Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112590 | XP_013450334.1 | 96.606 | 383 | 13 | 0 | 1 | 383 | 1 | 383 | 0.0 | 770 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112590 | sp|Q9FVQ0|YUC10_ARATH | 47.606 | 376 | 197 | 0 | 8 | 383 | 5 | 380 | 1.73e-138 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112590 | A0A072U3V7 | 96.606 | 383 | 13 | 0 | 1 | 383 | 1 | 383 | 0.0 | 770 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa0112590 | 0.804215 | 2.404326e-49 | -8.615850e-47 |
| Msa0018650 | Msa0112590 | 0.983203 | 4.169739e-157 | -8.615850e-47 |
| Msa0021510 | Msa0112590 | 0.813348 | 2.678701e-51 | -8.615850e-47 |
| Msa0035150 | Msa0112590 | 0.811681 | 6.198407e-51 | -8.615850e-47 |
| Msa0067140 | Msa0112590 | 0.921039 | 5.960794e-88 | -8.615850e-47 |
| Msa0079070 | Msa0112590 | 0.801395 | 9.188527e-49 | -8.615850e-47 |
| Msa0105070 | Msa0112590 | 0.805522 | 1.281713e-49 | -8.615850e-47 |
| Msa0112590 | Msa0114060 | 0.803366 | 3.607615e-49 | -8.615850e-47 |
| Msa0112590 | Msa0131770 | 0.810150 | 1.329938e-50 | -8.615850e-47 |
| Msa0112590 | Msa0158480 | 0.906543 | 1.326330e-80 | -8.615850e-47 |
| Msa0112590 | Msa0165210 | 0.812667 | 3.777377e-51 | -8.615850e-47 |
| Msa0112590 | Msa0178960 | 0.818871 | 1.563096e-52 | -8.615850e-47 |
| Msa0112590 | Msa0178970 | 0.808638 | 2.807291e-50 | -8.615850e-47 |
| Msa0112590 | Msa0180500 | 0.822948 | 1.802415e-53 | -8.615850e-47 |
| Msa0112590 | Msa0212990 | 0.802465 | 5.539024e-49 | -8.615850e-47 |
| Msa0112590 | Msa0215320 | -0.800237 | 1.583319e-48 | -8.615850e-47 |
| Msa0112590 | Msa0226890 | 0.802666 | 5.034789e-49 | -8.615850e-47 |
| Msa0112590 | Msa0233300 | 0.803012 | 4.270376e-49 | -8.615850e-47 |
| Msa0112590 | Msa0251320 | 0.801072 | 1.070076e-48 | -8.615850e-47 |
| Msa0112590 | Msa0330340 | 0.803564 | 3.281803e-49 | -8.615850e-47 |
| Msa0112590 | Msa0343850 | 0.800319 | 1.523665e-48 | -8.615850e-47 |
| Msa0112590 | Msa0395790 | 0.800704 | 1.271927e-48 | -8.615850e-47 |
| Msa0112590 | Msa0409690 | 0.801977 | 6.978103e-49 | -8.615850e-47 |
| Msa0112590 | Msa0416650 | 0.830185 | 3.385378e-55 | -8.615850e-47 |
| Msa0112590 | Msa0424320 | 0.829261 | 5.683964e-55 | -8.615850e-47 |
| Msa0112590 | Msa0444750 | -0.803749 | 3.004407e-49 | -8.615850e-47 |
| Msa0112590 | Msa0479340 | 0.802786 | 4.755545e-49 | -8.615850e-47 |
| Msa0112590 | Msa0495330 | 0.807482 | 4.947689e-50 | -8.615850e-47 |
| Msa0112590 | Msa0512750 | 0.811349 | 7.319567e-51 | -8.615850e-47 |
| Msa0112590 | Msa0523940 | 0.846170 | 2.570362e-59 | -8.615850e-47 |
| Msa0112590 | Msa0562440 | 0.833255 | 5.924664e-56 | -8.615850e-47 |
| Msa0112590 | Msa0585230 | 0.808065 | 3.718721e-50 | -8.615850e-47 |
| Msa0112590 | Msa0614900 | 0.802638 | 5.101062e-49 | -8.615850e-47 |
| Msa0112590 | Msa0641670 | 0.819732 | 9.953172e-53 | -8.615850e-47 |
| Msa0112590 | Msa0647170 | 0.804539 | 2.058284e-49 | -8.615850e-47 |
| Msa0112590 | Msa0661650 | 0.817316 | 3.512339e-52 | -8.615850e-47 |
| Msa0112590 | Msa0673460 | 0.800043 | 1.734570e-48 | -8.615850e-47 |
| Msa0112590 | Msa0701010 | 0.831586 | 1.535184e-55 | -8.615850e-47 |
| Msa0112590 | Msa0731940 | 0.814528 | 1.471520e-51 | -8.615850e-47 |
| Msa0112590 | Msa0735170 | 0.815729 | 7.963915e-52 | -8.615850e-47 |
| Msa0112590 | Msa0743720 | 0.802523 | 5.387213e-49 | -8.615850e-47 |
| Msa0112590 | Msa0753720 | 0.800306 | 1.533091e-48 | -8.615850e-47 |
| Msa0112590 | Msa0760130 | 0.803084 | 4.126938e-49 | -8.615850e-47 |
| Msa0112590 | Msa0767760 | 0.802158 | 6.405282e-49 | -8.615850e-47 |
| Msa0112590 | Msa0768290 | 0.805783 | 1.130048e-49 | -8.615850e-47 |
| Msa0112590 | Msa0768370 | 0.815269 | 1.007908e-51 | -8.615850e-47 |
| Msa0112590 | Msa0807370 | 0.810178 | 1.311833e-50 | -8.615850e-47 |
| Msa0112590 | Msa0820850 | 0.805329 | 1.406688e-49 | -8.615850e-47 |
| Msa0112590 | Msa0832340 | 0.810596 | 1.065465e-50 | -8.615850e-47 |
| Msa0112590 | Msa0844490 | 0.809675 | 1.682922e-50 | -8.615850e-47 |
| Msa0112590 | Msa0844570 | 0.805082 | 1.584955e-49 | -8.615850e-47 |
| Msa0112590 | Msa0849030 | 0.834743 | 2.512004e-56 | -8.615850e-47 |
| Msa0112590 | Msa0857640 | 0.812340 | 4.453187e-51 | -8.615850e-47 |
| Msa0112590 | Msa0861130 | 0.809741 | 1.628648e-50 | -8.615850e-47 |
| Msa0112590 | Msa0877250 | 0.835284 | 1.835446e-56 | -8.615850e-47 |
| Msa0112590 | Msa0884470 | 0.810663 | 1.030824e-50 | -8.615850e-47 |
| Msa0112590 | Msa0897330 | 0.808740 | 2.670072e-50 | -8.615850e-47 |
| Msa0112590 | Msa0899430 | 0.822876 | 1.873202e-53 | -8.615850e-47 |
| Msa0112590 | Msa0899450 | 0.835256 | 1.865102e-56 | -8.615850e-47 |
| Msa0112590 | Msa0907260 | 0.800344 | 1.505969e-48 | -8.615850e-47 |
| Msa0112590 | Msa0927380 | 0.838288 | 3.143944e-57 | -8.615850e-47 |
| Msa0112590 | Msa0933100 | 0.805493 | 1.299585e-49 | -8.615850e-47 |
| Msa0112590 | Msa0953120 | 0.821261 | 4.434792e-53 | -8.615850e-47 |
| Msa0112590 | Msa0958550 | 0.811586 | 6.500410e-51 | -8.615850e-47 |
| Msa0112590 | Msa0964900 | 0.824783 | 6.694492e-54 | -8.615850e-47 |
| Msa0112590 | Msa0967280 | 0.808966 | 2.388825e-50 | -8.615850e-47 |
| Msa0112590 | Msa0969520 | 0.821392 | 4.136570e-53 | -8.615850e-47 |
| Msa0112590 | Msa0974080 | 0.821259 | 4.439686e-53 | -8.615850e-47 |
| Msa0112590 | Msa0976670 | 0.800503 | 1.398154e-48 | -8.615850e-47 |
| Msa0112590 | Msa0991830 | 0.808786 | 2.609906e-50 | -8.615850e-47 |
| Msa0112590 | Msa0999220 | 0.804684 | 1.919516e-49 | -8.615850e-47 |
| Msa0112590 | Msa1000860 | 0.805273 | 1.445826e-49 | -8.615850e-47 |
| Msa0112590 | Msa1000880 | 0.804843 | 1.778059e-49 | -8.615850e-47 |
| Msa0112590 | Msa1000890 | 0.833052 | 6.656076e-56 | -8.615850e-47 |
| Msa0112590 | Msa1000900 | 0.832300 | 1.022718e-55 | -8.615850e-47 |
| Msa0112590 | Msa1003620 | 0.823670 | 1.222083e-53 | -8.615850e-47 |
| Msa0112590 | Msa1014540 | 0.849112 | 3.985048e-60 | -8.615850e-47 |
| Msa0112590 | Msa1014990 | 0.810303 | 1.232444e-50 | -8.615850e-47 |
| Msa0112590 | Msa1019150 | 0.808023 | 3.796358e-50 | -8.615850e-47 |
| Msa0112590 | Msa1028230 | 0.811591 | 6.484942e-51 | -8.615850e-47 |
| Msa0112590 | Msa1030970 | 0.801595 | 8.361419e-49 | -8.615850e-47 |
| Msa0112590 | Msa1039800 | 0.807461 | 4.997155e-50 | -8.615850e-47 |
| Msa0112590 | Msa1046460 | 0.818251 | 2.160652e-52 | -8.615850e-47 |
| Msa0112590 | Msa1075220 | -0.824883 | 6.341725e-54 | -8.615850e-47 |
| Msa0112590 | Msa1075650 | 0.810370 | 1.192495e-50 | -8.615850e-47 |
| Msa0112590 | Msa1082500 | 0.808955 | 2.401811e-50 | -8.615850e-47 |
| Msa0112590 | Msa1082580 | 0.811972 | 5.357964e-51 | -8.615850e-47 |
| Msa0112590 | Msa1083840 | 0.805378 | 1.374290e-49 | -8.615850e-47 |
| Msa0112590 | Msa1090260 | 0.805099 | 1.572202e-49 | -8.615850e-47 |
| Msa0112590 | Msa1100050 | 0.800214 | 1.600425e-48 | -8.615850e-47 |
| Msa0112590 | Msa1104090 | 0.803135 | 4.028293e-49 | -8.615850e-47 |
| Msa0112590 | Msa1112300 | 0.807903 | 4.026227e-50 | -8.615850e-47 |
| Msa0112590 | Msa1116130 | -0.802543 | 5.337075e-49 | -8.615850e-47 |
| Msa0112590 | Msa1121490 | 0.821090 | 4.856814e-53 | -8.615850e-47 |
| Msa0112590 | Msa1137570 | 0.837849 | 4.076173e-57 | -8.615850e-47 |
| Msa0112590 | Msa1139000 | -0.814363 | 1.600448e-51 | -8.615850e-47 |
| Msa0112590 | Msa1147740 | 0.818718 | 1.693252e-52 | -8.615850e-47 |
| Msa0112590 | Msa1162550 | -0.825124 | 5.561420e-54 | -8.615850e-47 |
| Msa0112590 | Msa1174040 | 0.800606 | 1.332122e-48 | -8.615850e-47 |
| Msa0112590 | Msa1225130 | 0.812577 | 3.953325e-51 | -8.615850e-47 |
| Msa0112590 | Msa1228590 | 0.811818 | 5.787417e-51 | -8.615850e-47 |
| Msa0112590 | Msa1253020 | 0.805669 | 1.193662e-49 | -8.615850e-47 |
| Msa0112590 | Msa1276890 | 0.820251 | 7.569736e-53 | -8.615850e-47 |
| Msa0112590 | Msa1277660 | 0.806517 | 7.917973e-50 | -8.615850e-47 |
| Msa0112590 | Msa1283860 | 0.801694 | 7.978687e-49 | -8.615850e-47 |
| Msa0112590 | Msa1284680 | 0.828957 | 6.733045e-55 | -8.615850e-47 |
| Msa0112590 | Msa1286800 | 0.820202 | 7.768543e-53 | -8.615850e-47 |
| Msa0112590 | Msa1287190 | 0.808022 | 3.798780e-50 | -8.615850e-47 |
| Msa0112590 | Msa1353470 | 0.830578 | 2.713400e-55 | -8.615850e-47 |
| Msa0112590 | Msa1366810 | 0.834822 | 2.399661e-56 | -8.615850e-47 |
| Msa0112590 | Msa1372760 | 0.802218 | 6.227000e-49 | -8.615850e-47 |
| Msa0112590 | Msa1410690 | 0.809046 | 2.296009e-50 | -8.615850e-47 |
| Msa0112590 | Msa1427230 | 0.805698 | 1.177271e-49 | -8.615850e-47 |
| Msa0112590 | Msa1435270 | 0.808887 | 2.483402e-50 | -8.615850e-47 |
| Msa0112590 | Msa1436650 | 0.807387 | 5.183019e-50 | -8.615850e-47 |
| Msa0112590 | Msa1448640 | 0.804258 | 2.355076e-49 | -8.615850e-47 |
| Msa0112590 | Msa1460830 | 0.804320 | 2.286060e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112590 | MtrunA17_Chr7g0268611 | 96.606 | 383 | 13 | 0 | 1 | 383 | 1 | 383 | 0.0 | 770 |
| Msa0112590 | MtrunA17_Chr7g0268621 | 67.647 | 374 | 119 | 2 | 8 | 380 | 6 | 378 | 0.0 | 538 |
| Msa0112590 | MtrunA17_Chr8g0350371 | 49.322 | 369 | 187 | 0 | 8 | 376 | 6 | 374 | 1.09e-137 | 397 |
| Msa0112590 | MtrunA17_Chr5g0412881 | 50.136 | 369 | 184 | 0 | 8 | 376 | 6 | 374 | 6.83e-137 | 395 |
| Msa0112590 | MtrunA17_Chr3g0125701 | 49.864 | 369 | 185 | 0 | 8 | 376 | 7 | 375 | 4.87e-133 | 386 |
| Msa0112590 | MtrunA17_Chr3g0125711 | 49.051 | 369 | 188 | 0 | 8 | 376 | 7 | 375 | 1.04e-130 | 380 |
| Msa0112590 | MtrunA17_Chr3g0125691 | 49.322 | 369 | 187 | 0 | 8 | 376 | 7 | 375 | 1.34e-130 | 380 |
| Msa0112590 | MtrunA17_Chr3g0139441 | 45.910 | 379 | 199 | 2 | 9 | 382 | 40 | 417 | 5.16e-122 | 359 |
| Msa0112590 | MtrunA17_Chr6g0485621 | 44.648 | 383 | 203 | 4 | 9 | 383 | 33 | 414 | 1.26e-119 | 353 |
| Msa0112590 | MtrunA17_Chr1g0182991 | 45.263 | 380 | 198 | 5 | 9 | 382 | 26 | 401 | 1.39e-119 | 353 |
| Msa0112590 | MtrunA17_Chr1g0147221 | 46.296 | 378 | 196 | 3 | 9 | 381 | 43 | 418 | 1.48e-119 | 353 |
| Msa0112590 | MtrunA17_Chr7g0262591 | 43.272 | 379 | 203 | 4 | 9 | 382 | 25 | 396 | 5.52e-116 | 343 |
| Msa0112590 | MtrunA17_Chr1g0148801 | 43.421 | 380 | 204 | 4 | 9 | 383 | 17 | 390 | 8.03e-115 | 340 |
| Msa0112590 | MtrunA17_Chr1g0169111 | 44.800 | 375 | 198 | 4 | 9 | 376 | 103 | 475 | 8.82e-115 | 343 |
| Msa0112590 | MtrunA17_Chr7g0262471 | 40.193 | 311 | 174 | 4 | 77 | 382 | 214 | 517 | 1.38e-78 | 251 |
| Msa0112590 | MtrunA17_Chr4g0025641 | 51.000 | 200 | 98 | 0 | 8 | 207 | 16 | 215 | 6.57e-70 | 219 |
| Msa0112590 | MtrunA17_Chr4g0025651 | 45.882 | 170 | 91 | 1 | 207 | 376 | 1 | 169 | 7.60e-47 | 158 |
| Msa0112590 | MtrunA17_Chr3g0129991 | 46.154 | 117 | 63 | 0 | 68 | 184 | 3 | 119 | 2.70e-33 | 120 |
| Msa0112590 | MtrunA17_Chr8g0352481 | 25.957 | 235 | 140 | 5 | 7 | 214 | 3 | 230 | 1.07e-15 | 78.2 |
| Msa0112590 | MtrunA17_Chr8g0352461 | 24.686 | 239 | 147 | 6 | 7 | 217 | 3 | 236 | 2.30e-15 | 77.4 |
| Msa0112590 | MtrunA17_Chr3g0091441 | 25.506 | 247 | 137 | 6 | 4 | 214 | 9 | 244 | 5.04e-14 | 73.2 |
| Msa0112590 | MtrunA17_Chr3g0130001 | 53.488 | 43 | 20 | 0 | 4 | 46 | 2 | 44 | 6.17e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112590 | AT1G48910.1 | 47.606 | 376 | 197 | 0 | 8 | 383 | 5 | 380 | 1.76e-139 | 402 |
| Msa0112590 | AT1G21430.1 | 45.692 | 383 | 202 | 5 | 1 | 380 | 1 | 380 | 1.46e-123 | 362 |
| Msa0112590 | AT1G04610.1 | 46.194 | 381 | 195 | 5 | 9 | 381 | 38 | 416 | 1.31e-121 | 359 |
| Msa0112590 | AT4G13260.1 | 45.040 | 373 | 199 | 2 | 9 | 376 | 29 | 400 | 8.64e-119 | 351 |
| Msa0112590 | AT5G25620.1 | 45.669 | 381 | 197 | 4 | 9 | 382 | 33 | 410 | 1.47e-117 | 348 |
| Msa0112590 | AT5G25620.2 | 45.669 | 381 | 197 | 4 | 9 | 382 | 33 | 410 | 2.59e-117 | 348 |
| Msa0112590 | AT5G43890.1 | 43.684 | 380 | 205 | 5 | 9 | 381 | 26 | 403 | 1.99e-116 | 345 |
| Msa0112590 | AT1G04180.1 | 44.063 | 379 | 202 | 5 | 9 | 381 | 26 | 400 | 2.08e-115 | 342 |
| Msa0112590 | AT4G28720.1 | 43.307 | 381 | 206 | 6 | 9 | 381 | 26 | 404 | 3.77e-115 | 342 |
| Msa0112590 | AT4G32540.1 | 43.850 | 374 | 197 | 5 | 9 | 376 | 22 | 388 | 5.75e-114 | 338 |
| Msa0112590 | AT4G32540.2 | 44.267 | 375 | 196 | 5 | 9 | 376 | 22 | 390 | 9.26e-114 | 338 |
| Msa0112590 | AT5G11320.1 | 44.504 | 373 | 194 | 4 | 9 | 376 | 18 | 382 | 7.64e-112 | 333 |
| Msa0112590 | AT2G33230.1 | 44.094 | 381 | 202 | 5 | 9 | 381 | 33 | 410 | 1.38e-108 | 325 |
| Msa0112590 | AT5G11320.2 | 44.582 | 323 | 167 | 3 | 9 | 326 | 18 | 333 | 1.35e-95 | 290 |
| Msa0112590 | AT4G13260.2 | 46.454 | 282 | 146 | 1 | 9 | 285 | 29 | 310 | 5.84e-93 | 281 |
| Msa0112590 | AT4G13260.3 | 41.356 | 295 | 166 | 3 | 87 | 376 | 5 | 297 | 4.65e-78 | 243 |
| Msa0112590 | AT1G62560.2 | 27.615 | 239 | 132 | 7 | 5 | 213 | 10 | 237 | 2.57e-16 | 80.5 |
| Msa0112590 | AT1G62560.1 | 27.966 | 236 | 129 | 7 | 8 | 213 | 13 | 237 | 3.31e-16 | 80.5 |
| Msa0112590 | AT1G65860.1 | 27.542 | 236 | 135 | 4 | 5 | 213 | 10 | 236 | 3.59e-16 | 80.1 |
| Msa0112590 | AT1G12160.1 | 24.728 | 368 | 171 | 12 | 8 | 342 | 12 | 306 | 3.35e-14 | 74.3 |
| Msa0112590 | AT1G12140.1 | 30.058 | 173 | 104 | 4 | 49 | 213 | 74 | 237 | 8.94e-14 | 72.8 |
| Msa0112590 | AT1G12140.3 | 30.058 | 173 | 104 | 4 | 49 | 213 | 74 | 237 | 8.94e-14 | 72.8 |
| Msa0112590 | AT5G07800.1 | 27.413 | 259 | 139 | 8 | 5 | 226 | 13 | 259 | 7.21e-13 | 70.1 |
| Msa0112590 | AT1G62540.1 | 28.270 | 237 | 132 | 5 | 5 | 213 | 10 | 236 | 1.65e-12 | 68.9 |
| Msa0112590 | AT5G61290.1 | 27.386 | 241 | 135 | 6 | 1 | 205 | 9 | 245 | 1.70e-12 | 68.9 |
| Msa0112590 | AT1G62540.3 | 28.270 | 237 | 132 | 5 | 5 | 213 | 10 | 236 | 1.91e-12 | 68.9 |
| Msa0112590 | AT1G62540.2 | 28.270 | 237 | 132 | 5 | 5 | 213 | 10 | 236 | 2.05e-12 | 68.9 |
| Msa0112590 | AT1G62620.2 | 22.944 | 231 | 142 | 4 | 8 | 205 | 13 | 240 | 3.80e-12 | 67.8 |
| Msa0112590 | AT1G62620.1 | 22.944 | 231 | 142 | 4 | 8 | 205 | 13 | 240 | 5.83e-12 | 67.4 |
| Msa0112590 | AT1G12200.2 | 32.143 | 140 | 79 | 4 | 80 | 213 | 113 | 242 | 1.18e-11 | 66.2 |
| Msa0112590 | AT1G12200.1 | 32.143 | 140 | 79 | 4 | 80 | 213 | 113 | 242 | 1.52e-11 | 66.2 |
| Msa0112590 | AT1G12140.2 | 27.602 | 221 | 145 | 6 | 49 | 258 | 74 | 290 | 3.23e-11 | 65.1 |
| Msa0112590 | AT1G62570.1 | 26.396 | 197 | 134 | 6 | 75 | 262 | 107 | 301 | 8.63e-11 | 63.5 |
| Msa0112590 | AT5G45180.1 | 26.250 | 240 | 132 | 10 | 5 | 205 | 10 | 243 | 9.57e-11 | 63.5 |
Find 92 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAAGGGGTATGCTGAATT+TGG | 0.142332 | 1_3:+27605018 | Msa0112590:CDS |
| CTCTTCAACCCTTCAATTTC+AGG | 0.149369 | 1_3:-27604578 | None:intergenic |
| TACGGGGATGTCACGAATTA+TGG | 0.154022 | 1_3:+27605112 | Msa0112590:CDS |
| GTTGTTGGGTCTGGGAATTC+TGG | 0.176673 | 1_3:+27604671 | Msa0112590:CDS |
| GTACTTGACCTTCATATAAA+AGG | 0.212639 | 1_3:-27605158 | None:intergenic |
| TCAAGGGGTATGCTGAATTT+GGG | 0.240991 | 1_3:+27605019 | Msa0112590:CDS |
| GTTGTTGGAGCAGGCCCTTC+TGG | 0.254075 | 1_3:+27604167 | Msa0112590:CDS |
| CATGTTCTTGTTGTTGGGTC+TGG | 0.258715 | 1_3:+27604662 | Msa0112590:CDS |
| GATGGTGATGCTTAGTAAAA+TGG | 0.306091 | 1_3:+27605087 | Msa0112590:CDS |
| AATTAAGTCTCGAGAGTTAA+AGG | 0.307124 | 1_3:+27605219 | Msa0112590:CDS |
| TGTATTGGGCCCCATATGTT+TGG | 0.314085 | 1_3:-27607118 | None:intergenic |
| TCTCTTTCGAGGATTATATA+AGG | 0.314818 | 1_3:-27604227 | None:intergenic |
| ATGCTTAGTAAAATGGTTTA+CGG | 0.339605 | 1_3:+27605094 | Msa0112590:CDS |
| GAAGGTGAAGGCTAAGAATA+AGG | 0.345400 | 1_3:+27604481 | Msa0112590:CDS |
| CAAGTTCTAATTCTTGTATT+GGG | 0.347155 | 1_3:-27607132 | None:intergenic |
| GCAAGTTCTAATTCTTGTAT+TGG | 0.352121 | 1_3:-27607133 | None:intergenic |
| AATGAAAGAGTGATAGTTGT+TGG | 0.360593 | 1_3:+27604152 | Msa0112590:CDS |
| AAGTATAACCTCCAAACATA+TGG | 0.364262 | 1_3:+27607107 | Msa0112590:three_prime_UTR |
| GGGAAAGTGATTCATTCAAC+TGG | 0.376100 | 1_3:+27604608 | Msa0112590:CDS |
| GATGAACATGTTCTTGTTGT+TGG | 0.376175 | 1_3:+27604656 | Msa0112590:CDS |
| TGCTTAGTAAAATGGTTTAC+GGG | 0.386664 | 1_3:+27605095 | Msa0112590:CDS |
| ATGATGAAGGTTCTGAGAAA+TGG | 0.387033 | 1_3:+27604459 | Msa0112590:CDS |
| ATCAACCCACAAGTGGCTTA+AGG | 0.388610 | 1_3:+27606368 | Msa0112590:CDS |
| AGCCAAGTTACCCTATTCAT+TGG | 0.388713 | 1_3:+27606825 | Msa0112590:CDS |
| ATGTTCTTGTTGTTGGGTCT+GGG | 0.391709 | 1_3:+27604663 | Msa0112590:CDS |
| AAGGCTAAGAATAAGGATTC+TGG | 0.392445 | 1_3:+27604488 | Msa0112590:CDS |
| CATTCAACTGGGTTTAAGAA+TGG | 0.393718 | 1_3:+27604620 | Msa0112590:CDS |
| CCTTCAATTTCAGGTACAAA+AGG | 0.400011 | 1_3:-27604569 | None:intergenic |
| CTATCAAGGAGAGGTTTCTA+TGG | 0.400558 | 1_3:+27606878 | Msa0112590:CDS |
| ACGGGGATGTCACGAATTAT+GGG | 0.428718 | 1_3:+27605113 | Msa0112590:CDS |
| TATATTGTGTTGGACTATCA+AGG | 0.438069 | 1_3:+27606864 | Msa0112590:CDS |
| ATTCAACTGGGTTTAAGAAT+GGG | 0.438492 | 1_3:+27604621 | Msa0112590:CDS |
| TAAGGATTCTGGTGAGGTTG+AGG | 0.446777 | 1_3:+27604499 | Msa0112590:CDS |
| CTTAAGCATTCTATTTCAGC+TGG | 0.447488 | 1_3:-27606270 | None:intergenic |
| ATGAATAGGGTAACTTGGCT+TGG | 0.450552 | 1_3:-27606822 | None:intergenic |
| AAGGTTCCAACGTCAATAAT+AGG | 0.451735 | 1_3:-27605190 | None:intergenic |
| TTCGAGGATTATATAAGGAA+TGG | 0.455797 | 1_3:-27604222 | None:intergenic |
| TTCCAATGAATAGGGTAACT+TGG | 0.456789 | 1_3:-27606827 | None:intergenic |
| TTCTGGCATGGAAATTGCAT+TGG | 0.469456 | 1_3:+27604688 | Msa0112590:CDS |
| ATGAACATGTTCTTGTTGTT+GGG | 0.471420 | 1_3:+27604657 | Msa0112590:CDS |
| TACTTGACCTTCATATAAAA+GGG | 0.473078 | 1_3:-27605157 | None:intergenic |
| GCAAACCTTAAGCCACTTGT+GGG | 0.480163 | 1_3:-27606373 | None:intergenic |
| ATTGGGCCCCATATGTTTGG+AGG | 0.485159 | 1_3:-27607115 | None:intergenic |
| AGTATAACCTCCAAACATAT+GGG | 0.487162 | 1_3:+27607108 | Msa0112590:three_prime_UTR |
| TGAATAGGGTAACTTGGCTT+GGG | 0.488661 | 1_3:-27606821 | None:intergenic |
| GGATTATATAAGGAATGGAT+TGG | 0.489614 | 1_3:-27604217 | None:intergenic |
| GAATACCATCATCATTCAAA+AGG | 0.492685 | 1_3:-27606799 | None:intergenic |
| TCTGATGAAGTATTTGTCAA+TGG | 0.510851 | 1_3:+27605048 | Msa0112590:CDS |
| CAAGGGGTATGCTGAATTTG+GGG | 0.511286 | 1_3:+27605020 | Msa0112590:CDS |
| TGGGGTTGGTAGGCCTAGTG+AGG | 0.512474 | 1_3:+27605132 | Msa0112590:CDS |
| GCTGAAATAGAATGCTTAAG+TGG | 0.513060 | 1_3:+27606273 | Msa0112590:CDS |
| CTTGCTTCGAACAACGATTG+AGG | 0.514809 | 1_3:-27604735 | None:intergenic |
| CGTTGATTAGATTTCAGTTG+AGG | 0.525399 | 1_3:+27607018 | Msa0112590:three_prime_UTR |
| ATATAAAAGGGACCCTCACT+AGG | 0.526447 | 1_3:-27605145 | None:intergenic |
| CTTCAATTTCAGGTACAAAA+GGG | 0.526666 | 1_3:-27604568 | None:intergenic |
| TGCAAACCTTAAGCCACTTG+TGG | 0.528385 | 1_3:-27606374 | None:intergenic |
| CTCAATCGTTGTTCGAAGCA+AGG | 0.531935 | 1_3:+27604736 | Msa0112590:CDS |
| GGAATGTATGATGGAAAAGA+AGG | 0.532095 | 1_3:-27604347 | None:intergenic |
| AAGTTACCCTATTCATTGGA+AGG | 0.536623 | 1_3:+27606829 | Msa0112590:CDS |
| GTGGGTTGATCTCTTGAAGC+CGG | 0.536695 | 1_3:-27606355 | None:intergenic |
| GAGAATGCAAAGTATGATGA+AGG | 0.540824 | 1_3:+27604446 | Msa0112590:CDS |
| GGTGAGGTTGAGGAATATGA+AGG | 0.542585 | 1_3:+27604509 | Msa0112590:CDS |
| AGGTTGAGGAATATGAAGGA+AGG | 0.551335 | 1_3:+27604513 | Msa0112590:CDS |
| ATGTATGATGGAAAAGAAGG+TGG | 0.552215 | 1_3:-27604344 | None:intergenic |
| GATGGAAAAGAAGGTGGGAA+TGG | 0.556044 | 1_3:-27604338 | None:intergenic |
| GAAAATAAAGATCAAAGGAG+AGG | 0.566865 | 1_3:+27607069 | Msa0112590:three_prime_UTR |
| AGAGTGATAGTTGTTGGAGC+AGG | 0.568437 | 1_3:+27604158 | Msa0112590:CDS |
| TTTATGAAAATAAAGATCAA+AGG | 0.573792 | 1_3:+27607064 | Msa0112590:three_prime_UTR |
| TCACGAATTATGGGGTTGGT+AGG | 0.576228 | 1_3:+27605122 | Msa0112590:CDS |
| GTATTTGTCAATGGAGATGG+TGG | 0.579490 | 1_3:+27605057 | Msa0112590:CDS |
| TGGGTCTGGGAATTCTGGCA+TGG | 0.586713 | 1_3:+27604676 | Msa0112590:CDS |
| CGGGGATGTCACGAATTATG+GGG | 0.588744 | 1_3:+27605114 | Msa0112590:CDS |
| GCTGCTACTGACAGACCAGA+AGG | 0.588847 | 1_3:-27604182 | None:intergenic |
| GGGGTTGGTAGGCCTAGTGA+GGG | 0.589928 | 1_3:+27605133 | Msa0112590:CDS |
| GGAAAGTGATTCATTCAACT+GGG | 0.594965 | 1_3:+27604609 | Msa0112590:CDS |
| TGTATGATGGAAAAGAAGGT+GGG | 0.596307 | 1_3:-27604343 | None:intergenic |
| AGTTACCCTATTCATTGGAA+GGG | 0.596925 | 1_3:+27606830 | Msa0112590:CDS |
| GAAGTATTTGTCAATGGAGA+TGG | 0.597497 | 1_3:+27605054 | Msa0112590:CDS |
| GAAGGTGGGAATGGTTTGTG+AGG | 0.606122 | 1_3:-27604329 | None:intergenic |
| TGTGTTGGACTATCAAGGAG+AGG | 0.616154 | 1_3:+27606869 | Msa0112590:CDS |
| GGAGATGGTGGATTTAGTGA+TGG | 0.618594 | 1_3:+27605069 | Msa0112590:CDS |
| TTCTGAGAAATGGAAGGTGA+AGG | 0.623363 | 1_3:+27604469 | Msa0112590:CDS |
| GATGTCACGAATTATGGGGT+TGG | 0.629113 | 1_3:+27605118 | Msa0112590:CDS |
| TCAACTGTTCTGTGATACAG+AGG | 0.635504 | 1_3:-27604425 | None:intergenic |
| GCATTGGATCTTATCAACCA+TGG | 0.635858 | 1_3:+27604704 | Msa0112590:CDS |
| CTGCTACTGACAGACCAGAA+GGG | 0.640915 | 1_3:-27604181 | None:intergenic |
| AAGTATCCTATTATTGACGT+TGG | 0.642218 | 1_3:+27605184 | Msa0112590:CDS |
| TCAAGAGATCAACCCACAAG+TGG | 0.648193 | 1_3:+27606361 | Msa0112590:CDS |
| GCTTAGTAAAATGGTTTACG+GGG | 0.650434 | 1_3:+27605096 | Msa0112590:CDS |
| TAAGAATAAGGATTCTGGTG+AGG | 0.661843 | 1_3:+27604493 | Msa0112590:CDS |
| GTATAACCTCCAAACATATG+GGG | 0.683885 | 1_3:+27607109 | Msa0112590:three_prime_UTR |
| TGAAGGTTCTGAGAAATGGA+AGG | 0.688803 | 1_3:+27604463 | Msa0112590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAATAAATATATAATTGA+CGG | + | chr1_3:27604826-27604845 | Msa0112590:intron | 10.0% |
| !! | AAAATAAATAATAAAAATGC+AGG | + | chr1_3:27604985-27605004 | Msa0112590:intron | 10.0% |
| !!! | TTGATTTTAATGATAATTTA+TGG | - | chr1_3:27605339-27605358 | None:intergenic | 10.0% |
| !!! | TTTATTTTTCATATCATTAA+AGG | + | chr1_3:27605860-27605879 | Msa0112590:intron | 10.0% |
| !! | AAAAAAAAAAAAACATGATA+AGG | - | chr1_3:27606605-27606624 | None:intergenic | 10.0% |
| !!! | TAAACTAATTAATTATCTTT+TGG | + | chr1_3:27606762-27606781 | Msa0112590:intron | 10.0% |
| !!! | TATTGTAAAAACTTTTCTTT+AGG | - | chr1_3:27604371-27604390 | None:intergenic | 15.0% |
| !! | AGAATAAATATATAATTGAC+GGG | + | chr1_3:27604827-27604846 | Msa0112590:intron | 15.0% |
| !! | ATGTATTCAAGTATAATTTA+AGG | - | chr1_3:27605371-27605390 | None:intergenic | 15.0% |
| !! | AAAATAAAGGATTAAATTGA+TGG | + | chr1_3:27605412-27605431 | Msa0112590:intron | 15.0% |
| !!! | TATTTGACTTTAATAGTTTA+AGG | + | chr1_3:27605459-27605478 | Msa0112590:intron | 15.0% |
| !! | AACAAATTTATTTAAGTGAA+AGG | + | chr1_3:27605995-27606014 | Msa0112590:intron | 15.0% |
| !!! | ATATCATTTTACTAAAAAGA+TGG | + | chr1_3:27606042-27606061 | Msa0112590:intron | 15.0% |
| !!! | CAAAAAAGAATAGTTTTTTT+AGG | + | chr1_3:27606629-27606648 | Msa0112590:intron | 15.0% |
| !!! | TAATTAATTATCTTTTGGTA+GGG | + | chr1_3:27606767-27606786 | Msa0112590:intron | 15.0% |
| !! | TTTATGAAAATAAAGATCAA+AGG | + | chr1_3:27607064-27607083 | Msa0112590:three_prime_UTR | 15.0% |
| !! | ATTAAAAAGTGAATAAATTG+TGG | - | chr1_3:27607160-27607179 | None:intergenic | 15.0% |
| !!! | CATATATCAATTTATTTTGA+CGG | - | chr1_3:27607195-27607214 | None:intergenic | 15.0% |
| !! | TATACTTGAATACATCAATT+TGG | + | chr1_3:27605376-27605395 | Msa0112590:intron | 20.0% |
| !! | TCCATAAACAAGTAAAATAA+AGG | + | chr1_3:27605399-27605418 | Msa0112590:intron | 20.0% |
| !!! | TCCTTTATTTTACTTGTTTA+TGG | - | chr1_3:27605403-27605422 | None:intergenic | 20.0% |
| !!! | TTCAGAAGATTTTTTTTTGA+GGG | - | chr1_3:27605609-27605628 | None:intergenic | 20.0% |
| !!! | TTTCAGAAGATTTTTTTTTG+AGG | - | chr1_3:27605610-27605629 | None:intergenic | 20.0% |
| !! | AGAATGACATATATTTCAAT+AGG | - | chr1_3:27605722-27605741 | None:intergenic | 20.0% |
| !! | ATTGAAATATATGTCATTCT+AGG | + | chr1_3:27605722-27605741 | Msa0112590:intron | 20.0% |
| !! | TACCTAAAATAACATTTAGA+TGG | + | chr1_3:27605956-27605975 | Msa0112590:intron | 20.0% |
| !! | ACCTAAAATAACATTTAGAT+GGG | + | chr1_3:27605957-27605976 | Msa0112590:intron | 20.0% |
| !! | TAATGTATGTTACATGAAAA+TGG | + | chr1_3:27606677-27606696 | Msa0112590:intron | 20.0% |
| !! | AATGTATGTTACATGAAAAT+GGG | + | chr1_3:27606678-27606697 | Msa0112590:intron | 20.0% |
| !! | AATATACGTCAAAGTATATA+TGG | - | chr1_3:27606730-27606749 | None:intergenic | 20.0% |
| !!! | CTAATTAATTATCTTTTGGT+AGG | + | chr1_3:27606766-27606785 | Msa0112590:intron | 20.0% |
| !! | AAAAATGGTTTATATTGTGT+TGG | + | chr1_3:27606854-27606873 | Msa0112590:CDS | 20.0% |
| !!! | ACACATTTTAATCACATAAT+TGG | - | chr1_3:27607233-27607252 | None:intergenic | 20.0% |
| ! | ACAAAAAAGAGAAGAAAGAA+TGG | + | chr1_3:27604121-27604140 | Msa0112590:exon | 25.0% |
| !!! | AAAATTGTTTTGCATCACTA+TGG | + | chr1_3:27604249-27604268 | Msa0112590:CDS | 25.0% |
| !!! | TTTTCTTTAGGAATGTATGA+TGG | - | chr1_3:27604359-27604378 | None:intergenic | 25.0% |
| ! | ATGCTTAGTAAAATGGTTTA+CGG | + | chr1_3:27605094-27605113 | Msa0112590:CDS | 25.0% |
| ! | TACTTGACCTTCATATAAAA+GGG | - | chr1_3:27605160-27605179 | None:intergenic | 25.0% |
| !! | TTTTATATGAAGGTCAAGTA+CGG | + | chr1_3:27605160-27605179 | Msa0112590:CDS | 25.0% |
| !! | AACCATATTAGGCAAATTTT+AGG | - | chr1_3:27605307-27605326 | None:intergenic | 25.0% |
| !!! | ATCTTCTGTGTCTTTTTTTA+AGG | + | chr1_3:27605651-27605670 | Msa0112590:intron | 25.0% |
| !! | AAATATATGTCATTCTAGGA+AGG | + | chr1_3:27605726-27605745 | Msa0112590:intron | 25.0% |
| ! | CCTAAAATAACATTTAGATG+GGG | + | chr1_3:27605958-27605977 | Msa0112590:intron | 25.0% |
| ! | AGGTTATCTAACTATAAACA+AGG | + | chr1_3:27606015-27606034 | Msa0112590:intron | 25.0% |
| !! | GAAAAGTGCAAATATAATTG+TGG | + | chr1_3:27606194-27606213 | Msa0112590:intron | 25.0% |
| ! | ATTGTGTTATGTGTTATGTT+AGG | + | chr1_3:27606242-27606261 | Msa0112590:intron | 25.0% |
| !! | ATATATGGTCACATTTCTTT+TGG | - | chr1_3:27606715-27606734 | None:intergenic | 25.0% |
| !! | ACTTCATAGATTTTTCATGA+TGG | - | chr1_3:27606945-27606964 | None:intergenic | 25.0% |
| !! | CAAGTTCTAATTCTTGTATT+GGG | - | chr1_3:27607135-27607154 | None:intergenic | 25.0% |
| AATGAAAGAGTGATAGTTGT+TGG | + | chr1_3:27604152-27604171 | Msa0112590:CDS | 30.0% | |
| GGATTATATAAGGAATGGAT+TGG | - | chr1_3:27604220-27604239 | None:intergenic | 30.0% | |
| TTCGAGGATTATATAAGGAA+TGG | - | chr1_3:27604225-27604244 | None:intergenic | 30.0% | |
| TCTCTTTCGAGGATTATATA+AGG | - | chr1_3:27604230-27604249 | None:intergenic | 30.0% | |
| ! | CAAAACAATTTTCTCTTTCG+AGG | - | chr1_3:27604241-27604260 | None:intergenic | 30.0% |
| ! | CTTCAATTTCAGGTACAAAA+GGG | - | chr1_3:27604571-27604590 | None:intergenic | 30.0% |
| ! | CTTTTGTACCTGAAATTGAA+GGG | + | chr1_3:27604570-27604589 | Msa0112590:CDS | 30.0% |
| ATTCAACTGGGTTTAAGAAT+GGG | + | chr1_3:27604621-27604640 | Msa0112590:CDS | 30.0% | |
| !! | ATGAACATGTTCTTGTTGTT+GGG | + | chr1_3:27604657-27604676 | Msa0112590:CDS | 30.0% |
| ! | TCTGATGAAGTATTTGTCAA+TGG | + | chr1_3:27605048-27605067 | Msa0112590:CDS | 30.0% |
| TGCTTAGTAAAATGGTTTAC+GGG | + | chr1_3:27605095-27605114 | Msa0112590:CDS | 30.0% | |
| GTACTTGACCTTCATATAAA+AGG | - | chr1_3:27605161-27605180 | None:intergenic | 30.0% | |
| AAGTATCCTATTATTGACGT+TGG | + | chr1_3:27605184-27605203 | Msa0112590:CDS | 30.0% | |
| ! | TCGAGACTTAATTTTGTGAA+AGG | - | chr1_3:27605212-27605231 | None:intergenic | 30.0% |
| AATTAAGTCTCGAGAGTTAA+AGG | + | chr1_3:27605219-27605238 | Msa0112590:CDS | 30.0% | |
| ACGTTAGAGATAATTGACAT+TGG | + | chr1_3:27605243-27605262 | Msa0112590:intron | 30.0% | |
| ! | ATAATTGACATTGGTTGCTT+TGG | + | chr1_3:27605252-27605271 | Msa0112590:intron | 30.0% |
| CACCTAAAATTTGCCTAATA+TGG | + | chr1_3:27605302-27605321 | Msa0112590:intron | 30.0% | |
| ! | GGAAAGTTTGAAACCATATT+AGG | - | chr1_3:27605318-27605337 | None:intergenic | 30.0% |
| TAATAGTTTAAGGACCAAAG+TGG | + | chr1_3:27605469-27605488 | Msa0112590:intron | 30.0% | |
| !!! | CCCCATCTAAATGTTATTTT+AGG | - | chr1_3:27605961-27605980 | None:intergenic | 30.0% |
| AAGAATGTCCTCTTCAAAAA+TGG | + | chr1_3:27606297-27606316 | Msa0112590:CDS | 30.0% | |
| GAATAGATCAATATCAGCAA+CGG | + | chr1_3:27606495-27606514 | Msa0112590:intron | 30.0% | |
| ! | GATTACCTTTTGAATGATGA+TGG | + | chr1_3:27606794-27606813 | Msa0112590:CDS | 30.0% |
| GAATACCATCATCATTCAAA+AGG | - | chr1_3:27606802-27606821 | None:intergenic | 30.0% | |
| ! | TTTTTCCCTTCCAATGAATA+GGG | - | chr1_3:27606838-27606857 | None:intergenic | 30.0% |
| !!! | TTTTTTCCCTTCCAATGAAT+AGG | - | chr1_3:27606839-27606858 | None:intergenic | 30.0% |
| ATTCATTGGAAGGGAAAAAA+TGG | + | chr1_3:27606839-27606858 | Msa0112590:CDS | 30.0% | |
| TATATTGTGTTGGACTATCA+AGG | + | chr1_3:27606864-27606883 | Msa0112590:CDS | 30.0% | |
| GAAAATAAAGATCAAAGGAG+AGG | + | chr1_3:27607069-27607088 | Msa0112590:three_prime_UTR | 30.0% | |
| AAGTATAACCTCCAAACATA+TGG | + | chr1_3:27607107-27607126 | Msa0112590:three_prime_UTR | 30.0% | |
| AGTATAACCTCCAAACATAT+GGG | + | chr1_3:27607108-27607127 | Msa0112590:three_prime_UTR | 30.0% | |
| ! | GCAAGTTCTAATTCTTGTAT+TGG | - | chr1_3:27607136-27607155 | None:intergenic | 30.0% |
| !!! | GCTCGCAAAATTGTTTTTTG+AGG | - | chr1_3:27604307-27604326 | None:intergenic | 35.0% |
| ! | TGTATGATGGAAAAGAAGGT+GGG | - | chr1_3:27604346-27604365 | None:intergenic | 35.0% |
| ! | ATGTATGATGGAAAAGAAGG+TGG | - | chr1_3:27604347-27604366 | None:intergenic | 35.0% |
| ! | GGAATGTATGATGGAAAAGA+AGG | - | chr1_3:27604350-27604369 | None:intergenic | 35.0% |
| GAGAATGCAAAGTATGATGA+AGG | + | chr1_3:27604446-27604465 | Msa0112590:CDS | 35.0% | |
| !! | ATGATGAAGGTTCTGAGAAA+TGG | + | chr1_3:27604459-27604478 | Msa0112590:CDS | 35.0% |
| AAGGCTAAGAATAAGGATTC+TGG | + | chr1_3:27604488-27604507 | Msa0112590:CDS | 35.0% | |
| TAAGAATAAGGATTCTGGTG+AGG | + | chr1_3:27604493-27604512 | Msa0112590:CDS | 35.0% | |
| ! | GGAATATGAAGGAAGGTTTT+TGG | + | chr1_3:27604520-27604539 | Msa0112590:CDS | 35.0% |
| ! | CCTTCAATTTCAGGTACAAA+AGG | - | chr1_3:27604572-27604591 | None:intergenic | 35.0% |
| ! | CCTTTTGTACCTGAAATTGA+AGG | + | chr1_3:27604569-27604588 | Msa0112590:CDS | 35.0% |
| ! | AAGGGTTGAAGAGTTTTACT+GGG | + | chr1_3:27604588-27604607 | Msa0112590:CDS | 35.0% |
| GGAAAGTGATTCATTCAACT+GGG | + | chr1_3:27604609-27604628 | Msa0112590:CDS | 35.0% | |
| CATTCAACTGGGTTTAAGAA+TGG | + | chr1_3:27604620-27604639 | Msa0112590:CDS | 35.0% | |
| ! | GATGAACATGTTCTTGTTGT+TGG | + | chr1_3:27604656-27604675 | Msa0112590:CDS | 35.0% |
| ! | GTTAGCTGTTGATTATACGT+AGG | + | chr1_3:27604901-27604920 | Msa0112590:intron | 35.0% |
| ! | GAAGTATTTGTCAATGGAGA+TGG | + | chr1_3:27605054-27605073 | Msa0112590:CDS | 35.0% |
| ! | GATGGTGATGCTTAGTAAAA+TGG | + | chr1_3:27605087-27605106 | Msa0112590:CDS | 35.0% |
| GCTTAGTAAAATGGTTTACG+GGG | + | chr1_3:27605096-27605115 | Msa0112590:CDS | 35.0% | |
| AAGGTTCCAACGTCAATAAT+AGG | - | chr1_3:27605193-27605212 | None:intergenic | 35.0% | |
| !! | TTGTTTTGTGACATGACGAA+TGG | + | chr1_3:27606217-27606236 | Msa0112590:intron | 35.0% |
| ! | TGTTTTGTGACATGACGAAT+GGG | + | chr1_3:27606218-27606237 | Msa0112590:intron | 35.0% |
| CTTAAGCATTCTATTTCAGC+TGG | - | chr1_3:27606273-27606292 | None:intergenic | 35.0% | |
| GCTGAAATAGAATGCTTAAG+TGG | + | chr1_3:27606273-27606292 | Msa0112590:CDS | 35.0% | |
| !! | GCAATTGACCATTTTTGAAG+AGG | - | chr1_3:27606308-27606327 | None:intergenic | 35.0% |
| ! | GACTCTATTATTTTCTGCAC+CGG | + | chr1_3:27606336-27606355 | Msa0112590:CDS | 35.0% |
| TTCCAATGAATAGGGTAACT+TGG | - | chr1_3:27606830-27606849 | None:intergenic | 35.0% | |
| AAGTTACCCTATTCATTGGA+AGG | + | chr1_3:27606829-27606848 | Msa0112590:CDS | 35.0% | |
| AGTTACCCTATTCATTGGAA+GGG | + | chr1_3:27606830-27606849 | Msa0112590:CDS | 35.0% | |
| ! | CGTTGATTAGATTTCAGTTG+AGG | + | chr1_3:27607018-27607037 | Msa0112590:three_prime_UTR | 35.0% |
| GTATAACCTCCAAACATATG+GGG | + | chr1_3:27607109-27607128 | Msa0112590:three_prime_UTR | 35.0% | |
| TCAACTGTTCTGTGATACAG+AGG | - | chr1_3:27604428-27604447 | None:intergenic | 40.0% | |
| !! | TGAAGGTTCTGAGAAATGGA+AGG | + | chr1_3:27604463-27604482 | Msa0112590:CDS | 40.0% |
| ! | TTCTGAGAAATGGAAGGTGA+AGG | + | chr1_3:27604469-27604488 | Msa0112590:CDS | 40.0% |
| GAAGGTGAAGGCTAAGAATA+AGG | + | chr1_3:27604481-27604500 | Msa0112590:CDS | 40.0% | |
| AGGTTGAGGAATATGAAGGA+AGG | + | chr1_3:27604513-27604532 | Msa0112590:CDS | 40.0% | |
| !!! | TGAAGGAAGGTTTTTGGTTG+TGG | + | chr1_3:27604526-27604545 | Msa0112590:CDS | 40.0% |
| CTCTTCAACCCTTCAATTTC+AGG | - | chr1_3:27604581-27604600 | None:intergenic | 40.0% | |
| ! | GAAGGGTTGAAGAGTTTTAC+TGG | + | chr1_3:27604587-27604606 | Msa0112590:CDS | 40.0% |
| GGGAAAGTGATTCATTCAAC+TGG | + | chr1_3:27604608-27604627 | Msa0112590:CDS | 40.0% | |
| !! | ATGTTCTTGTTGTTGGGTCT+GGG | + | chr1_3:27604663-27604682 | Msa0112590:CDS | 40.0% |
| TTCTGGCATGGAAATTGCAT+TGG | + | chr1_3:27604688-27604707 | Msa0112590:CDS | 40.0% | |
| GCATTGGATCTTATCAACCA+TGG | + | chr1_3:27604704-27604723 | Msa0112590:CDS | 40.0% | |
| TAATTGACGGGATGAATGAG+TGG | + | chr1_3:27604839-27604858 | Msa0112590:intron | 40.0% | |
| ! | TGCAGGTTCACATTTTGTCA+AGG | + | chr1_3:27605002-27605021 | Msa0112590:intron | 40.0% |
| ! | GCAGGTTCACATTTTGTCAA+GGG | + | chr1_3:27605003-27605022 | Msa0112590:intron | 40.0% |
| ! | CAGGTTCACATTTTGTCAAG+GGG | + | chr1_3:27605004-27605023 | Msa0112590:intron | 40.0% |
| ! | TCAAGGGGTATGCTGAATTT+GGG | + | chr1_3:27605019-27605038 | Msa0112590:CDS | 40.0% |
| GTATTTGTCAATGGAGATGG+TGG | + | chr1_3:27605057-27605076 | Msa0112590:CDS | 40.0% | |
| ATATAAAAGGGACCCTCACT+AGG | - | chr1_3:27605148-27605167 | None:intergenic | 40.0% | |
| ! | TGAGGGTCCCTTTTATATGA+AGG | + | chr1_3:27605150-27605169 | Msa0112590:CDS | 40.0% |
| ! | TCAAGCGAGTTACTTTGCTT+GGG | - | chr1_3:27606092-27606111 | None:intergenic | 40.0% |
| ! | TTCAAGCGAGTTACTTTGCT+TGG | - | chr1_3:27606093-27606112 | None:intergenic | 40.0% |
| TGAATAGGGTAACTTGGCTT+GGG | - | chr1_3:27606824-27606843 | None:intergenic | 40.0% | |
| ATGAATAGGGTAACTTGGCT+TGG | - | chr1_3:27606825-27606844 | None:intergenic | 40.0% | |
| AGCCAAGTTACCCTATTCAT+TGG | + | chr1_3:27606825-27606844 | Msa0112590:CDS | 40.0% | |
| CTATCAAGGAGAGGTTTCTA+TGG | + | chr1_3:27606878-27606897 | Msa0112590:CDS | 40.0% | |
| AGAGTGATAGTTGTTGGAGC+AGG | + | chr1_3:27604158-27604177 | Msa0112590:CDS | 45.0% | |
| GATGGAAAAGAAGGTGGGAA+TGG | - | chr1_3:27604341-27604360 | None:intergenic | 45.0% | |
| TAAGGATTCTGGTGAGGTTG+AGG | + | chr1_3:27604499-27604518 | Msa0112590:CDS | 45.0% | |
| GGTGAGGTTGAGGAATATGA+AGG | + | chr1_3:27604509-27604528 | Msa0112590:CDS | 45.0% | |
| !!! | AGGTTTTTGGTTGTGGCTAG+TGG | + | chr1_3:27604533-27604552 | Msa0112590:CDS | 45.0% |
| !! | CATGTTCTTGTTGTTGGGTC+TGG | + | chr1_3:27604662-27604681 | Msa0112590:CDS | 45.0% |
| !! | CGATTGAGGTTTTAGCACCA+TGG | - | chr1_3:27604724-27604743 | None:intergenic | 45.0% |
| CTTGCTTCGAACAACGATTG+AGG | - | chr1_3:27604738-27604757 | None:intergenic | 45.0% | |
| CTCAATCGTTGTTCGAAGCA+AGG | + | chr1_3:27604736-27604755 | Msa0112590:CDS | 45.0% | |
| ! | GTCAAGGGGTATGCTGAATT+TGG | + | chr1_3:27605018-27605037 | Msa0112590:CDS | 45.0% |
| ! | CAAGGGGTATGCTGAATTTG+GGG | + | chr1_3:27605020-27605039 | Msa0112590:CDS | 45.0% |
| !! | GGAGATGGTGGATTTAGTGA+TGG | + | chr1_3:27605069-27605088 | Msa0112590:CDS | 45.0% |
| TACGGGGATGTCACGAATTA+TGG | + | chr1_3:27605112-27605131 | Msa0112590:CDS | 45.0% | |
| ACGGGGATGTCACGAATTAT+GGG | + | chr1_3:27605113-27605132 | Msa0112590:CDS | 45.0% | |
| GATGTCACGAATTATGGGGT+TGG | + | chr1_3:27605118-27605137 | Msa0112590:CDS | 45.0% | |
| ! | TCACGAATTATGGGGTTGGT+AGG | + | chr1_3:27605122-27605141 | Msa0112590:CDS | 45.0% |
| TTAAGGACCAAAGTGGTGAG+AGG | + | chr1_3:27605476-27605495 | Msa0112590:intron | 45.0% | |
| TAAGGACCAAAGTGGTGAGA+GGG | + | chr1_3:27605477-27605496 | Msa0112590:intron | 45.0% | |
| !! | GGTGAGAGGGTATTGGTTTA+AGG | + | chr1_3:27605490-27605509 | Msa0112590:intron | 45.0% |
| ! | CAAGCGAGTTACTTTGCTTG+GGG | - | chr1_3:27606091-27606110 | None:intergenic | 45.0% |
| TCAAGAGATCAACCCACAAG+TGG | + | chr1_3:27606361-27606380 | Msa0112590:CDS | 45.0% | |
| ATCAACCCACAAGTGGCTTA+AGG | + | chr1_3:27606368-27606387 | Msa0112590:CDS | 45.0% | |
| GCAAACCTTAAGCCACTTGT+GGG | - | chr1_3:27606376-27606395 | None:intergenic | 45.0% | |
| TGCAAACCTTAAGCCACTTG+TGG | - | chr1_3:27606377-27606396 | None:intergenic | 45.0% | |
| TGTGTTGGACTATCAAGGAG+AGG | + | chr1_3:27606869-27606888 | Msa0112590:CDS | 45.0% | |
| TGTATTGGGCCCCATATGTT+TGG | - | chr1_3:27607121-27607140 | None:intergenic | 45.0% | |
| CTGCTACTGACAGACCAGAA+GGG | - | chr1_3:27604184-27604203 | None:intergenic | 50.0% | |
| ! | GAAGGTGGGAATGGTTTGTG+AGG | - | chr1_3:27604332-27604351 | None:intergenic | 50.0% |
| GTTGTTGGGTCTGGGAATTC+TGG | + | chr1_3:27604671-27604690 | Msa0112590:CDS | 50.0% | |
| CGGGGATGTCACGAATTATG+GGG | + | chr1_3:27605114-27605133 | Msa0112590:CDS | 50.0% | |
| CCAATACCCTCTCACCACTT+TGG | - | chr1_3:27605486-27605505 | None:intergenic | 50.0% | |
| ! | CCAAAGTGGTGAGAGGGTAT+TGG | + | chr1_3:27605483-27605502 | Msa0112590:intron | 50.0% |
| !! | GTGGGTTGATCTCTTGAAGC+CGG | - | chr1_3:27606358-27606377 | None:intergenic | 50.0% |
| ATTGGGCCCCATATGTTTGG+AGG | - | chr1_3:27607118-27607137 | None:intergenic | 50.0% | |
| GCTGCTACTGACAGACCAGA+AGG | - | chr1_3:27604185-27604204 | None:intergenic | 55.0% | |
| TGGGTCTGGGAATTCTGGCA+TGG | + | chr1_3:27604676-27604695 | Msa0112590:CDS | 55.0% | |
| GTTGTTGGAGCAGGCCCTTC+TGG | + | chr1_3:27604167-27604186 | Msa0112590:CDS | 60.0% | |
| !! | TGGGGTTGGTAGGCCTAGTG+AGG | + | chr1_3:27605132-27605151 | Msa0112590:CDS | 60.0% |
| !! | GGGGTTGGTAGGCCTAGTGA+GGG | + | chr1_3:27605133-27605152 | Msa0112590:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 27604072 | 27607274 | 27604072 | ID=Msa0112590;Name=Msa0112590 |
| chr1_3 | mRNA | 27604072 | 27607274 | 27604072 | ID=Msa0112590-mRNA-1;Parent=Msa0112590;Name=Msa0112590-mRNA-1;_AED=0.08;_eAED=0.08;_QI=68|1|1|1|0.75|0.6|5|281|383 |
| chr1_3 | exon | 27604072 | 27604757 | 27604072 | ID=Msa0112590-mRNA-1:exon:9195;Parent=Msa0112590-mRNA-1 |
| chr1_3 | exon | 27605007 | 27605240 | 27605007 | ID=Msa0112590-mRNA-1:exon:9196;Parent=Msa0112590-mRNA-1 |
| chr1_3 | exon | 27606264 | 27606389 | 27606264 | ID=Msa0112590-mRNA-1:exon:9197;Parent=Msa0112590-mRNA-1 |
| chr1_3 | exon | 27606788 | 27607141 | 27606788 | ID=Msa0112590-mRNA-1:exon:9198;Parent=Msa0112590-mRNA-1 |
| chr1_3 | exon | 27607174 | 27607274 | 27607174 | ID=Msa0112590-mRNA-1:exon:9199;Parent=Msa0112590-mRNA-1 |
| chr1_3 | five_prime_UTR | 27604072 | 27604139 | 27604072 | ID=Msa0112590-mRNA-1:five_prime_utr;Parent=Msa0112590-mRNA-1 |
| chr1_3 | CDS | 27604140 | 27604757 | 27604140 | ID=Msa0112590-mRNA-1:cds;Parent=Msa0112590-mRNA-1 |
| chr1_3 | CDS | 27605007 | 27605240 | 27605007 | ID=Msa0112590-mRNA-1:cds;Parent=Msa0112590-mRNA-1 |
| chr1_3 | CDS | 27606264 | 27606389 | 27606264 | ID=Msa0112590-mRNA-1:cds;Parent=Msa0112590-mRNA-1 |
| chr1_3 | CDS | 27606788 | 27606961 | 27606788 | ID=Msa0112590-mRNA-1:cds;Parent=Msa0112590-mRNA-1 |
| chr1_3 | three_prime_UTR | 27606962 | 27607141 | 27606962 | ID=Msa0112590-mRNA-1:three_prime_utr;Parent=Msa0112590-mRNA-1 |
| chr1_3 | three_prime_UTR | 27607174 | 27607274 | 27607174 | ID=Msa0112590-mRNA-1:three_prime_utr;Parent=Msa0112590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
