Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650930 | KEH30815.1 | 97.768 | 224 | 5 | 0 | 1 | 224 | 1 | 224 | 1.14e-153 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650930 | sp|Q5ZJN0|ASND1_CHICK | 37.079 | 178 | 76 | 4 | 38 | 215 | 23 | 164 | 1.94e-24 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650930 | A0A072UY80 | 97.768 | 224 | 5 | 0 | 1 | 224 | 1 | 224 | 5.43e-154 | 448 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029240 | Msa0650930 | 0.810976 | 8.818468e-51 | -8.615850e-47 |
| Msa0054480 | Msa0650930 | 0.830842 | 2.338217e-55 | -8.615850e-47 |
| Msa0607910 | Msa0650930 | 0.805883 | 1.076710e-49 | -8.615850e-47 |
| Msa0610400 | Msa0650930 | 0.879055 | 1.702205e-69 | -8.615850e-47 |
| Msa0610430 | Msa0650930 | 0.805177 | 1.514280e-49 | -8.615850e-47 |
| Msa0625720 | Msa0650930 | 0.813158 | 2.948544e-51 | -8.615850e-47 |
| Msa0650930 | Msa0663390 | 0.805056 | 1.604871e-49 | -8.615850e-47 |
| Msa0650930 | Msa0692040 | -0.816608 | 5.065180e-52 | -8.615850e-47 |
| Msa0650930 | Msa0692830 | 0.857557 | 1.505469e-62 | -8.615850e-47 |
| Msa0650930 | Msa0692950 | 0.868976 | 4.372751e-66 | -8.615850e-47 |
| Msa0650930 | Msa0711780 | 0.814749 | 1.314532e-51 | -8.615850e-47 |
| Msa0650930 | Msa0715700 | 0.825558 | 4.391682e-54 | -8.615850e-47 |
| Msa0650930 | Msa0794670 | 0.802036 | 6.786219e-49 | -8.615850e-47 |
| Msa0650930 | Msa0849030 | 0.805186 | 1.507250e-49 | -8.615850e-47 |
| Msa0650930 | Msa0933100 | 0.808608 | 2.849480e-50 | -8.615850e-47 |
| Msa0650930 | Msa1208880 | 0.808607 | 2.850357e-50 | -8.615850e-47 |
| Msa0650930 | Msa1245930 | 0.812328 | 4.481149e-51 | -8.615850e-47 |
| Msa0650930 | Msa1259060 | 0.805935 | 1.049935e-49 | -8.615850e-47 |
| Msa0650930 | Msa1400580 | 0.810458 | 1.141525e-50 | -8.615850e-47 |
| Msa0650930 | Msa1411750 | 0.800915 | 1.151884e-48 | -8.615850e-47 |
| Msa0650930 | Msa1443850 | 0.802577 | 5.252745e-49 | -8.615850e-47 |
| Msa0650930 | Msa1454480 | 0.813027 | 3.150376e-51 | -8.615850e-47 |
| Msa0650930 | Msa1466540 | 0.801574 | 8.443160e-49 | -8.615850e-47 |
| Msa0127020 | Msa0650930 | 0.810188 | 1.304905e-50 | -8.615850e-47 |
| Msa0169280 | Msa0650930 | 0.813726 | 2.211613e-51 | -8.615850e-47 |
| Msa0206010 | Msa0650930 | 0.810183 | 1.308035e-50 | -8.615850e-47 |
| Msa0212930 | Msa0650930 | 0.803330 | 3.669652e-49 | -8.615850e-47 |
| Msa0481530 | Msa0650930 | 0.805594 | 1.238008e-49 | -8.615850e-47 |
| Msa0241470 | Msa0650930 | 0.816014 | 6.877970e-52 | -8.615850e-47 |
| Msa0253200 | Msa0650930 | 0.828362 | 9.376531e-55 | -8.615850e-47 |
| Msa0279220 | Msa0650930 | 0.821849 | 3.243631e-53 | -8.615850e-47 |
| Msa0287410 | Msa0650930 | 0.804133 | 2.500934e-49 | -8.615850e-47 |
| Msa0292030 | Msa0650930 | 0.830838 | 2.343247e-55 | -8.615850e-47 |
| Msa0326110 | Msa0650930 | 0.803208 | 3.890232e-49 | -8.615850e-47 |
| Msa0522070 | Msa0650930 | 0.807716 | 4.412875e-50 | -8.615850e-47 |
| Msa0529890 | Msa0650930 | 0.813571 | 2.392570e-51 | -8.615850e-47 |
| Msa0531180 | Msa0650930 | 0.803302 | 3.719951e-49 | -8.615850e-47 |
| Msa0585560 | Msa0650930 | 0.814544 | 1.459298e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650930 | MtrunA17_Chr4g0043241 | 97.768 | 224 | 5 | 0 | 1 | 224 | 1 | 224 | 8.97e-157 | 449 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650930 | AT2G03667.2 | 50.467 | 214 | 88 | 2 | 1 | 211 | 1 | 199 | 2.27e-58 | 194 |
| Msa0650930 | AT2G03667.1 | 50.467 | 214 | 88 | 2 | 1 | 211 | 1 | 199 | 2.52e-58 | 194 |
Find 57 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCGCAGAGCTTCTTTC+AGG | 0.244260 | 4_3:-58202046 | None:intergenic |
| GATGTTCTTTCTACAATTAA+AGG | 0.246010 | 4_3:+58202754 | Msa0650930:CDS |
| CGTTTCGTCGTGTTCTATAA+AGG | 0.266928 | 4_3:-58202132 | None:intergenic |
| ATACCAGTGGCCTGCTGATC+TGG | 0.314738 | 4_3:-58203020 | None:intergenic |
| CGGTGCAACTTTGCAGCTTA+GGG | 0.326746 | 4_3:+58202202 | Msa0650930:CDS |
| TTCTTCACACCCAAGCTATC+AGG | 0.334928 | 4_3:-58202074 | None:intergenic |
| TCGGTGCAACTTTGCAGCTT+AGG | 0.341471 | 4_3:+58202201 | Msa0650930:CDS |
| TCCGCTTGTTCAGCCTTTAG+TGG | 0.349517 | 4_3:+58202232 | Msa0650930:CDS |
| CGAAACATTCTGGTGTATAA+TGG | 0.352754 | 4_3:+58202263 | Msa0650930:CDS |
| GGATGCTTCTCGAAACATTC+TGG | 0.367158 | 4_3:+58202253 | Msa0650930:CDS |
| GTTCTATAAAGGATGAGATT+TGG | 0.372374 | 4_3:-58202121 | None:intergenic |
| GCCTGCTGATCTGGAGCAAC+TGG | 0.375811 | 4_3:-58203011 | None:intergenic |
| TTGGGGAAGTTGAGTGGAAT+GGG | 0.390754 | 4_3:-58201775 | None:intergenic |
| TTCTATTGCAGGATAGTTCA+AGG | 0.406323 | 4_3:+58202892 | Msa0650930:intron |
| TCCTGTGGTTCTTATTTGAC+TGG | 0.408994 | 4_3:+58202697 | Msa0650930:CDS |
| CTTGGGAATTGTTGCTCCTG+TGG | 0.427510 | 4_3:+58202682 | Msa0650930:CDS |
| AGGATAGTTCAAGGACCCTT+TGG | 0.431242 | 4_3:+58202901 | Msa0650930:intron |
| GGAATTGCATTGACCGTCTC+AGG | 0.441436 | 4_3:+58201728 | Msa0650930:CDS |
| GGCGGAGCCTTCTTGTTCAC+TGG | 0.445360 | 4_3:+58202946 | Msa0650930:CDS |
| AGTTCAAGGACCCTTTGGTT+TGG | 0.446623 | 4_3:+58202906 | Msa0650930:CDS |
| GACCATGGGCTATCATCTAT+TGG | 0.452967 | 4_3:+58202776 | Msa0650930:CDS |
| AGTTTCTTATGCAGACTCTT+GGG | 0.458584 | 4_3:+58202665 | Msa0650930:CDS |
| TTTGGGGAAGTTGAGTGGAA+TGG | 0.465230 | 4_3:-58201776 | None:intergenic |
| AGTTGAGTGGAATGGGAGAG+AGG | 0.468545 | 4_3:-58201768 | None:intergenic |
| GAGAAGAGGTCCTGATAGCT+TGG | 0.474458 | 4_3:+58202064 | Msa0650930:CDS |
| TGGTTTGGCCGAGATGCATT+TGG | 0.474834 | 4_3:+58202921 | Msa0650930:CDS |
| GAGTTTCTTATGCAGACTCT+TGG | 0.484407 | 4_3:+58202664 | Msa0650930:CDS |
| TTCTACAATTAAAGGACCAT+GGG | 0.492445 | 4_3:+58202762 | Msa0650930:CDS |
| GCCAGTTGCTCCAGATCAGC+AGG | 0.501944 | 4_3:+58203010 | Msa0650930:CDS |
| GGCGATTTGGGGAAGTTGAG+TGG | 0.513848 | 4_3:-58201781 | None:intergenic |
| TTTCTACAATTAAAGGACCA+TGG | 0.517454 | 4_3:+58202761 | Msa0650930:CDS |
| ATGCATCTCGGCCAAACCAA+AGG | 0.517811 | 4_3:-58202917 | None:intergenic |
| AGAAGAGGTCCTGATAGCTT+GGG | 0.535911 | 4_3:+58202065 | Msa0650930:CDS |
| GCCGAGATGCATTTGGTAGG+CGG | 0.538103 | 4_3:+58202928 | Msa0650930:CDS |
| TTTCGAGAAGCATCCACTAA+AGG | 0.538876 | 4_3:-58202245 | None:intergenic |
| TGCATCTCGGCCAAACCAAA+GGG | 0.542020 | 4_3:-58202916 | None:intergenic |
| ATGGGCTATCATCTATTGGC+AGG | 0.544781 | 4_3:+58202780 | Msa0650930:CDS |
| AACGGAGAACTTCATTTCAT+CGG | 0.547006 | 4_3:+58202182 | Msa0650930:CDS |
| AACTGTGTTAAATGCGGGAA+AGG | 0.547646 | 4_3:+58202721 | Msa0650930:CDS |
| GCTCCAGATCAGCAGGCCAC+TGG | 0.553421 | 4_3:+58203017 | Msa0650930:CDS |
| AAAGAAGCTCTGCGGAGAAG+AGG | 0.562727 | 4_3:+58202050 | Msa0650930:CDS |
| TTGGCCGAGATGCATTTGGT+AGG | 0.570304 | 4_3:+58202925 | Msa0650930:CDS |
| TCCACTAAAGGCTGAACAAG+CGG | 0.574215 | 4_3:-58202233 | None:intergenic |
| ACCAGTCAAATAAGAACCAC+AGG | 0.577955 | 4_3:-58202698 | None:intergenic |
| AAAGTTGAATCATCTTCTGT+AGG | 0.580809 | 4_3:-58202969 | None:intergenic |
| TCCGCCTACCAAATGCATCT+CGG | 0.585873 | 4_3:-58202929 | None:intergenic |
| GGTGCAACTTTGCAGCTTAG+GGG | 0.596413 | 4_3:+58202203 | Msa0650930:CDS |
| CTGGTAACTGTGTTAAATGC+GGG | 0.603339 | 4_3:+58202716 | Msa0650930:CDS |
| AAGAGTCTGCATAAGAAACT+CGG | 0.611073 | 4_3:-58202662 | None:intergenic |
| GAAGCAGAAACGAAGATGTG+TGG | 0.614701 | 4_3:+58201707 | None:intergenic |
| CTGTAGGCCAGTGAACAAGA+AGG | 0.621892 | 4_3:-58202953 | None:intergenic |
| GTTAATTCGAATGCCTGAGA+CGG | 0.629293 | 4_3:-58201741 | None:intergenic |
| TTTCATGTATTACATACCAG+TGG | 0.640543 | 4_3:-58203033 | None:intergenic |
| TGCCAATAGATGATAGCCCA+TGG | 0.642233 | 4_3:-58202778 | None:intergenic |
| TCTGCAAATGAAGACAGTAA+CGG | 0.682909 | 4_3:+58202164 | Msa0650930:CDS |
| ACTGGTAACTGTGTTAAATG+CGG | 0.692384 | 4_3:+58202715 | Msa0650930:CDS |
| ATGACCTGAAAGAAGCTCTG+CGG | 0.729969 | 4_3:+58202042 | Msa0650930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTTATGTTCTTC+AGG | + | chr4_3:58202595-58202614 | Msa0650930:intron | 15.0% |
| !!! | TAATTTTTTTTATGTTCTTC+AGG | + | chr4_3:58202595-58202614 | Msa0650930:intron | 15.0% |
| !!! | ATTAACTTACATTTTCAGAT+TGG | - | chr4_3:58201805-58201824 | None:intergenic | 20.0% |
| !! | TTAAGTAAAACGAAAAGTTA+TGG | - | chr4_3:58201971-58201990 | None:intergenic | 20.0% |
| !! | ATATCAACATTTCTACAATA+GGG | + | chr4_3:58202384-58202403 | Msa0650930:intron | 20.0% |
| !!! | ATTAACTTACATTTTCAGAT+TGG | - | chr4_3:58201805-58201824 | None:intergenic | 20.0% |
| !! | TTAAGTAAAACGAAAAGTTA+TGG | - | chr4_3:58201971-58201990 | None:intergenic | 20.0% |
| !! | ATATCAACATTTCTACAATA+GGG | + | chr4_3:58202384-58202403 | Msa0650930:intron | 20.0% |
| ! | AATGTAAGTTAATTGTACCT+CGG | + | chr4_3:58201812-58201831 | Msa0650930:intron | 25.0% |
| !! | TTCATTTTCTCAACTTATTG+TGG | + | chr4_3:58201884-58201903 | Msa0650930:intron | 25.0% |
| !! | TCATTTTCTCAACTTATTGT+GGG | + | chr4_3:58201885-58201904 | Msa0650930:intron | 25.0% |
| !! | TTTTTACTGTGTGATTGATT+TGG | + | chr4_3:58201998-58202017 | Msa0650930:intron | 25.0% |
| ! | GATATCAACATTTCTACAAT+AGG | + | chr4_3:58202383-58202402 | Msa0650930:intron | 25.0% |
| ! | TGAAACATAGTTATAAACTG+TGG | + | chr4_3:58202457-58202476 | Msa0650930:intron | 25.0% |
| ! | GATGTTCTTTCTACAATTAA+AGG | + | chr4_3:58202754-58202773 | Msa0650930:CDS | 25.0% |
| !! | GTAATTATTCGTTTTCTTTG+TGG | + | chr4_3:58202840-58202859 | Msa0650930:intron | 25.0% |
| ! | AATGTAAGTTAATTGTACCT+CGG | + | chr4_3:58201812-58201831 | Msa0650930:intron | 25.0% |
| !! | TTCATTTTCTCAACTTATTG+TGG | + | chr4_3:58201884-58201903 | Msa0650930:intron | 25.0% |
| !! | TCATTTTCTCAACTTATTGT+GGG | + | chr4_3:58201885-58201904 | Msa0650930:intron | 25.0% |
| !! | TTTTTACTGTGTGATTGATT+TGG | + | chr4_3:58201998-58202017 | Msa0650930:intron | 25.0% |
| ! | GATATCAACATTTCTACAAT+AGG | + | chr4_3:58202383-58202402 | Msa0650930:intron | 25.0% |
| ! | TGAAACATAGTTATAAACTG+TGG | + | chr4_3:58202457-58202476 | Msa0650930:intron | 25.0% |
| ! | GATGTTCTTTCTACAATTAA+AGG | + | chr4_3:58202754-58202773 | Msa0650930:CDS | 25.0% |
| !! | GTAATTATTCGTTTTCTTTG+TGG | + | chr4_3:58202840-58202859 | Msa0650930:intron | 25.0% |
| GTTCTATAAAGGATGAGATT+TGG | - | chr4_3:58202124-58202143 | None:intergenic | 30.0% | |
| CTTGATACTGCAATAAAATG+TGG | - | chr4_3:58202511-58202530 | None:intergenic | 30.0% | |
| ! | CACATTTTATTGCAGTATCA+AGG | + | chr4_3:58202509-58202528 | Msa0650930:intron | 30.0% |
| TTTCTACAATTAAAGGACCA+TGG | + | chr4_3:58202761-58202780 | Msa0650930:CDS | 30.0% | |
| TTCTACAATTAAAGGACCAT+GGG | + | chr4_3:58202762-58202781 | Msa0650930:CDS | 30.0% | |
| ! | TACTTTCTCTTTTCTATTGC+AGG | + | chr4_3:58202881-58202900 | Msa0650930:intron | 30.0% |
| AAAGTTGAATCATCTTCTGT+AGG | - | chr4_3:58202972-58202991 | None:intergenic | 30.0% | |
| GTTCTATAAAGGATGAGATT+TGG | - | chr4_3:58202124-58202143 | None:intergenic | 30.0% | |
| CTTGATACTGCAATAAAATG+TGG | - | chr4_3:58202511-58202530 | None:intergenic | 30.0% | |
| ! | CACATTTTATTGCAGTATCA+AGG | + | chr4_3:58202509-58202528 | Msa0650930:intron | 30.0% |
| TTTCTACAATTAAAGGACCA+TGG | + | chr4_3:58202761-58202780 | Msa0650930:CDS | 30.0% | |
| TTCTACAATTAAAGGACCAT+GGG | + | chr4_3:58202762-58202781 | Msa0650930:CDS | 30.0% | |
| ! | TACTTTCTCTTTTCTATTGC+AGG | + | chr4_3:58202881-58202900 | Msa0650930:intron | 30.0% |
| AAAGTTGAATCATCTTCTGT+AGG | - | chr4_3:58202972-58202991 | None:intergenic | 30.0% | |
| ! | ATTTTCAGATTGGCGATTTG+GGG | - | chr4_3:58201795-58201814 | None:intergenic | 35.0% |
| ! | CATTTTCAGATTGGCGATTT+GGG | - | chr4_3:58201796-58201815 | None:intergenic | 35.0% |
| ! | ACATTTTCAGATTGGCGATT+TGG | - | chr4_3:58201797-58201816 | None:intergenic | 35.0% |
| TCTGCAAATGAAGACAGTAA+CGG | + | chr4_3:58202164-58202183 | Msa0650930:CDS | 35.0% | |
| AACGGAGAACTTCATTTCAT+CGG | + | chr4_3:58202182-58202201 | Msa0650930:CDS | 35.0% | |
| CGAAACATTCTGGTGTATAA+TGG | + | chr4_3:58202263-58202282 | Msa0650930:CDS | 35.0% | |
| ! | ACAACGAAGTCTAAAATCAG+AGG | - | chr4_3:58202304-58202323 | None:intergenic | 35.0% |
| ! | GACTGCAATTCTAGTTGTAT+CGG | + | chr4_3:58202485-58202504 | Msa0650930:intron | 35.0% |
| ACATCTTACTGCAAACATCA+TGG | - | chr4_3:58202566-58202585 | None:intergenic | 35.0% | |
| ! | TGTTCTTCAGGTGAGATTTT+CGG | + | chr4_3:58202607-58202626 | Msa0650930:intron | 35.0% |
| AAGAGTCTGCATAAGAAACT+CGG | - | chr4_3:58202665-58202684 | None:intergenic | 35.0% | |
| AGTTTCTTATGCAGACTCTT+GGG | + | chr4_3:58202665-58202684 | Msa0650930:CDS | 35.0% | |
| ACTGGTAACTGTGTTAAATG+CGG | + | chr4_3:58202715-58202734 | Msa0650930:CDS | 35.0% | |
| TTTCTTTGTGGAGTCATAAG+TGG | + | chr4_3:58202852-58202871 | Msa0650930:intron | 35.0% | |
| TTCTATTGCAGGATAGTTCA+AGG | + | chr4_3:58202892-58202911 | Msa0650930:intron | 35.0% | |
| ! | ATTTTCAGATTGGCGATTTG+GGG | - | chr4_3:58201795-58201814 | None:intergenic | 35.0% |
| ! | CATTTTCAGATTGGCGATTT+GGG | - | chr4_3:58201796-58201815 | None:intergenic | 35.0% |
| ! | ACATTTTCAGATTGGCGATT+TGG | - | chr4_3:58201797-58201816 | None:intergenic | 35.0% |
| TCTGCAAATGAAGACAGTAA+CGG | + | chr4_3:58202164-58202183 | Msa0650930:CDS | 35.0% | |
| AACGGAGAACTTCATTTCAT+CGG | + | chr4_3:58202182-58202201 | Msa0650930:CDS | 35.0% | |
| CGAAACATTCTGGTGTATAA+TGG | + | chr4_3:58202263-58202282 | Msa0650930:CDS | 35.0% | |
| ! | ACAACGAAGTCTAAAATCAG+AGG | - | chr4_3:58202304-58202323 | None:intergenic | 35.0% |
| ! | GACTGCAATTCTAGTTGTAT+CGG | + | chr4_3:58202485-58202504 | Msa0650930:intron | 35.0% |
| ACATCTTACTGCAAACATCA+TGG | - | chr4_3:58202566-58202585 | None:intergenic | 35.0% | |
| ! | TGTTCTTCAGGTGAGATTTT+CGG | + | chr4_3:58202607-58202626 | Msa0650930:intron | 35.0% |
| AAGAGTCTGCATAAGAAACT+CGG | - | chr4_3:58202665-58202684 | None:intergenic | 35.0% | |
| AGTTTCTTATGCAGACTCTT+GGG | + | chr4_3:58202665-58202684 | Msa0650930:CDS | 35.0% | |
| ACTGGTAACTGTGTTAAATG+CGG | + | chr4_3:58202715-58202734 | Msa0650930:CDS | 35.0% | |
| TTTCTTTGTGGAGTCATAAG+TGG | + | chr4_3:58202852-58202871 | Msa0650930:intron | 35.0% | |
| TTCTATTGCAGGATAGTTCA+AGG | + | chr4_3:58202892-58202911 | Msa0650930:intron | 35.0% | |
| GTTAATTCGAATGCCTGAGA+CGG | - | chr4_3:58201744-58201763 | None:intergenic | 40.0% | |
| TCTGTGTCTCAGTGTTTCAT+AGG | + | chr4_3:58201922-58201941 | Msa0650930:intron | 40.0% | |
| CGTTTCGTCGTGTTCTATAA+AGG | - | chr4_3:58202135-58202154 | None:intergenic | 40.0% | |
| !! | TTTCGAGAAGCATCCACTAA+AGG | - | chr4_3:58202248-58202267 | None:intergenic | 40.0% |
| TACAACTAGAATTGCAGTCG+CGG | - | chr4_3:58202484-58202503 | None:intergenic | 40.0% | |
| GAGTTTCTTATGCAGACTCT+TGG | + | chr4_3:58202664-58202683 | Msa0650930:CDS | 40.0% | |
| ! | TCCTGTGGTTCTTATTTGAC+TGG | + | chr4_3:58202697-58202716 | Msa0650930:CDS | 40.0% |
| ACCAGTCAAATAAGAACCAC+AGG | - | chr4_3:58202701-58202720 | None:intergenic | 40.0% | |
| CTGGTAACTGTGTTAAATGC+GGG | + | chr4_3:58202716-58202735 | Msa0650930:CDS | 40.0% | |
| AACTGTGTTAAATGCGGGAA+AGG | + | chr4_3:58202721-58202740 | Msa0650930:CDS | 40.0% | |
| GAACACAGAAACTTACCACT+TGG | - | chr4_3:58202811-58202830 | None:intergenic | 40.0% | |
| GTTAATTCGAATGCCTGAGA+CGG | - | chr4_3:58201744-58201763 | None:intergenic | 40.0% | |
| TCTGTGTCTCAGTGTTTCAT+AGG | + | chr4_3:58201922-58201941 | Msa0650930:intron | 40.0% | |
| CGTTTCGTCGTGTTCTATAA+AGG | - | chr4_3:58202135-58202154 | None:intergenic | 40.0% | |
| !! | TTTCGAGAAGCATCCACTAA+AGG | - | chr4_3:58202248-58202267 | None:intergenic | 40.0% |
| TACAACTAGAATTGCAGTCG+CGG | - | chr4_3:58202484-58202503 | None:intergenic | 40.0% | |
| GAGTTTCTTATGCAGACTCT+TGG | + | chr4_3:58202664-58202683 | Msa0650930:CDS | 40.0% | |
| ! | TCCTGTGGTTCTTATTTGAC+TGG | + | chr4_3:58202697-58202716 | Msa0650930:CDS | 40.0% |
| ACCAGTCAAATAAGAACCAC+AGG | - | chr4_3:58202701-58202720 | None:intergenic | 40.0% | |
| CTGGTAACTGTGTTAAATGC+GGG | + | chr4_3:58202716-58202735 | Msa0650930:CDS | 40.0% | |
| AACTGTGTTAAATGCGGGAA+AGG | + | chr4_3:58202721-58202740 | Msa0650930:CDS | 40.0% | |
| GAACACAGAAACTTACCACT+TGG | - | chr4_3:58202811-58202830 | None:intergenic | 40.0% | |
| TTGGGGAAGTTGAGTGGAAT+GGG | - | chr4_3:58201778-58201797 | None:intergenic | 45.0% | |
| TTTGGGGAAGTTGAGTGGAA+TGG | - | chr4_3:58201779-58201798 | None:intergenic | 45.0% | |
| !! | CATTCAATCAGAAGTGTCCG+AGG | - | chr4_3:58201832-58201851 | None:intergenic | 45.0% |
| ! | CTTATTGTGGGTGTCGTATC+CGG | + | chr4_3:58201897-58201916 | Msa0650930:intron | 45.0% |
| AAACACTGAGACACAGACAC+CGG | - | chr4_3:58201919-58201938 | None:intergenic | 45.0% | |
| ATGACCTGAAAGAAGCTCTG+CGG | + | chr4_3:58202042-58202061 | Msa0650930:CDS | 45.0% | |
| AGAAGAGGTCCTGATAGCTT+GGG | + | chr4_3:58202065-58202084 | Msa0650930:CDS | 45.0% | |
| TTCTTCACACCCAAGCTATC+AGG | - | chr4_3:58202077-58202096 | None:intergenic | 45.0% | |
| TCCACTAAAGGCTGAACAAG+CGG | - | chr4_3:58202236-58202255 | None:intergenic | 45.0% | |
| GGATGCTTCTCGAAACATTC+TGG | + | chr4_3:58202253-58202272 | Msa0650930:CDS | 45.0% | |
| CTAAAATCAGAGGCAGTTGC+AGG | - | chr4_3:58202294-58202313 | None:intergenic | 45.0% | |
| ! | TCTTCAGGTGAGATTTTCGG+AGG | + | chr4_3:58202610-58202629 | Msa0650930:intron | 45.0% |
| ! | GACCATGGGCTATCATCTAT+TGG | + | chr4_3:58202776-58202795 | Msa0650930:CDS | 45.0% |
| TGCCAATAGATGATAGCCCA+TGG | - | chr4_3:58202781-58202800 | None:intergenic | 45.0% | |
| ! | ATGGGCTATCATCTATTGGC+AGG | + | chr4_3:58202780-58202799 | Msa0650930:CDS | 45.0% |
| TATTGGCAGGTAACTCCAAG+TGG | + | chr4_3:58202793-58202812 | Msa0650930:intron | 45.0% | |
| AGGATAGTTCAAGGACCCTT+TGG | + | chr4_3:58202901-58202920 | Msa0650930:intron | 45.0% | |
| AGTTCAAGGACCCTTTGGTT+TGG | + | chr4_3:58202906-58202925 | Msa0650930:CDS | 45.0% | |
| TTGGGGAAGTTGAGTGGAAT+GGG | - | chr4_3:58201778-58201797 | None:intergenic | 45.0% | |
| TTTGGGGAAGTTGAGTGGAA+TGG | - | chr4_3:58201779-58201798 | None:intergenic | 45.0% | |
| !! | CATTCAATCAGAAGTGTCCG+AGG | - | chr4_3:58201832-58201851 | None:intergenic | 45.0% |
| ! | CTTATTGTGGGTGTCGTATC+CGG | + | chr4_3:58201897-58201916 | Msa0650930:intron | 45.0% |
| AAACACTGAGACACAGACAC+CGG | - | chr4_3:58201919-58201938 | None:intergenic | 45.0% | |
| ATGACCTGAAAGAAGCTCTG+CGG | + | chr4_3:58202042-58202061 | Msa0650930:CDS | 45.0% | |
| AGAAGAGGTCCTGATAGCTT+GGG | + | chr4_3:58202065-58202084 | Msa0650930:CDS | 45.0% | |
| TTCTTCACACCCAAGCTATC+AGG | - | chr4_3:58202077-58202096 | None:intergenic | 45.0% | |
| TCCACTAAAGGCTGAACAAG+CGG | - | chr4_3:58202236-58202255 | None:intergenic | 45.0% | |
| GGATGCTTCTCGAAACATTC+TGG | + | chr4_3:58202253-58202272 | Msa0650930:CDS | 45.0% | |
| CTAAAATCAGAGGCAGTTGC+AGG | - | chr4_3:58202294-58202313 | None:intergenic | 45.0% | |
| ! | TCTTCAGGTGAGATTTTCGG+AGG | + | chr4_3:58202610-58202629 | Msa0650930:intron | 45.0% |
| ! | GACCATGGGCTATCATCTAT+TGG | + | chr4_3:58202776-58202795 | Msa0650930:CDS | 45.0% |
| TGCCAATAGATGATAGCCCA+TGG | - | chr4_3:58202781-58202800 | None:intergenic | 45.0% | |
| ! | ATGGGCTATCATCTATTGGC+AGG | + | chr4_3:58202780-58202799 | Msa0650930:CDS | 45.0% |
| TATTGGCAGGTAACTCCAAG+TGG | + | chr4_3:58202793-58202812 | Msa0650930:intron | 45.0% | |
| AGGATAGTTCAAGGACCCTT+TGG | + | chr4_3:58202901-58202920 | Msa0650930:intron | 45.0% | |
| AGTTCAAGGACCCTTTGGTT+TGG | + | chr4_3:58202906-58202925 | Msa0650930:CDS | 45.0% | |
| ! | GGAATTGCATTGACCGTCTC+AGG | + | chr4_3:58201728-58201747 | Msa0650930:CDS | 50.0% |
| AGTTGAGTGGAATGGGAGAG+AGG | - | chr4_3:58201771-58201790 | None:intergenic | 50.0% | |
| TTCTCCGCAGAGCTTCTTTC+AGG | - | chr4_3:58202049-58202068 | None:intergenic | 50.0% | |
| AAAGAAGCTCTGCGGAGAAG+AGG | + | chr4_3:58202050-58202069 | Msa0650930:CDS | 50.0% | |
| GAGAAGAGGTCCTGATAGCT+TGG | + | chr4_3:58202064-58202083 | Msa0650930:CDS | 50.0% | |
| TCGGTGCAACTTTGCAGCTT+AGG | + | chr4_3:58202201-58202220 | Msa0650930:CDS | 50.0% | |
| CGGTGCAACTTTGCAGCTTA+GGG | + | chr4_3:58202202-58202221 | Msa0650930:CDS | 50.0% | |
| GGTGCAACTTTGCAGCTTAG+GGG | + | chr4_3:58202203-58202222 | Msa0650930:CDS | 50.0% | |
| TCCGCTTGTTCAGCCTTTAG+TGG | + | chr4_3:58202232-58202251 | Msa0650930:CDS | 50.0% | |
| CTTGGGAATTGTTGCTCCTG+TGG | + | chr4_3:58202682-58202701 | Msa0650930:CDS | 50.0% | |
| TGCATCTCGGCCAAACCAAA+GGG | - | chr4_3:58202919-58202938 | None:intergenic | 50.0% | |
| ATGCATCTCGGCCAAACCAA+AGG | - | chr4_3:58202920-58202939 | None:intergenic | 50.0% | |
| ! | TGGTTTGGCCGAGATGCATT+TGG | + | chr4_3:58202921-58202940 | Msa0650930:CDS | 50.0% |
| TTGGCCGAGATGCATTTGGT+AGG | + | chr4_3:58202925-58202944 | Msa0650930:CDS | 50.0% | |
| TCCGCCTACCAAATGCATCT+CGG | - | chr4_3:58202932-58202951 | None:intergenic | 50.0% | |
| CTGTAGGCCAGTGAACAAGA+AGG | - | chr4_3:58202956-58202975 | None:intergenic | 50.0% | |
| ! | GGAATTGCATTGACCGTCTC+AGG | + | chr4_3:58201728-58201747 | Msa0650930:CDS | 50.0% |
| AGTTGAGTGGAATGGGAGAG+AGG | - | chr4_3:58201771-58201790 | None:intergenic | 50.0% | |
| TTCTCCGCAGAGCTTCTTTC+AGG | - | chr4_3:58202049-58202068 | None:intergenic | 50.0% | |
| AAAGAAGCTCTGCGGAGAAG+AGG | + | chr4_3:58202050-58202069 | Msa0650930:CDS | 50.0% | |
| GAGAAGAGGTCCTGATAGCT+TGG | + | chr4_3:58202064-58202083 | Msa0650930:CDS | 50.0% | |
| TCGGTGCAACTTTGCAGCTT+AGG | + | chr4_3:58202201-58202220 | Msa0650930:CDS | 50.0% | |
| CGGTGCAACTTTGCAGCTTA+GGG | + | chr4_3:58202202-58202221 | Msa0650930:CDS | 50.0% | |
| GGTGCAACTTTGCAGCTTAG+GGG | + | chr4_3:58202203-58202222 | Msa0650930:CDS | 50.0% | |
| TCCGCTTGTTCAGCCTTTAG+TGG | + | chr4_3:58202232-58202251 | Msa0650930:CDS | 50.0% | |
| CTTGGGAATTGTTGCTCCTG+TGG | + | chr4_3:58202682-58202701 | Msa0650930:CDS | 50.0% | |
| TGCATCTCGGCCAAACCAAA+GGG | - | chr4_3:58202919-58202938 | None:intergenic | 50.0% | |
| ATGCATCTCGGCCAAACCAA+AGG | - | chr4_3:58202920-58202939 | None:intergenic | 50.0% | |
| ! | TGGTTTGGCCGAGATGCATT+TGG | + | chr4_3:58202921-58202940 | Msa0650930:CDS | 50.0% |
| TTGGCCGAGATGCATTTGGT+AGG | + | chr4_3:58202925-58202944 | Msa0650930:CDS | 50.0% | |
| TCCGCCTACCAAATGCATCT+CGG | - | chr4_3:58202932-58202951 | None:intergenic | 50.0% | |
| CTGTAGGCCAGTGAACAAGA+AGG | - | chr4_3:58202956-58202975 | None:intergenic | 50.0% | |
| ! | GGCGATTTGGGGAAGTTGAG+TGG | - | chr4_3:58201784-58201803 | None:intergenic | 55.0% |
| GCCGAGATGCATTTGGTAGG+CGG | + | chr4_3:58202928-58202947 | Msa0650930:CDS | 55.0% | |
| ATACCAGTGGCCTGCTGATC+TGG | - | chr4_3:58203023-58203042 | None:intergenic | 55.0% | |
| ! | GGCGATTTGGGGAAGTTGAG+TGG | - | chr4_3:58201784-58201803 | None:intergenic | 55.0% |
| GCCGAGATGCATTTGGTAGG+CGG | + | chr4_3:58202928-58202947 | Msa0650930:CDS | 55.0% | |
| ATACCAGTGGCCTGCTGATC+TGG | - | chr4_3:58203023-58203042 | None:intergenic | 55.0% | |
| GGCGGAGCCTTCTTGTTCAC+TGG | + | chr4_3:58202946-58202965 | Msa0650930:CDS | 60.0% | |
| GCCAGTTGCTCCAGATCAGC+AGG | + | chr4_3:58203010-58203029 | Msa0650930:CDS | 60.0% | |
| ! | GCCTGCTGATCTGGAGCAAC+TGG | - | chr4_3:58203014-58203033 | None:intergenic | 60.0% |
| GGCGGAGCCTTCTTGTTCAC+TGG | + | chr4_3:58202946-58202965 | Msa0650930:CDS | 60.0% | |
| GCCAGTTGCTCCAGATCAGC+AGG | + | chr4_3:58203010-58203029 | Msa0650930:CDS | 60.0% | |
| ! | GCCTGCTGATCTGGAGCAAC+TGG | - | chr4_3:58203014-58203033 | None:intergenic | 60.0% |
| GCTCCAGATCAGCAGGCCAC+TGG | + | chr4_3:58203017-58203036 | Msa0650930:CDS | 65.0% | |
| GCTCCAGATCAGCAGGCCAC+TGG | + | chr4_3:58203017-58203036 | Msa0650930:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 58201711 | 58203046 | 58201711 | ID=Msa0650930;Name=Msa0650930 |
| chr4_3 | mRNA | 58201711 | 58203046 | 58201711 | ID=Msa0650930-mRNA-1;Parent=Msa0650930;Name=Msa0650930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=11|0.66|0.5|1|1|1|4|0|226 |
| chr4_3 | exon | 58201711 | 58201814 | 58201711 | ID=Msa0650930-mRNA-1:exon:15359;Parent=Msa0650930-mRNA-1 |
| chr4_3 | exon | 58202026 | 58202284 | 58202026 | ID=Msa0650930-mRNA-1:exon:15360;Parent=Msa0650930-mRNA-1 |
| chr4_3 | exon | 58202617 | 58202801 | 58202617 | ID=Msa0650930-mRNA-1:exon:15361;Parent=Msa0650930-mRNA-1 |
| chr4_3 | exon | 58202903 | 58203046 | 58202903 | ID=Msa0650930-mRNA-1:exon:15362;Parent=Msa0650930-mRNA-1 |
| chr4_3 | five_prime_UTR | 58201711 | 58201721 | 58201711 | ID=Msa0650930-mRNA-1:five_prime_utr;Parent=Msa0650930-mRNA-1 |
| chr4_3 | CDS | 58201722 | 58201814 | 58201722 | ID=Msa0650930-mRNA-1:cds;Parent=Msa0650930-mRNA-1 |
| chr4_3 | CDS | 58202026 | 58202284 | 58202026 | ID=Msa0650930-mRNA-1:cds;Parent=Msa0650930-mRNA-1 |
| chr4_3 | CDS | 58202617 | 58202801 | 58202617 | ID=Msa0650930-mRNA-1:cds;Parent=Msa0650930-mRNA-1 |
| chr4_3 | CDS | 58202903 | 58203046 | 58202903 | ID=Msa0650930-mRNA-1:cds;Parent=Msa0650930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
