | chr7_4:30619208-30619227 | None:intergenic | 30.0% |
| AAATTTGTCTTCACAAAAGC+TGG | - | chr7_4:30618614-30618633 | None:intergenic | 30.0% | |
| CTACGGTAATAATATGTTCT+CGG | + | chr7_4:30618793-30618812 | Msa1149360:CDS | 30.0% | |
| TGGCAATGAAGAGAAATTTA+AGG | + | chr7_4:30619097-30619116 | Msa1149360:CDS | 30.0% | |
| GGAAAACTTACAACACAATT+TGG | + | chr7_4:30619137-30619156 | Msa1149360:CDS | 30.0% | |
| ! | TCAATTTGAAGCGTATTGTT+TGG | - | chr7_4:30619208-30619227 | None:intergenic | 30.0% |
| ACAACTGAGACATATTCAAG+CGG | - | chr7_4:30618447-30618466 | None:intergenic | 35.0% | |
| TAGCTAATCTATCACGTTCA+TGG | + | chr7_4:30618633-30618652 | Msa1149360:CDS | 35.0% | |
| CTTCTCAATACAGAAAACAC+AGG | + | chr7_4:30618659-30618678 | Msa1149360:CDS | 35.0% | |
| ATCAAAATACGCAGTGTGAT+TGG | - | chr7_4:30618885-30618904 | None:intergenic | 35.0% | |
| !! | TTTTGATTCTCTCCTTACTG+AGG | + | chr7_4:30618898-30618917 | Msa1149360:intron | 35.0% |
| GGAATGTATCTCAAGCAATA+TGG | + | chr7_4:30619044-30619063 | Msa1149360:CDS | 35.0% | |
| !! | CAGCACAAAGTTTTATATCC+TGG | - | chr7_4:30619073-30619092 | None:intergenic | 35.0% |
| ! | AACACAATTTGGAATCCTGT+GGG | + | chr7_4:30619148-30619167 | Msa1149360:CDS | 35.0% |
| ACAACTGAGACATATTCAAG+CGG | - | chr7_4:30618447-30618466 | None:intergenic | 35.0% | |
| TAGCTAATCTATCACGTTCA+TGG | + | chr7_4:30618633-30618652 | Msa1149360:CDS | 35.0% | |
| CTTCTCAATACAGAAAACAC+AGG | + | chr7_4:30618659-30618678 | Msa1149360:CDS | 35.0% | |
| ATCAAAATACGCAGTGTGAT+TGG | - | chr7_4:30618885-30618904 | None:intergenic | 35.0% | |
| !! | TTTTGATTCTCTCCTTACTG+AGG | + | chr7_4:30618898-30618917 | Msa1149360:intron | 35.0% |
| GGAATGTATCTCAAGCAATA+TGG | + | chr7_4:30619044-30619063 | Msa1149360:CDS | 35.0% | |
| !! | CAGCACAAAGTTTTATATCC+TGG | - | chr7_4:30619073-30619092 | None:intergenic | 35.0% |
| ! | AACACAATTTGGAATCCTGT+GGG | + | chr7_4:30619148-30619167 | Msa1149360:CDS | 35.0% |
| CAACTGAGACATATTCAAGC+GGG | - | chr7_4:30618446-30618465 | None:intergenic | 40.0% | |
| GTTAACCCCATGTTAACACA+TGG | + | chr7_4:30618710-30618729 | Msa1149360:CDS | 40.0% | |
| TCCAACCATGTGTTAACATG+GGG | - | chr7_4:30618718-30618737 | None:intergenic | 40.0% | |
| GTCCAACCATGTGTTAACAT+GGG | - | chr7_4:30618719-30618738 | None:intergenic | 40.0% | |
| AGTCCAACCATGTGTTAACA+TGG | - | chr7_4:30618720-30618739 | None:intergenic | 40.0% | |
| ACATGGTTGGACTGAGTTTA+AGG | + | chr7_4:30618727-30618746 | Msa1149360:CDS | 40.0% | |
| CACCTCATGACTTACATACA+TGG | + | chr7_4:30618840-30618859 | Msa1149360:intron | 40.0% | |
| TGCCATGTATGTAAGTCATG+AGG | - | chr7_4:30618845-30618864 | None:intergenic | 40.0% | |
| TGAGAAAGTCATCCTCAGTA+AGG | - | chr7_4:30618913-30618932 | None:intergenic | 40.0% | |
| !! | CAGCAAGTTGATGACGAATT+TGG | + | chr7_4:30619023-30619042 | Msa1149360:intron | 40.0% |
| TCTCAAGCAATATGGTTTCC+AGG | + | chr7_4:30619052-30619071 | Msa1149360:CDS | 40.0% | |
| ! | CAACACAATTTGGAATCCTG+TGG | + | chr7_4:30619147-30619166 | Msa1149360:CDS | 40.0% |
| AAGACCAACAACTTCAGAGT+TGG | + | chr7_4:30619182-30619201 | Msa1149360:CDS | 40.0% | |
| CAACTGAGACATATTCAAGC+GGG | - | chr7_4:30618446-30618465 | None:intergenic | 40.0% | |
| GTTAACCCCATGTTAACACA+TGG | + | chr7_4:30618710-30618729 | Msa1149360:CDS | 40.0% | |
| TCCAACCATGTGTTAACATG+GGG | - | chr7_4:30618718-30618737 | None:intergenic | 40.0% | |
| GTCCAACCATGTGTTAACAT+GGG | - | chr7_4:30618719-30618738 | None:intergenic | 40.0% | |
| AGTCCAACCATGTGTTAACA+TGG | - | chr7_4:30618720-30618739 | None:intergenic | 40.0% | |
| ACATGGTTGGACTGAGTTTA+AGG | + | chr7_4:30618727-30618746 | Msa1149360:CDS | 40.0% | |
| CACCTCATGACTTACATACA+TGG | + | chr7_4:30618840-30618859 | Msa1149360:intron | 40.0% | |
| TGCCATGTATGTAAGTCATG+AGG | - | chr7_4:30618845-30618864 | None:intergenic | 40.0% | |
| TGAGAAAGTCATCCTCAGTA+AGG | - | chr7_4:30618913-30618932 | None:intergenic | 40.0% | |
| !! | CAGCAAGTTGATGACGAATT+TGG | + | chr7_4:30619023-30619042 | Msa1149360:intron | 40.0% |
| TCTCAAGCAATATGGTTTCC+AGG | + | chr7_4:30619052-30619071 | Msa1149360:CDS | 40.0% | |
| ! | CAACACAATTTGGAATCCTG+TGG | + | chr7_4:30619147-30619166 | Msa1149360:CDS | 40.0% |
| AAGACCAACAACTTCAGAGT+TGG | + | chr7_4:30619182-30619201 | Msa1149360:CDS | 40.0% | |
| AGTTGTCAAAGTTGCAGAGC+AGG | + | chr7_4:30618461-30618480 | Msa1149360:CDS | 45.0% | |
| ACCCCATGTTAACACATGGT+TGG | + | chr7_4:30618714-30618733 | Msa1149360:CDS | 45.0% | |
| TCTTGCAGAAATGATCCCAC+AGG | - | chr7_4:30619166-30619185 | None:intergenic | 45.0% | |
| !! | TTGGCCAACTCTGAAGTTGT+TGG | - | chr7_4:30619189-30619208 | None:intergenic | 45.0% |
| AGTTGTCAAAGTTGCAGAGC+AGG | + | chr7_4:30618461-30618480 | Msa1149360:CDS | 45.0% | |
| ACCCCATGTTAACACATGGT+TGG | + | chr7_4:30618714-30618733 | Msa1149360:CDS | 45.0% | |
| TCTTGCAGAAATGATCCCAC+AGG | - | chr7_4:30619166-30619185 | None:intergenic | 45.0% | |
| !! | TTGGCCAACTCTGAAGTTGT+TGG | - | chr7_4:30619189-30619208 | None:intergenic | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 30618411 | 30619235 | 30618411 | ID=Msa1149360;Name=Msa1149360 |
| chr7_4 | mRNA | 30618411 | 30619235 | 30618411 | ID=Msa1149360-mRNA-1;Parent=Msa1149360;Name=Msa1149360-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|3|0|167 |
| chr7_4 | exon | 30618411 | 30618482 | 30618411 | ID=Msa1149360-mRNA-1:exon:7462;Parent=Msa1149360-mRNA-1 |
| chr7_4 | exon | 30618593 | 30618814 | 30618593 | ID=Msa1149360-mRNA-1:exon:7463;Parent=Msa1149360-mRNA-1 |
| chr7_4 | exon | 30619026 | 30619235 | 30619026 | ID=Msa1149360-mRNA-1:exon:7464;Parent=Msa1149360-mRNA-1 |
| chr7_4 | CDS | 30618411 | 30618482 | 30618411 | ID=Msa1149360-mRNA-1:cds;Parent=Msa1149360-mRNA-1 |
| chr7_4 | CDS | 30618593 | 30618814 | 30618593 | ID=Msa1149360-mRNA-1:cds;Parent=Msa1149360-mRNA-1 |
| chr7_4 | CDS | 30619026 | 30619235 | 30619026 | ID=Msa1149360-mRNA-1:cds;Parent=Msa1149360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
