Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067140 | XP_013450334.1 | 95.745 | 329 | 13 | 1 | 1 | 329 | 56 | 383 | 0.0 | 653 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067140 | sp|Q9FVQ0|YUC10_ARATH | 45.897 | 329 | 177 | 1 | 1 | 329 | 53 | 380 | 1.74e-112 | 334 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067140 | A0A072U3V7 | 95.745 | 329 | 13 | 1 | 1 | 329 | 56 | 383 | 0.0 | 653 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0067140 | 0.801919 | 7.173224e-49 | -8.615850e-47 |
| Msa0018650 | Msa0067140 | 0.927987 | 5.451714e-92 | -8.615850e-47 |
| Msa0067140 | Msa0112590 | 0.921039 | 5.960794e-88 | -8.615850e-47 |
| Msa0067140 | Msa0131770 | 0.807683 | 4.484409e-50 | -8.615850e-47 |
| Msa0067140 | Msa0142220 | 0.806820 | 6.830472e-50 | -8.615850e-47 |
| Msa0067140 | Msa0158480 | 0.885346 | 8.801283e-72 | -8.615850e-47 |
| Msa0067140 | Msa0212990 | 0.801955 | 7.053022e-49 | -8.615850e-47 |
| Msa0067140 | Msa0329190 | 0.817463 | 3.255283e-52 | -8.615850e-47 |
| Msa0067140 | Msa0355220 | 0.803095 | 4.105888e-49 | -8.615850e-47 |
| Msa0067140 | Msa0395790 | 0.803598 | 3.229888e-49 | -8.615850e-47 |
| Msa0067140 | Msa0402290 | 0.813571 | 2.392883e-51 | -8.615850e-47 |
| Msa0067140 | Msa0409690 | 0.800174 | 1.630816e-48 | -8.615850e-47 |
| Msa0067140 | Msa0414230 | 0.806129 | 9.555058e-50 | -8.615850e-47 |
| Msa0067140 | Msa0523940 | 0.801265 | 9.769126e-49 | -8.615850e-47 |
| Msa0067140 | Msa0532350 | 0.808644 | 2.798662e-50 | -8.615850e-47 |
| Msa0067140 | Msa0592680 | 0.812985 | 3.218477e-51 | -8.615850e-47 |
| Msa0067140 | Msa0647170 | 0.805147 | 1.535965e-49 | -8.615850e-47 |
| Msa0067140 | Msa0650630 | 0.818402 | 1.997268e-52 | -8.615850e-47 |
| Msa0067140 | Msa0661650 | 0.809940 | 1.476160e-50 | -8.615850e-47 |
| Msa0067140 | Msa0694370 | 0.800456 | 1.428968e-48 | -8.615850e-47 |
| Msa0067140 | Msa0731940 | 0.817203 | 3.725474e-52 | -8.615850e-47 |
| Msa0067140 | Msa0735170 | 0.819500 | 1.124349e-52 | -8.615850e-47 |
| Msa0067140 | Msa0753720 | 0.801699 | 7.959366e-49 | -8.615850e-47 |
| Msa0067140 | Msa0760130 | 0.812423 | 4.271197e-51 | -8.615850e-47 |
| Msa0067140 | Msa0766630 | 0.808323 | 3.276335e-50 | -8.615850e-47 |
| Msa0067140 | Msa0768310 | 0.801080 | 1.065815e-48 | -8.615850e-47 |
| Msa0067140 | Msa0822650 | 0.800341 | 1.508006e-48 | -8.615850e-47 |
| Msa0067140 | Msa0885290 | 0.810916 | 9.083289e-51 | -8.615850e-47 |
| Msa0067140 | Msa0909140 | 0.803259 | 3.796663e-49 | -8.615850e-47 |
| Msa0067140 | Msa0933100 | 0.800148 | 1.650745e-48 | -8.615850e-47 |
| Msa0067140 | Msa0956270 | 0.810444 | 1.149307e-50 | -8.615850e-47 |
| Msa0067140 | Msa0969450 | 0.817011 | 4.113495e-52 | -8.615850e-47 |
| Msa0067140 | Msa0969520 | 0.819398 | 1.185960e-52 | -8.615850e-47 |
| Msa0067140 | Msa0975220 | 0.802292 | 6.011355e-49 | -8.615850e-47 |
| Msa0067140 | Msa1014540 | 0.842533 | 2.440780e-58 | -8.615850e-47 |
| Msa0067140 | Msa1019150 | 0.808645 | 2.797071e-50 | -8.615850e-47 |
| Msa0067140 | Msa1075650 | 0.815845 | 7.504144e-52 | -8.615850e-47 |
| Msa0067140 | Msa1082500 | 0.804102 | 2.538175e-49 | -8.615850e-47 |
| Msa0067140 | Msa1112300 | 0.803915 | 2.775313e-49 | -8.615850e-47 |
| Msa0067140 | Msa1121490 | 0.813676 | 2.268952e-51 | -8.615850e-47 |
| Msa0067140 | Msa1137570 | 0.809835 | 1.554528e-50 | -8.615850e-47 |
| Msa0067140 | Msa1147740 | 0.819487 | 1.132040e-52 | -8.615850e-47 |
| Msa0067140 | Msa1162550 | -0.800971 | 1.121859e-48 | -8.615850e-47 |
| Msa0067140 | Msa1228590 | 0.802203 | 6.271878e-49 | -8.615850e-47 |
| Msa0067140 | Msa1353470 | 0.815215 | 1.036142e-51 | -8.615850e-47 |
| Msa0067140 | Msa1397860 | 0.805228 | 1.477287e-49 | -8.615850e-47 |
| Msa0067140 | Msa1466540 | 0.813358 | 2.665837e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067140 | MtrunA17_Chr7g0268611 | 95.745 | 329 | 13 | 1 | 1 | 329 | 56 | 383 | 0.0 | 653 |
| Msa0067140 | MtrunA17_Chr7g0268621 | 66.361 | 327 | 107 | 3 | 1 | 326 | 54 | 378 | 1.12e-159 | 451 |
| Msa0067140 | MtrunA17_Chr8g0350371 | 46.605 | 324 | 172 | 1 | 1 | 324 | 54 | 376 | 1.23e-109 | 324 |
| Msa0067140 | MtrunA17_Chr5g0412881 | 48.137 | 322 | 166 | 1 | 1 | 322 | 54 | 374 | 4.89e-109 | 322 |
| Msa0067140 | MtrunA17_Chr3g0125701 | 48.447 | 322 | 165 | 1 | 1 | 322 | 55 | 375 | 5.09e-108 | 320 |
| Msa0067140 | MtrunA17_Chr3g0125711 | 47.516 | 322 | 168 | 1 | 1 | 322 | 55 | 375 | 6.17e-106 | 315 |
| Msa0067140 | MtrunA17_Chr3g0125691 | 47.826 | 322 | 167 | 1 | 1 | 322 | 55 | 375 | 1.03e-105 | 315 |
| Msa0067140 | MtrunA17_Chr3g0139441 | 43.243 | 333 | 182 | 3 | 1 | 328 | 87 | 417 | 4.37e-95 | 288 |
| Msa0067140 | MtrunA17_Chr6g0485621 | 41.840 | 337 | 186 | 5 | 1 | 329 | 80 | 414 | 1.01e-93 | 285 |
| Msa0067140 | MtrunA17_Chr1g0147221 | 43.373 | 332 | 180 | 4 | 1 | 327 | 90 | 418 | 8.62e-93 | 283 |
| Msa0067140 | MtrunA17_Chr1g0182991 | 42.216 | 334 | 182 | 6 | 1 | 328 | 73 | 401 | 3.15e-91 | 278 |
| Msa0067140 | MtrunA17_Chr7g0262591 | 41.141 | 333 | 183 | 5 | 1 | 328 | 72 | 396 | 1.02e-88 | 271 |
| Msa0067140 | MtrunA17_Chr1g0148801 | 40.719 | 334 | 186 | 5 | 1 | 329 | 64 | 390 | 3.85e-88 | 270 |
| Msa0067140 | MtrunA17_Chr1g0169111 | 42.249 | 329 | 180 | 5 | 1 | 322 | 150 | 475 | 1.78e-86 | 268 |
| Msa0067140 | MtrunA17_Chr7g0262471 | 40.064 | 312 | 174 | 5 | 22 | 328 | 214 | 517 | 2.09e-77 | 246 |
| Msa0067140 | MtrunA17_Chr4g0025641 | 50.000 | 150 | 75 | 0 | 3 | 152 | 66 | 215 | 8.24e-48 | 160 |
| Msa0067140 | MtrunA17_Chr4g0025651 | 45.614 | 171 | 91 | 2 | 152 | 322 | 1 | 169 | 1.52e-45 | 153 |
| Msa0067140 | MtrunA17_Chr3g0129991 | 46.154 | 117 | 63 | 0 | 13 | 129 | 3 | 119 | 1.05e-33 | 120 |
| Msa0067140 | MtrunA17_Chr8g0352461 | 28.000 | 150 | 102 | 3 | 14 | 162 | 92 | 236 | 1.34e-12 | 68.2 |
| Msa0067140 | MtrunA17_Chr8g0352481 | 29.452 | 146 | 96 | 3 | 14 | 159 | 92 | 230 | 2.88e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067140 | AT1G48910.1 | 45.897 | 329 | 177 | 1 | 1 | 329 | 53 | 380 | 1.77e-113 | 334 |
| Msa0067140 | AT1G21430.1 | 44.207 | 328 | 177 | 5 | 1 | 326 | 57 | 380 | 1.33e-98 | 296 |
| Msa0067140 | AT1G04610.1 | 43.582 | 335 | 178 | 6 | 1 | 327 | 85 | 416 | 1.16e-93 | 285 |
| Msa0067140 | AT4G13260.1 | 42.508 | 327 | 181 | 3 | 1 | 322 | 76 | 400 | 6.22e-93 | 283 |
| Msa0067140 | AT5G25620.1 | 43.284 | 335 | 179 | 5 | 1 | 328 | 80 | 410 | 3.14e-91 | 278 |
| Msa0067140 | AT5G25620.2 | 43.284 | 335 | 179 | 5 | 1 | 328 | 80 | 410 | 3.55e-91 | 279 |
| Msa0067140 | AT5G43890.1 | 41.916 | 334 | 184 | 6 | 1 | 327 | 73 | 403 | 7.82e-90 | 275 |
| Msa0067140 | AT4G32540.1 | 42.073 | 328 | 176 | 6 | 1 | 322 | 69 | 388 | 2.77e-89 | 273 |
| Msa0067140 | AT4G32540.2 | 42.553 | 329 | 175 | 6 | 1 | 322 | 69 | 390 | 3.45e-89 | 273 |
| Msa0067140 | AT1G04180.1 | 42.042 | 333 | 182 | 6 | 1 | 327 | 73 | 400 | 2.71e-88 | 271 |
| Msa0067140 | AT4G28720.1 | 40.896 | 335 | 187 | 7 | 1 | 327 | 73 | 404 | 8.65e-88 | 270 |
| Msa0067140 | AT5G11320.1 | 41.284 | 327 | 178 | 5 | 1 | 322 | 65 | 382 | 2.55e-83 | 258 |
| Msa0067140 | AT2G33230.1 | 41.194 | 335 | 185 | 6 | 1 | 327 | 80 | 410 | 1.73e-80 | 251 |
| Msa0067140 | AT4G13260.3 | 40.878 | 296 | 167 | 4 | 32 | 322 | 5 | 297 | 1.69e-76 | 237 |
| Msa0067140 | AT4G13260.2 | 43.644 | 236 | 127 | 2 | 1 | 231 | 76 | 310 | 1.67e-67 | 214 |
| Msa0067140 | AT5G11320.2 | 40.794 | 277 | 151 | 4 | 1 | 272 | 65 | 333 | 2.97e-67 | 215 |
| Msa0067140 | AT1G12140.1 | 31.655 | 139 | 86 | 2 | 20 | 158 | 108 | 237 | 4.30e-13 | 70.1 |
| Msa0067140 | AT1G12140.3 | 31.655 | 139 | 86 | 2 | 20 | 158 | 108 | 237 | 4.30e-13 | 70.1 |
| Msa0067140 | AT1G12200.2 | 32.143 | 140 | 79 | 4 | 25 | 158 | 113 | 242 | 7.17e-12 | 66.2 |
| Msa0067140 | AT1G12200.1 | 32.143 | 140 | 79 | 4 | 25 | 158 | 113 | 242 | 8.19e-12 | 66.2 |
| Msa0067140 | AT1G65860.1 | 32.394 | 142 | 84 | 3 | 17 | 158 | 107 | 236 | 1.32e-11 | 65.5 |
| Msa0067140 | AT1G62540.1 | 32.168 | 143 | 83 | 4 | 17 | 158 | 107 | 236 | 3.36e-11 | 64.3 |
| Msa0067140 | AT1G12160.1 | 32.215 | 149 | 82 | 6 | 14 | 157 | 101 | 235 | 3.36e-11 | 64.3 |
| Msa0067140 | AT1G62540.2 | 32.168 | 143 | 83 | 4 | 17 | 158 | 107 | 236 | 3.80e-11 | 64.3 |
| Msa0067140 | AT1G62540.3 | 32.168 | 143 | 83 | 4 | 17 | 158 | 107 | 236 | 4.19e-11 | 63.9 |
| Msa0067140 | AT1G62570.1 | 25.888 | 197 | 136 | 5 | 20 | 208 | 107 | 301 | 6.92e-11 | 63.5 |
| Msa0067140 | AT1G62560.2 | 30.573 | 157 | 88 | 5 | 12 | 158 | 92 | 237 | 7.21e-11 | 63.2 |
| Msa0067140 | AT1G62560.1 | 30.573 | 157 | 88 | 5 | 12 | 158 | 92 | 237 | 8.31e-11 | 63.2 |
Find 84 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAAGGGGTATGCTGAATT+TGG | 0.142332 | 1_2:-31834364 | Msa0067140:CDS |
| CTCTTCAACCCTTCAATTTC+AGG | 0.149369 | 1_2:+31834802 | None:intergenic |
| GTTGTTGGGTCTGGGAATTC+TGG | 0.176673 | 1_2:-31834709 | Msa0067140:CDS |
| GTACTTGACCTTCATATAAA+AGG | 0.212639 | 1_2:+31834221 | None:intergenic |
| TCAAGGGGTATGCTGAATTT+GGG | 0.240991 | 1_2:-31834363 | Msa0067140:CDS |
| CATGTTCTTGTTGTTGGGTC+TGG | 0.258715 | 1_2:-31834718 | Msa0067140:CDS |
| GATGGTGATGCTTAGTAAAA+TGG | 0.306091 | 1_2:-31834295 | Msa0067140:CDS |
| AATTAAGTCTCGAGAGTTAA+AGG | 0.307124 | 1_2:-31834160 | Msa0067140:intron |
| TGTATTGGGCCCCATATGTT+TGG | 0.314085 | 1_2:+31832259 | None:intergenic |
| ATGCTTAGTAAAATGGTTTA+CGG | 0.333034 | 1_2:-31834288 | Msa0067140:CDS |
| GAAGGTGAAGGCTAAGAATA+AGG | 0.345400 | 1_2:-31834899 | Msa0067140:CDS |
| CAAGTTCTAATTCTTGTATT+GGG | 0.347155 | 1_2:+31832245 | None:intergenic |
| GCAAGTTCTAATTCTTGTAT+TGG | 0.352121 | 1_2:+31832244 | None:intergenic |
| AAGTATAACCTCCAAACATA+TGG | 0.364262 | 1_2:-31832270 | Msa0067140:three_prime_UTR |
| GGGAAAGTGATTCATTCAAC+TGG | 0.376100 | 1_2:-31834772 | Msa0067140:CDS |
| GATGAACATGTTCTTGTTGT+TGG | 0.376175 | 1_2:-31834724 | Msa0067140:CDS |
| TGCTTAGTAAAATGGTTTAC+GGG | 0.380793 | 1_2:-31834287 | Msa0067140:CDS |
| ATGATGAAGGTTCTGAGAAA+TGG | 0.387033 | 1_2:-31834921 | Msa0067140:CDS |
| ATCAACCCACAAGTGGCTTA+AGG | 0.388610 | 1_2:-31833009 | Msa0067140:intron |
| AGCCAAGTTACCCTATTCAT+TGG | 0.388713 | 1_2:-31832552 | Msa0067140:CDS |
| ATGTTCTTGTTGTTGGGTCT+GGG | 0.391709 | 1_2:-31834717 | Msa0067140:CDS |
| AAGGCTAAGAATAAGGATTC+TGG | 0.392445 | 1_2:-31834892 | Msa0067140:CDS |
| CATTCAACTGGGTTTAAGAA+TGG | 0.393718 | 1_2:-31834760 | Msa0067140:CDS |
| CCTTCAATTTCAGGTACAAA+AGG | 0.400011 | 1_2:+31834811 | None:intergenic |
| CTATCAAGGAGAGGTTTCTA+TGG | 0.400558 | 1_2:-31832499 | Msa0067140:CDS |
| TATATTGTGTTGGACTATCA+AGG | 0.438069 | 1_2:-31832513 | Msa0067140:CDS |
| ATTCAACTGGGTTTAAGAAT+GGG | 0.438492 | 1_2:-31834759 | Msa0067140:CDS |
| TAAGGATTCTGGTGAGGTTG+AGG | 0.446777 | 1_2:-31834881 | Msa0067140:CDS |
| CTTAAGCATTCTATTTCAGC+TGG | 0.447488 | 1_2:+31833107 | None:intergenic |
| ATGAATAGGGTAACTTGGCT+TGG | 0.450552 | 1_2:+31832555 | None:intergenic |
| AAGGTTCCAACGTCAATAAT+AGG | 0.451735 | 1_2:+31834189 | None:intergenic |
| TTCCAATGAATAGGGTAACT+TGG | 0.456789 | 1_2:+31832550 | None:intergenic |
| TTCTGGCATGGAAATTGCAT+TGG | 0.469456 | 1_2:-31834692 | Msa0067140:CDS |
| ATGAACATGTTCTTGTTGTT+GGG | 0.471420 | 1_2:-31834723 | Msa0067140:CDS |
| TACTTGACCTTCATATAAAA+GGG | 0.473078 | 1_2:+31834222 | None:intergenic |
| GCAAACCTTAAGCCACTTGT+GGG | 0.480163 | 1_2:+31833004 | None:intergenic |
| ATTGGGCCCCATATGTTTGG+AGG | 0.485159 | 1_2:+31832262 | None:intergenic |
| AGTATAACCTCCAAACATAT+GGG | 0.487162 | 1_2:-31832269 | Msa0067140:three_prime_UTR |
| TGAATAGGGTAACTTGGCTT+GGG | 0.488661 | 1_2:+31832556 | None:intergenic |
| GAATACCATCATCATTCAAA+AGG | 0.492685 | 1_2:+31832578 | None:intergenic |
| TCTGATGAAGTATTTGTCAA+TGG | 0.510851 | 1_2:-31834334 | Msa0067140:CDS |
| CAAGGGGTATGCTGAATTTG+GGG | 0.511286 | 1_2:-31834362 | Msa0067140:CDS |
| TGGGGTTGGTAGGCCTAGTG+AGG | 0.512474 | 1_2:-31834247 | Msa0067140:CDS |
| GCTGAAATAGAATGCTTAAG+TGG | 0.513060 | 1_2:-31833104 | Msa0067140:CDS |
| CTTGCTTCGAACAACGATTG+AGG | 0.514809 | 1_2:+31834645 | None:intergenic |
| CGTTGATTAGATTTCAGTTG+AGG | 0.525399 | 1_2:-31832359 | Msa0067140:three_prime_UTR |
| ATATAAAAGGGACCCTCACT+AGG | 0.526447 | 1_2:+31834234 | None:intergenic |
| CTTCAATTTCAGGTACAAAA+GGG | 0.526666 | 1_2:+31834812 | None:intergenic |
| TGCAAACCTTAAGCCACTTG+TGG | 0.528385 | 1_2:+31833003 | None:intergenic |
| CTCAATCGTTGTTCGAAGCA+AGG | 0.531935 | 1_2:-31834644 | Msa0067140:intron |
| GGAATGTATGATGGAAAAGA+AGG | 0.532095 | 1_2:+31835033 | None:intergenic |
| AAGTTACCCTATTCATTGGA+AGG | 0.536623 | 1_2:-31832548 | Msa0067140:CDS |
| GTGGGTTGATCTCTTGAAGC+CGG | 0.536695 | 1_2:+31833022 | None:intergenic |
| GAGAATGCAAAGTATGATGA+AGG | 0.540824 | 1_2:-31834934 | Msa0067140:CDS |
| GGTGAGGTTGAGGAATATGA+AGG | 0.542585 | 1_2:-31834871 | Msa0067140:CDS |
| AGGTTGAGGAATATGAAGGA+AGG | 0.551335 | 1_2:-31834867 | Msa0067140:CDS |
| ATGTATGATGGAAAAGAAGG+TGG | 0.552215 | 1_2:+31835036 | None:intergenic |
| GATGGAAAAGAAGGTGGGAA+TGG | 0.556044 | 1_2:+31835042 | None:intergenic |
| GAAAATAAAGATCAAAGGAG+AGG | 0.566865 | 1_2:-31832308 | Msa0067140:three_prime_UTR |
| GTTATGAAAATAAAGATCAA+AGG | 0.568155 | 1_2:-31832313 | Msa0067140:three_prime_UTR |
| TCACGAATTATGGGGTTGGT+AGG | 0.576228 | 1_2:-31834257 | Msa0067140:CDS |
| GTATTTGTCAATGGAGATGG+TGG | 0.579490 | 1_2:-31834325 | Msa0067140:CDS |
| TGGGTCTGGGAATTCTGGCA+TGG | 0.586713 | 1_2:-31834704 | Msa0067140:CDS |
| GGGGTTGGTAGGCCTAGTGA+GGG | 0.589928 | 1_2:-31834246 | Msa0067140:CDS |
| GGAAAGTGATTCATTCAACT+GGG | 0.594965 | 1_2:-31834771 | Msa0067140:CDS |
| TGTATGATGGAAAAGAAGGT+GGG | 0.596307 | 1_2:+31835037 | None:intergenic |
| AGTTACCCTATTCATTGGAA+GGG | 0.596925 | 1_2:-31832547 | Msa0067140:CDS |
| GAAGTATTTGTCAATGGAGA+TGG | 0.597497 | 1_2:-31834328 | Msa0067140:CDS |
| GAAGGTGGGAATGGTTTGTG+AGG | 0.606122 | 1_2:+31835051 | None:intergenic |
| TGTGTTGGACTATCAAGGAG+AGG | 0.616154 | 1_2:-31832508 | Msa0067140:CDS |
| GGAGATGGTGGATTTAGTGA+TGG | 0.618594 | 1_2:-31834313 | Msa0067140:CDS |
| TTCTGAGAAATGGAAGGTGA+AGG | 0.623363 | 1_2:-31834911 | Msa0067140:CDS |
| GATGTCACGAATTATGGGGT+TGG | 0.629113 | 1_2:-31834261 | Msa0067140:CDS |
| TCAACTGTTCTGTGATACAG+AGG | 0.635504 | 1_2:+31834955 | None:intergenic |
| GCATTGGATCTTATCAACCA+TGG | 0.635858 | 1_2:-31834676 | Msa0067140:CDS |
| GCTTAGTAAAATGGTTTACG+GGG | 0.637942 | 1_2:-31834286 | Msa0067140:CDS |
| AAGTATCCTATTATTGACGT+TGG | 0.642218 | 1_2:-31834195 | Msa0067140:CDS |
| TCAAGAGATCAACCCACAAG+TGG | 0.648193 | 1_2:-31833016 | Msa0067140:CDS |
| TTAGTAAAATGGTTTACGGG+GGG | 0.660749 | 1_2:-31834284 | Msa0067140:CDS |
| TAAGAATAAGGATTCTGGTG+AGG | 0.661843 | 1_2:-31834887 | Msa0067140:CDS |
| CTTAGTAAAATGGTTTACGG+GGG | 0.670652 | 1_2:-31834285 | Msa0067140:CDS |
| GTATAACCTCCAAACATATG+GGG | 0.683885 | 1_2:-31832268 | Msa0067140:three_prime_UTR |
| TAGTAAAATGGTTTACGGGG+GGG | 0.687535 | 1_2:-31834283 | Msa0067140:CDS |
| TGAAGGTTCTGAGAAATGGA+AGG | 0.688803 | 1_2:-31834917 | Msa0067140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAATAAATATATAATTGA+CGG | - | chr1_2:31832663-31832682 | Msa0067140:intron | 10.0% |
| !! | AAAATAAATAATATAAATGC+AGG | - | chr1_2:31832820-31832839 | Msa0067140:intron | 10.0% |
| !!! | TTGATTTTAATGATAATTTA+TGG | + | chr1_2:31833178-31833197 | None:intergenic | 10.0% |
| !!! | TATATTTTTCATATCATTAA+AGG | - | chr1_2:31833699-31833718 | Msa0067140:intron | 10.0% |
| !! | AAAAAAAAAAAAACATGATA+AGG | + | chr1_2:31834445-31834464 | None:intergenic | 10.0% |
| !!! | TAAACTAATTAATTATCTTT+TGG | - | chr1_2:31834602-31834621 | Msa0067140:intron | 10.0% |
| !!! | TATTGTAAAAACTTTTCTTT+AGG | + | chr1_2:31832208-31832227 | None:intergenic | 15.0% |
| !! | AGAATAAATATATAATTGAC+GGG | - | chr1_2:31832664-31832683 | Msa0067140:intron | 15.0% |
| !! | ATGTATTCAAGTATAATTTA+AGG | + | chr1_2:31833210-31833229 | None:intergenic | 15.0% |
| !! | AAAATAAAGGATTAAATTGA+TGG | - | chr1_2:31833251-31833270 | Msa0067140:intron | 15.0% |
| !!! | TATTTGACTTTAATAGTTTA+AGG | - | chr1_2:31833298-31833317 | Msa0067140:intron | 15.0% |
| !! | AACAAATTTATTTAAGTGAA+AGG | - | chr1_2:31833834-31833853 | Msa0067140:intron | 15.0% |
| !!! | ATATCATTTTACTAAAAAGA+TGG | - | chr1_2:31833881-31833900 | Msa0067140:intron | 15.0% |
| !!! | CAAAAAAGAATAGTTTTTTT+AGG | - | chr1_2:31834469-31834488 | Msa0067140:intron | 15.0% |
| !!! | TAATTAATTATCTTTTGGTA+GGG | - | chr1_2:31834607-31834626 | Msa0067140:intron | 15.0% |
| !! | ATTAAAAAGTGAATAAATTG+TGG | + | chr1_2:31835000-31835019 | None:intergenic | 15.0% |
| !!! | CATATATCAATTTATTTTGA+CGG | + | chr1_2:31835035-31835054 | None:intergenic | 15.0% |
| !! | TATACTTGAATACATCAATT+TGG | - | chr1_2:31833215-31833234 | Msa0067140:intron | 20.0% |
| !! | TCCATAAACAAGTAAAATAA+AGG | - | chr1_2:31833238-31833257 | Msa0067140:intron | 20.0% |
| !!! | TCCTTTATTTTACTTGTTTA+TGG | + | chr1_2:31833242-31833261 | None:intergenic | 20.0% |
| !!! | TTCAGAAGATTTTTTTTTGA+GGG | + | chr1_2:31833448-31833467 | None:intergenic | 20.0% |
| !!! | TTTCAGAAGATTTTTTTTTG+AGG | + | chr1_2:31833449-31833468 | None:intergenic | 20.0% |
| !! | AGAATGACATATATTTCAAT+AGG | + | chr1_2:31833561-31833580 | None:intergenic | 20.0% |
| !! | ATTGAAATATATGTCATTCT+AGG | - | chr1_2:31833561-31833580 | Msa0067140:intron | 20.0% |
| !! | TACCTAAAATAACATTTAGA+TGG | - | chr1_2:31833795-31833814 | Msa0067140:intron | 20.0% |
| !! | ACCTAAAATAACATTTAGAT+GGG | - | chr1_2:31833796-31833815 | Msa0067140:intron | 20.0% |
| !! | TAATGTATGTTACATGAAAA+TGG | - | chr1_2:31834517-31834536 | Msa0067140:intron | 20.0% |
| !! | AATGTATGTTACATGAAAAT+GGG | - | chr1_2:31834518-31834537 | Msa0067140:intron | 20.0% |
| !! | AATATACGTCAAAGTATATA+TGG | + | chr1_2:31834570-31834589 | None:intergenic | 20.0% |
| !!! | CTAATTAATTATCTTTTGGT+AGG | - | chr1_2:31834606-31834625 | Msa0067140:intron | 20.0% |
| !! | AAAAATGGTTTATATTGTGT+TGG | - | chr1_2:31834694-31834713 | Msa0067140:CDS | 20.0% |
| !! | GTTATGAAAATAAAGATCAA+AGG | - | chr1_2:31834904-31834923 | Msa0067140:CDS | 20.0% |
| !!! | ACACATTTTAATCACATAAT+TGG | + | chr1_2:31835073-31835092 | None:intergenic | 20.0% |
| !!! | TTTTCTTTAGGAATGTATGA+TGG | + | chr1_2:31832196-31832215 | None:intergenic | 25.0% |
| ! | ATGCTTAGTAAAATGGTTTA+CGG | - | chr1_2:31832929-31832948 | Msa0067140:intron | 25.0% |
| ! | TACTTGACCTTCATATAAAA+GGG | + | chr1_2:31832998-31833017 | None:intergenic | 25.0% |
| !! | TTTTATATGAAGGTCAAGTA+CGG | - | chr1_2:31832998-31833017 | Msa0067140:intron | 25.0% |
| !! | AACCATATTAGGCAAATTTT+AGG | + | chr1_2:31833146-31833165 | None:intergenic | 25.0% |
| !!! | ATCTTCTCTGTCTTTTTTTA+AGG | - | chr1_2:31833490-31833509 | Msa0067140:intron | 25.0% |
| !! | AAATATATGTCATTCTAGGA+AGG | - | chr1_2:31833565-31833584 | Msa0067140:intron | 25.0% |
| ! | CCTAAAATAACATTTAGATG+GGG | - | chr1_2:31833797-31833816 | Msa0067140:intron | 25.0% |
| ! | AGGTTATCTAACTATAAACA+AGG | - | chr1_2:31833854-31833873 | Msa0067140:intron | 25.0% |
| !! | GAAAAGTGCAAATATAATTG+TGG | - | chr1_2:31834033-31834052 | Msa0067140:intron | 25.0% |
| ! | ATTGTGTTATGTGTTATGTT+AGG | - | chr1_2:31834082-31834101 | Msa0067140:intron | 25.0% |
| !! | ATATATGGTCACATTTCTTT+TGG | + | chr1_2:31834555-31834574 | None:intergenic | 25.0% |
| !! | ACTTCATAGATTTTTCATGA+TGG | + | chr1_2:31834785-31834804 | None:intergenic | 25.0% |
| !! | CAAGTTCTAATTCTTGTATT+GGG | + | chr1_2:31834975-31834994 | None:intergenic | 25.0% |
| ! | CTTCAATTTCAGGTACAAAA+GGG | + | chr1_2:31832408-31832427 | None:intergenic | 30.0% |
| ! | CTTTTGTACCTGAAATTGAA+GGG | - | chr1_2:31832407-31832426 | Msa0067140:three_prime_UTR | 30.0% |
| ATTCAACTGGGTTTAAGAAT+GGG | - | chr1_2:31832458-31832477 | Msa0067140:CDS | 30.0% | |
| !! | ATGAACATGTTCTTGTTGTT+GGG | - | chr1_2:31832494-31832513 | Msa0067140:CDS | 30.0% |
| ! | TCTGATGAAGTATTTGTCAA+TGG | - | chr1_2:31832883-31832902 | Msa0067140:intron | 30.0% |
| TGCTTAGTAAAATGGTTTAC+GGG | - | chr1_2:31832930-31832949 | Msa0067140:intron | 30.0% | |
| GTACTTGACCTTCATATAAA+AGG | + | chr1_2:31832999-31833018 | None:intergenic | 30.0% | |
| AAGTATCCTATTATTGACGT+TGG | - | chr1_2:31833022-31833041 | Msa0067140:CDS | 30.0% | |
| ! | TCGAGACTTAATTTTGTGAA+AGG | + | chr1_2:31833050-31833069 | None:intergenic | 30.0% |
| AATTAAGTCTCGAGAGTTAA+AGG | - | chr1_2:31833057-31833076 | Msa0067140:CDS | 30.0% | |
| ACGTTAGAGATAATTGACAT+TGG | - | chr1_2:31833081-31833100 | Msa0067140:CDS | 30.0% | |
| !! | TAATTGACATTGGTTTGCTT+TGG | - | chr1_2:31833091-31833110 | Msa0067140:CDS | 30.0% |
| CACCTAAAATTTGCCTAATA+TGG | - | chr1_2:31833141-31833160 | Msa0067140:intron | 30.0% | |
| ! | GGAAAGTTTGAAACCATATT+AGG | + | chr1_2:31833157-31833176 | None:intergenic | 30.0% |
| TAATAGTTTAAGGACCAAAG+TGG | - | chr1_2:31833308-31833327 | Msa0067140:intron | 30.0% | |
| !!! | CCCCATCTAAATGTTATTTT+AGG | + | chr1_2:31833800-31833819 | None:intergenic | 30.0% |
| AAGAATGTCCTCTTCAAAAA+TGG | - | chr1_2:31834137-31834156 | Msa0067140:intron | 30.0% | |
| GAATAGATCAATATCAGCAA+CGG | - | chr1_2:31834335-31834354 | Msa0067140:CDS | 30.0% | |
| ! | GATTACCTTTTGAATGATGA+TGG | - | chr1_2:31834634-31834653 | Msa0067140:intron | 30.0% |
| GAATACCATCATCATTCAAA+AGG | + | chr1_2:31834642-31834661 | None:intergenic | 30.0% | |
| ! | TTTTTCCCTTCCAATGAATA+GGG | + | chr1_2:31834678-31834697 | None:intergenic | 30.0% |
| !!! | TTTTTTCCCTTCCAATGAAT+AGG | + | chr1_2:31834679-31834698 | None:intergenic | 30.0% |
| ATTCATTGGAAGGGAAAAAA+TGG | - | chr1_2:31834679-31834698 | Msa0067140:CDS | 30.0% | |
| TATATTGTGTTGGACTATCA+AGG | - | chr1_2:31834704-31834723 | Msa0067140:CDS | 30.0% | |
| GAAAATAAAGATCAAAGGAG+AGG | - | chr1_2:31834909-31834928 | Msa0067140:CDS | 30.0% | |
| AAGTATAACCTCCAAACATA+TGG | - | chr1_2:31834947-31834966 | Msa0067140:CDS | 30.0% | |
| AGTATAACCTCCAAACATAT+GGG | - | chr1_2:31834948-31834967 | Msa0067140:CDS | 30.0% | |
| ! | GCAAGTTCTAATTCTTGTAT+TGG | + | chr1_2:31834976-31834995 | None:intergenic | 30.0% |
| ! | TGTATGATGGAAAAGAAGGT+GGG | + | chr1_2:31832183-31832202 | None:intergenic | 35.0% |
| ! | ATGTATGATGGAAAAGAAGG+TGG | + | chr1_2:31832184-31832203 | None:intergenic | 35.0% |
| ! | GGAATGTATGATGGAAAAGA+AGG | + | chr1_2:31832187-31832206 | None:intergenic | 35.0% |
| GAGAATGCAAAGTATGATGA+AGG | - | chr1_2:31832283-31832302 | Msa0067140:three_prime_UTR | 35.0% | |
| !! | ATGATGAAGGTTCTGAGAAA+TGG | - | chr1_2:31832296-31832315 | Msa0067140:three_prime_UTR | 35.0% |
| AAGGCTAAGAATAAGGATTC+TGG | - | chr1_2:31832325-31832344 | Msa0067140:three_prime_UTR | 35.0% | |
| TAAGAATAAGGATTCTGGTG+AGG | - | chr1_2:31832330-31832349 | Msa0067140:three_prime_UTR | 35.0% | |
| ! | GGAATATGAAGGAAGGTTTT+TGG | - | chr1_2:31832357-31832376 | Msa0067140:three_prime_UTR | 35.0% |
| ! | CCTTCAATTTCAGGTACAAA+AGG | + | chr1_2:31832409-31832428 | None:intergenic | 35.0% |
| ! | CCTTTTGTACCTGAAATTGA+AGG | - | chr1_2:31832406-31832425 | Msa0067140:three_prime_UTR | 35.0% |
| ! | AAGGGTTGAAGAGTTTTACT+GGG | - | chr1_2:31832425-31832444 | Msa0067140:exon | 35.0% |
| GGAAAGTGATTCATTCAACT+GGG | - | chr1_2:31832446-31832465 | Msa0067140:CDS | 35.0% | |
| CATTCAACTGGGTTTAAGAA+TGG | - | chr1_2:31832457-31832476 | Msa0067140:CDS | 35.0% | |
| ! | GATGAACATGTTCTTGTTGT+TGG | - | chr1_2:31832493-31832512 | Msa0067140:CDS | 35.0% |
| ! | GTTAGCTGTTGATTATACGT+AGG | - | chr1_2:31832738-31832757 | Msa0067140:intron | 35.0% |
| ! | GAAGTATTTGTCAATGGAGA+TGG | - | chr1_2:31832889-31832908 | Msa0067140:intron | 35.0% |
| ! | GATGGTGATGCTTAGTAAAA+TGG | - | chr1_2:31832922-31832941 | Msa0067140:intron | 35.0% |
| GCTTAGTAAAATGGTTTACG+GGG | - | chr1_2:31832931-31832950 | Msa0067140:intron | 35.0% | |
| CTTAGTAAAATGGTTTACGG+GGG | - | chr1_2:31832932-31832951 | Msa0067140:intron | 35.0% | |
| TTAGTAAAATGGTTTACGGG+GGG | - | chr1_2:31832933-31832952 | Msa0067140:intron | 35.0% | |
| AAGGTTCCAACGTCAATAAT+AGG | + | chr1_2:31833031-31833050 | None:intergenic | 35.0% | |
| TGTTGTTGTGACATGACTAA+TGG | - | chr1_2:31834057-31834076 | Msa0067140:intron | 35.0% | |
| GTTGTTGTGACATGACTAAT+GGG | - | chr1_2:31834058-31834077 | Msa0067140:intron | 35.0% | |
| CTTAAGCATTCTATTTCAGC+TGG | + | chr1_2:31834113-31834132 | None:intergenic | 35.0% | |
| GCTGAAATAGAATGCTTAAG+TGG | - | chr1_2:31834113-31834132 | Msa0067140:intron | 35.0% | |
| !! | GCAATTGACCATTTTTGAAG+AGG | + | chr1_2:31834148-31834167 | None:intergenic | 35.0% |
| ! | GACTCTATTATTTTCTGCAC+CGG | - | chr1_2:31834176-31834195 | Msa0067140:CDS | 35.0% |
| TTCCAATGAATAGGGTAACT+TGG | + | chr1_2:31834670-31834689 | None:intergenic | 35.0% | |
| AAGTTACCCTATTCATTGGA+AGG | - | chr1_2:31834669-31834688 | Msa0067140:CDS | 35.0% | |
| AGTTACCCTATTCATTGGAA+GGG | - | chr1_2:31834670-31834689 | Msa0067140:CDS | 35.0% | |
| ! | CGTTGATTAGATTTCAGTTG+AGG | - | chr1_2:31834858-31834877 | Msa0067140:CDS | 35.0% |
| GTATAACCTCCAAACATATG+GGG | - | chr1_2:31834949-31834968 | Msa0067140:CDS | 35.0% | |
| TCAACTGTTCTGTGATACAG+AGG | + | chr1_2:31832265-31832284 | None:intergenic | 40.0% | |
| !! | TGAAGGTTCTGAGAAATGGA+AGG | - | chr1_2:31832300-31832319 | Msa0067140:three_prime_UTR | 40.0% |
| ! | TTCTGAGAAATGGAAGGTGA+AGG | - | chr1_2:31832306-31832325 | Msa0067140:three_prime_UTR | 40.0% |
| GAAGGTGAAGGCTAAGAATA+AGG | - | chr1_2:31832318-31832337 | Msa0067140:three_prime_UTR | 40.0% | |
| AGGTTGAGGAATATGAAGGA+AGG | - | chr1_2:31832350-31832369 | Msa0067140:three_prime_UTR | 40.0% | |
| !!! | TGAAGGAAGGTTTTTGGTTG+TGG | - | chr1_2:31832363-31832382 | Msa0067140:three_prime_UTR | 40.0% |
| CTCTTCAACCCTTCAATTTC+AGG | + | chr1_2:31832418-31832437 | None:intergenic | 40.0% | |
| ! | GAAGGGTTGAAGAGTTTTAC+TGG | - | chr1_2:31832424-31832443 | Msa0067140:exon | 40.0% |
| GGGAAAGTGATTCATTCAAC+TGG | - | chr1_2:31832445-31832464 | Msa0067140:CDS | 40.0% | |
| !! | ATGTTCTTGTTGTTGGGTCT+GGG | - | chr1_2:31832500-31832519 | Msa0067140:CDS | 40.0% |
| TTCTGGCATGGAAATTGCAT+TGG | - | chr1_2:31832525-31832544 | Msa0067140:CDS | 40.0% | |
| GCATTGGATCTTATCAACCA+TGG | - | chr1_2:31832541-31832560 | Msa0067140:CDS | 40.0% | |
| TAATTGACGGGATGAATGAG+TGG | - | chr1_2:31832676-31832695 | Msa0067140:intron | 40.0% | |
| ! | TGCAGGTTCACATTTTGTCA+AGG | - | chr1_2:31832837-31832856 | Msa0067140:intron | 40.0% |
| ! | GCAGGTTCACATTTTGTCAA+GGG | - | chr1_2:31832838-31832857 | Msa0067140:intron | 40.0% |
| ! | CAGGTTCACATTTTGTCAAG+GGG | - | chr1_2:31832839-31832858 | Msa0067140:intron | 40.0% |
| ! | TCAAGGGGTATGCTGAATTT+GGG | - | chr1_2:31832854-31832873 | Msa0067140:intron | 40.0% |
| GTATTTGTCAATGGAGATGG+TGG | - | chr1_2:31832892-31832911 | Msa0067140:intron | 40.0% | |
| TAGTAAAATGGTTTACGGGG+GGG | - | chr1_2:31832934-31832953 | Msa0067140:intron | 40.0% | |
| ATATAAAAGGGACCCTCACT+AGG | + | chr1_2:31832986-31833005 | None:intergenic | 40.0% | |
| ! | TGAGGGTCCCTTTTATATGA+AGG | - | chr1_2:31832988-31833007 | Msa0067140:intron | 40.0% |
| ! | TCAAGCGAGTTACTTTGCTT+GGG | + | chr1_2:31833931-31833950 | None:intergenic | 40.0% |
| ! | TTCAAGCGAGTTACTTTGCT+TGG | + | chr1_2:31833932-31833951 | None:intergenic | 40.0% |
| TGAATAGGGTAACTTGGCTT+GGG | + | chr1_2:31834664-31834683 | None:intergenic | 40.0% | |
| ATGAATAGGGTAACTTGGCT+TGG | + | chr1_2:31834665-31834684 | None:intergenic | 40.0% | |
| AGCCAAGTTACCCTATTCAT+TGG | - | chr1_2:31834665-31834684 | Msa0067140:CDS | 40.0% | |
| CTATCAAGGAGAGGTTTCTA+TGG | - | chr1_2:31834718-31834737 | Msa0067140:CDS | 40.0% | |
| GATGGAAAAGAAGGTGGGAA+TGG | + | chr1_2:31832178-31832197 | None:intergenic | 45.0% | |
| TAAGGATTCTGGTGAGGTTG+AGG | - | chr1_2:31832336-31832355 | Msa0067140:three_prime_UTR | 45.0% | |
| GGTGAGGTTGAGGAATATGA+AGG | - | chr1_2:31832346-31832365 | Msa0067140:three_prime_UTR | 45.0% | |
| !!! | AGGTTTTTGGTTGTGGCTAG+TGG | - | chr1_2:31832370-31832389 | Msa0067140:three_prime_UTR | 45.0% |
| !! | CATGTTCTTGTTGTTGGGTC+TGG | - | chr1_2:31832499-31832518 | Msa0067140:CDS | 45.0% |
| !! | CGATTGAGGTTTTAGCACCA+TGG | + | chr1_2:31832561-31832580 | None:intergenic | 45.0% |
| CTTGCTTCGAACAACGATTG+AGG | + | chr1_2:31832575-31832594 | None:intergenic | 45.0% | |
| CTCAATCGTTGTTCGAAGCA+AGG | - | chr1_2:31832573-31832592 | Msa0067140:CDS | 45.0% | |
| ! | GTCAAGGGGTATGCTGAATT+TGG | - | chr1_2:31832853-31832872 | Msa0067140:intron | 45.0% |
| ! | CAAGGGGTATGCTGAATTTG+GGG | - | chr1_2:31832855-31832874 | Msa0067140:intron | 45.0% |
| !! | GGAGATGGTGGATTTAGTGA+TGG | - | chr1_2:31832904-31832923 | Msa0067140:intron | 45.0% |
| GATGTCACGAATTATGGGGT+TGG | - | chr1_2:31832956-31832975 | Msa0067140:intron | 45.0% | |
| ! | TCACGAATTATGGGGTTGGT+AGG | - | chr1_2:31832960-31832979 | Msa0067140:intron | 45.0% |
| TTAAGGACCAAAGTGGTGAG+AGG | - | chr1_2:31833315-31833334 | Msa0067140:intron | 45.0% | |
| TAAGGACCAAAGTGGTGAGA+GGG | - | chr1_2:31833316-31833335 | Msa0067140:intron | 45.0% | |
| !! | GGTGAGAGGGTATTGGTTTA+AGG | - | chr1_2:31833329-31833348 | Msa0067140:intron | 45.0% |
| ! | CAAGCGAGTTACTTTGCTTG+GGG | + | chr1_2:31833930-31833949 | None:intergenic | 45.0% |
| TCAAGAGATCAACCCACAAG+TGG | - | chr1_2:31834201-31834220 | Msa0067140:CDS | 45.0% | |
| ATCAACCCACAAGTGGCTTA+AGG | - | chr1_2:31834208-31834227 | Msa0067140:CDS | 45.0% | |
| GCAAACCTTAAGCCACTTGT+GGG | + | chr1_2:31834216-31834235 | None:intergenic | 45.0% | |
| TGCAAACCTTAAGCCACTTG+TGG | + | chr1_2:31834217-31834236 | None:intergenic | 45.0% | |
| TGTGTTGGACTATCAAGGAG+AGG | - | chr1_2:31834709-31834728 | Msa0067140:CDS | 45.0% | |
| TGTATTGGGCCCCATATGTT+TGG | + | chr1_2:31834961-31834980 | None:intergenic | 45.0% | |
| ! | GAAGGTGGGAATGGTTTGTG+AGG | + | chr1_2:31832169-31832188 | None:intergenic | 50.0% |
| GTTGTTGGGTCTGGGAATTC+TGG | - | chr1_2:31832508-31832527 | Msa0067140:CDS | 50.0% | |
| GGGGGGATGTCACGAATTAT+GGG | - | chr1_2:31832951-31832970 | Msa0067140:intron | 50.0% | |
| GGGGGATGTCACGAATTATG+GGG | - | chr1_2:31832952-31832971 | Msa0067140:intron | 50.0% | |
| CCAATACCCTCTCACCACTT+TGG | + | chr1_2:31833325-31833344 | None:intergenic | 50.0% | |
| ! | CCAAAGTGGTGAGAGGGTAT+TGG | - | chr1_2:31833322-31833341 | Msa0067140:intron | 50.0% |
| !! | GTGGGTTGATCTCTTGAAGC+CGG | + | chr1_2:31834198-31834217 | None:intergenic | 50.0% |
| ATTGGGCCCCATATGTTTGG+AGG | + | chr1_2:31834958-31834977 | None:intergenic | 50.0% | |
| TGGGTCTGGGAATTCTGGCA+TGG | - | chr1_2:31832513-31832532 | Msa0067140:CDS | 55.0% | |
| GGGGGGGATGTCACGAATTA+TGG | - | chr1_2:31832950-31832969 | Msa0067140:intron | 55.0% | |
| !! | TGGGGTTGGTAGGCCTAGTG+AGG | - | chr1_2:31832970-31832989 | Msa0067140:intron | 60.0% |
| !! | GGGGTTGGTAGGCCTAGTGA+GGG | - | chr1_2:31832971-31832990 | Msa0067140:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 31832142 | 31835097 | 31832142 | ID=Msa0067140;Name=Msa0067140 |
| chr1_2 | mRNA | 31832142 | 31835097 | 31832142 | ID=Msa0067140-mRNA-1;Parent=Msa0067140;Name=Msa0067140-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|1|1|1|1|4|296|329 |
| chr1_2 | exon | 31832142 | 31832611 | 31832142 | ID=Msa0067140-mRNA-1:exon:10461;Parent=Msa0067140-mRNA-1 |
| chr1_2 | exon | 31833010 | 31833135 | 31833010 | ID=Msa0067140-mRNA-1:exon:10460;Parent=Msa0067140-mRNA-1 |
| chr1_2 | exon | 31834161 | 31834397 | 31834161 | ID=Msa0067140-mRNA-1:exon:10459;Parent=Msa0067140-mRNA-1 |
| chr1_2 | exon | 31834645 | 31835097 | 31834645 | ID=Msa0067140-mRNA-1:exon:10458;Parent=Msa0067140-mRNA-1 |
| chr1_2 | CDS | 31834645 | 31835097 | 31834645 | ID=Msa0067140-mRNA-1:cds;Parent=Msa0067140-mRNA-1 |
| chr1_2 | CDS | 31834161 | 31834397 | 31834161 | ID=Msa0067140-mRNA-1:cds;Parent=Msa0067140-mRNA-1 |
| chr1_2 | CDS | 31833010 | 31833135 | 31833010 | ID=Msa0067140-mRNA-1:cds;Parent=Msa0067140-mRNA-1 |
| chr1_2 | CDS | 31832438 | 31832611 | 31832438 | ID=Msa0067140-mRNA-1:cds;Parent=Msa0067140-mRNA-1 |
| chr1_2 | three_prime_UTR | 31832142 | 31832437 | 31832142 | ID=Msa0067140-mRNA-1:three_prime_utr;Parent=Msa0067140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
